Query 039029
Match_columns 319
No_of_seqs 613 out of 1475
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 08:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.5E-35 3.2E-39 240.2 24.0 198 1-198 16-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.1E-34 3.7E-39 239.9 23.9 185 118-309 29-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.8E-30 6E-35 222.5 34.4 303 5-318 195-571 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.9E-30 1.7E-34 219.7 31.1 300 6-317 146-536 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.4E-31 187.3 33.2 294 9-317 66-359 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2E-25 6.9E-30 181.2 34.9 293 10-317 33-325 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 5.8E-25 2E-29 181.9 32.8 300 8-318 24-350 (450)
8 3hym_B Cell division cycle pro 99.9 6E-23 2E-27 162.8 33.3 296 5-314 17-322 (330)
9 3ieg_A DNAJ homolog subfamily 99.9 2E-22 6.9E-27 161.5 33.6 300 9-318 2-327 (359)
10 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 167.2 33.6 282 7-305 57-371 (450)
11 2gw1_A Mitochondrial precursor 99.9 6.1E-22 2.1E-26 166.5 29.3 302 8-318 37-470 (514)
12 2gw1_A Mitochondrial precursor 99.9 1.3E-21 4.5E-26 164.4 29.1 294 10-318 6-393 (514)
13 3hym_B Cell division cycle pro 99.9 5E-21 1.7E-25 151.7 30.3 272 41-318 18-291 (330)
14 3ieg_A DNAJ homolog subfamily 99.9 3E-20 1E-24 148.9 34.5 290 8-312 35-355 (359)
15 1fch_A Peroxisomal targeting s 99.9 9.7E-22 3.3E-26 158.3 25.5 286 20-317 35-350 (368)
16 4eqf_A PEX5-related protein; a 99.9 1.8E-21 6.1E-26 156.6 24.6 274 9-287 64-352 (365)
17 1fch_A Peroxisomal targeting s 99.9 6.2E-21 2.1E-25 153.6 27.4 275 9-289 63-357 (368)
18 4eqf_A PEX5-related protein; a 99.9 2.7E-21 9.1E-26 155.6 24.9 262 44-317 64-347 (365)
19 3fp2_A TPR repeat-containing p 99.9 1.5E-20 5.2E-25 158.9 29.8 301 8-317 57-482 (537)
20 3cv0_A Peroxisome targeting si 99.9 6.8E-21 2.3E-25 150.7 25.5 276 9-290 20-314 (327)
21 3cv0_A Peroxisome targeting si 99.9 3.7E-20 1.3E-24 146.5 25.3 261 44-317 20-306 (327)
22 3fp2_A TPR repeat-containing p 99.9 1E-19 3.4E-24 153.9 29.2 293 10-318 25-399 (537)
23 3mkr_A Coatomer subunit epsilo 99.9 9.6E-20 3.3E-24 141.3 25.9 275 17-317 6-285 (291)
24 3mkr_A Coatomer subunit epsilo 99.8 1.2E-17 4.1E-22 129.5 26.9 247 12-284 36-287 (291)
25 2pl2_A Hypothetical conserved 99.8 5E-18 1.7E-22 126.0 22.8 199 7-211 2-211 (217)
26 3uq3_A Heat shock protein STI1 99.8 1.6E-17 5.4E-22 126.7 25.8 225 46-291 6-236 (258)
27 1b89_A Protein (clathrin heavy 99.8 1.3E-19 4.5E-24 144.0 13.6 266 8-317 30-302 (449)
28 2pl2_A Hypothetical conserved 99.8 6.1E-18 2.1E-22 125.6 21.9 199 78-289 3-212 (217)
29 3uq3_A Heat shock protein STI1 99.8 1.1E-17 3.9E-22 127.5 23.5 226 10-249 5-236 (258)
30 3spa_A Mtrpol, DNA-directed RN 99.8 4.5E-20 1.5E-24 158.4 10.9 149 11-164 128-286 (1134)
31 3spa_A Mtrpol, DNA-directed RN 99.8 2.2E-19 7.5E-24 154.2 11.5 122 45-166 127-252 (1134)
32 3u4t_A TPR repeat-containing p 99.8 6.1E-17 2.1E-21 124.6 23.2 238 9-250 2-251 (272)
33 2h6f_A Protein farnesyltransfe 99.8 1.6E-16 5.5E-21 127.2 26.3 249 10-273 97-364 (382)
34 2xm6_A Protein corresponding t 99.8 8.8E-15 3E-19 122.2 37.2 279 11-317 76-423 (490)
35 2h6f_A Protein farnesyltransfe 99.8 2.7E-16 9.2E-21 126.0 26.3 248 45-308 97-364 (382)
36 3u4t_A TPR repeat-containing p 99.8 2.1E-16 7.2E-21 121.6 24.5 252 45-303 3-261 (272)
37 1ouv_A Conserved hypothetical 99.8 2.1E-15 7.1E-20 116.1 29.8 224 9-250 5-252 (273)
38 2xm6_A Protein corresponding t 99.8 1.3E-14 4.6E-19 121.1 36.9 270 9-309 38-340 (490)
39 1ouv_A Conserved hypothetical 99.8 2.7E-15 9.3E-20 115.5 30.4 224 44-292 5-252 (273)
40 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-17 5.5E-22 128.0 17.8 223 20-248 15-243 (275)
41 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.1E-17 1.8E-21 125.2 20.3 224 10-243 43-269 (275)
42 2ho1_A Type 4 fimbrial biogene 99.8 8.6E-16 2.9E-20 116.8 26.5 210 80-302 37-247 (252)
43 1b89_A Protein (clathrin heavy 99.8 6E-19 2E-23 140.3 8.8 245 22-315 15-261 (449)
44 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-16 4.4E-21 120.6 20.5 201 9-214 22-222 (243)
45 2ho1_A Type 4 fimbrial biogene 99.8 1.2E-15 4.2E-20 116.0 25.9 200 46-249 38-238 (252)
46 3sf4_A G-protein-signaling mod 99.8 2.1E-17 7.2E-22 134.6 17.1 307 7-316 6-366 (406)
47 4g1t_A Interferon-induced prot 99.8 6.1E-15 2.1E-19 122.6 31.9 298 8-317 49-392 (472)
48 2vq2_A PILW, putative fimbrial 99.8 1.5E-15 5.3E-20 113.2 24.9 209 80-300 8-218 (225)
49 2vq2_A PILW, putative fimbrial 99.8 1.6E-15 5.4E-20 113.1 24.8 203 9-214 7-211 (225)
50 4g1t_A Interferon-induced prot 99.8 3.8E-15 1.3E-19 123.9 29.7 299 10-318 94-451 (472)
51 2q7f_A YRRB protein; TPR, prot 99.7 3.4E-16 1.2E-20 118.3 20.2 200 80-291 23-222 (243)
52 4a1s_A PINS, partner of inscut 99.7 1.4E-16 4.9E-21 130.0 17.4 277 12-291 50-372 (411)
53 3ro2_A PINS homolog, G-protein 99.7 3E-16 1E-20 124.3 16.7 278 11-291 6-332 (338)
54 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.6E-18 116.9 31.4 292 9-316 12-444 (530)
55 4a1s_A PINS, partner of inscut 99.7 5.8E-16 2E-20 126.4 16.7 270 45-317 48-363 (411)
56 2ond_A Cleavage stimulation fa 99.7 6.3E-14 2.2E-18 109.8 27.2 236 11-250 9-271 (308)
57 2ond_A Cleavage stimulation fa 99.7 1.8E-13 6.1E-18 107.2 28.6 220 62-291 33-270 (308)
58 3sf4_A G-protein-signaling mod 99.7 1.5E-15 5.3E-20 123.6 17.4 274 42-318 6-328 (406)
59 3vtx_A MAMA; tetratricopeptide 99.7 3.7E-14 1.3E-18 102.4 22.0 166 79-248 4-169 (184)
60 3vtx_A MAMA; tetratricopeptide 99.7 3.8E-14 1.3E-18 102.3 21.5 165 10-178 5-169 (184)
61 4abn_A Tetratricopeptide repea 99.7 1.2E-14 4E-19 120.6 21.2 214 94-318 82-313 (474)
62 2ooe_A Cleavage stimulation fa 99.7 8.7E-13 3E-17 111.3 32.4 206 101-317 259-483 (530)
63 4abn_A Tetratricopeptide repea 99.7 1.6E-14 5.5E-19 119.8 21.2 214 26-245 84-317 (474)
64 3ro2_A PINS homolog, G-protein 99.7 2.5E-15 8.7E-20 118.9 15.2 269 46-317 6-323 (338)
65 3nf1_A KLC 1, kinesin light ch 99.7 1.3E-15 4.6E-20 119.3 13.3 240 9-249 26-307 (311)
66 3ulq_A Response regulator aspa 99.6 3E-14 1E-18 115.2 18.8 292 20-317 22-359 (383)
67 3nf1_A KLC 1, kinesin light ch 99.6 4.5E-15 1.6E-19 116.3 12.7 240 44-291 26-307 (311)
68 1xi4_A Clathrin heavy chain; a 99.6 4.6E-13 1.6E-17 119.4 26.0 194 15-246 1054-1247(1630)
69 1xi4_A Clathrin heavy chain; a 99.6 3E-12 1E-16 114.3 29.9 263 10-317 1105-1375(1630)
70 1hz4_A MALT regulatory protein 99.6 1.5E-12 5.2E-17 104.8 26.2 299 14-315 18-354 (373)
71 3ulq_A Response regulator aspa 99.6 3.1E-13 1.1E-17 109.3 21.1 232 16-249 109-368 (383)
72 4gyw_A UDP-N-acetylglucosamine 99.6 3.5E-13 1.2E-17 116.3 20.6 166 114-290 8-173 (723)
73 3q15_A PSP28, response regulat 99.6 8.9E-13 3E-17 106.4 21.5 305 6-317 6-356 (378)
74 3as5_A MAMA; tetratricopeptide 99.6 1.2E-12 4.2E-17 94.2 20.2 165 81-249 9-173 (186)
75 4i17_A Hypothetical protein; T 99.6 1.8E-12 6E-17 96.9 21.4 197 8-215 5-210 (228)
76 1hz4_A MALT regulatory protein 99.6 2.9E-12 9.9E-17 103.2 24.1 266 48-317 17-313 (373)
77 4gyw_A UDP-N-acetylglucosamine 99.6 3.1E-13 1E-17 116.7 19.2 166 9-178 8-173 (723)
78 3as5_A MAMA; tetratricopeptide 99.6 1.3E-12 4.4E-17 94.0 19.3 162 48-213 11-172 (186)
79 4i17_A Hypothetical protein; T 99.5 7.3E-12 2.5E-16 93.5 22.4 199 43-255 5-213 (228)
80 3q15_A PSP28, response regulat 99.5 4.7E-12 1.6E-16 102.1 21.0 231 16-248 107-364 (378)
81 3edt_B KLC 2, kinesin light ch 99.5 8.3E-13 2.8E-17 101.8 15.5 228 21-249 12-281 (283)
82 3e4b_A ALGK; tetratricopeptide 99.5 2.9E-12 1E-16 105.6 19.5 169 117-308 178-365 (452)
83 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-11 5.3E-16 101.3 23.7 255 9-293 68-389 (452)
84 3edt_B KLC 2, kinesin light ch 99.5 8.5E-13 2.9E-17 101.8 15.2 232 56-291 12-281 (283)
85 3qky_A Outer membrane assembly 99.5 3.1E-11 1.1E-15 92.1 21.3 213 78-317 13-252 (261)
86 3qky_A Outer membrane assembly 99.4 9.7E-11 3.3E-15 89.3 20.2 100 10-110 15-127 (261)
87 3urz_A Uncharacterized protein 99.4 1.7E-10 5.8E-15 84.7 19.7 131 86-222 60-192 (208)
88 2pzi_A Probable serine/threoni 99.4 4.5E-11 1.5E-15 103.6 19.2 174 21-200 402-583 (681)
89 1qqe_A Vesicular transport pro 99.4 4.5E-11 1.5E-15 92.7 17.3 207 25-248 32-268 (292)
90 3mv2_B Coatomer subunit epsilo 99.4 3.9E-10 1.3E-14 86.2 21.7 250 17-298 20-287 (310)
91 3dra_A Protein farnesyltransfe 99.4 2.6E-09 8.9E-14 82.4 26.0 223 21-248 44-286 (306)
92 2fo7_A Synthetic consensus TPR 99.4 2E-10 6.8E-15 77.8 17.9 130 117-249 3-132 (136)
93 3urz_A Uncharacterized protein 99.4 1.2E-10 4.1E-15 85.6 17.4 173 12-191 6-196 (208)
94 1qqe_A Vesicular transport pro 99.4 5.7E-11 2E-15 92.2 16.4 203 11-213 38-268 (292)
95 2fo7_A Synthetic consensus TPR 99.3 2.4E-10 8.1E-15 77.4 17.3 21 16-36 7-27 (136)
96 3mv2_B Coatomer subunit epsilo 99.3 7.3E-10 2.5E-14 84.8 21.1 183 64-255 85-286 (310)
97 3rjv_A Putative SEL1 repeat pr 99.3 1.1E-09 3.6E-14 80.7 21.3 176 98-292 4-198 (212)
98 2pzi_A Probable serine/threoni 99.3 5.6E-11 1.9E-15 103.0 16.4 173 56-235 402-583 (681)
99 4ga2_A E3 SUMO-protein ligase 99.3 3E-11 1E-15 83.7 11.3 145 16-164 3-148 (150)
100 3rjv_A Putative SEL1 repeat pr 99.3 1.1E-09 3.7E-14 80.6 20.3 176 63-250 4-198 (212)
101 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.5E-09 5.2E-14 80.7 20.7 187 10-215 4-214 (225)
102 3dra_A Protein farnesyltransfe 99.3 7.3E-09 2.5E-13 80.0 24.8 231 58-299 46-294 (306)
103 3qou_A Protein YBBN; thioredox 99.3 3.7E-10 1.3E-14 87.3 17.3 169 112-290 114-283 (287)
104 4ga2_A E3 SUMO-protein ligase 99.3 5.9E-11 2E-15 82.2 10.9 142 54-199 6-148 (150)
105 2r5s_A Uncharacterized protein 99.3 1.6E-10 5.5E-15 82.5 13.4 162 12-177 8-171 (176)
106 3qou_A Protein YBBN; thioredox 99.3 3.1E-10 1.1E-14 87.7 16.0 167 42-212 114-282 (287)
107 2r5s_A Uncharacterized protein 99.3 1.6E-10 5.4E-15 82.5 13.1 162 119-290 10-172 (176)
108 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.6E-09 8.8E-14 79.5 19.5 186 44-250 3-214 (225)
109 2ifu_A Gamma-SNAP; membrane fu 99.2 3.1E-10 1.1E-14 88.7 15.1 232 22-284 3-254 (307)
110 2vsy_A XCC0866; transferase, g 99.2 6.9E-10 2.4E-14 94.4 18.4 155 23-181 2-159 (568)
111 2vsy_A XCC0866; transferase, g 99.2 6.2E-10 2.1E-14 94.7 17.9 152 59-214 3-157 (568)
112 4e6h_A MRNA 3'-END-processing 99.2 1.7E-08 5.7E-13 86.6 23.4 236 62-307 326-584 (679)
113 3q7a_A Farnesyltransferase alp 99.2 7.9E-08 2.7E-12 75.1 24.8 229 16-249 60-331 (349)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 1.3E-08 4.3E-13 79.5 19.2 199 23-241 29-253 (307)
115 3u3w_A Transcriptional activat 99.1 2.3E-08 7.8E-13 77.5 20.4 169 120-290 80-265 (293)
116 3q7a_A Farnesyltransferase alp 99.1 3.4E-07 1.2E-11 71.5 25.7 244 49-300 58-339 (349)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.9E-08 6.6E-13 73.9 17.9 129 12-145 8-151 (213)
118 3u3w_A Transcriptional activat 99.1 1.2E-07 4.1E-12 73.5 22.9 164 85-248 80-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.4E-08 8.1E-13 73.4 17.7 129 47-180 8-151 (213)
120 2c2l_A CHIP, carboxy terminus 99.1 3.1E-09 1.1E-13 81.8 13.0 195 44-249 3-199 (281)
121 4gco_A Protein STI-1; structur 99.0 1.8E-08 6.2E-13 67.3 14.6 96 47-144 15-110 (126)
122 1a17_A Serine/threonine protei 99.0 4.1E-08 1.4E-12 68.9 17.2 127 47-176 15-143 (166)
123 2qfc_A PLCR protein; TPR, HTH, 99.0 8.4E-08 2.9E-12 74.3 20.3 173 116-290 76-265 (293)
124 4gco_A Protein STI-1; structur 99.0 1.9E-08 6.6E-13 67.1 14.5 96 82-179 15-110 (126)
125 2c2l_A CHIP, carboxy terminus 99.0 2.7E-09 9.1E-14 82.2 11.6 197 8-214 2-199 (281)
126 1a17_A Serine/threonine protei 99.0 3E-08 1E-12 69.6 16.1 130 116-248 14-145 (166)
127 4e6h_A MRNA 3'-END-processing 99.0 9E-08 3.1E-12 82.1 20.9 218 28-249 327-570 (679)
128 3gyz_A Chaperone protein IPGC; 99.0 2.9E-09 1E-13 73.4 9.4 103 185-298 36-138 (151)
129 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 74.0 13.6 156 21-177 3-174 (203)
130 2e2e_A Formate-dependent nitri 99.0 9.2E-09 3.1E-13 73.3 12.2 123 20-145 20-145 (177)
131 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 74.0 13.3 156 92-248 4-175 (203)
132 1na0_A Designed protein CTPR3; 99.0 6.6E-08 2.3E-12 64.1 15.6 97 46-144 10-106 (125)
133 2lni_A Stress-induced-phosphop 99.0 2.7E-08 9.4E-13 66.9 13.5 96 11-108 17-112 (133)
134 2qfc_A PLCR protein; TPR, HTH, 99.0 1.7E-07 5.9E-12 72.6 19.6 170 44-213 74-265 (293)
135 2vyi_A SGTA protein; chaperone 99.0 1.8E-08 6E-13 67.6 12.3 117 46-165 13-129 (131)
136 4f3v_A ESX-1 secretion system 99.0 2.6E-08 9E-13 75.2 14.0 129 155-291 107-237 (282)
137 1p5q_A FKBP52, FK506-binding p 99.0 6.5E-08 2.2E-12 76.5 16.8 124 44-169 146-283 (336)
138 2lni_A Stress-induced-phosphop 98.9 4.4E-08 1.5E-12 65.9 13.8 115 44-161 15-129 (133)
139 3dss_A Geranylgeranyl transfer 98.9 4.9E-06 1.7E-10 64.8 26.7 222 21-250 40-305 (331)
140 1na0_A Designed protein CTPR3; 98.9 8.2E-08 2.8E-12 63.6 14.9 95 82-178 11-105 (125)
141 2vyi_A SGTA protein; chaperone 98.9 6.4E-08 2.2E-12 64.7 14.4 115 12-129 14-128 (131)
142 3gyz_A Chaperone protein IPGC; 98.9 2.5E-08 8.5E-13 68.7 12.3 96 82-179 38-133 (151)
143 2vgx_A Chaperone SYCD; alterna 98.9 8.5E-09 2.9E-13 71.1 10.0 98 185-291 21-118 (148)
144 2e2e_A Formate-dependent nitri 98.9 2.9E-08 1E-12 70.7 13.2 120 92-214 22-144 (177)
145 1p5q_A FKBP52, FK506-binding p 98.9 2.9E-08 9.9E-13 78.5 14.1 132 10-143 147-293 (336)
146 4f3v_A ESX-1 secretion system 98.9 1.8E-08 6.3E-13 76.1 11.0 187 22-214 18-237 (282)
147 2fbn_A 70 kDa peptidylprolyl i 98.9 6.7E-09 2.3E-13 75.5 8.3 151 16-169 10-175 (198)
148 2vgx_A Chaperone SYCD; alterna 98.9 2.2E-08 7.5E-13 69.0 10.0 95 152-248 23-117 (148)
149 3upv_A Heat shock protein STI1 98.8 2E-07 6.8E-12 62.1 13.5 94 48-143 7-100 (126)
150 1elw_A TPR1-domain of HOP; HOP 98.8 4.7E-07 1.6E-11 59.2 14.8 91 50-142 9-99 (118)
151 4b4t_Q 26S proteasome regulato 98.8 1E-06 3.6E-11 72.1 20.0 197 17-213 11-244 (434)
152 3sz7_A HSC70 cochaperone (SGT) 98.8 2.6E-07 8.9E-12 64.8 14.1 99 149-249 10-108 (164)
153 4gcn_A Protein STI-1; structur 98.8 1.1E-07 3.6E-12 63.6 11.5 114 185-303 8-122 (127)
154 3upv_A Heat shock protein STI1 98.8 3.5E-07 1.2E-11 60.9 14.1 94 13-108 7-100 (126)
155 1elw_A TPR1-domain of HOP; HOP 98.8 7E-07 2.4E-11 58.3 15.5 97 116-214 5-101 (118)
156 3dss_A Geranylgeranyl transfer 98.8 2.2E-05 7.5E-10 61.1 27.7 234 56-306 40-318 (331)
157 2xcb_A PCRH, regulatory protei 98.8 2.5E-07 8.4E-12 63.2 13.2 97 46-144 19-115 (142)
158 3q49_B STIP1 homology and U bo 98.8 5.4E-07 1.8E-11 60.9 14.7 98 184-290 8-105 (137)
159 2xcb_A PCRH, regulatory protei 98.8 7.7E-08 2.6E-12 65.8 10.3 94 118-213 21-114 (142)
160 2uy1_A Cleavage stimulation fa 98.8 1.7E-05 5.7E-10 66.0 26.0 95 11-108 16-117 (493)
161 4gcn_A Protein STI-1; structur 98.8 3.2E-07 1.1E-11 61.2 13.1 95 48-143 11-111 (127)
162 2kck_A TPR repeat; tetratricop 98.8 2E-07 6.8E-12 60.4 11.8 99 10-110 6-107 (112)
163 2fbn_A 70 kDa peptidylprolyl i 98.8 2.2E-07 7.6E-12 67.4 13.2 131 11-143 39-185 (198)
164 3q49_B STIP1 homology and U bo 98.8 4.9E-07 1.7E-11 61.1 13.9 99 44-144 8-106 (137)
165 4b4t_Q 26S proteasome regulato 98.8 1.5E-06 5.2E-11 71.2 19.3 192 56-247 15-243 (434)
166 3sz7_A HSC70 cochaperone (SGT) 98.7 8.4E-07 2.9E-11 62.2 15.2 99 44-144 10-108 (164)
167 2kck_A TPR repeat; tetratricop 98.7 3.2E-07 1.1E-11 59.4 11.8 91 121-212 12-104 (112)
168 2dba_A Smooth muscle cell asso 98.7 1.2E-06 4.2E-11 59.9 15.3 97 45-144 28-128 (148)
169 1elr_A TPR2A-domain of HOP; HO 98.7 3.9E-07 1.3E-11 60.9 12.4 124 185-312 4-127 (131)
170 1elr_A TPR2A-domain of HOP; HO 98.7 4.8E-07 1.6E-11 60.4 12.5 97 47-144 6-108 (131)
171 2dba_A Smooth muscle cell asso 98.7 1.9E-06 6.5E-11 58.9 15.3 99 79-179 27-128 (148)
172 1hxi_A PEX5, peroxisome target 98.7 5E-07 1.7E-11 59.7 11.7 96 12-109 19-114 (121)
173 1hxi_A PEX5, peroxisome target 98.7 7.2E-07 2.5E-11 58.9 12.2 94 84-179 21-114 (121)
174 1wao_1 Serine/threonine protei 98.7 3.3E-07 1.1E-11 76.0 12.8 117 125-244 16-134 (477)
175 2uy1_A Cleavage stimulation fa 98.7 2.2E-05 7.6E-10 65.3 23.4 124 152-290 288-412 (493)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.9E-06 6.5E-11 71.1 15.2 123 45-169 268-404 (457)
177 3ro3_A PINS homolog, G-protein 98.6 8.4E-07 2.9E-11 61.6 11.5 96 47-142 11-116 (164)
178 2xev_A YBGF; tetratricopeptide 98.6 4.5E-06 1.6E-10 55.6 14.4 91 52-144 9-105 (129)
179 1ihg_A Cyclophilin 40; ppiase 98.6 2.7E-06 9.3E-11 68.0 15.0 122 47-170 225-361 (370)
180 3ro3_A PINS homolog, G-protein 98.6 2.9E-07 1E-11 64.0 8.3 103 187-291 51-158 (164)
181 1wao_1 Serine/threonine protei 98.6 3.8E-07 1.3E-11 75.6 10.2 124 13-139 9-134 (477)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.3E-06 4.5E-11 72.0 13.3 130 11-142 269-413 (457)
183 2xev_A YBGF; tetratricopeptide 98.5 7.1E-06 2.4E-10 54.6 14.5 94 84-179 6-105 (129)
184 3rkv_A Putative peptidylprolyl 98.5 3.1E-06 1.1E-10 59.1 12.7 97 47-144 13-126 (162)
185 1ihg_A Cyclophilin 40; ppiase 98.5 3.2E-06 1.1E-10 67.6 13.7 124 116-241 224-362 (370)
186 3k9i_A BH0479 protein; putativ 98.5 4.8E-07 1.6E-11 59.4 7.3 86 23-109 3-90 (117)
187 1dce_A Protein (RAB geranylger 98.5 4.9E-05 1.7E-09 64.3 20.8 175 59-238 43-244 (567)
188 1dce_A Protein (RAB geranylger 98.5 3.3E-05 1.1E-09 65.4 19.5 174 24-202 43-243 (567)
189 3k9i_A BH0479 protein; putativ 98.5 1.3E-06 4.6E-11 57.2 8.9 86 93-179 3-90 (117)
190 3rkv_A Putative peptidylprolyl 98.4 9.1E-06 3.1E-10 56.7 13.0 97 117-214 13-126 (162)
191 3n71_A Histone lysine methyltr 98.4 4.4E-06 1.5E-10 69.1 12.1 123 55-177 319-462 (490)
192 3n71_A Histone lysine methyltr 98.4 1.2E-06 4E-11 72.4 8.7 130 159-291 318-464 (490)
193 2if4_A ATFKBP42; FKBP-like, al 98.4 2.1E-06 7.1E-11 67.9 9.5 147 12-179 181-328 (338)
194 2if4_A ATFKBP42; FKBP-like, al 98.4 3.1E-06 1.1E-10 66.9 10.3 130 116-249 180-328 (338)
195 2l6j_A TPR repeat-containing p 98.3 5.6E-06 1.9E-10 53.4 9.5 88 220-317 4-98 (111)
196 2hr2_A Hypothetical protein; a 98.3 1.6E-05 5.6E-10 54.4 11.8 96 47-143 13-130 (159)
197 1klx_A Cysteine rich protein B 98.3 4.5E-05 1.6E-09 51.5 14.1 110 130-250 10-127 (138)
198 1klx_A Cysteine rich protein B 98.3 4.2E-05 1.5E-09 51.6 13.5 113 163-293 8-128 (138)
199 2hr2_A Hypothetical protein; a 98.3 2.6E-05 8.9E-10 53.3 12.0 95 82-177 13-129 (159)
200 2l6j_A TPR repeat-containing p 98.2 1.8E-06 6.2E-11 55.8 4.7 92 9-102 3-100 (111)
201 2kat_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 49.1 10.8 78 99-178 4-81 (115)
202 1na3_A Designed protein CTPR2; 98.1 6.3E-05 2.2E-09 46.3 10.4 27 117-143 45-71 (91)
203 1na3_A Designed protein CTPR2; 98.1 7.3E-05 2.5E-09 46.0 10.0 78 46-125 10-87 (91)
204 2kat_A Uncharacterized protein 98.0 0.00011 3.7E-09 47.7 11.1 78 64-143 4-81 (115)
205 1zu2_A Mitochondrial import re 98.0 3.3E-05 1.1E-09 52.7 8.2 83 60-144 17-120 (158)
206 3ma5_A Tetratricopeptide repea 98.0 4.2E-05 1.4E-09 48.3 8.2 85 219-311 6-91 (100)
207 1zu2_A Mitochondrial import re 98.0 6.6E-05 2.3E-09 51.2 9.4 87 91-179 13-120 (158)
208 3ma5_A Tetratricopeptide repea 97.9 0.00014 4.7E-09 45.9 8.8 61 81-142 8-68 (100)
209 3mkq_A Coatomer beta'-subunit; 97.7 0.0023 7.8E-08 56.9 17.5 45 161-211 663-707 (814)
210 3qww_A SET and MYND domain-con 97.7 5.5E-05 1.9E-09 61.5 6.1 91 197-290 310-410 (433)
211 3ly7_A Transcriptional activat 97.6 0.0043 1.5E-07 48.7 15.5 64 148-213 275-338 (372)
212 3qwp_A SET and MYND domain-con 97.6 0.00018 6.2E-09 58.5 7.9 96 192-290 294-399 (429)
213 3qwp_A SET and MYND domain-con 97.5 0.0012 4E-08 53.8 11.2 61 117-177 331-398 (429)
214 2kc7_A BFR218_protein; tetratr 97.5 0.00077 2.6E-08 42.1 8.1 54 90-144 10-64 (99)
215 3qww_A SET and MYND domain-con 97.5 0.00056 1.9E-08 55.6 8.8 85 164-248 312-410 (433)
216 3ly7_A Transcriptional activat 97.4 0.034 1.2E-06 43.7 18.2 144 41-189 190-347 (372)
217 2kc7_A BFR218_protein; tetratr 97.3 0.0016 5.6E-08 40.5 8.2 58 122-180 7-65 (99)
218 3bee_A Putative YFRE protein; 97.3 0.0031 1.1E-07 38.9 8.7 65 219-291 5-72 (93)
219 3mkq_B Coatomer subunit alpha; 97.2 0.019 6.4E-07 39.9 13.0 130 122-288 12-141 (177)
220 3mkq_A Coatomer beta'-subunit; 97.2 0.031 1E-06 49.7 18.0 76 84-177 633-708 (814)
221 3bee_A Putative YFRE protein; 97.1 0.011 3.8E-07 36.4 9.8 48 26-74 25-72 (93)
222 1pc2_A Mitochondria fission pr 97.1 0.0041 1.4E-07 42.0 8.2 83 165-249 13-100 (152)
223 2v5f_A Prolyl 4-hydroxylase su 97.0 0.012 4.1E-07 37.1 10.0 30 115-144 46-75 (104)
224 2v5f_A Prolyl 4-hydroxylase su 97.0 0.012 4.2E-07 37.1 9.7 62 48-109 8-75 (104)
225 1pc2_A Mitochondria fission pr 96.9 0.014 4.8E-07 39.4 9.7 67 78-144 30-100 (152)
226 4h7y_A Dual specificity protei 96.7 0.032 1.1E-06 37.4 10.0 113 44-159 12-137 (161)
227 3u64_A Protein TP_0956; tetrat 96.7 0.029 1E-06 42.4 10.9 88 165-252 178-272 (301)
228 4h7y_A Dual specificity protei 96.7 0.071 2.4E-06 35.7 12.0 65 127-193 72-136 (161)
229 3lvg_A Clathrin heavy chain 1; 96.7 2.7E-06 9.2E-11 68.2 -11.2 252 9-282 53-324 (624)
230 1wy6_A Hypothetical protein ST 96.5 0.092 3.1E-06 34.5 15.0 61 154-215 95-155 (172)
231 3u64_A Protein TP_0956; tetrat 96.4 0.062 2.1E-06 40.7 11.2 106 131-246 179-295 (301)
232 1wy6_A Hypothetical protein ST 96.3 0.11 3.8E-06 34.1 15.3 141 20-182 17-157 (172)
233 3mkq_B Coatomer subunit alpha; 96.3 0.16 5.4E-06 35.3 16.4 45 56-106 16-60 (177)
234 4gns_B Protein CSD3, chitin bi 96.2 0.17 5.9E-06 44.1 14.3 128 153-288 251-397 (754)
235 1nzn_A CGI-135 protein, fissio 96.2 0.082 2.8E-06 34.3 9.3 84 164-249 15-103 (126)
236 1nzn_A CGI-135 protein, fissio 95.9 0.081 2.8E-06 34.4 8.3 81 63-144 19-103 (126)
237 4gns_B Protein CSD3, chitin bi 95.7 0.087 3E-06 45.9 10.2 128 14-142 252-398 (754)
238 4ady_A RPN2, 26S proteasome re 94.9 2.1 7.1E-05 38.5 18.6 257 20-290 384-657 (963)
239 2ff4_A Probable regulatory pro 94.7 0.27 9.4E-06 39.4 9.7 70 153-223 174-248 (388)
240 2ff4_A Probable regulatory pro 94.6 0.25 8.5E-06 39.7 9.4 73 117-190 173-250 (388)
241 1v54_E Cytochrome C oxidase po 94.2 0.54 1.9E-05 28.9 9.8 63 165-228 25-87 (109)
242 4b4t_P 26S proteasome regulato 93.7 2.5 8.4E-05 34.6 17.8 187 24-211 30-244 (445)
243 4fhn_B Nucleoporin NUP120; pro 93.7 2.6 8.9E-05 39.3 15.1 62 118-179 902-967 (1139)
244 3o48_A Mitochondria fission 1 93.5 0.97 3.3E-05 29.6 9.0 73 181-255 36-111 (134)
245 2y69_E Cytochrome C oxidase su 93.2 1.1 3.8E-05 29.3 9.8 63 165-228 68-130 (152)
246 3o48_A Mitochondria fission 1 93.1 1.2 4.1E-05 29.2 9.3 46 98-143 61-106 (134)
247 3ffl_A Anaphase-promoting comp 92.7 1 3.6E-05 30.8 8.2 68 222-289 65-149 (167)
248 3ffl_A Anaphase-promoting comp 92.6 1.1 3.8E-05 30.6 8.3 128 4-144 12-151 (167)
249 3lvg_A Clathrin heavy chain 1; 92.4 0.0063 2.1E-07 49.5 -3.2 187 8-210 81-287 (624)
250 4fhn_B Nucleoporin NUP120; pro 91.8 8.4 0.00029 36.0 15.9 193 85-289 817-1048(1139)
251 4b4t_R RPN7, 26S proteasome re 91.2 3.9 0.00013 33.3 11.7 99 81-179 132-237 (429)
252 4b4t_P 26S proteasome regulato 90.5 6.3 0.00022 32.3 18.8 171 7-178 53-246 (445)
253 1y8m_A FIS1; mitochondria, unk 90.4 2.7 9.4E-05 27.9 11.6 72 182-255 36-110 (144)
254 4b4t_R RPN7, 26S proteasome re 90.1 5.1 0.00017 32.6 11.5 98 116-213 132-236 (429)
255 1v54_E Cytochrome C oxidase po 89.9 2.3 7.9E-05 26.3 10.6 58 193-250 17-75 (109)
256 1y8m_A FIS1; mitochondria, unk 89.8 3.1 0.00011 27.6 11.4 67 78-144 37-106 (144)
257 1zbp_A Hypothetical protein VP 89.7 5.1 0.00018 30.0 11.1 117 17-144 4-129 (273)
258 3esl_A Checkpoint serine/threo 87.4 6.1 0.00021 28.1 9.7 57 198-254 92-149 (202)
259 2y69_E Cytochrome C oxidase su 86.2 5.4 0.00018 26.2 10.6 63 200-270 68-130 (152)
260 1wdy_A 2-5A-dependent ribonucl 85.1 9.5 0.00032 28.4 9.9 209 14-242 6-238 (285)
261 3txn_A 26S proteasome regulato 84.8 14 0.00047 29.7 18.4 165 46-211 20-207 (394)
262 4ady_A RPN2, 26S proteasome re 83.7 26 0.00087 31.9 21.3 229 15-248 416-657 (963)
263 3lpz_A GET4 (YOR164C homolog); 82.7 15 0.00052 28.6 19.6 140 54-212 64-214 (336)
264 3txn_A 26S proteasome regulato 79.8 22 0.00075 28.5 21.3 165 12-177 21-208 (394)
265 2wpv_A GET4, UPF0363 protein Y 79.1 20 0.00068 27.7 19.9 25 184-208 133-157 (312)
266 4a1g_A Mitotic checkpoint seri 77.1 14 0.00048 24.9 8.8 51 239-295 84-134 (152)
267 3lpz_A GET4 (YOR164C homolog); 76.3 25 0.00087 27.4 21.7 25 184-208 135-159 (336)
268 2wpv_A GET4, UPF0363 protein Y 76.1 25 0.00084 27.1 19.4 168 47-248 35-216 (312)
269 2fe3_A Peroxide operon regulat 75.9 15 0.0005 24.5 7.4 64 244-315 11-74 (145)
270 2xig_A Ferric uptake regulatio 74.9 13 0.00044 25.0 6.6 64 244-315 16-79 (150)
271 1mzb_A Ferric uptake regulatio 74.0 15 0.00053 24.0 6.7 63 245-315 8-71 (136)
272 2w57_A Ferric uptake regulatio 72.1 14 0.00049 24.7 6.3 63 244-314 6-69 (150)
273 1zbp_A Hypothetical protein VP 71.9 29 0.00099 26.0 13.1 123 158-291 5-129 (273)
274 2fu4_A Ferric uptake regulatio 71.9 5.1 0.00018 23.5 3.7 60 36-96 8-68 (83)
275 2wvi_A Mitotic checkpoint seri 71.5 21 0.00074 24.4 8.9 50 204-253 79-129 (164)
276 3eyy_A Putative iron uptake re 71.2 14 0.00049 24.5 6.1 62 244-314 8-69 (145)
277 2uwj_G Type III export protein 70.8 16 0.00054 22.5 7.6 49 160-214 49-97 (115)
278 2p58_C Putative type III secre 70.0 17 0.00057 22.5 8.3 15 124-138 49-63 (116)
279 1qsa_A Protein (soluble lytic 69.9 53 0.0018 28.3 24.8 253 14-290 76-347 (618)
280 4gq2_M Nucleoporin NUP120; bet 69.3 57 0.002 29.9 11.2 115 191-311 816-950 (950)
281 4ets_A Ferric uptake regulatio 68.6 21 0.00071 24.4 6.5 72 236-315 13-87 (162)
282 2uwj_G Type III export protein 67.6 19 0.00065 22.2 8.0 18 127-144 80-97 (115)
283 3eiq_C Programmed cell death p 67.3 44 0.0015 26.4 12.1 207 83-305 57-296 (358)
284 1wdy_A 2-5A-dependent ribonucl 67.2 21 0.00071 26.5 7.1 211 50-286 7-240 (285)
285 2p58_C Putative type III secre 66.9 20 0.00068 22.2 8.5 50 90-145 50-99 (116)
286 3bu8_A Telomeric repeat-bindin 65.8 35 0.0012 24.5 7.5 22 88-109 122-143 (235)
287 2zu6_B Programmed cell death p 65.6 44 0.0015 25.7 10.8 59 83-143 6-66 (307)
288 2ion_A PDCD4, programmed cell 63.1 32 0.0011 23.2 7.2 21 86-106 15-35 (152)
289 4a1g_A Mitotic checkpoint seri 62.5 33 0.0011 23.1 9.6 51 204-254 84-135 (152)
290 2ion_A PDCD4, programmed cell 61.3 34 0.0012 23.0 7.0 66 118-184 12-79 (152)
291 3kea_A K1L; tropism, ANK repea 59.4 52 0.0018 24.6 8.0 183 52-255 35-223 (285)
292 3esl_A Checkpoint serine/threo 58.8 46 0.0016 23.7 12.1 97 123-219 42-149 (202)
293 3eu9_A Huntingtin-interacting 58.8 32 0.0011 24.6 6.6 49 17-69 13-63 (240)
294 2fu4_A Ferric uptake regulatio 58.7 24 0.00083 20.4 6.7 62 245-314 7-69 (83)
295 4aez_C MAD3, mitotic spindle c 58.5 39 0.0013 24.5 6.5 50 204-253 133-183 (223)
296 1k1a_A B-cell lymphoma 3-encod 58.0 48 0.0017 23.7 10.1 19 56-74 17-35 (241)
297 2nsz_A Programmed cell death p 57.1 37 0.0013 22.0 8.5 21 86-106 13-33 (129)
298 2ko4_A Mediator of RNA polymer 56.9 26 0.0009 20.3 4.3 33 5-37 31-63 (81)
299 2b7e_A PRE-mRNA processing pro 56.9 14 0.00046 20.2 3.0 36 278-313 2-38 (59)
300 3mwm_A ZUR, putative metal upt 56.7 20 0.00069 23.6 4.6 44 16-59 19-62 (139)
301 2d2s_A Exocyst complex compone 56.1 57 0.0019 23.9 10.7 28 184-211 90-117 (235)
302 2o03_A Probable zinc uptake re 55.6 25 0.00085 22.8 4.9 50 266-315 14-63 (131)
303 2o03_A Probable zinc uptake re 55.5 22 0.00076 23.1 4.7 44 16-59 16-59 (131)
304 3mwm_A ZUR, putative metal upt 55.4 22 0.00075 23.4 4.6 50 266-315 17-66 (139)
305 4ets_A Ferric uptake regulatio 53.9 47 0.0016 22.6 6.2 22 88-109 40-61 (162)
306 1k1a_A B-cell lymphoma 3-encod 53.7 51 0.0017 23.5 7.0 86 16-105 12-101 (241)
307 3eyy_A Putative iron uptake re 53.4 46 0.0016 22.0 6.3 13 132-144 34-46 (145)
308 3mv2_A Coatomer subunit alpha; 51.8 82 0.0028 24.4 9.3 29 264-292 209-237 (325)
309 3kea_A K1L; tropism, ANK repea 51.5 73 0.0025 23.8 8.0 204 16-246 34-244 (285)
310 3ltm_A Alpha-REP4; protein eng 51.4 60 0.002 22.7 18.6 154 43-213 31-184 (211)
311 4aez_C MAD3, mitotic spindle c 51.2 67 0.0023 23.3 8.9 56 237-298 131-186 (223)
312 3f3f_C Nucleoporin NUP85; stru 51.0 85 0.0029 26.6 8.2 73 95-169 496-568 (570)
313 2xig_A Ferric uptake regulatio 51.0 52 0.0018 21.9 8.0 43 120-162 31-73 (150)
314 3hra_A Ankyrin repeat family p 50.1 60 0.002 22.4 6.8 60 195-255 113-173 (201)
315 2wvi_A Mitotic checkpoint seri 49.8 59 0.002 22.2 9.1 73 146-221 59-132 (164)
316 1ug3_A EIF4GI, eukaryotic prot 49.5 86 0.0029 24.5 7.8 25 83-107 14-38 (339)
317 2d2s_A Exocyst complex compone 49.4 74 0.0025 23.3 10.4 89 51-142 24-118 (235)
318 2fe3_A Peroxide operon regulat 49.4 54 0.0019 21.7 7.5 12 132-143 38-49 (145)
319 3eiq_C Programmed cell death p 48.0 1E+02 0.0034 24.4 14.9 63 153-216 220-284 (358)
320 3jxi_A Vanilloid receptor-rela 47.7 6.5 0.00022 29.0 1.2 56 16-71 8-72 (260)
321 2w57_A Ferric uptake regulatio 47.6 60 0.002 21.6 6.3 11 133-143 35-45 (150)
322 1mzb_A Ferric uptake regulatio 47.5 56 0.0019 21.3 6.8 14 131-144 34-47 (136)
323 3ljn_A Hypothetical protein; a 47.1 98 0.0034 24.0 9.5 85 193-287 178-266 (364)
324 3t8k_A Uncharacterized protein 45.4 73 0.0025 22.0 6.7 132 160-299 13-151 (186)
325 1oai_A Nuclear RNA export fact 44.6 21 0.00073 19.4 2.6 23 23-45 33-56 (59)
326 2nsz_A Programmed cell death p 43.7 64 0.0022 20.9 9.3 67 118-185 10-78 (129)
327 3bqo_A Telomeric repeat-bindin 43.4 86 0.0029 22.2 8.9 23 122-144 124-146 (211)
328 3hra_A Ankyrin repeat family p 42.5 80 0.0027 21.7 7.1 93 195-297 79-173 (201)
329 4b4t_S RPN3, 26S proteasome re 40.7 1.6E+02 0.0056 24.7 11.9 24 13-36 234-257 (523)
330 3pvs_A Replication-associated 40.4 1.5E+02 0.0052 24.2 13.4 54 162-215 267-325 (447)
331 2ijq_A Hypothetical protein; s 38.1 94 0.0032 21.2 7.8 51 23-73 45-103 (161)
332 4gq2_M Nucleoporin NUP120; bet 37.4 2.5E+02 0.0085 25.8 11.2 50 150-199 897-950 (950)
333 1bpo_A Protein (clathrin); cla 36.8 1.8E+02 0.0062 24.1 10.2 97 75-173 356-452 (494)
334 3f3f_C Nucleoporin NUP85; stru 36.2 1.9E+02 0.0066 24.5 8.1 87 47-135 481-569 (570)
335 3bu8_A Telomeric repeat-bindin 36.1 1.2E+02 0.0041 21.9 11.1 49 96-144 88-143 (235)
336 3eu9_A Huntingtin-interacting 35.9 1.1E+02 0.0039 21.5 7.8 47 54-104 15-63 (240)
337 2r9g_A AAA ATPase, central reg 35.8 1.2E+02 0.004 21.6 9.8 17 164-180 28-44 (204)
338 3ltj_A Alpharep-4; protein eng 35.3 1.1E+02 0.0037 21.1 18.3 171 43-233 26-196 (201)
339 2ijq_A Hypothetical protein; s 35.2 1.1E+02 0.0036 20.9 8.0 50 94-143 46-103 (161)
340 4b4t_O 26S proteasome regulato 34.7 1.4E+02 0.0047 23.9 7.0 57 156-212 82-154 (393)
341 3t5v_B Nuclear mRNA export pro 34.4 94 0.0032 25.5 6.0 61 188-248 179-248 (455)
342 2rg8_A Programmed cell death p 34.2 1.1E+02 0.0038 20.8 5.7 23 120-142 15-37 (165)
343 4b4t_S RPN3, 26S proteasome re 33.7 2.1E+02 0.0073 24.0 11.8 16 236-251 416-431 (523)
344 3ygs_P Procaspase 9; apoptosis 33.5 81 0.0028 19.1 4.6 39 234-283 51-89 (97)
345 3bqo_A Telomeric repeat-bindin 31.4 78 0.0027 22.4 4.3 24 86-109 123-146 (211)
346 1ug3_A EIF4GI, eukaryotic prot 31.3 1.3E+02 0.0045 23.4 6.3 26 47-72 13-38 (339)
347 1bd8_A P19INK4D CDK4/6 inhibit 31.1 49 0.0017 21.6 3.5 20 16-35 5-24 (156)
348 3ljn_A Hypothetical protein; a 31.0 1.4E+02 0.0048 23.1 6.6 211 14-245 21-266 (364)
349 2zu6_B Programmed cell death p 30.4 1.9E+02 0.0063 22.3 7.8 80 118-198 169-250 (307)
350 1bpo_A Protein (clathrin); cla 30.2 2.3E+02 0.008 23.4 10.1 98 145-244 356-453 (494)
351 3lxu_X Tripeptidyl-peptidase 2 30.2 3E+02 0.01 26.5 9.0 80 61-143 1265-1344(1354)
352 3ltm_A Alpha-REP4; protein eng 29.8 1.4E+02 0.0048 20.7 18.1 138 43-196 62-199 (211)
353 3c1d_A Protein ORAA, regulator 29.6 1.3E+02 0.0044 20.3 12.2 49 97-147 47-95 (159)
354 3qil_A Clathrin heavy chain 1; 29.6 98 0.0033 19.9 4.2 51 48-101 35-85 (125)
355 2r9g_A AAA ATPase, central reg 28.9 1.6E+02 0.0054 21.0 10.5 37 127-164 26-62 (204)
356 3t5v_B Nuclear mRNA export pro 28.7 92 0.0031 25.6 5.1 69 222-290 178-248 (455)
357 3twr_A Tankyrase-2; ankyrin re 28.7 1.3E+02 0.0043 19.8 5.6 18 17-34 12-29 (165)
358 3t8k_A Uncharacterized protein 27.2 1.5E+02 0.0052 20.3 9.5 162 124-294 12-183 (186)
359 2rg8_A Programmed cell death p 27.0 1.2E+02 0.0042 20.6 4.8 23 85-107 15-37 (165)
360 2crb_A Nuclear receptor bindin 26.3 1.1E+02 0.0039 18.5 5.4 27 263-289 16-42 (97)
361 2keb_A DNA polymerase subunit 26.2 1.2E+02 0.004 18.6 6.3 25 136-160 30-54 (101)
362 3lxu_X Tripeptidyl-peptidase 2 25.8 4.6E+02 0.016 25.3 9.8 31 25-56 1122-1152(1354)
363 2qfz_A TBC1 domain family memb 25.7 1.4E+02 0.0049 23.2 5.7 77 66-142 230-313 (345)
364 3pvs_A Replication-associated 25.2 2.8E+02 0.0096 22.7 14.0 38 127-164 267-304 (447)
365 4fke_A Aminopeptidase N; zinc 25.2 4E+02 0.014 24.4 16.9 166 14-182 690-863 (909)
366 3ctd_A Putative ATPase, AAA fa 24.7 2E+02 0.0067 20.7 9.2 20 129-148 49-68 (213)
367 1wgl_A TOLL-interacting protei 24.4 62 0.0021 17.6 2.3 16 198-213 36-51 (59)
368 1q2z_A ATP-dependent DNA helic 24.1 36 0.0012 21.8 1.6 51 235-294 42-95 (120)
369 3bge_A Predicted ATPase; struc 23.9 2E+02 0.0067 20.4 9.3 22 128-149 20-41 (201)
370 2qfz_A TBC1 domain family memb 23.6 79 0.0027 24.7 3.8 45 207-251 231-275 (345)
371 2etb_A Transient receptor pote 23.5 1.2E+02 0.0043 21.8 4.8 25 17-41 6-30 (256)
372 2f6m_A Suppressor protein STP2 23.1 1.1E+02 0.0037 17.1 5.3 41 119-160 6-46 (65)
373 3b7b_A Euchromatic histone-lys 23.0 1.3E+02 0.0044 21.3 4.8 207 16-248 14-235 (237)
374 1rw2_A ATP-dependent DNA helic 22.5 85 0.0029 21.1 3.2 52 234-294 72-126 (152)
375 3bge_A Predicted ATPase; struc 22.5 2.1E+02 0.0073 20.3 9.9 23 92-114 19-41 (201)
376 3cz6_A DNA-binding protein RAP 22.3 26 0.0009 23.7 0.7 48 250-297 15-62 (168)
377 3jxi_A Vanilloid receptor-rela 22.3 2.2E+02 0.0076 20.4 9.7 24 228-255 145-171 (260)
378 2rpa_A Katanin P60 ATPase-cont 22.1 97 0.0033 18.0 3.0 25 266-290 16-40 (78)
379 2p22_A Suppressor protein STP2 21.7 2.1E+02 0.007 19.8 5.7 48 115-163 111-158 (174)
380 1uzc_A Hypothetical protein FL 20.3 1.3E+02 0.0045 17.0 3.4 37 277-314 13-50 (71)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.5e-35 Score=240.21 Aligned_cols=198 Identities=19% Similarity=0.269 Sum_probs=177.2
Q ss_pred CCCCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---------hHHHHHHHHH
Q 039029 1 MKSRGVQPDSY-TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN---------LEMAFSFRDE 70 (319)
Q Consensus 1 M~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~ 70 (319)
|+++++.+.+. .++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. .+.|.++|++
T Consensus 16 ~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~ 95 (501)
T 4g26_A 16 AKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95 (501)
T ss_dssp --------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH
T ss_pred HHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH
Confidence 35566665544 5888999999999999999999999999999999999999999987664 6889999999
Q ss_pred HHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH
Q 039029 71 MVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM 150 (319)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (319)
|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 96 M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
.+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.1e-34 Score=239.89 Aligned_cols=185 Identities=19% Similarity=0.308 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc---------cHHHHHHHHHHHhhCCCCccHHHH
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN---------RMIEADQLFENFLAKGMLPDIVMF 188 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 188 (319)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+ .++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444322 244455555555555555555555
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHH
Q 039029 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (319)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+. .+|+.|
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~-------~ty~~L 181 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE-------PELAAL 181 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH-------HHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH-------HHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555544333 455555
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh
Q 039029 269 IQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS 309 (319)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (319)
+.+|++.|++++|.+++++|.+.|..|+..||..++..|..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555544443
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-30 Score=222.47 Aligned_cols=303 Identities=10% Similarity=-0.025 Sum_probs=261.3
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCC-------------------------------------------
Q 039029 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGL------------------------------------------- 41 (319)
Q Consensus 5 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 41 (319)
|.+++..+|+.++..|.+.|++++|+++|+++.+.++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 5566788999999999999999999999998865432
Q ss_pred ---------------------------CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 039029 42 ---------------------------VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94 (319)
Q Consensus 42 ---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 1566778888888899999999999999988775 337788888999999999
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHH
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
++++|..+++++.+..+ .+..++..++..|.+.|++++|.++|+++.+.. +.+..++..++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999886543 478899999999999999999999999998864 5578899999999999999999999999
Q ss_pred HHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc----C
Q 039029 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR----G 250 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 250 (319)
++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 9988754 378899999999999999999999999998764 457889999999999999999999999999876 3
Q ss_pred CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
..|+. ...+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+...|.+.|++++|..
T Consensus 510 ~~p~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 510 SNEKP-----WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp CCSGG-----GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhh-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 34431 14789999999999999999999999999874 4488999999999999999999863
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-30 Score=219.71 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=223.6
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHhC---------------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 039029 6 VQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN---------------GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDE 70 (319)
Q Consensus 6 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 70 (319)
.+++..+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888999999999999999988853221 1233577899999999999999999999988
Q ss_pred HHHcCCC----------------------------------------------------------------------cCh
Q 039029 71 MVKQGIM----------------------------------------------------------------------PTA 80 (319)
Q Consensus 71 ~~~~~~~----------------------------------------------------------------------~~~ 80 (319)
+.+.+.. ++.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 8765321 344
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+++.++..+.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 45555666666666666666666666654433 55566666666666666666666666666543 45677788888888
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (319)
.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888776532 257788888888888888888888888887654 446778888888888888888888
Q ss_pred HHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCCC--hHHHHHHHHHhhhcchhh
Q 039029 241 RLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----GITPD--DNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~ 314 (319)
++|+++.+.. |+ +..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+++
T Consensus 462 ~~~~~~~~~~--~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 462 EYLQSSYALF--QY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHHHHHHHC--CC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhC--CC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 8888887753 22 3478889999999999999999999998876 66777 678888999999999998
Q ss_pred hhc
Q 039029 315 ESS 317 (319)
Q Consensus 315 ~A~ 317 (319)
+|.
T Consensus 534 ~A~ 536 (597)
T 2xpi_A 534 AAI 536 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 885
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=187.25 Aligned_cols=294 Identities=15% Similarity=0.052 Sum_probs=192.3
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+..+|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455666666666666666666666655532 1234455666666666666666666666665543 123344555555
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+...|++++|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666666554332 45566666666666666666666666666653 3345566666666666666666
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
|...+++.....+. +..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666655322 46677777777888888888888888877653 33456777778888888888888888888777
Q ss_pred cCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 249 RGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.. |+ +..++..+...+...|++++|...++++.+. .+.+..++..+...+.+.|++++|.
T Consensus 300 ~~--p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 300 LC--PT------HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HC--TT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred hC--cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 53 22 3367788888888888888888888888775 2345677888888888888888875
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2e-25 Score=181.15 Aligned_cols=293 Identities=14% Similarity=0.034 Sum_probs=253.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|+..|+++.+.. +.+...|..+..+
T Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 4556677788889999999999999888764 4478899999999999999999999999998874 3356788999999
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999887544 66778888899999999999999999999874 55678999999999999999999
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
...|+++.+..+. +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+++.+.
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999987543 57888999999999999999999999988764 335778899999999999999999999999985
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.|+. ..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.
T Consensus 267 --~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 267 --QPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp --CSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred --CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 3433 368999999999999999999999999986 3567889999999999999999986
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=5.8e-25 Score=181.94 Aligned_cols=300 Identities=13% Similarity=0.070 Sum_probs=252.3
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345678889999999999999999999998763 3478899999999999999999999999999875 34678899999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCCh---HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCccHHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDS---ITYNIL------------INGYCRCGNAKKAFSLHDEMIHKGIQPTMLT 152 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
.++...|++++|...|+++.+..+. +. ..+..+ ...+...|++++|...++++.... +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999987543 44 555555 445899999999999999999875 567889
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHH------
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL------ 226 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 226 (319)
+..+..++.+.|++++|...|+++.+... .+..++..+...|...|++++|...++++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 99999999999999999999999987643 368899999999999999999999999998753 2334444444
Q ss_pred ------HHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHH
Q 039029 227 ------MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300 (319)
Q Consensus 227 ------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 300 (319)
...+...|++++|..+|+++.+.. |+... .....|..+...+.+.|++++|...++++.... +.+...|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAE--YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 788999999999999999998853 43210 002478889999999999999999999998762 4468899
Q ss_pred HHHHHHhhhcchhhhhcC
Q 039029 301 FSLIEGIASVDKAAESSN 318 (319)
Q Consensus 301 ~~l~~~~~~~g~~~~A~~ 318 (319)
..+..+|...|++++|..
T Consensus 333 ~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHH
Confidence 999999999999999863
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=6e-23 Score=162.77 Aligned_cols=296 Identities=14% Similarity=0.006 Sum_probs=248.4
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHH
Q 039029 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYN 84 (319)
Q Consensus 5 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
+++.+...+..++..+...|++++|+++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 4567778888999999999999999999999988643 356677788889999999999999999999875 34678889
Q ss_pred HHHHHHHHcC-chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 85 LLIHELLMER-KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 85 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
.+...+...| ++++|...+++..+..+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 9999999999 999999999999987544 67889999999999999999999999999875 44567778899999999
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHcCCc
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK--------VHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~ 235 (319)
|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. .+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999987543 67889999999999999999999999986642 13345688999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHh-hhcchhh
Q 039029 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGI-ASVDKAA 314 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 314 (319)
+++|...++++.+.. |+. ...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~--~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI--PQN------ASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS--TTC------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC--ccc------hHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999999864 332 3789999999999999999999999988752 33667777777777 5566554
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2e-22 Score=161.53 Aligned_cols=300 Identities=12% Similarity=0.057 Sum_probs=246.6
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
|+..+..+...+.+.|++++|+..|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 355678888999999999999999999988643 367889999999999999999999999999874 336788899999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCC--CChHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIV--PDSITYNIL------------INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
++...|++++|...+++..+..+. .+...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999987430 144555544 578899999999999999999875 56788999
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH----------
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN---------- 224 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 224 (319)
.+..++...|++++|...++++..... .+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999988753 368889999999999999999999999998764 22333333
Q ss_pred --HHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHH
Q 039029 225 --TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302 (319)
Q Consensus 225 --~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 302 (319)
.+...+...|++++|...++++.+.. |+... .....+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE--PSVAE--YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 23667889999999999999998854 33210 011335567889999999999999999999862 447888999
Q ss_pred HHHHhhhcchhhhhcC
Q 039029 303 LIEGIASVDKAAESSN 318 (319)
Q Consensus 303 l~~~~~~~g~~~~A~~ 318 (319)
+...+...|++++|..
T Consensus 312 ~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999998863
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-22 Score=167.25 Aligned_cols=282 Identities=12% Similarity=0.034 Sum_probs=235.9
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh---hhH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA---STY 83 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 83 (319)
+.+..+|..+...+.+.|++++|+..|+++.+.+. .+..++..+..++...|++++|.+.|+++.+... .+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHH
Confidence 34577889999999999999999999999998753 3678899999999999999999999999998742 233 455
Q ss_pred HHH------------HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH
Q 039029 84 NLL------------IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML 151 (319)
Q Consensus 84 ~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (319)
..+ ...+...|++++|...++++.+..+. +...+..+..+|...|++++|...++++.+.. +.+..
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 212 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 444 44588999999999999999887543 78899999999999999999999999998874 56789
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHH------------HHHHhcCCcHHHHHHHHHHHHhCCCCCC
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL------------IDGHCTNGNIERAFSLLKEMDRMKVHPD 219 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
++..+..++...|++++|...++++...... +...+..+ ...+...|++++|...|+++.+.. |+
T Consensus 213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~ 289 (450)
T 2y4t_A 213 AFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 289 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 9999999999999999999999999876433 44445444 788999999999999999998753 44
Q ss_pred -----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Q 039029 220 -----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 220 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 294 (319)
...+..+...+.+.|++++|...++++.+.. |+ +..+|..+..+|...|++++|...++++.+. .
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~ 359 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PD------NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--N 359 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--S
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 3477888999999999999999999998753 33 3378999999999999999999999999985 4
Q ss_pred CC-hHHHHHHHH
Q 039029 295 PD-DNTYFSLIE 305 (319)
Q Consensus 295 ~~-~~~~~~l~~ 305 (319)
|+ ...+..+..
T Consensus 360 p~~~~~~~~l~~ 371 (450)
T 2y4t_A 360 ENDQQIREGLEK 371 (450)
T ss_dssp SSCHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 54 555555553
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.1e-22 Score=166.47 Aligned_cols=302 Identities=11% Similarity=-0.017 Sum_probs=193.2
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM---------- 77 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 77 (319)
|+..+|..+..++.+.|++++|+..++++.+.++ .+..++..+..++...|++++|...|+.+...+..
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 6677777777777777888888887777776542 35567777777777777777777777766554310
Q ss_pred --------------------------------------------------------------------------------
Q 039029 78 -------------------------------------------------------------------------------- 77 (319)
Q Consensus 78 -------------------------------------------------------------------------------- 77 (319)
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHH
Q 039029 78 ---------------------------------------PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY 118 (319)
Q Consensus 78 ---------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (319)
.+...+..+...+...|++++|...++++.+..+. ...+
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHH
Confidence 01122223333334444444444444444433222 4444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC
Q 039029 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN 198 (319)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (319)
..+...+...|++++|...++++.... +.+...+..+..++...|++++|...++++.+.... +...+..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHc
Confidence 444455555555555555555544432 334455556666666666666676666666655332 455666677777777
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh---c
Q 039029 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---N 275 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~ 275 (319)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |+.....-....+..+...+.. .
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhc
Confidence 77777777777776543 3345667777778888888888888888776642 2211000112488999999999 9
Q ss_pred CchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 276 QEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 276 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
|++++|...++++.... +.+...+..+...+.+.|++++|..
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999863 4467788899999999999999863
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-21 Score=164.43 Aligned_cols=294 Identities=10% Similarity=0.001 Sum_probs=245.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++++.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999865 689999999999999999999999999999875 4467889999999
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCC--------------------------------------------------------
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVP-------------------------------------------------------- 113 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------- 113 (319)
+...|++++|...|+++...+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987764311
Q ss_pred ----------------------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cC-C-------CccHHHHHH
Q 039029 114 ----------------------DSITYNILINGYCR---CGNAKKAFSLHDEMIH-----KG-I-------QPTMLTYTS 155 (319)
Q Consensus 114 ----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~-~-------~~~~~~~~~ 155 (319)
+...+......+.. .|++++|...++++.. .. . +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12333333333443 8999999999999988 31 0 234567888
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK 235 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (319)
+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999887544 8888899999999999999999999998764 4467788999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
+++|...++++.+.. |+. ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 320 ~~~A~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD--PEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp TTHHHHHHHHHHHTC--SSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhC--hhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999998853 332 2688899999999999999999999998862 4467788899999999999998
Q ss_pred hcC
Q 039029 316 SSN 318 (319)
Q Consensus 316 A~~ 318 (319)
|..
T Consensus 391 A~~ 393 (514)
T 2gw1_A 391 ALK 393 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=5e-21 Score=151.66 Aligned_cols=272 Identities=9% Similarity=-0.033 Sum_probs=228.9
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH
Q 039029 41 LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120 (319)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
.+.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34566778889999999999999999999999875 346677778889999999999999999999987544 7888999
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 121 LINGYCRCG-NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 121 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
+...+...| ++++|...++++.... +.+...+..+..++...|++++|...++++.+.... +...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999998874 456788999999999999999999999999887543 4566777999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC-cccCcchhhHHHHHHHHHhcCch
Q 039029 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH-ISFNPTRLTYNALIQGLCKNQEG 278 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 278 (319)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+....... ...+....++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998864 456788999999999999999999999999875321111 11123347899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 279 DLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 279 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
++|...+++..+.. +.+...+..+...+.+.|++++|..
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999863 4467889999999999999999863
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3e-20 Score=148.87 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=236.4
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYNL 85 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 85 (319)
.+..++..+...+...|++++|+..++++.+... .+...+..+..++...|++++|...++++.+.... .+...+..
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 3467788899999999999999999999988643 36788999999999999999999999999987420 24444444
Q ss_pred H------------HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHH
Q 039029 86 L------------IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153 (319)
Q Consensus 86 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
+ ...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.... +.+..++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4 57888999999999999999887544 78899999999999999999999999999874 5678899
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHH------------HHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh-
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFN------------ALIDGHCTNGNIERAFSLLKEMDRMKVHPDE- 220 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 220 (319)
..+...+...|++++|...+++..+.... +...+. .+...+...|++++|...++++.+... .+.
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 269 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAE 269 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchH
Confidence 99999999999999999999999876433 333332 236678899999999999999987642 222
Q ss_pred ---hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-
Q 039029 221 ---VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD- 296 (319)
Q Consensus 221 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 296 (319)
..+..+...+...|++++|...++++.+.. |+ +..++..+...+...|++++|.+.++++.+. .|+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 234557789999999999999999999863 33 3378999999999999999999999999985 454
Q ss_pred hHHHHHHHHHhhhcch
Q 039029 297 DNTYFSLIEGIASVDK 312 (319)
Q Consensus 297 ~~~~~~l~~~~~~~g~ 312 (319)
...+..+..+....++
T Consensus 340 ~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 340 QQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5566666666555443
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=9.7e-22 Score=158.28 Aligned_cols=286 Identities=12% Similarity=0.006 Sum_probs=225.8
Q ss_pred HhccCChHHHHH-HHHHHHhCCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 20 MCKEGRLEEASR-MLEQMKENGL---VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 20 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
+.-.|++++|++ .|++...... ..+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888888 7776554322 1135678889999999999999999999999875 4477889999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH---------------HHHHH
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS---------------LIFVL 160 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 160 (319)
+++|...++++.+..+. +..++..+...+...|++++|...++++.... +.+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999987644 78899999999999999999999999999864 222222221 13334
Q ss_pred hhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48999999999999998874332 57889999999999999999999999998764 44577899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCC----------CChHHHHHHHHHhhh
Q 039029 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGIT----------PDDNTYFSLIEGIAS 309 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~ 309 (319)
...++++.+.. |+ +..++..+...|.+.|++++|...++++....-. ....+|..+..++..
T Consensus 271 ~~~~~~al~~~--~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 271 VAAYRRALELQ--PG------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHHHHHHHHC--TT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99999998853 33 2378899999999999999999999999875211 126789999999999
Q ss_pred cchhhhhc
Q 039029 310 VDKAAESS 317 (319)
Q Consensus 310 ~g~~~~A~ 317 (319)
.|++++|.
T Consensus 343 ~g~~~~A~ 350 (368)
T 1fch_A 343 LGQSDAYG 350 (368)
T ss_dssp HTCGGGHH
T ss_pred hCChHhHH
Confidence 99999885
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=1.8e-21 Score=156.62 Aligned_cols=274 Identities=13% Similarity=-0.056 Sum_probs=220.7
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+.+.|++++|+..|+++.+... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 455688899999999999999999999998653 478899999999999999999999999999875 346889999999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--cHHHHHHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVP---------DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP--TMLTYTSLI 157 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 157 (319)
++...|++++|...++++.+..+.. ....+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 9999999999999999998753210 12233445788999999999999999999874 33 688999999
Q ss_pred HHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 039029 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (319)
..+...|++++|...++++.+.... +..++..+..+|...|++++|...++++.+.. +.+..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999887533 68899999999999999999999999998864 345788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCc----ccCcchhhHHHHHHHHHhcCchhHHHHHHHH
Q 039029 238 EARRLLDQMKRRGIKPDHI----SFNPTRLTYNALIQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 287 (319)
+|...|+++.+........ ....+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998753221110 0011347899999999999999988887665
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=6.2e-21 Score=153.58 Aligned_cols=275 Identities=11% Similarity=-0.033 Sum_probs=227.3
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+.+.|++++|+..|+++.+... .+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356688899999999999999999999998753 477889999999999999999999999999875 447888999999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCCc--cHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNI---------------LINGYCRCGNAKKAFSLHDEMIHKGIQP--TML 151 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 151 (319)
++...|++++|...++++.+..+. +...+.. .+..+...|++++|...++++.... +. +..
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 218 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPD 218 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHH
Confidence 999999999999999999987543 3333321 2344448999999999999999874 33 578
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
++..+..++...|++++|...++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 999999999999999999999999988743 367889999999999999999999999998764 446778999999999
Q ss_pred cCCcHHHHHHHHHHHHHcCCCC---CCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 232 RQGKVEEARRLLDQMKRRGIKP---DHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
..|++++|...|+++.+..... .....+....+|..+..+|...|++++|..++++.+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999998753211 000011124789999999999999999999877543
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=2.7e-21 Score=155.59 Aligned_cols=262 Identities=12% Similarity=-0.013 Sum_probs=215.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+..+...+.+.|++++|+..|+++++.. +.+..++..+..++...|++++|...|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44568889999999999999999999999875 447889999999999999999999999999987543 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHH----------HHHHHHHHHhhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTML----------TYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMFNALI 192 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 192 (319)
+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998863 22222 2334578899999999999999999987433 2678899999
Q ss_pred HHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHH
Q 039029 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGL 272 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (319)
..|...|++++|...++++.+.. +.+..+|..+...|...|++++|...|+++.+.. |+. ..++..+..+|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~------~~~~~~l~~~~ 291 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGF------IRSRYNLGISC 291 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC------HHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc------hHHHHHHHHHH
Confidence 99999999999999999998864 4567899999999999999999999999999863 332 37899999999
Q ss_pred HhcCchhHHHHHHHHHHhCCC---C--------CChHHHHHHHHHhhhcchhhhhc
Q 039029 273 CKNQEGDLAEELLREMVSKGI---T--------PDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.+.|++++|...++++.+..- . .+...|..+..++...|+.+.|.
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999987520 0 13678889999999999888764
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.5e-20 Score=158.89 Aligned_cols=301 Identities=12% Similarity=0.035 Sum_probs=219.5
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------------
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ------------- 74 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------- 74 (319)
.++.+|..+..++.+.|++++|++.|+++.+.++ .+..++..+..++...|++++|...|+.+...
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 135 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 3566777788888888888888888888877643 36677778888888888888887766422100
Q ss_pred --------------------------------------------------------------------------------
Q 039029 75 -------------------------------------------------------------------------------- 74 (319)
Q Consensus 75 -------------------------------------------------------------------------------- 74 (319)
T Consensus 136 ~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 215 (537)
T 3fp2_A 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215 (537)
T ss_dssp HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHH
Confidence
Q ss_pred --------------CCCcC--------hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChH
Q 039029 75 --------------GIMPT--------ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK 132 (319)
Q Consensus 75 --------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (319)
...|+ ..++..+...+...|++++|...+++..+.. |+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 00111 1124444455666777777877777777653 34667777778888888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 133 KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
+|...++++.... +.+..++..+..++...|++++|...++++.+.... +...+..+...+...|++++|...++++.
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888887764 456778888888888888888888888888776433 45678888888888899999999888887
Q ss_pred hCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc----------CchhHHH
Q 039029 213 RMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN----------QEGDLAE 282 (319)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~ 282 (319)
+.. +.+...+..+...+...|++++|...|+++.+.. |+..........+......+... |++++|.
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 764 3456678888888899999999999998887753 22211112223345556777777 9999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 283 ELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
..++++.+.. +.+...+..+...+.+.|++++|.
T Consensus 449 ~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 449 KLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 9999999863 446788899999999999999986
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=6.8e-21 Score=150.70 Aligned_cols=276 Identities=11% Similarity=-0.047 Sum_probs=226.3
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|+.+|+++.+... .+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 456677889999999999999999999988643 377889999999999999999999999999875 347788899999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCccHHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNIL--------------IN-GYCRCGNAKKAFSLHDEMIHKGIQPTMLTY 153 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
++...|++++|.+.++++.+..+. +...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999999886443 33334333 22 3778899999999999999875 5578899
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988743 367889999999999999999999999988764 44677889999999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCccc----CcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISF----NPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
|++++|.+.++++.+.......... ..+...|..+..++.+.|++++|..++++..+
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999886432111000 00347889999999999999999998876543
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=3.7e-20 Score=146.47 Aligned_cols=261 Identities=12% Similarity=-0.040 Sum_probs=217.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+......+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 44567788889999999999999999999875 347788889999999999999999999999887543 7888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHH--------------HH-HHhhhccHHHHHHHHHHHhhCCCCccHHHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSL--------------IF-VLSKQNRMIEADQLFENFLAKGMLPDIVMF 188 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (319)
.+...|++++|...++++.... +.+...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 9999999999999999998863 2233333333 33 478899999999999999887543 68889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHH
Q 039029 189 NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (319)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |+ +..++..+
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~------~~~~~~~l 246 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PG------YVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------CHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC------CHHHHHHH
Confidence 999999999999999999999998764 4467789999999999999999999999998853 33 23688999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCC-----------ChHHHHHHHHHhhhcchhhhhc
Q 039029 269 IQGLCKNQEGDLAEELLREMVSKGITP-----------DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
...+...|++++|.+.++++....... +...+..+..++.+.|++++|.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999998753111 3678888999999999999885
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1e-19 Score=153.86 Aligned_cols=293 Identities=12% Similarity=0.038 Sum_probs=231.7
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
...|..+...+.+.|++++|+..|+++....+ .++.++..+..++...|++++|++.++++.+.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35577888999999999999999999998753 478899999999999999999999999999875 3477889999999
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCC-------------------------------------ChH----------------
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVP-------------------------------------DSI---------------- 116 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------~~~---------------- 116 (319)
+...|++++|...|+.+... +.+ +..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN-GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999644211 110 000
Q ss_pred --------------HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHhhhccHH
Q 039029 117 --------------TYNILINGYC--------RCGNAKKAFSLHDEMIHKGIQPTM-------LTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 117 --------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 167 (319)
....+...+. ..|++++|..+++++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247888999999888764 2232 34666677888899999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
+|...++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998874 457888889999999999999999999998764 4467789999999999999999999999998
Q ss_pred HcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
+.. |+. ...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 338 ~~~--~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 338 SLN--PEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHC--TTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 854 332 2688899999999999999999999999863 4467788889999999999998863
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=9.6e-20 Score=141.28 Aligned_cols=275 Identities=12% Similarity=0.075 Sum_probs=216.5
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
|+.....|++..|+..++................+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 455667899999999998765543222234556778999999999999986654 2 356778888899999999999
Q ss_pred hHHHHHHHHHhhCCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIVP-DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776434 566777788999999999999999987 46788999999999999999999999999
Q ss_pred HhhCCCCccHH---HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Q 039029 176 FLAKGMLPDIV---MFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIK 252 (319)
Q Consensus 176 ~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 252 (319)
+.+.. |+.. ....++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...|+++++..
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-- 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-- 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 98874 3322 11233455556799999999999998873 5678889999999999999999999999999853
Q ss_pred CCCcccCcchhhHHHHHHHHHhcCchhH-HHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhhc
Q 039029 253 PDHISFNPTRLTYNALIQGLCKNQEGDL-AEELLREMVSKGITPDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
|+. ..++..++..+...|+.++ +.++++++.+. .|+.... .....+.+.+++|.
T Consensus 231 p~~------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 231 SGH------PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLV 285 (291)
T ss_dssp TTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHH
T ss_pred CCC------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHH
Confidence 443 3788999999999999976 67899999875 5665432 33455566666553
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.2e-17 Score=129.47 Aligned_cols=247 Identities=13% Similarity=0.076 Sum_probs=197.4
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-ChhhHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP-TASTYNLLIHEL 90 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 90 (319)
....+.+++...|+++.|+..++. .-+|+..++..+...+...++.++|++.++++...+..| +...+..+...+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~ 111 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY 111 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 445578899999999999986644 245677888999999999999999999999999876434 566677778899
Q ss_pred HHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH-H--HHHHHHHHhhhccHH
Q 039029 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML-T--YTSLIFVLSKQNRMI 167 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~ 167 (319)
...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+.. |+.. . ...++..+...|+++
T Consensus 112 ~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp HHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred HHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHH
Confidence 999999999999987 3578899999999999999999999999999874 3322 1 122334445669999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH-HHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE-ARRLLDQM 246 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~ 246 (319)
+|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +-+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999874 4578999999999999999999999999998864 4467789999999999999876 67899999
Q ss_pred HHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHH
Q 039029 247 KRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (319)
.+. .|+. ..+.....+.+.++++..-
T Consensus 262 ~~~--~P~~----------~~~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 262 KDA--HRSH----------PFIKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHH--CTTC----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCC----------hHHHHHHHHHHHHHHHHHH
Confidence 885 4554 2334445555566655543
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=5e-18 Score=126.04 Aligned_cols=199 Identities=14% Similarity=0.016 Sum_probs=115.5
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHH
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLL 86 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (319)
+++...+..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|+..+++.++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 56677777777777778888888888877776543 366677777777777888888888777777764 2355666677
Q ss_pred HHHHHHc-----------CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 039029 87 IHELLME-----------RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155 (319)
Q Consensus 87 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
..++... |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777666 6666666666665554332 45555555556666666666666666655554 45555555
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
+..++...|++++|...|+++.+..+. +...+..+...+...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555566666666655555554322 3445555555555555555555555543
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-17 Score=126.75 Aligned_cols=225 Identities=14% Similarity=0.038 Sum_probs=162.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC--CC----hHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PD----SITYN 119 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 119 (319)
..+..+...+...|++++|+..++++.+.. .+...+..+..++...|++++|...+++..+..+. ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 455666666666677777777776666655 45666666666677777777777776666553211 11 46677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
.+...+...|++++|...+++..... |+. ..+...|++++|...++.+..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 77778888888888888888877753 332 345667788888888888777632 24567778888888888
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchh
Q 039029 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (319)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. |+ +...|..+...+...|+++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~------~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN------FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------CHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HH------HHHHHHHHHHHHHHHhhHH
Confidence 8999988888887754 3457778888888888999999999998888753 33 2367888888899999999
Q ss_pred HHHHHHHHHHhC
Q 039029 280 LAEELLREMVSK 291 (319)
Q Consensus 280 ~A~~~~~~~~~~ 291 (319)
+|...+++..+.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988888764
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=1.3e-19 Score=144.03 Aligned_cols=266 Identities=12% Similarity=0.075 Sum_probs=128.9
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
+++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+++++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 44569999999999999999999999653 47778999999999999999999988877764 44577888999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999888774 267779999999999999999999999976 47999999999999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
+|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++..+
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999987 278999999999999999999966554422 233345578899999999999999999987
Q ss_pred HcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCC------ChHHHHHHHHHhhhcchhhhhc
Q 039029 248 RRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK-GITP------DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.. .+.. ...|+.+..+|.+- ++++..+.++...++ +++| +...|..+.-.|.+.|+++.|.
T Consensus 235 ~l--e~ah------~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 235 GL--ERAH------MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp TS--TTCC------HHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred CC--cHHH------HHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 54 3332 25777777777654 333333333332222 3444 4667888888888888888775
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=6.1e-18 Score=125.59 Aligned_cols=199 Identities=11% Similarity=-0.033 Sum_probs=121.4
Q ss_pred cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHH
Q 039029 78 PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI 157 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (319)
++...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555556666666666666666666666655433 55566666666666666666666666666653 34455666666
Q ss_pred HHHhhh-----------ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHH
Q 039029 158 FVLSKQ-----------NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTL 226 (319)
Q Consensus 158 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (319)
.++... |++++|...+++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 7777777777777765433 46667777777777777777777777777665 566677777
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 227 MHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
..++...|++++|...|+++.+. .|+. ...+..+...+...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKD------LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTC------HHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77777777777777777777764 2332 2566777777777777777777776543
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-17 Score=127.53 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=196.0
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cC----hhhH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PT----ASTY 83 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 83 (319)
...|..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|.+.++...+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888999999999999999999999877 68889999999999999999999999999875321 11 5788
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..+..++...|++++|...+++..+.. |+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 899999999999999999999998864 342 45667788999999999998864 44667888999999999
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999887543 68889999999999999999999999998864 445778999999999999999999999
Q ss_pred HHHHHc
Q 039029 244 DQMKRR 249 (319)
Q Consensus 244 ~~~~~~ 249 (319)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=158.40 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=114.7
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHh---CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKE---NGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+|+++|++|++.|++++|.++|+.|.+ .|+.||+.+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4789999999999999999999987764 4688899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCch-hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc------HHHHHHHHHHH
Q 039029 88 HELLMERKM-VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT------MLTYTSLIFVL 160 (319)
Q Consensus 88 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 160 (319)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...+...|
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHHH
Confidence 999888874 67888999999999999999998887665543 344444444 2233333 34455555666
Q ss_pred hhhc
Q 039029 161 SKQN 164 (319)
Q Consensus 161 ~~~~ 164 (319)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=154.21 Aligned_cols=122 Identities=13% Similarity=0.120 Sum_probs=111.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVK---QGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
..+|+++|.+|++.|+.++|.++|++|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34799999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 122 INGYCRCGNA-KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 122 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.+-+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 9999999985 78999999999999999999999998766554433
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=6.1e-17 Score=124.63 Aligned_cols=238 Identities=9% Similarity=0.003 Sum_probs=192.2
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--hhhHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT--ASTYNLL 86 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (319)
|...+......+...|++++|+..|+++.+.... +..++..+..++...|++++|+..+++..+....++ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3456667888999999999999999999987533 566899999999999999999999999998432222 2348889
Q ss_pred HHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 87 IHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
..++...|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987554 77899999999999999999999999998773 55677788877344455699
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHcCCcH
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN---IERAFSLLKEMDRMK-VHPD------EVTYNTLMHGRCRQGKV 236 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~ 236 (319)
++|...++++.+.... +...+..+...+...|+ +++|...++++.+.. ..|+ ...+..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999887433 46777778888888887 778888888875532 1133 25778889999999999
Q ss_pred HHHHHHHHHHHHcC
Q 039029 237 EEARRLLDQMKRRG 250 (319)
Q Consensus 237 ~~a~~~~~~~~~~~ 250 (319)
++|.+.|+++.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999853
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=1.6e-16 Score=127.25 Aligned_cols=249 Identities=10% Similarity=0.021 Sum_probs=206.5
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN-LEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
...|..+...+.+.|++++|+..++++.+.+.. +..+|+.+..++...|+ +++|+..++++++... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 356788888999999999999999999987543 67889999999999997 9999999999999863 37889999999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh-hccHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK-QNRMI 167 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (319)
++...|++++|+..|+++.+..+. +...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999988665 88999999999999999999999999999986 5578899999999988 66657
Q ss_pred HH-----HHHHHHHhhCCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC------
Q 039029 168 EA-----DQLFENFLAKGMLPDIVMFNALIDGHCTNG--NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG------ 234 (319)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 234 (319)
+| +..+++.+..... +...|..+...+...| ++++|.+.+.++ +.. +.+...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5888888886543 6788988888898888 689999999888 432 445677888889988864
Q ss_pred ---cHHHHHHHHHHH-HHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 235 ---KVEEARRLLDQM-KRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 235 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
..++|.++++++ .+. .|... ..|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~------~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRK------EYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGH------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhH------HHHHHHHHHHH
Confidence 358999999998 553 44332 45666655543
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=8.8e-15 Score=122.21 Aligned_cols=279 Identities=15% Similarity=0.070 Sum_probs=140.9
Q ss_pred ccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcChhh
Q 039029 11 YTYGSFVSGMCK----EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN----KGNLEMAFSFRDEMVKQGIMPTAST 82 (319)
Q Consensus 11 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (319)
..+..|...|.. .+++++|++.|++..+.+ ++..+..+...|.. .+++++|+.+|++..+.+ +...
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 344445555554 555555555555555432 33444444444544 445555555555554443 2334
Q ss_pred HHHHHHHHHH----cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC--------
Q 039029 83 YNLLIHELLM----ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR----CGNAKKAFSLHDEMIHKGI-------- 146 (319)
Q Consensus 83 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~-------- 146 (319)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444443 444555555555544432 33444444444444 4444444444444443320
Q ss_pred -------------------------CccHHHHHHHHHHHhh----hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc
Q 039029 147 -------------------------QPTMLTYTSLIFVLSK----QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 147 -------------------------~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
..+...+..+...+.. .++.++|...|++..+.+ +...+..+...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 0122333344444444 455555555555554432 23344444444444
Q ss_pred C-----CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC---cHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHH
Q 039029 198 N-----GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG---KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALI 269 (319)
Q Consensus 198 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (319)
. +++++|...+++..+.+ +...+..+...|...| ++++|.++|++..+.+ +...+..+.
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----------~~~a~~~Lg 370 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----------EKAAQFNLG 370 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----------CHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----------CHHHHHHHH
Confidence 4 55666666666555543 3344455555555444 5666666666665542 124566666
Q ss_pred HHHHh----cCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhh----cchhhhhc
Q 039029 270 QGLCK----NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIAS----VDKAAESS 317 (319)
Q Consensus 270 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 317 (319)
..|.. .+++++|.+.|++..+.| +...+..+...|.+ .++.++|.
T Consensus 371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 371 NALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 66666 677777777777776654 45555666666655 56666553
No 35
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=2.7e-16 Score=125.99 Aligned_cols=248 Identities=11% Similarity=0.058 Sum_probs=205.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc-hhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK-MVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
..+|..+...+...|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|++..+..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4578888889999999999999999999885 3377889999999999997 99999999999998665 8899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc-CCcHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT-NGNIE 202 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 202 (319)
++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999985 568899999999999999999999999999998654 78889999999988 66657
Q ss_pred HH-----HHHHHHHHhCCCCCChhhHHHHHHHHHcCC--cHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc
Q 039029 203 RA-----FSLLKEMDRMKVHPDEVTYNTLMHGRCRQG--KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN 275 (319)
Q Consensus 203 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (319)
+| ...+++..+.. +-+...|..+...+...| ++++|.+.+.++ + ..|+. ...+..+...|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~------~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSS------PYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCC------HHHHHHHHHHHHHH
Confidence 77 58888887764 345678888888898888 689999999887 3 34443 36788899999887
Q ss_pred C--------c-hhHHHHHHHHH-HhCCCCCCh-HHHHHHHHHhh
Q 039029 276 Q--------E-GDLAEELLREM-VSKGITPDD-NTYFSLIEGIA 308 (319)
Q Consensus 276 g--------~-~~~A~~~~~~~-~~~~~~~~~-~~~~~l~~~~~ 308 (319)
| + .++|+++++++ .+. .|.. ..|..+...+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 4 3 58999999998 653 5654 44555555543
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.1e-16 Score=121.58 Aligned_cols=252 Identities=12% Similarity=0.011 Sum_probs=197.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCC--ChHHHHHHH
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVP--DSITYNILI 122 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 122 (319)
...+......+...|++++|+..++++.+... .+...+..+..++...|++++|...+++..+....+ ....|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34566778889999999999999999998753 356688899999999999999999999998843222 234588999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
..+...|++++|...+++..+.. +.+..++..+..++...|++++|...+++..+... .+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 45678999999999999999999999999988743 35777777773444456999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc---HHHHHHHHHHHHHcCC-CCCCcccCcchhhHHHHHHHHHhcCch
Q 039029 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGK---VEEARRLLDQMKRRGI-KPDHISFNPTRLTYNALIQGLCKNQEG 278 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (319)
+|...++++.+.. +.+...+..+...+...|+ +++|...++++.+... .|+.. ......+|..+...|...|++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998864 3346777778888888888 8889999998877521 11110 000125788899999999999
Q ss_pred hHHHHHHHHHHhCCCCCChH-HHHHH
Q 039029 279 DLAEELLREMVSKGITPDDN-TYFSL 303 (319)
Q Consensus 279 ~~A~~~~~~~~~~~~~~~~~-~~~~l 303 (319)
++|.+.++++.+. .|+.. .+..+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 238 VKADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccHHHHHHHh
Confidence 9999999999986 45544 44333
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2.1e-15 Score=116.14 Aligned_cols=224 Identities=13% Similarity=-0.001 Sum_probs=198.1
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcChhhHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN----KGNLEMAFSFRDEMVKQGIMPTASTYN 84 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (319)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4567788889999999999999999999984 356788889999999 999999999999999875 678888
Q ss_pred HHHHHHHH----cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHHHHHHH
Q 039029 85 LLIHELLM----ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR----CGNAKKAFSLHDEMIHKGIQPTMLTYTSL 156 (319)
Q Consensus 85 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (319)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999874 77889999999999 999999999999999875 56677888
Q ss_pred HHHHhh----hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 157 IFVLSK----QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT----NGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 157 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999998874 46778888889998 999999999999998864 3667888889
Q ss_pred HHHc----CCcHHHHHHHHHHHHHcC
Q 039029 229 GRCR----QGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 229 ~~~~----~g~~~~a~~~~~~~~~~~ 250 (319)
.|.. .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 999999999999998875
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.3e-14 Score=121.13 Aligned_cols=270 Identities=12% Similarity=0.037 Sum_probs=203.7
Q ss_pred CcccHHHHHHHHhc----cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCh
Q 039029 9 DSYTYGSFVSGMCK----EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCN----KGNLEMAFSFRDEMVKQGIMPTA 80 (319)
Q Consensus 9 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
++..+..+...|.. .+++++|+..|++..+.| ++..+..+...|.. .+++++|.++|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56777788888888 899999999999998864 67788889999998 899999999999999875 56
Q ss_pred hhHHHHHHHHHH----cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHHH
Q 039029 81 STYNLLIHELLM----ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR----CGNAKKAFSLHDEMIHKGIQPTMLT 152 (319)
Q Consensus 81 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (319)
..+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777788888888 789999999999998875 67788888888887 789999999999998875 6677
Q ss_pred HHHHHHHHhh----hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHhCCCCCChhhHH
Q 039029 153 YTSLIFVLSK----QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT----NGNIERAFSLLKEMDRMKVHPDEVTYN 224 (319)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888877 789999999999888764 45566666666665 677888888888776643 345556
Q ss_pred HHHHHHHc----CCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc-----CchhHHHHHHHHHHhCCCCC
Q 039029 225 TLMHGRCR----QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN-----QEGDLAEELLREMVSKGITP 295 (319)
Q Consensus 225 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~ 295 (319)
.+...|.. .+++++|..+|++..+.+. ...+..+...|... +++++|...+++..+.|
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~----------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--- 326 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQGN----------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--- 326 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---
Confidence 66666666 6777777777777765431 13445555555555 56666666666665543
Q ss_pred ChHHHHHHHHHhhh
Q 039029 296 DDNTYFSLIEGIAS 309 (319)
Q Consensus 296 ~~~~~~~l~~~~~~ 309 (319)
+...+..+...+..
T Consensus 327 ~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 327 DATAQANLGAIYFR 340 (490)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 23344444444443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2.7e-15 Score=115.49 Aligned_cols=224 Identities=13% Similarity=-0.026 Sum_probs=197.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH----cCchhHHHHHHHHHhhCCCCCChHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM----ERKMVEADDMLKEMGEKGIVPDSITYN 119 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (319)
++.++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778889999999999999999999999843 55778888899999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh----hccHHHHHHHHHHHhhCCCCccHHHHHHH
Q 039029 120 ILINGYCR----CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK----QNRMIEADQLFENFLAKGMLPDIVMFNAL 191 (319)
Q Consensus 120 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (319)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67888899999998 999999999999999875 56677788
Q ss_pred HHHHhc----CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 192 IDGHCT----NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR----QGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 192 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+. ..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------~~ 219 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----------GG 219 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------HH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----------HH
Confidence 888887 899999999999998864 56778889999999 9999999999999998642 25
Q ss_pred hHHHHHHHHHh----cCchhHHHHHHHHHHhCC
Q 039029 264 TYNALIQGLCK----NQEGDLAEELLREMVSKG 292 (319)
Q Consensus 264 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 292 (319)
.+..+...|.. .+++++|.+.+++..+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77888999998 999999999999999875
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=1.6e-17 Score=128.02 Aligned_cols=223 Identities=12% Similarity=-0.043 Sum_probs=132.7
Q ss_pred HhccCChHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 20 MCKEGRLEEASRMLEQMKENGL---VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+...|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3455677777777777776532 1234566777777777777777777777777664 23566677777777777777
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENF 176 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
++|...+++..+..+. +...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777777665433 56667777777777777777777777776653 22223333333445556666666666555
Q ss_pred hhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 177 LAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP---DEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
..... ++...+. ++..+...++.++|...+.+..+..... +...+..+...|...|++++|...|+++.+
T Consensus 171 ~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 171 FEKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54422 2222222 4444555555666666666554432100 134455555555666666666666666554
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=5.1e-17 Score=125.20 Aligned_cols=224 Identities=10% Similarity=-0.078 Sum_probs=108.0
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
..++..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|.+.++++++.. +.+...+..+..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 34455555555555666666666655555422 244555555555555666666666665555543 2234555555555
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...|++++|...++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHH
Confidence 555666666666665555442 222222233333344455566665555554442 2222222 244444455555555
Q ss_pred HHHHHHHhhCCCCc---cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 170 DQLFENFLAKGMLP---DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 170 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
...+.......... +..++..+...|...|++++|...++++.+.. |+. +.....++...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 55555554432110 13445555555555566666666665555432 221 122233444445555554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=8.6e-16 Score=116.80 Aligned_cols=210 Identities=14% Similarity=-0.002 Sum_probs=160.3
Q ss_pred hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 80 ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456677777788888888888888888776433 67778888888888888888888888887764 4467778888888
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732233 46677778888888889999998888887754 3356778888888888999999
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHH
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFS 302 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 302 (319)
|..+++++.+.. |+ +...+..+...+...|++++|.+.++++.+. .|+...+..
T Consensus 194 A~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG--GQ------NARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS--CC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHHhC--cC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence 999998887642 32 2356778888888889999999999888875 455444433
No 43
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6e-19 Score=140.30 Aligned_cols=245 Identities=13% Similarity=0.070 Sum_probs=105.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5688999999999883 2348999999999999999999999653 477799999999999999999999
Q ss_pred HHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCC
Q 039029 102 MLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181 (319)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 3467888999999999999999988884 367789999999999999999999999976
Q ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a-------- 207 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA-------- 207 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--------
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--------
Confidence 36899999999999999999999988 268899999999999999999965544321 222
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhh--hcchhhh
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA--SVDKAAE 315 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 315 (319)
.-...++..|.+.|.+++|..+++..+... +-....|..+..+++ +-|+..+
T Consensus 208 -d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~e 261 (449)
T 1b89_A 208 -DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 261 (449)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334568899999999999999999988653 334555666655554 3444443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.3e-16 Score=120.64 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
....|..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 345566677777778888888888887776532 356677777777788888888888888777664 235667777777
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 777788888888888777765433 66677777777777888888888887777663 4456677777777777777777
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
|...++++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777766533 24666777777777777777777777777664
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=1.2e-15 Score=115.95 Aligned_cols=200 Identities=14% Similarity=0.000 Sum_probs=103.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
..+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 344555555555555555555555555442 223445555555555555555555555555544322 444555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHH
Q 039029 126 CRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
...|++++|.+.++++...+. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555544111 223344555555555555555555555555544321 344555555555555555555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55555555432 233444555555555555666665555555543
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=2.1e-17 Score=134.60 Aligned_cols=307 Identities=13% Similarity=0.032 Sum_probs=229.3
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT----AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GIM- 77 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 77 (319)
.+....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344556677888999999999999999999886432 3 357888999999999999999999987653 211
Q ss_pred cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCC-----CCChHHHHHHHHHHHhcCC--------------------hH
Q 039029 78 PTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-----VPDSITYNILINGYCRCGN--------------------AK 132 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 132 (319)
....++..+...+...|++++|...+++..+... .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2355778888999999999999999998765311 1124578888999999999 99
Q ss_pred HHHHHHHHHHHc----CC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC----CCc-cHHHHHHHHHHHhcCCcHH
Q 039029 133 KAFSLHDEMIHK----GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG----MLP-DIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 133 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~ 202 (319)
+|...+++.... +. +....++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887653 11 1223578888899999999999999999887541 111 1347888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc
Q 039029 203 RAFSLLKEMDRMKVH-PD----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (319)
+|...+++..+.... ++ ..++..+...|...|++++|...++++.+....... ......++..+...|...|+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCC
Confidence 999999987643111 11 457788899999999999999999998764211111 01113578889999999999
Q ss_pred hhHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhhcchhhhh
Q 039029 278 GDLAEELLREMVSK----GITP-DDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 278 ~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 316 (319)
+++|.+.+++..+. +..+ ...++..+...+...|+...+
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 99999999998764 2122 345677778888888877543
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=6.1e-15 Score=122.63 Aligned_cols=298 Identities=13% Similarity=0.003 Sum_probs=214.0
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC----
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKEN--------GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG---- 75 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 75 (319)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999987542 122345689999999999999999999999886531
Q ss_pred ---CCcChhhHHHHHHHHHHc--CchhHHHHHHHHHhhCCCCCChHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCC
Q 039029 76 ---IMPTASTYNLLIHELLME--RKMVEADDMLKEMGEKGIVPDSITYNILING---YCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 76 ---~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
......++..+..++... +++++|...|++..+..+. ++..+..+..+ +...++.++|++.+++..+.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 111345566655555554 5789999999999887544 56666655554 445678889999999988875 4
Q ss_pred ccHHHHHHHHHHHhh----hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhH
Q 039029 148 PTMLTYTSLIFVLSK----QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTY 223 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (319)
.+..++..+...+.. .+++++|.+.+++....... +..++..+...|...|++++|...++++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 566666666655543 56788999999998876543 67888999999999999999999999998764 3345666
Q ss_pred HHHHHHHHcC-------------------CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHH
Q 039029 224 NTLMHGRCRQ-------------------GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284 (319)
Q Consensus 224 ~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (319)
..+...|... +.+++|...++++.+.. |+. ..++..+...+...|++++|.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~------~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNL------FRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTT------CCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cch------hhhhhhHHHHHHHhccHHHHHHH
Confidence 6666655432 34677888888887753 332 25788999999999999999999
Q ss_pred HHHHHhCCCCCChH--HHHHHHH-Hhhhcchhhhhc
Q 039029 285 LREMVSKGITPDDN--TYFSLIE-GIASVDKAAESS 317 (319)
Q Consensus 285 ~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~ 317 (319)
|++.++....+... .+..+.. .....|++++|+
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999864333221 1222222 234677777775
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.5e-15 Score=113.18 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=126.0
Q ss_pred hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 80 ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555555556666666666666665554322 45556666666666666666666666666553 3355566666666
Q ss_pred Hhhh-ccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 039029 160 LSKQ-NRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 160 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (319)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666666521222 24556666667777777777777777766543 234556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHH
Q 039029 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 300 (319)
+|...++++.+.... + +...+..+...+...|+.+.|..+++.+... .|+....
T Consensus 165 ~A~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 165 DADYYFKKYQSRVEV-L------QADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHCS-C------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHhCCC-C------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 777777777664210 1 2245566666667777777777777776653 3444433
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.6e-15 Score=113.14 Aligned_cols=203 Identities=10% Similarity=-0.041 Sum_probs=140.0
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+...+..+...+...|++++|++.|+.+.+... .+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345567777777778888888888877776532 356677777777777888888888887777654 335666777777
Q ss_pred HHHHc-CchhHHHHHHHHHhhCCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 89 ELLME-RKMVEADDMLKEMGEKGIVP-DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 89 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
++... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777777622122 35666777777777777777777777777653 34566777777777777777
Q ss_pred HHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 167 IEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777766543135555666666667777777777777776543
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.8e-15 Score=123.89 Aligned_cols=299 Identities=13% Similarity=-0.016 Sum_probs=212.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhC-----C--CCCCHHhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCcCh
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKEN-----G--LVPTAVTYNTLIDGYCNK--GNLEMAFSFRDEMVKQGIMPTA 80 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 80 (319)
..+|+.+...|...|++++|+..+++..+. + ......++.....++... +++++|+..|++.++..+ -+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~ 172 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNP 172 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCH
Confidence 457889999999999999999999887642 1 112345666666565554 569999999999998752 245
Q ss_pred hhHHHHHHHH---HHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCccHHHH
Q 039029 81 STYNLLIHEL---LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR----CGNAKKAFSLHDEMIHKGIQPTMLTY 153 (319)
Q Consensus 81 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
..+..+..++ ...++.++|++.+++..+..+. +...+..+...+.. .|++++|.+.+++..... +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 5555555443 4457778899999998876543 66666666655544 467889999999998875 5678889
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-------------------CcHHHHHHHHHHHHhC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN-------------------GNIERAFSLLKEMDRM 214 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~ 214 (319)
..+...+...|++++|...++++.+..+. +..++..+..+|... +..+.|...+++..+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999887543 566676666655322 2356788888887765
Q ss_pred CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHH-HHHhcCchhHHHHHHHHHHhCC-
Q 039029 215 KVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ-GLCKNQEGDLAEELLREMVSKG- 292 (319)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~- 292 (319)
. +.+...+..+...+...|++++|...|+++++....+... ...+..+.. .....|++++|+..+++.++..
T Consensus 330 ~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~ 403 (472)
T 4g1t_A 330 N-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK-----QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ 403 (472)
T ss_dssp C-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC
T ss_pred C-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 4 4456788899999999999999999999998864332210 012333332 3457799999999988876532
Q ss_pred ----------------------CCCChHHHHHHHHHhhhcchhhhhcC
Q 039029 293 ----------------------ITPDDNTYFSLIEGIASVDKAAESSN 318 (319)
Q Consensus 293 ----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~ 318 (319)
-+.+..+|..+...+...|++++|+.
T Consensus 404 ~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 404 KSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 13356788889999999999999975
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=3.4e-16 Score=118.27 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 80 ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
...+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555566666666666666666654332 55666666666666667777766666666653 3355666666666
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (319)
+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 6667777777777766665532 245566666777777777777777777766543 33456666777777777777777
Q ss_pred HHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 240 RRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
...++++.+.. |+ +..++..+...|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~--~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD--PG------HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC--TT------CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776643 22 2256777777777777777777777777764
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-16 Score=130.03 Aligned_cols=277 Identities=13% Similarity=0.026 Sum_probs=210.9
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcChhh
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTA----VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----G-IMPTAST 82 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 82 (319)
.+..+...+...|++++|+..|+++.+.... +. .++..+...+...|++++|...+++..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3455677889999999999999999886433 33 47888999999999999999999988764 1 1234567
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCC-----CCCChHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKG-----IVPDSITYNILINGYCRCGN-----------------AKKAFSLHDE 140 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 140 (319)
+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8888899999999999999999876541 11235578888999999999 9999999888
Q ss_pred HHHc----CC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC-cc----HHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039029 141 MIHK----GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PD----IVMFNALIDGHCTNGNIERAFSLLKE 210 (319)
Q Consensus 141 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
..+. +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7653 11 122357888889999999999999999988764111 11 23778889999999999999999998
Q ss_pred HHhCCCC-----CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHH
Q 039029 211 MDRMKVH-----PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELL 285 (319)
Q Consensus 211 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 285 (319)
..+.... ....++..+...+...|++++|..++++..+....... ......++..+...|...|++++|.+.+
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7653211 11456788889999999999999999998764211100 0012257888999999999999999999
Q ss_pred HHHHhC
Q 039029 286 REMVSK 291 (319)
Q Consensus 286 ~~~~~~ 291 (319)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=3e-16 Score=124.27 Aligned_cols=278 Identities=14% Similarity=0.033 Sum_probs=209.5
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcChh
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT----AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GI-MPTAS 81 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 81 (319)
..+......+...|++++|+..|+++.+.... + ...+..+...+...|++++|.+.+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556677889999999999999999886432 3 367888999999999999999999887653 21 12356
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCC-CC----hHHHHHHHHHHHhcCC--------------------hHHHHH
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIV-PD----SITYNILINGYCRCGN--------------------AKKAFS 136 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 136 (319)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7788889999999999999999987653111 12 3477888899999999 999999
Q ss_pred HHHHHHHc----CC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC----CC-ccHHHHHHHHHHHhcCCcHHHHHH
Q 039029 137 LHDEMIHK----GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG----ML-PDIVMFNALIDGHCTNGNIERAFS 206 (319)
Q Consensus 137 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~ 206 (319)
.+++.... +. +....++..+...+...|++++|...+++..+.. .. ....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887543 11 1223577888889999999999999999877541 11 113477888899999999999999
Q ss_pred HHHHHHhCCCC-CC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHH
Q 039029 207 LLKEMDRMKVH-PD----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281 (319)
Q Consensus 207 ~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (319)
.+++..+.... .+ ..++..+...+...|++++|...++++.+....... ......++..+...|...|++++|
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHcCChHHH
Confidence 99987543111 11 456778889999999999999999998764211110 011235778899999999999999
Q ss_pred HHHHHHHHhC
Q 039029 282 EELLREMVSK 291 (319)
Q Consensus 282 ~~~~~~~~~~ 291 (319)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 54
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1e-13 Score=116.88 Aligned_cols=292 Identities=8% Similarity=0.080 Sum_probs=163.6
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
|...|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |+...|..++.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 45667777774 67788888888888888753 3467778888888888888888888888877653 35444433332
Q ss_pred ------------------------------------------HHHH---------cCchhHHHHHHHHHhhCCCCCChHH
Q 039029 89 ------------------------------------------ELLM---------ERKMVEADDMLKEMGEKGIVPDSIT 117 (319)
Q Consensus 89 ------------------------------------------~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (319)
.... .|+++.|..+|++..+.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 1111 3556666666666665211111122
Q ss_pred HHHHHHHH-------------HhcCChH----------------------------------------------------
Q 039029 118 YNILINGY-------------CRCGNAK---------------------------------------------------- 132 (319)
Q Consensus 118 ~~~l~~~~-------------~~~~~~~---------------------------------------------------- 132 (319)
|....... ...+++.
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 22111100 0001111
Q ss_pred --------HHHHHHHHHHHcCCCccHHHHHHHHHHHhh-------hccHH-------HHHHHHHHHhhCCCCccHHHHHH
Q 039029 133 --------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSK-------QNRMI-------EADQLFENFLAKGMLPDIVMFNA 190 (319)
Q Consensus 133 --------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 190 (319)
++..+|++..... +.+...|...+..+.+ .|+++ +|..++++..+.-.+.+...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 2233333333331 2344455555555543 56665 77788877775222335677777
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHH
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPD-E-VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (319)
++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+++.+. .|.. ...|...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~------~~~~~~~ 396 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTR------HHVYVTA 396 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCC------THHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCc------hHHHHHH
Confidence 777777888888888888887774 343 2 36777777777777777777777777653 2221 0122111
Q ss_pred HHH-HHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhhh
Q 039029 269 IQG-LCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 269 ~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 316 (319)
+.. +...|+.++|..+|++.++.. +-+...|..++..+.+.|+.++|
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhH
Confidence 111 223555566666665555431 22345555555555555555544
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=5.8e-16 Score=126.42 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=205.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCchhHHHHHHHHHhhC----C-CCCCh
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA----STYNLLIHELLMERKMVEADDMLKEMGEK----G-IVPDS 115 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 115 (319)
...+..+...+...|++++|+..|+++++.... +. ..+..+..++...|++++|...+++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556777889999999999999999987432 32 46888889999999999999999987653 1 12245
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCccHHHHHHHHHHHhhhcc-----------------HHHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHK----G-IQPTMLTYTSLIFVLSKQNR-----------------MIEADQLF 173 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 173 (319)
..+..+...|...|++++|...+++.... + .+....++..+...+...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888899999999999999999988764 1 12234578888899999999 99999998
Q ss_pred HHHhhC----CCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 174 ENFLAK----GMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PD----EVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 174 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 877553 1111 2457788889999999999999999988653211 11 237788899999999999999999
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-CChHHHHHHHHHhhhcchhhhhc
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----GIT-PDDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+++.+....... ......++..+...+...|++++|...+++.... +.. ....++..+...+.+.|++++|.
T Consensus 287 ~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 287 KRTLALAVELGE--REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 998764211110 0112367888999999999999999999998764 111 12447788888999999999985
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=6.3e-14 Score=109.76 Aligned_cols=236 Identities=10% Similarity=-0.024 Sum_probs=187.0
Q ss_pred ccHHHHHHHHhcc----CCh----HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCh-------HHHHHHH
Q 039029 11 YTYGSFVSGMCKE----GRL----EEASRMLEQMKENGLVPTAVTYNTLIDGYCN-------KGNL-------EMAFSFR 68 (319)
Q Consensus 11 ~~~~~li~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~ 68 (319)
..|...+..-.+. ++. ++|..+|+++.... +.++..|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4466666655443 233 68889999998864 3477888888887763 5886 8999999
Q ss_pred HHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039029 69 DEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSI-TYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
++.++.-.+-+...|..++..+...|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.. +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99998312336678999999999999999999999999986433 344 89999999999999999999999999864 3
Q ss_pred ccHHHHHHHHHHHh-hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CCC--ChhhH
Q 039029 148 PTMLTYTSLIFVLS-KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK-VHP--DEVTY 223 (319)
Q Consensus 148 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~ 223 (319)
.+...|........ ..|++++|..+|++..+..+. +...|..++..+.+.|++++|..+|++..... .+| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 44555554443322 369999999999999886433 68889999999999999999999999998863 344 35688
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 224 NTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
..++......|+.+.|..+++++.+..
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 888999999999999999999998853
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.8e-13 Score=107.20 Aligned_cols=220 Identities=7% Similarity=-0.007 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHH-------cCch-------hHHHHHHHHHhhC-CCCCChHHHHHHHHHHH
Q 039029 62 EMAFSFRDEMVKQGIMPTASTYNLLIHELLM-------ERKM-------VEADDMLKEMGEK-GIVPDSITYNILINGYC 126 (319)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 126 (319)
++|...|++++... +.+...|..++..+.. .|++ ++|..+|++..+. .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 68889999998864 4477788888777753 5776 8999999999983 43 36778999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-hcCCcHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTML-TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH-CTNGNIERA 204 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 204 (319)
+.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999853 22343 899999999999999999999999998753 3455555444332 237999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CCCCCcccCcchhhHHHHHHHHHhcCchhHHHH
Q 039029 205 FSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG-IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (319)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++++... +.|+. ....|..++....+.|+.+.|..
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-----~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-----SGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG-----CHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999987753 3467889999999999999999999999999863 34431 23678889999999999999999
Q ss_pred HHHHHHhC
Q 039029 284 LLREMVSK 291 (319)
Q Consensus 284 ~~~~~~~~ 291 (319)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.5e-15 Score=123.56 Aligned_cols=274 Identities=14% Similarity=0.076 Sum_probs=206.7
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCchhHHHHHHHHHhhC----CCC-
Q 039029 42 VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT----ASTYNLLIHELLMERKMVEADDMLKEMGEK----GIV- 112 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 112 (319)
......+......+...|++++|...|+++.+.... + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999999987422 3 357788889999999999999999987543 111
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----C-CccHHHHHHHHHHHhhhcc--------------------HH
Q 039029 113 PDSITYNILINGYCRCGNAKKAFSLHDEMIHKG----I-QPTMLTYTSLIFVLSKQNR--------------------MI 167 (319)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~--------------------~~ 167 (319)
....++..+...+...|++++|...+++..... . .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 135677888999999999999999999887641 1 1114478888899999999 99
Q ss_pred HHHHHHHHHhhC----CCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCcHH
Q 039029 168 EADQLFENFLAK----GMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV-HPD----EVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 168 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 237 (319)
+|...+.+.... +..| ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876543 1111 245678888999999999999999998765311 111 237788899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCC-ChHHHHHHHHHhhhcch
Q 039029 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----GITP-DDNTYFSLIEGIASVDK 312 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 312 (319)
+|...+++..+....... ......++..+...|...|++++|...+++.... +..+ ...++..+...+...|+
T Consensus 245 ~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcC--chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999998764211111 0111357888999999999999999999998764 1111 15577788889999999
Q ss_pred hhhhcC
Q 039029 313 AAESSN 318 (319)
Q Consensus 313 ~~~A~~ 318 (319)
+++|..
T Consensus 323 ~~~A~~ 328 (406)
T 3sf4_A 323 HDQAMH 328 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=3.7e-14 Score=102.35 Aligned_cols=166 Identities=13% Similarity=0.005 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIF 158 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (319)
+..+|..+...+...|++++|++.|++..+..+. +...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3344555555555555555555555555544332 44455555555555555555555555554442 233444444455
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
.+...++++.+...+.+....... +...+..+...+...|++++|...|++..+.. +.+..++..+..+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555555555544222 34455555555555566666665555555443 2344455555566666666666
Q ss_pred HHHHHHHHHH
Q 039029 239 ARRLLDQMKR 248 (319)
Q Consensus 239 a~~~~~~~~~ 248 (319)
|.+.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665554
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=3.8e-14 Score=102.29 Aligned_cols=165 Identities=19% Similarity=0.123 Sum_probs=84.6
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
+..|..+...+.+.|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555555555555555555555555544322 44455555555555555555555555555443 1233444444455
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+...++++.+...+.+..+..+. +...+..+..++.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555444322 44455555555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHhh
Q 039029 170 DQLFENFLA 178 (319)
Q Consensus 170 ~~~~~~~~~ 178 (319)
...|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=1.2e-14 Score=120.64 Aligned_cols=214 Identities=9% Similarity=-0.057 Sum_probs=180.0
Q ss_pred CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA-KKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
+.++++...+++...... .+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667777777665533 4788999999999999999 99999999999875 55688999999999999999999999
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHhcC---------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--------Cc
Q 039029 173 FENFLAKGMLPDIVMFNALIDGHCTN---------GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ--------GK 235 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 235 (319)
|+++.+.. |+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999875 5678889999999999 99999999999998864 44677899999999988 99
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 236 VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
+++|...|+++.+.. |.. ..+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++
T Consensus 237 ~~~A~~~~~~al~~~--p~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 237 SQQALSAYAQAEKVD--RKA---SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHC--GGG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCc---ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999853 310 0134789999999999999999999999999863 3356678888899999999998
Q ss_pred hcC
Q 039029 316 SSN 318 (319)
Q Consensus 316 A~~ 318 (319)
|+.
T Consensus 311 Ai~ 313 (474)
T 4abn_A 311 LLE 313 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=8.7e-13 Score=111.30 Aligned_cols=206 Identities=11% Similarity=0.067 Sum_probs=152.7
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccH
Q 039029 101 DMLKEMGEKGIVPDSITYNILINGYCR-------CGNAK-------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (319)
.+|++.....+ .+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+..++..+.+.|++
T Consensus 259 ~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 34444443322 255666666666665 68887 8999999998632355688999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCcHHHHHHHHH
Q 039029 167 IEADQLFENFLAKGMLPD-IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-RCRQGKVEEARRLLD 244 (319)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 244 (319)
++|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...+...+.. +...|++++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999999986332 3 3588889998899999999999999998753 2223333332222 336899999999999
Q ss_pred HHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCC--hHHHHHHHHHhhhcchhhhhc
Q 039029 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPD--DNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~ 317 (319)
+.++.. |+. ...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+......|+.+.+.
T Consensus 416 ~al~~~--p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 416 LGLKKY--GDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHH--TTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHC--CCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998853 332 3788999999999999999999999999863 2332 336777777777888877664
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=1.6e-14 Score=119.81 Aligned_cols=214 Identities=7% Similarity=-0.093 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHH
Q 039029 26 LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNL-EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLK 104 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 104 (319)
+++++..++...... +.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666777665543 34778888999999999999 99999999998875 3367889999999999999999999999
Q ss_pred HHhhCCCCCChHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh--------ccHH
Q 039029 105 EMGEKGIVPDSITYNILINGYCRC---------GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--------NRMI 167 (319)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 167 (319)
+..+.. |+...+..+...+... |++++|+..+++..+.. +.+...+..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998874 5578888899999998 99999999999998875 55688899999999888 9999
Q ss_pred HHHHHHHHHhhCCCC--ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 168 EADQLFENFLAKGML--PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
+|...|++..+.... .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 367889999999999999999999999988764 33566788888888888888888876544
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=2.5e-15 Score=118.94 Aligned_cols=269 Identities=14% Similarity=0.084 Sum_probs=201.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCchhHHHHHHHHHhhC----CC-CCChH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT----ASTYNLLIHELLMERKMVEADDMLKEMGEK----GI-VPDSI 116 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 116 (319)
..+......+...|++++|...++++.+.... + ...+..+...+...|++++|.+.+++..+. +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556677888999999999999999987422 3 367788889999999999999999887543 11 12356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-Ccc----HHHHHHHHHHHhhhcc--------------------HHHHHH
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPT----MLTYTSLIFVLSKQNR--------------------MIEADQ 171 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 171 (319)
.+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999998776410 111 3478888889999999 999999
Q ss_pred HHHHHhhC----CCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCcHHHHHH
Q 039029 172 LFENFLAK----GMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVH-PD----EVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 172 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
.+++.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 98876543 1111 2456788888999999999999999987553111 11 2367888899999999999999
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-CChHHHHHHHHHhhhcchhhhh
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK----GIT-PDDNTYFSLIEGIASVDKAAES 316 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A 316 (319)
.+++..+....... ......++..+...+...|++++|...+++.... +-. ....++..+...+.+.|++++|
T Consensus 245 ~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 245 YYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99998764211111 0111357788899999999999999999998764 111 1244677888899999999988
Q ss_pred c
Q 039029 317 S 317 (319)
Q Consensus 317 ~ 317 (319)
.
T Consensus 323 ~ 323 (338)
T 3ro2_A 323 M 323 (338)
T ss_dssp H
T ss_pred H
Confidence 5
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=119.35 Aligned_cols=240 Identities=18% Similarity=0.066 Sum_probs=171.7
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKEN-------GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ------G 75 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 75 (319)
+..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566888999999999999999999998873 23335667888999999999999999999998764 2
Q ss_pred -CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC------C-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 039029 76 -IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK------G-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--- 144 (319)
Q Consensus 76 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 144 (319)
.+....++..+...+...|++++|...+++..+. + .+.....+..+...+...|++++|..+++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2334567888899999999999999999988764 1 1224567888899999999999999999998775
Q ss_pred ---C-CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC-------CCcc-------HHHHHHHHHHHhcCCcHHHHHH
Q 039029 145 ---G-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG-------MLPD-------IVMFNALIDGHCTNGNIERAFS 206 (319)
Q Consensus 145 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~~a~~ 206 (319)
+ .+....++..+..++...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 12234678888999999999999999999887631 1111 1122222333334445555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.+....... +....++..+...|...|++++|.++|+++.+.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666554432 334567888999999999999999999998764
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=3e-14 Score=115.18 Aligned_cols=292 Identities=10% Similarity=-0.020 Sum_probs=200.9
Q ss_pred HhccCChHHHHHHHHHHHhC--CCCCC--HHhHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCcC---
Q 039029 20 MCKEGRLEEASRMLEQMKEN--GLVPT--AVTYNTLIDG--YCNKGNLEMAF-----------SFRDEMVKQGIMPT--- 79 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~--- 79 (319)
+.+.+++++|..+++++.+. .+..+ ...|-.++.. ....++.+.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 46789999999999998764 22223 3333333332 11223333333 55555544311111
Q ss_pred -hhhHHHHHHHHHHcCchhHHHHHHHHHhhC----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC----C
Q 039029 80 -ASTYNLLIHELLMERKMVEADDMLKEMGEK----GIVP-DSITYNILINGYCRCGNAKKAFSLHDEMIHK--GI----Q 147 (319)
Q Consensus 80 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~ 147 (319)
...+......+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. .. +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223556778899999999999998764 1111 3467888999999999999999999988764 11 1
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----CC-C
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRM----KV-H 217 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 217 (319)
....++..+..+|...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12357888889999999999999999988754 1111 1357888999999999999999999998662 22 3
Q ss_pred CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc---hhHHHHHHHHHHhCCCC
Q 039029 218 PDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE---GDLAEELLREMVSKGIT 294 (319)
Q Consensus 218 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~ 294 (319)
....++..+...+...|++++|...+++..+.....+.. .....+..+...+...|+ +++|+.++++. +..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV---IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 335678889999999999999999999987642111110 111335678888888898 77777777765 223
Q ss_pred C-ChHHHHHHHHHhhhcchhhhhc
Q 039029 295 P-DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 295 ~-~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
| ....+..+...|...|++++|.
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~ 359 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKAS 359 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3 3456777888999999999986
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=4.5e-15 Score=116.30 Aligned_cols=240 Identities=17% Similarity=0.124 Sum_probs=171.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC------C
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK------G 110 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 110 (319)
...++..+...+...|++++|..+++++.+. ..+.....+..+..++...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999873 23445677888999999999999999999988754 1
Q ss_pred -CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC---
Q 039029 111 -IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK------GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK--- 179 (319)
Q Consensus 111 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 179 (319)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234667888999999999999999999998864 22 223467888889999999999999999988764
Q ss_pred ---CCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-------CCCCChh-hHHH------HHHHHHcCCcHHHHHH
Q 039029 180 ---GMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRM-------KVHPDEV-TYNT------LMHGRCRQGKVEEARR 241 (319)
Q Consensus 180 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~~------l~~~~~~~g~~~~a~~ 241 (319)
+..| ...++..+...|...|++++|...++++.+. ...+... .+.. +...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2223 3467888899999999999999999988653 1122222 2222 2222233444555555
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.+...... .| ....++..+...|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVD--SP------TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ----------CH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCC--Cc------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555432 11 23367889999999999999999999998763
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=4.6e-13 Score=119.38 Aligned_cols=194 Identities=19% Similarity=0.225 Sum_probs=104.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER 94 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (319)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 345666677777777777766421 1112222221 4455666666655431 3455666666666666
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHH
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFE 174 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (319)
++++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 666666666442 255556666666666666666666666555442 22222333555566655555432221
Q ss_pred HHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 175 NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
. .++...|..+...|...|++++|..+|..+ ..|..++..+.+.|++++|.+.+++.
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 1 123344445555566666666666666553 24555555555556666655555554
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=3e-12 Score=114.32 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=155.6
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
..+|..+..++.+.|++++|++.|.+. .+...|..++.++.+.|++++|.+++...++.. ++....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 345555666666666666666666332 244555556666666666666666666555442 222222335555
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
|++.+++++...++ + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 66655555433221 1 124445555666666666666666666653 2566666666666666666
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 170 DQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+..
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6666654 14466666666666666666666554432 234556678888899999999999999887653
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhc--CchhHHHHHHHHHHhCCCCC------ChHHHHHHHHHhhhcchhhhhc
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKN--QEGDLAEELLREMVSKGITP------DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
.+... ..|+.+...|.+. ++..++.+.|..-. +++| +...|..+.-.|.+.|+++.|.
T Consensus 1310 --eraH~------gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1310 --ERAHM------GMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred --ChhHh------HHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33322 4666666666553 44444555544322 2333 4567888888999999999886
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.61 E-value=1.5e-12 Score=104.78 Aligned_cols=299 Identities=10% Similarity=0.013 Sum_probs=208.1
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----hhhHH
Q 039029 14 GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV----TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-PT----ASTYN 84 (319)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 84 (319)
......+...|++++|...+++........+.. ++..+...+...|++++|...+++....... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556778999999999999988764332322 4667778888999999999999988764211 11 23356
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhC----CCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----ccHHHH
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEK----GIV--P-DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ----PTMLTY 153 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 153 (319)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6778889999999999999887653 221 2 3456677888999999999999999998875321 123567
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHH----HHHHHHhcCCcHHHHHHHHHHHHhCCCCCC---hhhHH
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFN----ALIDGHCTNGNIERAFSLLKEMDRMKVHPD---EVTYN 224 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 224 (319)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999998865411111 11111 233457789999999999999876432211 22456
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcch-hhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC----C
Q 039029 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTR-LTYNALIQGLCKNQEGDLAEELLREMVSK----GIT----P 295 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~ 295 (319)
.+...+...|++++|...++++......... .+.. ..+..+..++...|+.++|...+++.... |.. .
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~ 334 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRL---MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 334 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7788899999999999999988654211110 0111 36667788899999999999999987653 221 1
Q ss_pred ChHHHHHHHHHhhhcchhhh
Q 039029 296 DDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 296 ~~~~~~~l~~~~~~~g~~~~ 315 (319)
.......+++.+...+..++
T Consensus 335 ~g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 335 EGEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp THHHHHHHHHHHHHTTCSCH
T ss_pred ccHHHHHHHHHHHhCCCCch
Confidence 22345566677766666543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=3.1e-13 Score=109.26 Aligned_cols=232 Identities=9% Similarity=-0.019 Sum_probs=178.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--C----CcChhhHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKEN----GLVP-TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG--I----MPTASTYN 84 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 84 (319)
....+...|++++|+..|++..+. +..+ ...++..+...+...|+++.|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999998864 1111 34678899999999999999999999987641 1 11245788
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CccHHHHH
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIV-----PDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GI-QPTMLTYT 154 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 154 (319)
.+..++...|++++|...+++..+.... ....++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988653111 11247888999999999999999999998872 23 44567889
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhCC----CCccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCCCCCChhhHHHHH
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAKG----MLPDIVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLM 227 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (319)
.+..++...|++++|...+++..... .+.....+..+...+...|+ .++|..++++... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 99999999999999999999877541 11123345678888889998 7777777776622 122344677889
Q ss_pred HHHHcCCcHHHHHHHHHHHHHc
Q 039029 228 HGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
..|...|++++|...+++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=3.5e-13 Score=116.34 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=105.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 114 DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
+...++.|...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++.++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666666666666666666666666653 334566666666666666666666666666665332 4566666666
Q ss_pred HHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHH
Q 039029 194 GHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
++...|++++|.+.|++..+.. +-+...+..+...|...|++++|.+.|+++++. .|+. ...|..+..++.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~------~~a~~~L~~~l~ 156 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDF------PDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCC------HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC------hHHHhhhhhHHH
Confidence 6666777777777776666543 234556666677777777777777777776663 3332 256666677777
Q ss_pred hcCchhHHHHHHHHHHh
Q 039029 274 KNQEGDLAEELLREMVS 290 (319)
Q Consensus 274 ~~g~~~~A~~~~~~~~~ 290 (319)
..|++++|.+.++++++
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 77777777666666543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=8.9e-13 Score=106.37 Aligned_cols=305 Identities=9% Similarity=-0.026 Sum_probs=205.7
Q ss_pred CCCCcccHHHHHHHH--hccCChHHHHHHHHHHHhC--CCCCC--HHhHHHHHHHH--HhcCChHHHH---------HHH
Q 039029 6 VQPDSYTYGSFVSGM--CKEGRLEEASRMLEQMKEN--GLVPT--AVTYNTLIDGY--CNKGNLEMAF---------SFR 68 (319)
Q Consensus 6 ~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~--~~~~~~~~a~---------~~~ 68 (319)
+.|+..+-+.+-..| .+.+++++|.++++++.+. .+..+ ...|-.++..- ...+...... +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555566666 7899999999999988663 22223 33334333321 1112222222 555
Q ss_pred HHHHHcCCCcCh----hhHHHHHHHHHHcCchhHHHHHHHHHhhCCC--C---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 039029 69 DEMVKQGIMPTA----STYNLLIHELLMERKMVEADDMLKEMGEKGI--V---PDSITYNILINGYCRCGNAKKAFSLHD 139 (319)
Q Consensus 69 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (319)
+.+.....+.+. ..+......+...|++++|...+++..+... . ....++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1233345567789999999999999876421 1 134578888999999999999999999
Q ss_pred HHHHc--CC---C-ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHhcCCcHHHHHHHH
Q 039029 140 EMIHK--GI---Q-PTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GML-PDIVMFNALIDGHCTNGNIERAFSLL 208 (319)
Q Consensus 140 ~~~~~--~~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
+..+. .. . ....++..+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88763 11 1 12457888899999999999999999987763 111 12456788899999999999999999
Q ss_pred HHHHh-----CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc---hhH
Q 039029 209 KEMDR-----MKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE---GDL 280 (319)
Q Consensus 209 ~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~ 280 (319)
++..+ .. +....++..+...+...|++++|...+++..+.....+.. .....+..+...+...|+ +.+
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK---FYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS---CHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99866 32 2336678889999999999999999999998864332221 112345666667777788 777
Q ss_pred HHHHHHHHHhCCCCC-ChHHHHHHHHHhhhcchhhhhc
Q 039029 281 AEELLREMVSKGITP-DDNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 281 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 317 (319)
|+..+++ .+..| ....+..+...|...|++++|.
T Consensus 322 al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 322 LLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 7777766 22223 3345667888899999999986
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=1.2e-12 Score=94.15 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455556666666677776666666554332 55666666677777777777777777766653 34566666667777
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (319)
...|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777666532 255666677777777777777777777776653 334566777777777778888888
Q ss_pred HHHHHHHHc
Q 039029 241 RLLDQMKRR 249 (319)
Q Consensus 241 ~~~~~~~~~ 249 (319)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 877777664
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.8e-12 Score=96.90 Aligned_cols=197 Identities=12% Similarity=-0.034 Sum_probs=153.0
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.|+..+......+.+.|++++|+..|++..+...+++...+..+..++...|++++|++.+++..+... .+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHH
Confidence 345778888999999999999999999999876546777888899999999999999999999998753 3667888999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--cHHHHHHHHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDS-------ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP--TMLTYTSLIF 158 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 158 (319)
.++...|++++|...+++..+..+. +. ..|..+...+...|++++|...|++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999886543 45 557888889999999999999999998763 33 3567777777
Q ss_pred HHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 159 VLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
++...|+ ..++.+...+.. +...+..... ...+.+++|...+++..+..
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 7766554 334554444322 3444443332 34566899999999998864
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=2.9e-12 Score=103.16 Aligned_cols=266 Identities=11% Similarity=0.019 Sum_probs=188.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh----hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC-CC----hHHH
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA----STYNLLIHELLMERKMVEADDMLKEMGEKGIV-PD----SITY 118 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 118 (319)
.......+...|++++|...+++........+. ..+..+...+...|++++|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344555677899999999999998876422222 24566677888899999999999987653111 11 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC----ccHHH
Q 039029 119 NILINGYCRCGNAKKAFSLHDEMIHK----GIQ--P-TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML----PDIVM 187 (319)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 187 (319)
..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999988764 211 2 2456677888899999999999999988764221 12456
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE-VTYN-----TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++..... +... ...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~--~~~ 252 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FANN--HFL 252 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CTTC--GGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CCcc--hhh
Confidence 778888999999999999999988654212221 1222 23344779999999999999876532 2110 011
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhC----CCCCCh-HHHHHHHHHhhhcchhhhhc
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSK----GITPDD-NTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~ 317 (319)
...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 235677888999999999999999988653 222222 35666777888999998875
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=3.1e-13 Score=116.72 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=140.1
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
+..+|+.+...+.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3677888999999999999999999998886433 67788899999999999999999999988875 336778888999
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (319)
++...|++++|++.|++..+..+. +...|..+..++...|++++|++.|++..+.. +.+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998887554 77888999999999999999999999988874 4567888888999999999988
Q ss_pred HHHHHHHHhh
Q 039029 169 ADQLFENFLA 178 (319)
Q Consensus 169 a~~~~~~~~~ 178 (319)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1.3e-12 Score=94.05 Aligned_cols=162 Identities=13% Similarity=0.026 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 123344444444444444555555444444443221 34444444555555
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
.|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+... .+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554442 23444455555555555555555555555544422 2344555555555555555555555
Q ss_pred HHHHHh
Q 039029 208 LKEMDR 213 (319)
Q Consensus 208 ~~~~~~ 213 (319)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=7.3e-12 Score=93.54 Aligned_cols=199 Identities=13% Similarity=0.025 Sum_probs=157.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
.++..+......+...|++++|+..|+..++...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888899999999999999999999998865467788888999999999999999999999987654 778899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc---HHHHHHHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTM-------LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD---IVMFNALI 192 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 192 (319)
.++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|+++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999999874 4445 45778888889999999999999999886 344 46677777
Q ss_pred HHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 193 DGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.+|... +..+++++...+ ..+...+.... ....+.+++|...+++..+. .|+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~ 213 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCC
Confidence 777543 444556665543 23344443333 33457799999999999885 4544
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.51 E-value=4.7e-12 Score=102.13 Aligned_cols=231 Identities=12% Similarity=-0.042 Sum_probs=175.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCC-C----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CC-cChhhHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLV-P----TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG-----IM-PTASTYN 84 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~ 84 (319)
....+...|++++|+..|++..+.... + ...++..+...+...|+++.|...+++..+.. .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 445567899999999999998764211 1 24578889999999999999999999887641 11 1245778
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhC----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCccHHHHHH
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEK----GIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GIQPTMLTYTS 155 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 155 (319)
.+..++...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8899999999999999999987653 111 12457788899999999999999999998872 23344678889
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCC----CCccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKG----MLPDIVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
+..++.+.|++++|...+++..+.. .+.....+..+...|...++ ..+|...+++... .+.....+..+..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 9999999999999999999887642 22224456667777888888 7777777776321 1122346677889
Q ss_pred HHHcCCcHHHHHHHHHHHHH
Q 039029 229 GRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~ 248 (319)
.|...|++++|...|+++.+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=8.3e-13 Score=101.82 Aligned_cols=228 Identities=18% Similarity=0.056 Sum_probs=159.3
Q ss_pred hccCChHHHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCcChhhHHHH
Q 039029 21 CKEGRLEEASRMLEQMKEN-------GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ------G-IMPTASTYNLL 86 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 86 (319)
...|++++|+..|++..+. ..+....++..+...+...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776552 22335668889999999999999999999998765 2 13345678889
Q ss_pred HHHHHHcCchhHHHHHHHHHhhC------C-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCccHHH
Q 039029 87 IHELLMERKMVEADDMLKEMGEK------G-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK------G-IQPTMLT 152 (319)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 152 (319)
..++...|++++|...+++..+. . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 1 1234677888999999999999999999998875 1 1223567
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhC-------CCCc-cHHHHHHHHHHHhcCCc------HHHHHHHHHHHHhCCCCC
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAK-------GMLP-DIVMFNALIDGHCTNGN------IERAFSLLKEMDRMKVHP 218 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~ 218 (319)
+..+..++...|++++|...++++.+. ...+ ....+..+...+...+. +..+...+...... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999988763 1111 12233333333333222 23333333322211 122
Q ss_pred ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
...++..+...|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998763
No 82
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=2.9e-12 Score=105.62 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhCCCCccHHHHH
Q 039029 117 TYNILINGYCRCG---NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ----NRMIEADQLFENFLAKGMLPDIVMFN 189 (319)
Q Consensus 117 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (319)
.+..|...|...| +.++|+..|++..+.| +++...+..+...|... +++++|...|++.. .+ +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5556666666666 6666777776666665 34444445555555443 56667777776665 22 334444
Q ss_pred HHHHH-H--hcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-----cHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 190 ALIDG-H--CTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG-----KVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 190 ~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
.+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++.. .| +
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g----------~ 317 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR----------E 317 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT----------C
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC----------C
Confidence 45444 3 34667777777777766654 4555566666665 33 6777777776655 22 1
Q ss_pred hhhHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhh
Q 039029 262 RLTYNALIQGLCK----NQEGDLAEELLREMVSKGITPDDNTYFSLIEGIA 308 (319)
Q Consensus 262 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (319)
...+..+...|.. ..++++|...|++..+.|. ......|...|.
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHH
Confidence 1455556655554 3367777777777776552 233344444443
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.6e-11 Score=101.28 Aligned_cols=255 Identities=14% Similarity=0.017 Sum_probs=181.4
Q ss_pred CcccHHHHHHHHhccC-----ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-------------------------
Q 039029 9 DSYTYGSFVSGMCKEG-----RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNK------------------------- 58 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------- 58 (319)
++..+..+...+...+ ++++|+..|++..+.|.. ..+..+...|...
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~ 144 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAG 144 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHH
Confidence 5566666777555544 778888888888776532 2344444444433
Q ss_pred ----------CCh----HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC---chhHHHHHHHHHhhCCCCCChHHHHHH
Q 039029 59 ----------GNL----EMAFSFRDEMVKQGIMPTASTYNLLIHELLMER---KMVEADDMLKEMGEKGIVPDSITYNIL 121 (319)
Q Consensus 59 ----------~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (319)
+.+ +.+..+++... ..+...+..+...|...| +.++|.+.|++..+.|.. +...+..+
T Consensus 145 ~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~L 219 (452)
T 3e4b_A 145 LAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHH
Confidence 222 22222222222 223447788888888899 999999999999998754 66666677
Q ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCCccHHHHHHHHHH-H--hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 039029 122 INGYCRC----GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV-L--SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG 194 (319)
Q Consensus 122 ~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (319)
...|... +++++|+..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 7777655 79999999999987 43 45666666666 4 56899999999999999876 56677777777
Q ss_pred HhcCC-----cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHHHHcCCCCCCcccCcchhhH
Q 039029 195 HCTNG-----NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR----QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTY 265 (319)
Q Consensus 195 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (319)
|. .| ++++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.|.. ...
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~----------~A~ 357 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN----------SAD 357 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT----------THH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH----------HHH
Confidence 76 45 9999999999887 3 366777788887776 44899999999999886632 456
Q ss_pred HHHHHHHHh----cCchhHHHHHHHHHHhCCC
Q 039029 266 NALIQGLCK----NQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 266 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 293 (319)
..+...|.. ..+.++|...++...+.|.
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 677777764 4688999999999988763
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.50 E-value=8.5e-13 Score=101.75 Aligned_cols=232 Identities=16% Similarity=0.071 Sum_probs=159.1
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC------C-CCCChHHHHHH
Q 039029 56 CNKGNLEMAFSFRDEMVKQ-------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEK------G-IVPDSITYNIL 121 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 121 (319)
...|++++|+..+++.++. ..+....++..+..++...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666666542 22335677888999999999999999999988754 1 12246678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------C-CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC------CCCc-cHHH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHK------G-IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK------GMLP-DIVM 187 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 187 (319)
...+...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1334577888899999999999999999988765 1122 3567
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCCCCcc
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRM-------KVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRR--GIKPDHIS 257 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 257 (319)
+..+...|...|++++|...++++.+. ...+. ...+..+...+...+....+.. +..+... ...++.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-- 248 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDS-- 248 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCC--
Confidence 888999999999999999999988653 11222 2334444444443333222222 1111111 011111
Q ss_pred cCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 258 FNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
+....++..+...|...|++++|...+++.++.
T Consensus 249 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 -PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123467888999999999999999999988753
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=3.1e-11 Score=92.06 Aligned_cols=213 Identities=13% Similarity=-0.006 Sum_probs=142.3
Q ss_pred cChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CccHHH
Q 039029 78 PTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD---SITYNILINGYCRCGNAKKAFSLHDEMIHKGI--QPTMLT 152 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 152 (319)
.+...+..+...+.+.|++++|...|+++.+..+. + ...+..+..++...|++++|...|++..+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566667777788888888888888888776433 3 56777778888888888888888888877631 122455
Q ss_pred HHHHHHHHhh--------hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH
Q 039029 153 YTSLIFVLSK--------QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224 (319)
Q Consensus 153 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
+..+..++.. .|++++|...|+++++..+. +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6666777777 78888888888877765322 1111111111 1111000 011246
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhc----------CchhHHHHHHHHHHhCCCC
Q 039029 225 TLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKN----------QEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 294 (319)
.+...|...|++++|...|+++++.. |+.. .....+..+..+|... |++++|...++++++. .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAY--PDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--F 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC--CCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--C
Confidence 67888999999999999999998854 3321 1235677888888866 8999999999999986 3
Q ss_pred CCh----HHHHHHHHHhhhcchhhhhc
Q 039029 295 PDD----NTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 295 ~~~----~~~~~l~~~~~~~g~~~~A~ 317 (319)
|+. .....+...+.+.++++++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 544 34445555667777777654
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=9.7e-11 Score=89.33 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=70.9
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYN 84 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 84 (319)
...+-.+...+.+.|++++|+..|+.+.+..+. + ...+..+..++...|++++|+..|+..++..+. .....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445556677777888888888888888775422 2 556777778888888888888888888776321 1234566
Q ss_pred HHHHHHHH--------cCchhHHHHHHHHHhhCC
Q 039029 85 LLIHELLM--------ERKMVEADDMLKEMGEKG 110 (319)
Q Consensus 85 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 110 (319)
.+..++.. .|++++|...|+++.+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 66777777 788888888888877654
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=1.7e-10 Score=84.73 Aligned_cols=131 Identities=11% Similarity=-0.035 Sum_probs=82.1
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc
Q 039029 86 LIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
+..++...|++++|...|++..+..+. +...+..+..++...|++++|...|++..+.. |.+..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 667777777777777777777776544 66777777777777788888888887777764 4456677777766655543
Q ss_pred --HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhh
Q 039029 166 --MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT 222 (319)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (319)
...+...+..... ..|....+.....++...|++++|...|++..+. .|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 2334444444332 2222233334455556667777888888777764 455443
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.38 E-value=4.5e-11 Score=103.59 Aligned_cols=174 Identities=7% Similarity=-0.094 Sum_probs=132.3
Q ss_pred hccCChHHHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 21 CKEGRLEEASRMLEQMK--------ENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..++++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 332 3356678888888888888888888888888764 3366778888888888
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL 172 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (319)
.|++++|...|++..+..+. +...+..+..++.+.|++++ .+.|++..+.+ +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888876544 67788888888888888888 88888888774 45677888888888888888888888
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHhcCCc
Q 039029 173 FENFLAKGMLPDIVMFNALIDGHCTNGN 200 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (319)
|+++.+.... +...+..+..++...++
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 8887776432 35666667777655444
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=4.5e-11 Score=92.74 Aligned_cols=207 Identities=14% Similarity=0.017 Sum_probs=150.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-ChhhHHHHHHHHHHcCchhHH
Q 039029 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GIMP-TASTYNLLIHELLMERKMVEA 99 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 99 (319)
++++|...|++. ...|...|++++|...|.+.... +.++ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777777665 45677889999999999888764 2222 256788899999999999999
Q ss_pred HHHHHHHhhCCCC---C--ChHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHhhhccHHH
Q 039029 100 DDMLKEMGEKGIV---P--DSITYNILINGYCRC-GNAKKAFSLHDEMIHKGI---QP--TMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 100 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~ 168 (319)
+..+++..+.... + ...++..+..+|... |++++|+..|++..+... .+ ...++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887653211 1 145788889999996 999999999999876421 01 13568888999999999999
Q ss_pred HHHHHHHHhhCCCCccH------HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHH--cCC
Q 039029 169 ADQLFENFLAKGMLPDI------VMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV------TYNTLMHGRC--RQG 234 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g 234 (319)
|...|++..+....... ..+..+..++...|++++|...+++..+.. |+.. .+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999886433221 256778888999999999999999987643 3311 2344556664 456
Q ss_pred cHHHHHHHHHHHHH
Q 039029 235 KVEEARRLLDQMKR 248 (319)
Q Consensus 235 ~~~~a~~~~~~~~~ 248 (319)
++++|...|+.+..
T Consensus 255 ~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR 268 (292)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHhccCCc
Confidence 78888888876543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.37 E-value=3.9e-10 Score=86.22 Aligned_cols=250 Identities=13% Similarity=0.089 Sum_probs=170.9
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
|+...-.|++..++.-. .+...........-+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 44455679999888733 3222222223344456778888876632 11233333444443333 322
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CccHHHHHHHHHHHhhhccHHHHHHHHHH
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI-QPTMLTYTSLIFVLSKQNRMIEADQLFEN 175 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (319)
+...+++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778888887765 34666667889999999999999999999877652 24677888999999999999999999999
Q ss_pred HhhCCCCc-----cHHHHHHHHHHHh--c--CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 176 FLAKGMLP-----DIVMFNALIDGHC--T--NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 176 ~~~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
|.+. .| +..+...+..++. . .++..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9876 44 3555566665533 2 34899999999998764 355333444555889999999999999977
Q ss_pred HHcC-----C---CCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH
Q 039029 247 KRRG-----I---KPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 247 ~~~~-----~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
.+.. . .|+ +..++..++......|+ +|.++++++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~------~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLY------KPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSS------HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCC------CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 6531 0 133 33677666666667786 889999999985 56554
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=2.6e-09 Score=82.43 Aligned_cols=223 Identities=14% Similarity=0.052 Sum_probs=178.6
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcChhhHHHHHHHH----HHc-
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG--NLEMAFSFRDEMVKQGIMPTASTYNLLIHEL----LME- 93 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 93 (319)
.+....++|+.+++.+...++. ...+|+.--.++...+ ++++++++++.++..+++ +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 3444557999999999987544 6677888888888888 999999999999988643 556666555544 455
Q ss_pred --CchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc----
Q 039029 94 --RKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK--KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR---- 165 (319)
Q Consensus 94 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 165 (319)
+++++++.+++.+.+..++ +..+|+.-.-++.+.|.++ ++++.++++.+.+ +-|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 7899999999999988766 8889998888888899988 9999999999986 4577888877777777776
Q ss_pred --HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH-HHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCcHHHHH
Q 039029 166 --MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI-ERAFSLLKEMDRMK--VHPDEVTYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 166 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 240 (319)
++++++.+++++...+. |...|+.+...+.+.|+. +.+..+..++.+.+ -..+...+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 88999999999887655 788898888888787774 44556777665432 1346778889999999999999999
Q ss_pred HHHHHHHH
Q 039029 241 RLLDQMKR 248 (319)
Q Consensus 241 ~~~~~~~~ 248 (319)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999986
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=2e-10 Score=77.77 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHh
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (319)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++..... .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34455556666666666666666665543 33455555566666666666666666666655432 24555666666666
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 197 TNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6677777777766665543 234555666666677777777777777766653
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1.2e-10 Score=85.56 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=131.6
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNT----------------LIDGYCNKGNLEMAFSFRDEMVKQG 75 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (319)
.+-.....+.+.|++++|+..|++..+..+. +...|.. +..++...|++++|+..|++.++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3445566788999999999999999885422 4556666 8899999999999999999999885
Q ss_pred CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCccHHHH
Q 039029 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN--AKKAFSLHDEMIHKGIQPTMLTY 153 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 153 (319)
+-+...+..+..++...|++++|...|++..+..+. +...+..+..+|...|+ .+.+...+..... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 337888999999999999999999999999987654 78889888888876654 3445555555532 23333445
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHH
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNAL 191 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (319)
.....++...|++++|...|++.++. .|+......+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 55566777889999999999999886 4565544433
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=5.7e-11 Score=92.16 Aligned_cols=203 Identities=12% Similarity=-0.005 Sum_probs=150.7
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---c--Ch
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKEN----GLVP-TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM---P--TA 80 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~ 80 (319)
..|......+...|++++|++.|.+.... +.++ ...+|+.+..+|...|++++|+..+++.++.... + ..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788899999999999999987653 2221 2568999999999999999999999998764211 1 14
Q ss_pred hhHHHHHHHHHHc-CchhHHHHHHHHHhhCCCCC-C----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH----
Q 039029 81 STYNLLIHELLME-RKMVEADDMLKEMGEKGIVP-D----SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM---- 150 (319)
Q Consensus 81 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 150 (319)
.++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788888999996 99999999999987642111 1 356888999999999999999999999986422211
Q ss_pred --HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-c---HHHHHHHHHHHh--cCCcHHHHHHHHHHHHh
Q 039029 151 --LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-D---IVMFNALIDGHC--TNGNIERAFSLLKEMDR 213 (319)
Q Consensus 151 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 213 (319)
..+..+..++...|++++|...+++.....+.. + ...+..++.++. ..+++++|...|+.+..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 256778888999999999999999988753211 1 123445566664 45678888888877654
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=2.4e-10 Score=77.37 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=8.2
Q ss_pred HHHHHhccCChHHHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQM 36 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~ 36 (319)
+...+...|++++|+.+++++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~ 27 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKA 27 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHH
Confidence 333333333444444433333
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.33 E-value=7.3e-10 Score=84.76 Aligned_cols=183 Identities=13% Similarity=0.042 Sum_probs=137.8
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDSITYNILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
++..+++....+ .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877665 45566667888999999999999999999877654 2367788889999999999999999999998
Q ss_pred HcCCCc-----cHHHHHHHHHHH--hhhc--cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 143 HKGIQP-----TMLTYTSLIFVL--SKQN--RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 143 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
+. .| +..+...++.++ ...| +..+|..+|+++... .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 45 355666666553 3334 899999999998765 34433334445588999999999999997755
Q ss_pred CC---------CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 214 MK---------VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 214 ~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.. -+.+..+...++......|+ +|.+++.++.+. .|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 31 13356666566666666777 889999999884 5665
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.1e-09 Score=80.69 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc----cHHHHHHHH
Q 039029 98 EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN----RMIEADQLF 173 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 173 (319)
+|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666553 55666666666767777777777777776654 44556666666665 5 677777777
Q ss_pred HHHhhCCCCccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHc----CCcHHHHHHHHH
Q 039029 174 ENFLAKGMLPDIVMFNALIDGHCT----NGNIERAFSLLKEMDRMKVH-PDEVTYNTLMHGRCR----QGKVEEARRLLD 244 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 244 (319)
++..+.+ +...+..|...|.. .+++++|...|++..+.+.. .....+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776653 45556666666665 66777777777777665411 015566667777766 667788888887
Q ss_pred HHHHcCCCCCCcccCcchhhHHHHHHHHHhc-C-----chhHHHHHHHHHHhCC
Q 039029 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKN-Q-----EGDLAEELLREMVSKG 292 (319)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 292 (319)
+..+.+ .+ ...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~~--~~-------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RT-------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CT-------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CC-------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777641 11 14556666666543 2 6778888887777765
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=5.6e-11 Score=102.96 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=146.1
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 56 CNKGNLEMAFSFRDEMV--------KQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|++..+..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999998 443 346678888999999999999999999999987554 78899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSL 207 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (319)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.... +...+..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875 4567889999999999999999 9999999987544 678899999999999999999999
Q ss_pred HHHHHhCCCCCC-hhhHHHHHHHHHcCCc
Q 039029 208 LKEMDRMKVHPD-EVTYNTLMHGRCRQGK 235 (319)
Q Consensus 208 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 235 (319)
|+++.+.+ |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99988753 44 5677777777766554
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=3e-11 Score=83.73 Aligned_cols=145 Identities=8% Similarity=-0.040 Sum_probs=86.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK 95 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (319)
|...+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3444556667777777776665432 1133445566667777777777777777776664 2256666777777777777
Q ss_pred hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 96 MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSL-HDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
+++|...|++..+..+. +...+..+...+.+.|+++++.+. +++..+.. |.++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 77777777777665433 566666677777777776654443 45665553 334555555555554444
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=1.1e-09 Score=80.63 Aligned_cols=176 Identities=13% Similarity=0.010 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC----ChHHHHHHH
Q 039029 63 MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG----NAKKAFSLH 138 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 138 (319)
+|++.|++..+.| +...+..+...+...+++++|.++|++..+.+ ++..+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666553 55566666667777777777777777776654 55666666666666 5 778888888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhh----hccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhc----CCcHHHHHHHHH
Q 039029 139 DEMIHKGIQPTMLTYTSLIFVLSK----QNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCT----NGNIERAFSLLK 209 (319)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 209 (319)
++..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .....+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8776654 55666677777766 67888888888887776532 125667777777777 778888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcC-C-----cHHHHHHHHHHHHHcC
Q 039029 210 EMDRMKVHPDEVTYNTLMHGRCRQ-G-----KVEEARRLLDQMKRRG 250 (319)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 250 (319)
+..+. ..+...+..|...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88775 23455667777777643 2 7888998888888776
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=1.5e-09 Score=80.69 Aligned_cols=187 Identities=10% Similarity=-0.023 Sum_probs=122.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh--hhHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVP--TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA--STYNL 85 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 85 (319)
...+..+...+.+.|++++|+..|+++.+..+.. ....+..+..++.+.|++++|+..|+++++..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455667778889999999999999988754321 1357788889999999999999999999887432111 23444
Q ss_pred HHHHHHH------------------cCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039029 86 LIHELLM------------------ERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 86 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH------
Confidence 4455543 45677777777777665322 22222211110 0000000
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
......+...+.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|...++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123456778889999999999998887643211 3567788889999999999999999887764
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=7.3e-09 Score=79.96 Aligned_cols=231 Identities=9% Similarity=0.031 Sum_probs=179.9
Q ss_pred cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC--chhHHHHHHHHHhhCCCCCChHHHHHHHHHH----Hhc---
Q 039029 58 KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER--KMVEADDMLKEMGEKGIVPDSITYNILINGY----CRC--- 128 (319)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 128 (319)
....++|+++++.++..++ -+..+|+.--.++...+ +++++++.++.+....++ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3445789999999998853 36677888878888888 999999999999988766 777777665555 555
Q ss_pred CChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH--HHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc------
Q 039029 129 GNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI--EADQLFENFLAKGMLPDIVMFNALIDGHCTNGN------ 200 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 200 (319)
+++++++.+++++.+.. +-+..+|+.-..++.+.|.++ ++++.++++++..+. +...|+.-.......+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999985 568888888888888888888 999999999988665 77888877666667776
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH-HHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchh
Q 039029 201 IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE-EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGD 279 (319)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 279 (319)
++++++.++++.... +-|...|+.+...+.+.|+.. .+..+..++.+.+ .. .+.+...+..++..|.+.|+.+
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~~----~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-KD----QVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-GT----EESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-CC----CCCCHHHHHHHHHHHHccCCHH
Confidence 889999999988765 457888988888888888744 4555666665433 00 1234578899999999999999
Q ss_pred HHHHHHHHHHhCCCCCChHH
Q 039029 280 LAEELLREMVSKGITPDDNT 299 (319)
Q Consensus 280 ~A~~~~~~~~~~~~~~~~~~ 299 (319)
+|.++++.+.+. +.|-..-
T Consensus 276 ~A~~~~~~l~~~-~Dpir~~ 294 (306)
T 3dra_A 276 ESRTVYDLLKSK-YNPIRSN 294 (306)
T ss_dssp HHHHHHHHHHHT-TCGGGHH
T ss_pred HHHHHHHHHHhc-cChHHHH
Confidence 999999999863 3454333
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=3.7e-10 Score=87.29 Aligned_cols=169 Identities=14% Similarity=-0.002 Sum_probs=135.8
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHH-HH
Q 039029 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMF-NA 190 (319)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 190 (319)
+.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3466777888889999999999999999999875 5578889999999999999999999999887764 343322 22
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHH
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (319)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++++.. |+. .+...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~----~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTA----ADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTG----GGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccc----ccchHHHHHHH
Confidence 3334566677788888999887764 4567788999999999999999999999999864 332 12368899999
Q ss_pred HHHhcCchhHHHHHHHHHHh
Q 039029 271 GLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 271 ~~~~~g~~~~A~~~~~~~~~ 290 (319)
.+...|+.++|...+++.+.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999887654
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.27 E-value=5.9e-11 Score=82.24 Aligned_cols=142 Identities=9% Similarity=-0.110 Sum_probs=77.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHH
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKK 133 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (319)
.+...|++++|+..++...... +-+...+..+..+|.+.|++++|.+.|++..+..+. +..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3344555666666666555431 112334455566666666666666666666655433 55666666666666666666
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHH-HHHHhhCCCCccHHHHHHHHHHHhcCC
Q 039029 134 AFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQL-FENFLAKGMLPDIVMFNALIDGHCTNG 199 (319)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (319)
|+..|++..+.. +.+...+..+..++.+.|+.+++.+. +++..+..+. ++.+|......+...|
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 666666666653 33455666666666666665544433 3555554322 3444544444444433
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=1.6e-10 Score=82.46 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=87.6
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH-H
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE-L 90 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 90 (319)
.+..+...+.+.|++++|+..|++..+..+ .+...+..+..++...|++++|+..++...... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 344555666667777777777766555322 245566666667777777777777776665542 233222221111 1
Q ss_pred HHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhhhccHHHH
Q 039029 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP-TMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 169 (319)
...+....+...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222233355556655554332 45556666666666666666666666665543211 233555556666666666666
Q ss_pred HHHHHHHh
Q 039029 170 DQLFENFL 177 (319)
Q Consensus 170 ~~~~~~~~ 177 (319)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=3.1e-10 Score=87.69 Aligned_cols=167 Identities=11% Similarity=0.010 Sum_probs=132.5
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHH-HH
Q 039029 42 VPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITY-NI 120 (319)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 120 (319)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++....+ +.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHH
Confidence 3456677788888899999999999999998875 33677888889999999999999999998877643 43332 23
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCC
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNG 199 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (319)
....+...++.+.|...+++..... +.+...+..+..++...|++++|...|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3344667788888899999888875 5678889999999999999999999999998875432 2677888999999999
Q ss_pred cHHHHHHHHHHHH
Q 039029 200 NIERAFSLLKEMD 212 (319)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (319)
+.+++...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9888888887754
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=1.6e-10 Score=82.51 Aligned_cols=162 Identities=11% Similarity=0.008 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHH-Hhc
Q 039029 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDG-HCT 197 (319)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 197 (319)
..+...+...|++++|...+++..+.. |.+...+..+..++...|++++|...++++..... +...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 344455555666666666665555442 33445555555666666666666666665544422 22222211111 111
Q ss_pred CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCc
Q 039029 198 NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQE 277 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 277 (319)
.+....+...+++..+.. +.+...+..+...+...|++++|...|+++++....+. +...+..+...+...|+
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ------DGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT------TTHHHHHHHHHHHHHCS
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC------hHHHHHHHHHHHHHhCC
Confidence 111223566666665543 23456667777777777777777777777766432211 12466677777777777
Q ss_pred hhHHHHHHHHHHh
Q 039029 278 GDLAEELLREMVS 290 (319)
Q Consensus 278 ~~~A~~~~~~~~~ 290 (319)
.++|...|++.+.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 7777777776553
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=2.6e-09 Score=79.45 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=122.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c-ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCCh--HHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-P-TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS--ITYN 119 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 119 (319)
+...+..+...+...|++++|+..|+++++..+. + ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888899999999999998876322 1 1356777888899999999999999998876443111 2444
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCC
Q 039029 120 ILINGYCR------------------CGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGM 181 (319)
Q Consensus 120 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (319)
.+..++.. .|++++|...|+++.+.. |-+........... .. ...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----~~------~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----FL------KDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----HH------HHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----HH------HHHH-----
Confidence 44445443 345666666666665542 21222221111100 00 0000
Q ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 182 LPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
......+...|.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112346678889999999999999998753 33 2468889999999999999999999988864
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=3.1e-10 Score=88.68 Aligned_cols=232 Identities=9% Similarity=0.021 Sum_probs=144.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHH
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
..|++++|.+++++..+.... . + +...++++.|...|... ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 357788899988877653211 1 0 11146677777766654 345666777777777
Q ss_pred HHHHHhhCC----CC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-cHHHHHHHHHHHhhhccHHHHHH
Q 039029 102 MLKEMGEKG----IV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GIQP-TMLTYTSLIFVLSKQNRMIEADQ 171 (319)
Q Consensus 102 ~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 171 (319)
.|.+..+.. .. .-..+|+.+...|...|++++|+..|++.... |-+. ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 777665421 10 01346777778888888888888888876653 2111 13567777777877 88888888
Q ss_pred HHHHHhhCCCC---c--cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC----CCCC-hhhHHHHHHHHHcCCcHHHHHH
Q 039029 172 LFENFLAKGML---P--DIVMFNALIDGHCTNGNIERAFSLLKEMDRMK----VHPD-EVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 172 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
.|++....... + ...++..+...|...|++++|...|++..+.. ..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877653111 1 14567778888888899999998888876531 1111 2255666677778899999999
Q ss_pred HHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHH
Q 039029 242 LLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284 (319)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (319)
.|++.. . .|+... .........++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~-~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSG-SEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTT-SHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCC-CHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 998887 3 333210 01112344455554 56676655553
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=6.9e-10 Score=94.43 Aligned_cols=155 Identities=10% Similarity=-0.037 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHH
Q 039029 23 EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDM 102 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (319)
.|++++|++.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888776532 256778888888888888888888888888764 33567777888888888888888888
Q ss_pred HHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhC
Q 039029 103 LKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ---NRMIEADQLFENFLAK 179 (319)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (319)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776543 67778888888888888888888888887764 44667777788888888 8888888888887776
Q ss_pred CC
Q 039029 180 GM 181 (319)
Q Consensus 180 ~~ 181 (319)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=6.2e-10 Score=94.70 Aligned_cols=152 Identities=7% Similarity=-0.130 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 039029 59 GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLH 138 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (319)
|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555554432 123445555555555555555555555555554322 4455555555555555555555555
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC---CcHHHHHHHHHHHHhC
Q 039029 139 DEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN---GNIERAFSLLKEMDRM 214 (319)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 214 (319)
++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555543 334445555555555555555555555555544322 344455555555555 5555555555555443
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=1.7e-08 Score=86.59 Aligned_cols=236 Identities=8% Similarity=-0.035 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHH-HHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 039029 62 EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD-DMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140 (319)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (319)
+.+..+|++++... +-....|...+..+...|+.++|. .+|++..... +.+...|...+...-+.|++++|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556777777653 446778888888888899999997 9999998753 34666778888889999999999999999
Q ss_pred HHHcC---------CCc------------cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-
Q 039029 141 MIHKG---------IQP------------TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN- 198 (319)
Q Consensus 141 ~~~~~---------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 198 (319)
+.... ..| ...+|...+....+.|+.+.|..+|..+.+....+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 88641 013 13467777777788899999999999998761112234444333333344
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCch
Q 039029 199 GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG 278 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 278 (319)
++.+.|..+|+...+. .+.+...|...+......|+.+.|..+|++++.....+.. ....|...+.--.+.|+.
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~-----~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL-----LKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH-----HHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHcCCH
Confidence 4589999999998775 3446667778888888899999999999999876432211 236788888888899999
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHh
Q 039029 279 DLAEELLREMVSKGITPDDNTYFSLIEGI 307 (319)
Q Consensus 279 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 307 (319)
+.+..+.+++.+. .|+......+..-|
T Consensus 558 ~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 558 NSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 9999999999986 45555555555444
No 113
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.16 E-value=7.9e-08 Score=75.08 Aligned_cols=229 Identities=11% Similarity=0.034 Sum_probs=171.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc-
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG-NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME- 93 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 93 (319)
+-....+.+..++|+++++.+...+.. +..+|+.--.++...+ .+++++++++.++....+ +..+|+.-..++...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhc
Confidence 333445556678999999999987644 6677888888888888 599999999999988644 777888777777776
Q ss_pred C-chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 94 R-KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAK--------KAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 94 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
+ ++++++++++++.+..++ +..+|+.-.-++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 889999999999988765 8888887766666666666 8999999999986 457888888888887777
Q ss_pred c-------HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH--------------------HHHHHHHHHHHhCC--
Q 039029 165 R-------MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI--------------------ERAFSLLKEMDRMK-- 215 (319)
Q Consensus 165 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-- 215 (319)
. ++++++.+.+++...+. |...|+-+-..+.+.|.. .........+...+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 5 68888999888887554 777887766666655543 33333333333321
Q ss_pred ---CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHc
Q 039029 216 ---VHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 216 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (319)
-.++...+..++..|...|+.++|.++++.+.+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1356778888999999999999999999998754
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=1.3e-08 Score=79.54 Aligned_cols=199 Identities=13% Similarity=0.021 Sum_probs=139.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC----C-cChhhHHHHHHHHHHcCchh
Q 039029 23 EGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI----M-PTASTYNLLIHELLMERKMV 97 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~ 97 (319)
.++++.|...|.+. ...|...|++++|...|.+...... . .-..+|+.+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 45666666666654 4567788999999999888765421 1 11457788888899999999
Q ss_pred HHHHHHHHHhhC----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHhhhccHH
Q 039029 98 EADDMLKEMGEK----GIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHKGI---QP--TMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 98 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~ 167 (319)
+|...|++..+. |-. ....++..+..+|.. |++++|+..|++...... .+ ...++..+..++.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 999999887543 211 124577788888888 999999999998876411 11 1467888889999999999
Q ss_pred HHHHHHHHHhhC----CCCcc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHcCCcH
Q 039029 168 EADQLFENFLAK----GMLPD-IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE------VTYNTLMHGRCRQGKV 236 (319)
Q Consensus 168 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 236 (319)
+|...|++.... +..+. ...+..+..++...|++++|...|++.. .. |+. .....++.++ ..|+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI--PGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--TTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC--CCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 999999988764 21111 2356667778888899999999999987 42 321 1234445555 56776
Q ss_pred HHHHH
Q 039029 237 EEARR 241 (319)
Q Consensus 237 ~~a~~ 241 (319)
+.+..
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=2.3e-08 Score=77.53 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=123.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CccH----HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC-cc----HHHHH
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGI-QPTM----LTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PD----IVMFN 189 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 189 (319)
..+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999887421 2221 13334666777888999999999998874222 22 34688
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHh----C-CCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 190 ALIDGHCTNGNIERAFSLLKEMDR----M-KVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
.+...|...|++++|...++++.+ . +..+. ..++..+...|...|++++|...+++.++.....+. ...-..
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~--~~~~~~ 237 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS--MALIGQ 237 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--CTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc--HHHHHH
Confidence 899999999999999999998863 1 11122 337788999999999999999999998764221111 111236
Q ss_pred hHHHHHHHHHhcCc-hhHHHHHHHHHHh
Q 039029 264 TYNALIQGLCKNQE-GDLAEELLREMVS 290 (319)
Q Consensus 264 ~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 290 (319)
+|..+..++.+.|+ +++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 78899999999995 6999999998865
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=3.4e-07 Score=71.53 Aligned_cols=244 Identities=9% Similarity=0.031 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcC-chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 49 NTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMER-KMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
+.+..........++|+++++.++..+.. +..+|+.--..+...+ .+++++.+++.+....++ +..+|+.-..++.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 33333444455668899999999988633 6677887777777788 599999999999998776 88889888777777
Q ss_pred c-C-ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH--------HHHHHHHHHhhCCCCccHHHHHHHHHHHhc
Q 039029 128 C-G-NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI--------EADQLFENFLAKGMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 128 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
. + ++++++++++++.+.. +-+..+|+.-..++.+.|.++ ++++.++++++..+. +...|+.......+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 6 7 8999999999999875 557788877777777777776 899999999987655 78888888777777
Q ss_pred CCc-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH--------------------HHHHHHHHHHHHcC
Q 039029 198 NGN-------IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV--------------------EEARRLLDQMKRRG 250 (319)
Q Consensus 198 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~ 250 (319)
.+. ++++++.++++.... +-|...|+.+-..+.+.|+. .........+....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 775 688888988887764 45677787776666666553 22222222222211
Q ss_pred CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHH
Q 039029 251 IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTY 300 (319)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 300 (319)
.+. ....++...+..++..|...|+.++|.++++.+.+. ..|-..-|
T Consensus 293 -~~~-~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~y 339 (349)
T 3q7a_A 293 -LPE-DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGY 339 (349)
T ss_dssp -CCS-SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHH
T ss_pred -ccc-ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHH
Confidence 000 011356678899999999999999999999998754 44544333
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=1.9e-08 Score=73.91 Aligned_cols=129 Identities=12% Similarity=-0.129 Sum_probs=99.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+...|++++|+..|++.. .|+..++..+..++...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556777788888999988887763 4577788888888888889999988888888764 346677888888888
Q ss_pred HcCchhHHHHHHHHHhhCCCCC---------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 92 MERKMVEADDMLKEMGEKGIVP---------------DSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
..|++++|...|++..+..... ....+..+..++...|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887753321 12677778888888888888888888887753
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.08 E-value=1.2e-07 Score=73.48 Aligned_cols=164 Identities=7% Similarity=-0.031 Sum_probs=123.9
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCC-CCh----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cc----HHHHH
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIV-PDS----ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ-PT----MLTYT 154 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 154 (319)
..+..+...|++++|...+++..+.... |+. ..+..+...+...|++++|+..+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999998875322 221 13334667777888999999999999884221 22 33688
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhC-----CCCcc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----CCCCC-hhhH
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAK-----GMLPD-IVMFNALIDGHCTNGNIERAFSLLKEMDRM----KVHPD-EVTY 223 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~ 223 (319)
.+..+|...|++++|...++++.+. +..+. ..++..+...|...|++++|...+++..+. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999988741 11222 347888999999999999999999987543 22222 5678
Q ss_pred HHHHHHHHcCCc-HHHHHHHHHHHHH
Q 039029 224 NTLMHGRCRQGK-VEEARRLLDQMKR 248 (319)
Q Consensus 224 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 248 (319)
..+..+|...|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999994 6999999998765
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=2.4e-08 Score=73.42 Aligned_cols=129 Identities=10% Similarity=-0.028 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+..+. +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34556667777888888888887663 456777888888888888888888888887776433 6677778888888
Q ss_pred hcCChHHHHHHHHHHHHcCCC--------------c-cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQ--------------P-TMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
..|++++|...+++..+.... | ....+..+..++...|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888774211 1 12566777777777777777777777777654
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=3.1e-09 Score=81.83 Aligned_cols=195 Identities=9% Similarity=-0.014 Sum_probs=117.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45566777777788888888888888877764 236677777888888888888888888888776543 6777788888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER 203 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (319)
++...|++++|...|++..+.+ +.+...+...+....+.. .... +..........+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 8888888888888888877642 111111111111111111 1111 1112222233344433333222 2578888
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHcC-CcHHHHHHHHHHHHHc
Q 039029 204 AFSLLKEMDRMKVHPDE-VTYNTLMHGRCRQ-GKVEEARRLLDQMKRR 249 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 249 (319)
|.+.++...+. .|+. .....+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888877664 3443 3333333334443 5678888888877653
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.8e-08 Score=67.30 Aligned_cols=96 Identities=16% Similarity=-0.000 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
.+......+.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++..+..+. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444455555555555555555554443 224444445555555555555555555555444322 4444555555555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 039029 127 RCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (319)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555544
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=4.1e-08 Score=68.87 Aligned_cols=127 Identities=13% Similarity=-0.039 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYC 126 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (319)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 44555555666666666666666665543 224555555666666666666666666666554322 4555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHH--HHHHHHhhhccHHHHHHHHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYT--SLIFVLSKQNRMIEADQLFENF 176 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 176 (319)
..|++++|...+++..... +.+...+. ..+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666665543 22333332 2222244555666665555543
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.04 E-value=8.4e-08 Score=74.34 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc-H----HHHHHHHHHHhhhccHHHHHHHHHHHhhCCC---Ccc--H
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT-M----LTYTSLIFVLSKQNRMIEADQLFENFLAKGM---LPD--I 185 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 185 (319)
..+...+..+...|++++|.+.+.+..+...... . ..+..+...+...|++++|...+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567788889999999999988877532211 1 2234455667788899999999998875421 111 4
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccC
Q 039029 186 VMFNALIDGHCTNGNIERAFSLLKEMDRM-KVHPD-----EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN 259 (319)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (319)
.+++.+...|...|++++|...++++.+. ...|+ ..++..+...|...|++++|...+++..+.....+. ..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~--~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS--MA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB--CS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--HH
Confidence 57888999999999999999999987631 01122 257888999999999999999999998764311111 01
Q ss_pred cchhhHHHHHHHHHhcCchhHH-HHHHHHHHh
Q 039029 260 PTRLTYNALIQGLCKNQEGDLA-EELLREMVS 290 (319)
Q Consensus 260 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 290 (319)
....+|..+...|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1236788999999999999999 777887654
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.9e-08 Score=67.15 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.+......+.+.|++++|++.|++..+..+. +...|..+..++.+.|++++|+..+++..+.+ +.+...+..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3344444555555555555555555444322 44455555555555555555555555555443 233444555555555
Q ss_pred hhccHHHHHHHHHHHhhC
Q 039029 162 KQNRMIEADQLFENFLAK 179 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~ 179 (319)
..|++++|.+.|++.++.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555443
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.03 E-value=2.7e-09 Score=82.18 Aligned_cols=197 Identities=11% Similarity=-0.036 Sum_probs=134.5
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
.+...+..+...+.+.|++++|+..|++...... .+...|..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456788889999999999999999999988643 378889999999999999999999999999875 34678889999
Q ss_pred HHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHH
Q 039029 88 HELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMI 167 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (319)
.++...|++++|...|++..+..+. +...+...+....+. .+... +........+.+......+... ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999998764321 111111111111111 11111 1222233334444444444332 368999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHhC
Q 039029 168 EADQLFENFLAKGMLPDIVMFNALIDGHCTN-GNIERAFSLLKEMDRM 214 (319)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 214 (319)
+|.+.++...+... .+......+...+.+. +.++++.++|..+.+.
T Consensus 153 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999988877632 2344444444445554 6688899999887653
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=3e-08 Score=69.60 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
..+..+...+...|++++|...+++..... +.+..++..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 445566667777777777777777777653 44566777777777777777777777777776533 2566777777777
Q ss_pred hcCCcHHHHHHHHHHHHhCCCCCChhhHHH--HHHHHHcCCcHHHHHHHHHHHHH
Q 039029 196 CTNGNIERAFSLLKEMDRMKVHPDEVTYNT--LMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 78888888888887776653 223334433 33336667788888887776543
No 127
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.01 E-value=9e-08 Score=82.13 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHH
Q 039029 28 EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAF-SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106 (319)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (319)
.+..+|+++... .+-....|...+..+...|+.+.|. ++|++.... .+.+...|..++....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445556665554 2335566666666666666666665 666666654 2334444555666666666666666666666
Q ss_pred hhCCC---------CC------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhhh-
Q 039029 107 GEKGI---------VP------------DSITYNILINGYCRCGNAKKAFSLHDEMIHK-GIQPTMLTYTSLIFVLSKQ- 163 (319)
Q Consensus 107 ~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~- 163 (319)
.+... .| ....|...+....+.|+.+.|..+|....+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 54210 02 1234666666666666666777777666654 1 11222333222222222
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCcHHHHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP--DEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
++.+.|.++|+..++. .+-+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3466666776666655 22244555566665566666777777777666543211 23455666666666677767777
Q ss_pred HHHHHHHc
Q 039029 242 LLDQMKRR 249 (319)
Q Consensus 242 ~~~~~~~~ 249 (319)
+.+++.+.
T Consensus 563 v~~R~~~~ 570 (679)
T 4e6h_A 563 LEKRFFEK 570 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666654
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=2.9e-09 Score=73.42 Aligned_cols=103 Identities=11% Similarity=-0.035 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhh
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|...|+++.+. .|+.. ..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~------~~ 106 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDY------TP 106 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCC------HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCc------HH
Confidence 4566677777888888888888888887764 345677788888888888888888888888774 34432 67
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
|..+..+|...|++++|...|++.++. .|+..
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 778888888888888888888888875 35543
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.99 E-value=1.4e-08 Score=73.96 Aligned_cols=156 Identities=12% Similarity=-0.017 Sum_probs=87.0
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcChhhHHHHHHHHHHcCc
Q 039029 21 CKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ----GI-MPTASTYNLLIHELLMERK 95 (319)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 95 (319)
...|++++|.++++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888885554443 22235567777777788888888888887777652 11 1223455666666777777
Q ss_pred hhHHHHHHHHHhhC----CCCC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCcc--HHHHHHHHHHHhhhc
Q 039029 96 MVEADDMLKEMGEK----GIVP--DSITYNILINGYCRCGNAKKAFSLHDEMIHKG---IQPT--MLTYTSLIFVLSKQN 164 (319)
Q Consensus 96 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~ 164 (319)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..... -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665432 1111 23345556666666677777766666655320 0111 123345555555566
Q ss_pred cHHHHHHHHHHHh
Q 039029 165 RMIEADQLFENFL 177 (319)
Q Consensus 165 ~~~~a~~~~~~~~ 177 (319)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555443
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=9.2e-09 Score=73.29 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=91.3
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHH-HHHcCch--
Q 039029 20 MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHE-LLMERKM-- 96 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 96 (319)
+...|++++|+..++...+... .+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3566788888888888776543 366788888888888889999988888888764 2356667777777 6678887
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
++|...+++..+..+. +...+..+...+...|++++|...++++....
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888876543 66777888888888888888888888887763
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=1.4e-08 Score=73.96 Aligned_cols=156 Identities=10% Similarity=-0.040 Sum_probs=89.8
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHhhhccH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK----GI-QPTMLTYTSLIFVLSKQNRM 166 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 166 (319)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666644333321 2224555666666666667777766666666542 11 11234566666666777777
Q ss_pred HHHHHHHHHHhhC----CCCc--cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCc
Q 039029 167 IEADQLFENFLAK----GMLP--DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKV-HPD----EVTYNTLMHGRCRQGK 235 (319)
Q Consensus 167 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 235 (319)
++|...+++.... +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777776665543 1111 134456666777777777777777776643210 011 2235667777888888
Q ss_pred HHHHHHHHHHHHH
Q 039029 236 VEEARRLLDQMKR 248 (319)
Q Consensus 236 ~~~a~~~~~~~~~ 248 (319)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877665
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.98 E-value=6.6e-08 Score=64.08 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=47.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
..+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 344444555555555555555555554432 123344444555555555555555555555443222 444455555555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039029 126 CRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (319)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555444
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=2.7e-08 Score=66.90 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL 90 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (319)
..|..+...+.+.|++++|+..|++..+... .+..++..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 3344455555555555555555555544321 134444445555555555555555555544432 12334444444444
Q ss_pred HHcCchhHHHHHHHHHhh
Q 039029 91 LMERKMVEADDMLKEMGE 108 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~ 108 (319)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=1.7e-07 Score=72.57 Aligned_cols=170 Identities=10% Similarity=0.004 Sum_probs=127.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-----hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC---CC-
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT-----ASTYNLLIHELLMERKMVEADDMLKEMGEKGIV---PD- 114 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~- 114 (319)
....+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++..+.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 456777788888999999999999988877632211 123445666777888999999999988754221 11
Q ss_pred -hHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCc----cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC----CCc
Q 039029 115 -SITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQP----TMLTYTSLIFVLSKQNRMIEADQLFENFLAKG----MLP 183 (319)
Q Consensus 115 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 183 (319)
..+++.+...|...|++++|...+++..+. ..+. ...++..+..+|...|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 458889999999999999999999988732 1111 12588888999999999999999999876541 111
Q ss_pred -cHHHHHHHHHHHhcCCcHHHH-HHHHHHHHh
Q 039029 184 -DIVMFNALIDGHCTNGNIERA-FSLLKEMDR 213 (319)
Q Consensus 184 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 213 (319)
-..++..+..+|...|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167788899999999999999 777777643
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=1.8e-08 Score=67.56 Aligned_cols=117 Identities=10% Similarity=-0.057 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+..+. +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 344555555555555555555555555442 224445555555555566666666666555554322 455555556666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc
Q 039029 126 CRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (319)
...|++++|...+++..... +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666655543 3344555555555555443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.6e-08 Score=75.22 Aligned_cols=129 Identities=11% Similarity=-0.034 Sum_probs=71.4
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHc
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPD--EVTYNTLMHGRCR 232 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 232 (319)
.....+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34455566666666666666655433 222244444445666667777776666444321 111 2245556666667
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 233 QGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.|++++|+..|++.......|.. ..........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~-----~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEAC-----ARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTT-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777766532211321 1134455556666677777777777777664
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=6.5e-08 Score=76.45 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=74.0
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--------------hhhHHHHHHHHHHcCchhHHHHHHHHHhhC
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT--------------ASTYNLLIHELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+...+..+...+.+.|++++|+..|++.++...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777776532211 345555666666666666666666666555
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
.+. +...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 332 55555666666666666666666666665553 33455555555555555555555
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.95 E-value=4.4e-08 Score=65.87 Aligned_cols=115 Identities=11% Similarity=-0.034 Sum_probs=64.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34455666666666666666666666666543 224555556666666666666666666666554322 4555566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 6666666666666666665542 223334444444443
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.95 E-value=4.9e-06 Score=64.75 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=162.9
Q ss_pred hccCChH-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcChhhHHHHHHH
Q 039029 21 CKEGRLE-EASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN----------LEMAFSFRDEMVKQGIMPTASTYNLLIHE 89 (319)
Q Consensus 21 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (319)
.+.|.+. +|+.+++.+...++. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556654 899999999987544 55667654444444333 67889999999887643 77888877777
Q ss_pred HHHcCc--hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh---
Q 039029 90 LLMERK--MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN-AKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--- 163 (319)
Q Consensus 90 ~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 163 (319)
+...++ +++++.+++.+.+..+. |..+|+.-.-++...|. ++++++.++++.+.. +-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 777774 88999999999998766 88899888888888888 589999999999986 55777887776666555
Q ss_pred -----------ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHhCCCCCChh
Q 039029 164 -----------NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN-----------GNIERAFSLLKEMDRMKVHPDEV 221 (319)
Q Consensus 164 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 221 (319)
+.++++++.+...+...+. |...|+-+-..+.+. +.++++.+.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-
Confidence 5688899999998887544 677777554444444 4578888999998875 4554
Q ss_pred hHHHHHHH-----HHcCCcHHHHHHHHHHHHHcC
Q 039029 222 TYNTLMHG-----RCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 222 ~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~ 250 (319)
.|+.+..+ ....|..+++..++.++++.+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 34432222 224677888889999988743
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.94 E-value=8.2e-08 Score=63.62 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.... +.+..++..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444445555555555555555444322 134444444445555555555555555444432 223444444444444
Q ss_pred hhccHHHHHHHHHHHhh
Q 039029 162 KQNRMIEADQLFENFLA 178 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~ 178 (319)
..|++++|...++++..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=6.4e-08 Score=64.75 Aligned_cols=115 Identities=17% Similarity=0.022 Sum_probs=50.3
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+...|++++|+..|++...... .+...+..+..++...|++++|...++...+.. +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 344444444444455555554444443321 133444444444444455555554444444432 123334444444444
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (319)
..|++++|...+++..+..+. +...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 445555555544444443221 3334444444444333
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=2.5e-08 Score=68.74 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLS 161 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (319)
.+..+...+.+.|++++|...|++.....+. +...|..+..++...|++++|+..|++..... |.+...+..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4444445555555555555555555554332 45555555555555555555555555555543 333445555555555
Q ss_pred hhccHHHHHHHHHHHhhC
Q 039029 162 KQNRMIEADQLFENFLAK 179 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~ 179 (319)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=8.5e-09 Score=71.08 Aligned_cols=98 Identities=15% Similarity=-0.004 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhh
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|...|++++... |+. ...
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~------~~~ 91 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXE------PRF 91 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC------THH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCC------chH
Confidence 3445555556666666666666666665543 3345556666666666666666666666666532 222 145
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
+..+..+|...|++++|...|++.++.
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666666666666666553
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=2.9e-08 Score=70.65 Aligned_cols=120 Identities=12% Similarity=0.107 Sum_probs=68.9
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH-HhhhccH--HH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV-LSKQNRM--IE 168 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 168 (319)
..|++++|...+++..+..+. +...+..+...+...|++++|...|++..... +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666665554332 55566666666666666666666666666553 3345555555555 5566665 66
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
|...++++.+.... +...+..+...|...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666655322 4555666666666666666666666666554
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=2.9e-08 Score=78.46 Aligned_cols=132 Identities=10% Similarity=-0.084 Sum_probs=112.8
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT--------------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (319)
...+..+...+.+.|++++|+..|++......... ..+|..+..++.+.|++++|+..+++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45677888999999999999999999988653322 5789999999999999999999999999885
Q ss_pred CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 039029 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKA-FSLHDEMIH 143 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 143 (319)
+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|+++++ ...+..|..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999987554 778889999999999999888 456666654
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.8e-08 Score=76.07 Aligned_cols=187 Identities=7% Similarity=-0.085 Sum_probs=118.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCcC---------------
Q 039029 22 KEGRLEEASRMLEQMKENGLVPTAVTYNTL-------IDGYCNKGNLEMAFSFRDEMVKQGIMPT--------------- 79 (319)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 79 (319)
..++...|.+.|.++....+. ....|..+ ...+...++..+++..+...... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578888888888888876433 55667666 34444444444454444444331 111
Q ss_pred -------hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc--H
Q 039029 80 -------ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT--M 150 (319)
Q Consensus 80 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 150 (319)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123345566777888888888888777654 332255555667778888888888887544321 111 2
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 151 LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP--DIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356677777888888888888888776443213 2345556666777788888888888887765
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=6.7e-09 Score=75.52 Aligned_cols=151 Identities=12% Similarity=-0.046 Sum_probs=73.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---------------h
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT---------------A 80 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~ 80 (319)
.+......|+++++.+.|+.-... .......+..+...+...|++++|+..|++.++...... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 334444455666666555432221 011344566677777778888888888887776531111 1
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
..+..+..++...|++++|...+++..+..+. +...+..+..++...|++++|...|++..... +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 44555555555555666665555555554322 44555555555555555555555555555542 23444444444444
Q ss_pred hhhccHHHH
Q 039029 161 SKQNRMIEA 169 (319)
Q Consensus 161 ~~~~~~~~a 169 (319)
...++..++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444433
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.86 E-value=2.2e-08 Score=68.98 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRC 231 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (319)
.+..+...+...|++++|...|+.+...... +...|..+..+|...|++++|...|++..... +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3333444444444444444444444443221 34444444444444444444444444444432 223334444444445
Q ss_pred cCCcHHHHHHHHHHHHH
Q 039029 232 RQGKVEEARRLLDQMKR 248 (319)
Q Consensus 232 ~~g~~~~a~~~~~~~~~ 248 (319)
..|++++|...|+++++
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554444
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2e-07 Score=62.15 Aligned_cols=94 Identities=17% Similarity=-0.008 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHh
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCR 127 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (319)
+......+...|++++|+..|++.++.. +.+...+..+..++...|++++|...+++..+..+. +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 3444444444444444444444444432 113344444444444444444444444444443222 33344444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 039029 128 CGNAKKAFSLHDEMIH 143 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~ 143 (319)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4444444444444433
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.81 E-value=4.7e-07 Score=59.19 Aligned_cols=91 Identities=11% Similarity=-0.076 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC
Q 039029 50 TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG 129 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (319)
.+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..+..+. +...+..+..++...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHh
Confidence 33333334444444444444433332 112333333333333444444444444433333211 2333333334444444
Q ss_pred ChHHHHHHHHHHH
Q 039029 130 NAKKAFSLHDEMI 142 (319)
Q Consensus 130 ~~~~a~~~~~~~~ 142 (319)
++++|...+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444433
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1e-06 Score=72.14 Aligned_cols=197 Identities=11% Similarity=-0.008 Sum_probs=133.6
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTA----------------VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-PT 79 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 79 (319)
...+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+...-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678889999999999998876433211 23677888999999999999988887653111 11
Q ss_pred h----hhHHHHHHHHHHcCchhHHHHHHHHHhhC----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--C---
Q 039029 80 A----STYNLLIHELLMERKMVEADDMLKEMGEK----GIV-PDSITYNILINGYCRCGNAKKAFSLHDEMIHK--G--- 145 (319)
Q Consensus 80 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 145 (319)
. .+.+.+...+...|+.+.+..+++..... +.. .-..++..+...+...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333344567888888888876532 222 23456778888889999999999988887653 1
Q ss_pred CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GMLPD--IVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.+....++..++..|...|+++.|..++++.... ..++. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122457778888888899999998888876643 11212 24556667777888888888887777643
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=2.6e-07 Score=64.78 Aligned_cols=99 Identities=10% Similarity=0.011 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
+...+..+...+...|++++|...|++.++.... +...|..+..+|...|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455666666667777777777777776665332 55666666667777777777777777766653 234556666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHc
Q 039029 229 GRCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~ 249 (319)
+|...|++++|...|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777766664
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=1.1e-07 Score=63.62 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcc-cCcchh
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHIS-FNPTRL 263 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (319)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|.+.+++.++.. |+... ...-..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cccchhhHHHHH
Confidence 3456778888899999999999999988764 3457788889999999999999999999988743 22110 000124
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHH
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSL 303 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 303 (319)
+|..+..++...|++++|++.|++.+.. .||+.+...+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 6778888999999999999999998874 5777665443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3.5e-07 Score=60.91 Aligned_cols=94 Identities=9% Similarity=0.009 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
|..+...+.+.|++++|+..|++..+... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 34444444555555555555555444321 134444455555555555555555555554442 1234444444455555
Q ss_pred cCchhHHHHHHHHHhh
Q 039029 93 ERKMVEADDMLKEMGE 108 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~ 108 (319)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555554443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=7e-07 Score=58.33 Aligned_cols=97 Identities=12% Similarity=-0.095 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344445555555555555555555555442 234445555555555555555555555555544221 344555555555
Q ss_pred hcCCcHHHHHHHHHHHHhC
Q 039029 196 CTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~ 214 (319)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555543
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=2.2e-05 Score=61.11 Aligned_cols=234 Identities=9% Similarity=0.009 Sum_probs=166.0
Q ss_pred HhcCCh-HHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc----------hhHHHHHHHHHhhCCCCCChHHHHHHHHH
Q 039029 56 CNKGNL-EMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK----------MVEADDMLKEMGEKGIVPDSITYNILING 124 (319)
Q Consensus 56 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (319)
.+.|.+ ++|+++++.++..++. +..+|+.--.++...+. +++++.+++.+....++ +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 345554 5899999999987532 55556554444443333 67889999999887666 88899888888
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhcc-HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC---
Q 039029 125 YCRCG--NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNR-MIEADQLFENFLAKGMLPDIVMFNALIDGHCTN--- 198 (319)
Q Consensus 125 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 198 (319)
+.+.+ .+++++.+++++.+.. +-+..+|+.-..++...|. ++++++.+..+++..+. |...|+.........
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 88888 4899999999999986 5578888888777888888 58999999999988655 777777665555443
Q ss_pred -----------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-----------CcHHHHHHHHHHHHHcCCCCCCc
Q 039029 199 -----------GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-----------GKVEEARRLLDQMKRRGIKPDHI 256 (319)
Q Consensus 199 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ 256 (319)
+.++++.+.+....... +-|...|+.+-..+.+. +.++++++.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-
Confidence 45788899999887764 45677777665555554 4588999999999985 4543
Q ss_pred ccCcchhhHHHHHH-----HHHhcCchhHHHHHHHHHHhCCCCCChH-HHHHHHHH
Q 039029 257 SFNPTRLTYNALIQ-----GLCKNQEGDLAEELLREMVSKGITPDDN-TYFSLIEG 306 (319)
Q Consensus 257 ~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 306 (319)
.|..+.. .....|..+++...+.++.+. .|-.. -|..+...
T Consensus 272 -------~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 272 -------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSK 318 (331)
T ss_dssp -------HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--CcchhhHHHHHHHH
Confidence 3432222 222457778889999999874 45433 34444333
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.79 E-value=2.5e-07 Score=63.19 Aligned_cols=97 Identities=10% Similarity=-0.198 Sum_probs=63.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
..+..+...+...|++++|...|+.....+ +.+...|..+..++...|++++|...|++.....+. +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 345555666666777777777777766654 235566666666777777777777777776665433 556666666777
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039029 126 CRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (319)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=5.4e-07 Score=60.90 Aligned_cols=98 Identities=11% Similarity=-0.122 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchh
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRL 263 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+.. |+ +..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~------~~~ 78 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQ------SVK 78 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------CHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ch------hHH
Confidence 34555555556666666666666666655543 2234555556666666666666666666665532 22 124
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.|..+..++...|++++|...+++...
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555666666666666666666666554
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=7.7e-08 Score=65.75 Aligned_cols=94 Identities=11% Similarity=-0.057 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT 197 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (319)
+..+...+.+.|++++|...|++....+ +.+...+..+..++...|++++|...|++.....+. +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3344444555555555555555555442 334444555555555555555555555555444322 33444445555555
Q ss_pred CCcHHHHHHHHHHHHh
Q 039029 198 NGNIERAFSLLKEMDR 213 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~ 213 (319)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 160
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=1.7e-05 Score=66.01 Aligned_cols=95 Identities=5% Similarity=-0.091 Sum_probs=56.1
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CcChhhHHHHH
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN-LEMAFSFRDEMVKQ-GI-MPTASTYNLLI 87 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~ 87 (319)
.+|...+..+-. |+++.+..+|+..... .|+...|...+....+.+. .+....+|+..+.. |. +.+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 445555555544 6777888888777763 3577777777776666553 34455666666553 32 23455666655
Q ss_pred HHHH----HcCchhHHHHHHHHHhh
Q 039029 88 HELL----MERKMVEADDMLKEMGE 108 (319)
Q Consensus 88 ~~~~----~~~~~~~a~~~~~~~~~ 108 (319)
..+. ..++.+.+.++|++...
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5433 23456667777777665
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=3.2e-07 Score=61.23 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC--CC----hHHHHHH
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PD----SITYNIL 121 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 121 (319)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+..+. ++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444444444444444444444432 113334444444444444444444444444332110 00 1233444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555444
No 162
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.77 E-value=2e-07 Score=60.41 Aligned_cols=99 Identities=12% Similarity=-0.033 Sum_probs=57.7
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--ChhhHHHHH
Q 039029 10 SYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMP--TASTYNLLI 87 (319)
Q Consensus 10 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 87 (319)
...+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 44455566666666666666666666655432 244555666666666666666666666666542 22 345555555
Q ss_pred HHHHHc-CchhHHHHHHHHHhhCC
Q 039029 88 HELLME-RKMVEADDMLKEMGEKG 110 (319)
Q Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~~ 110 (319)
.++... |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 666666 66666666666665543
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=2.2e-07 Score=67.39 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=100.4
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT---------------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQG 75 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (319)
..+..+...+.+.|++++|+..|++......... ..++..+..++...|++++|+..++..++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466778888999999999999999987543211 2688889999999999999999999999874
Q ss_pred CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 039029 76 IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAF-SLHDEMIH 143 (319)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 143 (319)
+.+...+..+..++...|++++|...|++..+..+. +...+..+..++...++.+++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788899999999999999999999999887544 6777888888877777766665 44555544
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=4.9e-07 Score=61.10 Aligned_cols=99 Identities=9% Similarity=-0.131 Sum_probs=59.9
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+..+...+...|++++|...|+..+... +.+...+..+..++...|++++|...+++..+..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555666666666666666666666665553 224555666666666666666666666666655433 5556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 039029 124 GYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++...|++++|...|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666666543
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.5e-06 Score=71.17 Aligned_cols=192 Identities=7% Similarity=-0.064 Sum_probs=94.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcC----------------hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCC-CCCh---
Q 039029 56 CNKGNLEMAFSFRDEMVKQGIMPT----------------ASTYNLLIHELLMERKMVEADDMLKEMGEKGI-VPDS--- 115 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--- 115 (319)
...|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...-. .++.
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 445666666666666655421110 01245556666666666666666655543210 0111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC----CCCc-c
Q 039029 116 -ITYNILINGYCRCGNAKKAFSLHDEMIHK----GI-QPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK----GMLP-D 184 (319)
Q Consensus 116 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 184 (319)
.+.+.+...+...|+++.+..++...... +. ..-..++..+...+...|++++|..+++++... +..+ .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 12222333334455666666666555432 11 112345555666666666666666666655432 1111 2
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRM----KVHPD--EVTYNTLMHGRCRQGKVEEARRLLDQMK 247 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (319)
..++..++..|...|++++|..++++.... ..++. ...+..+...+...|++++|...|.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345555666666666666666666654321 11111 1234445555556666666666555544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=8.4e-07 Score=62.15 Aligned_cols=99 Identities=7% Similarity=-0.097 Sum_probs=64.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHH
Q 039029 44 TAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILIN 123 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (319)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456666666666777777777776666653 225566666666677777777777777776665433 5666667777
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 039029 124 GYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776664
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=3.2e-07 Score=59.40 Aligned_cols=91 Identities=13% Similarity=-0.056 Sum_probs=34.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcC-
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTN- 198 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~- 198 (319)
+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 3333334444444444444433332 223333333334444444444444444443333110 0233333344444444
Q ss_pred CcHHHHHHHHHHHH
Q 039029 199 GNIERAFSLLKEMD 212 (319)
Q Consensus 199 ~~~~~a~~~~~~~~ 212 (319)
|++++|.+.+++..
T Consensus 91 ~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 91 GKEVEAEIAEARAK 104 (112)
T ss_dssp SCSHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHh
Confidence 44444444444443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.2e-06 Score=59.86 Aligned_cols=97 Identities=11% Similarity=-0.071 Sum_probs=47.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----hhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHH
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT----ASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNI 120 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (319)
...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|...+++..+..+. +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 3444445555555555555555555555432 22 334444444455555555555555554443222 3444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+..++...|++++|...+++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=3.9e-07 Score=60.88 Aligned_cols=124 Identities=7% Similarity=0.083 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhh
Q 039029 185 IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLT 264 (319)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
...+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...++++.+....... .......+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-DYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-hHHHHHHH
Confidence 4567778888888999999999999887764 446677888888999999999999999998775321000 00000467
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcch
Q 039029 265 YNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDK 312 (319)
Q Consensus 265 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 312 (319)
+..+...+...|++++|.+.+++.... .|+......+.......++
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999985 4677666666665554443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=4.8e-07 Score=60.40 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCC--CC----hHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIV--PD----SITYNI 120 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 120 (319)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444445555555555555544432 223344444444455555555555555544432111 11 344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+..++...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555566665555555554
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.9e-06 Score=58.91 Aligned_cols=99 Identities=11% Similarity=-0.062 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH
Q 039029 79 TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPD---SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS 155 (319)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+...+..+...+...|++++|...|++..+.... + ...+..+..++...|++++|...+++..... +.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4455566666666677777777777776655322 2 4556666666666677777777666666553 334556666
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhC
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666554
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=5e-07 Score=59.71 Aligned_cols=96 Identities=13% Similarity=-0.076 Sum_probs=59.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..+++.++... .+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3445556666667777777777666664322 555666666666667777777777766666542 24556666666666
Q ss_pred HcCchhHHHHHHHHHhhC
Q 039029 92 MERKMVEADDMLKEMGEK 109 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~ 109 (319)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=7.2e-07 Score=58.94 Aligned_cols=94 Identities=10% Similarity=-0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..+...+.+.|++++|...+++..+..+. +...|..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33444555555566666555555554332 45555555555555666666666665555543 33445555555555556
Q ss_pred ccHHHHHHHHHHHhhC
Q 039029 164 NRMIEADQLFENFLAK 179 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~ 179 (319)
|++++|...++++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666655555543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=3.3e-07 Score=75.98 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=57.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHH
Q 039029 125 YCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERA 204 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (319)
+.+.|++++|.+.+++..+.. +.+...+..+..++.+.|++++|...+++..+.... +...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555542 334555555555555555555555555555554322 345555555555555666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH--HHcCCcHHHHHHHHH
Q 039029 205 FSLLKEMDRMKVHPDEVTYNTLMHG--RCRQGKVEEARRLLD 244 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 244 (319)
...+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66655555432 1122333333333 455556666665555
No 175
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=2.2e-05 Score=65.26 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 039029 152 TYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT-NGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGR 230 (319)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (319)
.|...+....+.++.+.|..+|+.+ .. ...+...|......-.. .++.+.|..+|+...+.- +.+...+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444445555567788888888887 32 12244444432222222 235888888888876642 22344455566666
Q ss_pred HcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 231 CRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 231 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
...|+.+.|..+|+++.+ ....|...+.--...|+.+.+..+++++..
T Consensus 365 ~~~~~~~~aR~l~er~~k------------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK------------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC------------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888621 125677777766777888888888887764
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.59 E-value=1.9e-06 Score=71.12 Aligned_cols=123 Identities=11% Similarity=-0.047 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--------------hhhHHHHHHHHHHcCchhHHHHHHHHHhhCC
Q 039029 45 AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT--------------ASTYNLLIHELLMERKMVEADDMLKEMGEKG 110 (319)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
...+..+...+.+.|++++|+..|++.++...... ...|..+..++.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566677777778888888888877776521111 2344444444555555555555555544433
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+. +...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 34444444445555555555555555444432 22333444444444444444433
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.59 E-value=8.4e-07 Score=61.64 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----hhhHHHHHHHHHHcCchhHHHHHHHHHhhCC----CC-CChH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-PT----ASTYNLLIHELLMERKMVEADDMLKEMGEKG----IV-PDSI 116 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~ 116 (319)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++..+.. .. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554432100 00 1234444444555555555555554443210 00 0123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
.+..+...+...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.58 E-value=4.5e-06 Score=55.55 Aligned_cols=91 Identities=9% Similarity=-0.043 Sum_probs=40.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCC---hHHHHHHHHHH
Q 039029 52 IDGYCNKGNLEMAFSFRDEMVKQGIMPTA---STYNLLIHELLMERKMVEADDMLKEMGEKGIVPD---SITYNILINGY 125 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 125 (319)
...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...+++..+..+. + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33444444555555555444443211 11 23344444444455555555555544443221 2 33344444555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039029 126 CRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~ 144 (319)
...|++++|...|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=2.7e-06 Score=68.00 Aligned_cols=122 Identities=12% Similarity=-0.020 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCC
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQ---------------GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGI 111 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 111 (319)
.+..+...+.+.|++++|+..|++.++. ..+.+..+|..+..++.+.|++++|+..+++..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4666777788888888888888877752 0112344556666666666666666666666666543
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHH
Q 039029 112 VPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170 (319)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
. +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++.
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 55666666666666666666666666666653 334555555555555555554443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.56 E-value=2.9e-07 Score=64.03 Aligned_cols=103 Identities=11% Similarity=-0.054 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCC----CCC-ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcc
Q 039029 187 MFNALIDGHCTNGNIERAFSLLKEMDRMK----VHP-DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPT 261 (319)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 261 (319)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|...+++..+....... ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~ 128 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGE 128 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhH
Confidence 45555566666666666666666553321 000 1335566777778888888888888777653111110 0012
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
..++..+...+...|++++|.+.+++..+.
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 256777888889999999999999887653
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=3.8e-07 Score=75.60 Aligned_cols=124 Identities=11% Similarity=-0.010 Sum_probs=95.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM 92 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (319)
+..+...+.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|++.+++.++.. +.+...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33444566788999999999999888643 367889999999999999999999999999875 3367788889999999
Q ss_pred cCchhHHHHHHHHHhhCCCCCChHHHHHHHHH--HHhcCChHHHHHHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDSITYNILING--YCRCGNAKKAFSLHD 139 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (319)
.|++++|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998876543 44556555555 788899999999887
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.56 E-value=1.3e-06 Score=72.03 Aligned_cols=130 Identities=8% Similarity=-0.051 Sum_probs=105.6
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039029 11 YTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPT--------------AVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI 76 (319)
Q Consensus 11 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 76 (319)
..|..+...+.+.|++++|+..|++..+...... ..+|..+..++.+.|++++|+..+++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3577788899999999999999999987533221 5789999999999999999999999999875
Q ss_pred CcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHH-HHHHHH
Q 039029 77 MPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFS-LHDEMI 142 (319)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 142 (319)
+.+...|..+..++...|++++|...|++..+..+. +...+..+..++.+.++++++.+ .+..|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999987544 66788888888888888877653 444444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=7.1e-06 Score=54.59 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcc---HHHHHHHH
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDS---ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPT---MLTYTSLI 157 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 157 (319)
..+...+...|++++|...|+++.+..+. +. ..+..+..++...|++++|...+++..... +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455566667777777777766654322 22 455566666667777777777776666653 222 44555666
Q ss_pred HHHhhhccHHHHHHHHHHHhhC
Q 039029 158 FVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=3.1e-06 Score=59.05 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--------C---------CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQ--------G---------IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+......+.+.|++++|+..|...+.. . .+.+...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555566666666666666665543 0 0112345666666666777777777777666665
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 110 GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.+. +...|..+..++...|++++|...|++....
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 433 5666666667777777777777777766665
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=3.2e-06 Score=67.60 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCC
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHK---------------GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKG 180 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
..+..+...+.+.|++++|+..|++..+. ..+.+..++..+..++.+.|++++|...++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34666777888888888888888887761 112345677888888888899999999998888764
Q ss_pred CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 039029 181 MLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARR 241 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (319)
.. +...+..+..+|...|++++|...|+++.+.. +.+...+..+...+...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 57788888888888999999999998887764 2355566666666666666665543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=4.8e-07 Score=59.41 Aligned_cols=86 Identities=16% Similarity=0.030 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHH
Q 039029 23 EGRLEEASRMLEQMKENG--LVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEAD 100 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (319)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|+..+++.++..+ -+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766643 122345566666666667777777777766666542 24556666666666666666666
Q ss_pred HHHHHHhhC
Q 039029 101 DMLKEMGEK 109 (319)
Q Consensus 101 ~~~~~~~~~ 109 (319)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=4.9e-05 Score=64.33 Aligned_cols=175 Identities=9% Similarity=-0.024 Sum_probs=131.1
Q ss_pred CChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCc----------hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhc
Q 039029 59 GNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERK----------MVEADDMLKEMGEKGIVPDSITYNILINGYCRC 128 (319)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (319)
...++|++.++.++..++. +..+|+.--.++...++ ++++++.++.+.+..++ +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456778888888877533 55666666666666666 88888999998887766 788888888888888
Q ss_pred C--ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc-cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-------
Q 039029 129 G--NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN-RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN------- 198 (319)
Q Consensus 129 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 198 (319)
+ +++++++.++++.+.+ +-+..+|+.-..++.+.| .++++.+.++++++..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 6699999999998886 457788888777777888 788888888888887654 677777666555442
Q ss_pred -------CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 039029 199 -------GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 199 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 238 (319)
+.++++.+.+.++.... +-+...|..+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998887764 4467788887777777766443
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=3.3e-05 Score=65.38 Aligned_cols=174 Identities=9% Similarity=-0.008 Sum_probs=140.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 039029 24 GRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN----------LEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
...++|++.++.+...++. +..+|+.--.++...++ ++++++.++.+.+...+ +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4456889999999987544 66778877777777777 89999999999998644 778888888888888
Q ss_pred C--chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh-------
Q 039029 94 R--KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCG-NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ------- 163 (319)
Q Consensus 94 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 163 (319)
+ +++++++.++++.+..+. +..+|+.-..++.+.| .++++++.++++.+.. +-+...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 679999999999998766 8889998888888889 8999999999998875 45778888777776653
Q ss_pred -------ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 164 -------NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 164 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
+.++++.+.+.+++...+. +...|..+...+.+.+..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 6788999999998887544 6778887777777766633
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=1.3e-06 Score=57.24 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=44.7
Q ss_pred cCchhHHHHHHHHHhhCC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHH
Q 039029 93 ERKMVEADDMLKEMGEKG--IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEAD 170 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (319)
.|++++|+..|++..+.+ .+.+...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555542 11134455555555666666666666666655553 334555555555566666666666
Q ss_pred HHHHHHhhC
Q 039029 171 QLFENFLAK 179 (319)
Q Consensus 171 ~~~~~~~~~ 179 (319)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=9.1e-06 Score=56.66 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--------C---------CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHK--------G---------IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
.+......+.+.|++++|+..|.+.... . .+.+...+..+..++.+.|++++|...+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555443 0 0112345555566666666666666666666555
Q ss_pred CCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 180 GMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
.+. +...|..+..+|...|++++|...|++..+.
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 322 4555666666666666666666666666554
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=4.4e-06 Score=69.05 Aligned_cols=123 Identities=7% Similarity=-0.038 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHHHHHc-----C--CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC-----CC--CCChHHHHH
Q 039029 55 YCNKGNLEMAFSFRDEMVKQ-----G--IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK-----GI--VPDSITYNI 120 (319)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ 120 (319)
+...|++++|+.++++.++. | .+....+++.|...|...|++++|..++++..+. |. +....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555442 1 1112344555555565666666665555554321 11 112334555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-----C--CCccHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q 039029 121 LINGYCRCGNAKKAFSLHDEMIHK-----G--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
|...|...|++++|..++++.... | .+....+...+..++...+.+.+|+.++..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554431 1 11112233333444444555555555554443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.38 E-value=1.2e-06 Score=72.40 Aligned_cols=130 Identities=12% Similarity=-0.018 Sum_probs=98.6
Q ss_pred HHhhhccHHHHHHHHHHHhhC-----CC-Ccc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----CC-CCC-hhhHH
Q 039029 159 VLSKQNRMIEADQLFENFLAK-----GM-LPD-IVMFNALIDGHCTNGNIERAFSLLKEMDRM-----KV-HPD-EVTYN 224 (319)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 224 (319)
.+...|++++|+.++++.++. |. .|+ ..+++.|...|...|++++|..++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887653 11 222 567899999999999999999999987442 21 122 45788
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHc---CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 225 TLMHGRCRQGKVEEARRLLDQMKRR---GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
.|...|...|++++|..+++++++. -.-|+. +....+...+..++...+.++.|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H---p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH---PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987653 233443 123355677778888999999999999999764
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.37 E-value=2.1e-06 Score=67.87 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=71.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+..+...+.+.|++++|+..|++..... |+... +...++.+++...+ ....|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHH
Confidence 45667777888889999999888877642 33221 11222222222211 1125666777777
Q ss_pred HcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH-HhhhccHHHHH
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV-LSKQNRMIEAD 170 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 170 (319)
+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777765433 66777777777777778887777777776542 2234444444444 22345556666
Q ss_pred HHHHHHhhC
Q 039029 171 QLFENFLAK 179 (319)
Q Consensus 171 ~~~~~~~~~ 179 (319)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777766654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=3.1e-06 Score=66.86 Aligned_cols=130 Identities=10% Similarity=-0.015 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH------------------HHHHHHHHHHhhhccHHHHHHHHHHHh
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM------------------LTYTSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
..+..+...+.+.|++++|...|++..... |+. ..+..+..++.+.|++++|...+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555566666677777777776666542 222 267788888889999999999999888
Q ss_pred hCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCcHHHHHHHHHHHHHc
Q 039029 178 AKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHG-RCRQGKVEEARRLLDQMKRR 249 (319)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 249 (319)
+.... +...+..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..+.+...|.++...
T Consensus 258 ~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 76432 67788888889999999999999999887653 2234444444444 23455677778888887664
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.6e-06 Score=53.39 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC---
Q 039029 220 EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPD--- 296 (319)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 296 (319)
...+..+...+...|++++|...|+++++.. |+ +...|..+..++...|++++|++.+++.+.. .|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 73 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccH
Confidence 3445556666666666666666666666542 22 2245666666666666666666666666653 333
Q ss_pred ----hHHHHHHHHHhhhcchhhhhc
Q 039029 297 ----DNTYFSLIEGIASVDKAAESS 317 (319)
Q Consensus 297 ----~~~~~~l~~~~~~~g~~~~A~ 317 (319)
...+..+..++...|+.++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 344555555566666655554
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.33 E-value=1.6e-05 Score=54.35 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c-----C-----hhhHHHHHHHHHHcCchhHHHHHHHHHhhC------
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM-P-----T-----ASTYNLLIHELLMERKMVEADDMLKEMGEK------ 109 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 109 (319)
.+......+...|++++|+..|++.++.... | + ...|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555556666666666666666654211 0 0 114444444444444444444444444432
Q ss_pred -CCCCChHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 110 -GIVPDSITY----NILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 110 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+. +...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 33344 4444555555555555555554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.32 E-value=4.5e-05 Score=51.48 Aligned_cols=110 Identities=14% Similarity=-0.016 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhc----CCcHHHHH
Q 039029 130 NAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCT----NGNIERAF 205 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 205 (319)
++++|++.|++..+.| .+... +...|...+.++.|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 5555555556666666666666653 44555556666655 56777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHHHHHHHHHHHHcC
Q 039029 206 SLLKEMDRMKVHPDEVTYNTLMHGRCR----QGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 250 (319)
..|++..+.+ +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766653 45556666666666 667777777777776654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=4.2e-05 Score=51.63 Aligned_cols=113 Identities=10% Similarity=-0.060 Sum_probs=95.1
Q ss_pred hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCcHHH
Q 039029 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCR----QGKVEE 238 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 238 (319)
.+++++|.+.|++..+.+.. +.. +...|...+..++|...|++..+.+ +...+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999988733 333 7777888888999999999998864 67788888888988 899999
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh----cCchhHHHHHHHHHHhCCC
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK----NQEGDLAEELLREMVSKGI 293 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 293 (319)
|.++|++..+.|. ...+..|...|.. .+++++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g~----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLND----------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCC----------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998753 2677888889988 8999999999999998863
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=2.6e-05 Score=53.35 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCC------C-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 039029 82 TYNLLIHELLMERKMVEADDMLKEMGEKGIVP------D-----SITYNILINGYCRCGNAKKAFSLHDEMIHK------ 144 (319)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 144 (319)
.+......+.+.|++++|+..|++..+..+.. + ...|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445556667777777777777776543221 1 125555556666666666666666555543
Q ss_pred -CCCccHHHH----HHHHHHHhhhccHHHHHHHHHHHh
Q 039029 145 -GIQPTMLTY----TSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 145 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+ +.+...| .....++...|++++|+..|++.+
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1223344 444444444555555555544443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.8e-06 Score=55.77 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC------hhh
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPT------AST 82 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 82 (319)
+...+..+...+.+.|++++|++.|++..+... .+...+..+..++...|++++|++.+++.++.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 345566666777777777777777777766532 25566677777777777777777777777665321 2 333
Q ss_pred HHHHHHHHHHcCchhHHHHH
Q 039029 83 YNLLIHELLMERKMVEADDM 102 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~ 102 (319)
+..+..++...|+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHhHhhhHhH
Confidence 44444455555554444433
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=5.5e-05 Score=49.12 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 99 ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
+...|++..+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...|++...
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443322 44445555555555555555555555555442 23344444455555555555555555554443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=6.3e-05 Score=46.26 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
.+..+..++...|++++|...+++..+
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444444444444444333
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.05 E-value=7.3e-05 Score=45.99 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHH
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGY 125 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (319)
..+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555442 223444555555555555555555555555544322 344444444333
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=0.00011 Score=47.67 Aligned_cols=78 Identities=13% Similarity=-0.014 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 64 AFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
++..|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...|..+..++...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444432 223444445555555555555555555555444322 344555555555555555555555555544
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=3.3e-05 Score=52.71 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch----------hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhc-
Q 039029 60 NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM----------VEADDMLKEMGEKGIVPDSITYNILINGYCRC- 128 (319)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 128 (319)
.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+..+. +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence 3444444444444443 12344444444444444332 3555555555544333 444455555555444
Q ss_pred ----------CChHHHHHHHHHHHHc
Q 039029 129 ----------GNAKKAFSLHDEMIHK 144 (319)
Q Consensus 129 ----------~~~~~a~~~~~~~~~~ 144 (319)
|++++|++.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 3566666666666554
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=4.2e-05 Score=48.34 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCCh
Q 039029 219 DEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKG-ITPDD 297 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 297 (319)
+...+..+...|...|++++|...|+++++.. |+. ...|..+..+|...|++++|.+.+++.++.. -.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 34445555555566666666666666655532 222 1455555566666666666666665555431 12344
Q ss_pred HHHHHHHHHhhhcc
Q 039029 298 NTYFSLIEGIASVD 311 (319)
Q Consensus 298 ~~~~~l~~~~~~~g 311 (319)
.....+...+...+
T Consensus 78 ~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 78 KDLSELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc
Confidence 44444444444433
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.99 E-value=6.6e-05 Score=51.24 Aligned_cols=87 Identities=7% Similarity=-0.085 Sum_probs=59.6
Q ss_pred HHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 91 LMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA----------KKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
.+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++..+.+ +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3456678888888888776554 777777777777777654 47777777777764 44566777777777
Q ss_pred hhhc-----------cHHHHHHHHHHHhhC
Q 039029 161 SKQN-----------RMIEADQLFENFLAK 179 (319)
Q Consensus 161 ~~~~-----------~~~~a~~~~~~~~~~ 179 (319)
...| ++++|.+.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6654 566666666666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=0.00014 Score=45.91 Aligned_cols=61 Identities=23% Similarity=0.088 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
..+..+..++...|++++|...|++..+..+. +...|..+..+|...|++++|...+++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444443322 33444444444444555555544444443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.74 E-value=0.0023 Score=56.90 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=23.9
Q ss_pred hhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 161 SKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555553321 24455555666666666666666655554
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.71 E-value=5.5e-05 Score=61.53 Aligned_cols=91 Identities=7% Similarity=-0.090 Sum_probs=70.7
Q ss_pred cCCcHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHc---CCCCCCcccCcchhhHH
Q 039029 197 TNGNIERAFSLLKEMDRM---KVHPD----EVTYNTLMHGRCRQGKVEEARRLLDQMKRR---GIKPDHISFNPTRLTYN 266 (319)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 266 (319)
..|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|..+++++++. -..|+. +....+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H---p~~a~~l~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS---LNVASMWL 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC---HHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC---hHHHHHHH
Confidence 467899999999887542 12222 357889999999999999999999998653 223333 23447899
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHh
Q 039029 267 ALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
.|...|...|++++|..++++.++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999998875
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.0043 Score=48.73 Aligned_cols=64 Identities=9% Similarity=-0.100 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
.+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+.+...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444444444455555555555555543 3444444445555555555555555555544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.61 E-value=0.00018 Score=58.54 Aligned_cols=96 Identities=11% Similarity=-0.047 Sum_probs=74.4
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCC---CCCC----hhhHHHHHHHHHcCCcHHHHHHHHHHHHHc---CCCCCCcccCcc
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMK---VHPD----EVTYNTLMHGRCRQGKVEEARRLLDQMKRR---GIKPDHISFNPT 261 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~ 261 (319)
+..+...|++++|..++++..+.. +.|+ ..+++.++.+|...|++++|+.++++++.. -..|+. +..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H---p~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH---PVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC---HHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC---hHH
Confidence 445667899999999999886532 1222 347888999999999999999999987653 222333 234
Q ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 262 RLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 262 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
..+++.|...|...|++++|..++++..+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 47889999999999999999999998865
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.50 E-value=0.0012 Score=53.81 Aligned_cols=61 Identities=8% Similarity=0.019 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCc-cHHHHHHHHHHHhhhccHHHHHHHHHHHh
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHK-----G-IQP-TMLTYTSLIFVLSKQNRMIEADQLFENFL 177 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (319)
+++.+..+|...|++++|+.++++.... | ..| ...+++.+...|...|++++|..+++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444444555555555555544444321 1 011 12344444455555555555555444443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00077 Score=42.10 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSI-TYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+...|++++|...+++..+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444433221 333 4444444444444444444444444443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.47 E-value=0.00056 Score=55.64 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHHhhC-----CC-Ccc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHH
Q 039029 164 NRMIEADQLFENFLAK-----GM-LPD-IVMFNALIDGHCTNGNIERAFSLLKEMDRM-----KV-HPD-EVTYNTLMHG 229 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~ 229 (319)
|++++|..++++.++. |. .|+ ..+++.+...|...|++++|..++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666655442 11 122 356777777888888888888777776432 21 122 3467778888
Q ss_pred HHcCCcHHHHHHHHHHHHH
Q 039029 230 RCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~ 248 (319)
|..+|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888877654
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.36 E-value=0.034 Score=43.75 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCCCHHhHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHH---cC-----chhHHHHHHHHHh
Q 039029 41 LVPTAVTYNTLIDGYCN--KG---NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLM---ER-----KMVEADDMLKEMG 107 (319)
Q Consensus 41 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~ 107 (319)
.+.+...|...+++... .+ +..+|..+|++.++..+. ....+..+..++.. .+ ........++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34567778777765443 33 357899999999987422 34555544444431 11 1111111222211
Q ss_pred h-CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHH
Q 039029 108 E-KGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV 186 (319)
Q Consensus 108 ~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (319)
. ...+.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....+ |...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcC
Confidence 1 1224578888888877888899999999999999985 677788888889999999999999999998874 4555
Q ss_pred HHH
Q 039029 187 MFN 189 (319)
Q Consensus 187 ~~~ 189 (319)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.33 E-value=0.0016 Score=40.55 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=37.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhhhccHHHHHHHHHHHhhCC
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTML-TYTSLIFVLSKQNRMIEADQLFENFLAKG 180 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (319)
...+...|++++|...+++..+.. +.+.. .+..+..++...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445566677777777777776653 33455 66666666777777777777777666653
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=0.0031 Score=38.94 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHHcCCc---HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 039029 219 DEVTYNTLMHGRCRQGK---VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK 291 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 291 (319)
+...+..+..++...++ .++|..++++.++. .|+. ......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYN------EAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444445544433332 45555555555553 2222 244555555555566666666666665554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.019 Score=39.87 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=89.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcH
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNI 201 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (319)
.......|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 45567789999999887665 3678899999999999999999999987543 33445556667887
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHH
Q 039029 202 ERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLA 281 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 281 (319)
++...+-+.....| -++.-...+...|+++++.++|.+.-+ |..........|-.+.|
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----------------~~eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----------------LPLAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----------------hHHHHHHHHHcCcHHHH
Confidence 77666665555433 245566667788999999998865321 22222223346667778
Q ss_pred HHHHHHH
Q 039029 282 EELLREM 288 (319)
Q Consensus 282 ~~~~~~~ 288 (319)
.++.+++
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8877665
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.23 E-value=0.031 Score=49.68 Aligned_cols=76 Identities=13% Similarity=0.008 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 84 NLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
..++..+.+.|..+.|.++.+. . ..-.......|+++.|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666654421 1 11123345567777777664332 3556777777777777
Q ss_pred ccHHHHHHHHHHHh
Q 039029 164 NRMIEADQLFENFL 177 (319)
Q Consensus 164 ~~~~~a~~~~~~~~ 177 (319)
++++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777777653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.08 E-value=0.011 Score=36.42 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 26 LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (319)
.++|..++++..+.... ++.....+...+.+.|++++|+..|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555544322 4444444555555555555555555555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0041 Score=42.03 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCC---cHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCcHHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNG---NIERAFSLLKEMDRMKVHP--DEVTYNTLMHGRCRQGKVEEA 239 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 239 (319)
....+.+.|.+....+. ++..+...+..++++++ +.+++..+|+.+.+.+ .| ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555665555444 46666666777777776 5567777777776653 23 244555566777788888888
Q ss_pred HHHHHHHHHc
Q 039029 240 RRLLDQMKRR 249 (319)
Q Consensus 240 ~~~~~~~~~~ 249 (319)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888887774
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.04 E-value=0.012 Score=37.13 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 115 SITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
...+..+..++.+.|+++.|...++++...
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344444555555555555555555555443
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.99 E-value=0.012 Score=37.07 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhC
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQG------IMPTASTYNLLIHELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
+..+...+...+++..|..+|+...+.. ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344444444555555555544444320 0122334445555555555555555555555443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.014 Score=39.41 Aligned_cols=67 Identities=18% Similarity=0.096 Sum_probs=31.5
Q ss_pred cChhhHHHHHHHHHHcC---chhHHHHHHHHHhhCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 78 PTASTYNLLIHELLMER---KMVEADDMLKEMGEKG-IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
++..+...+..++++.+ +.++++.+++++.+.. +.-+...+-.+.-++.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444444444555544 3445555555554432 1012333344444455555555555555555554
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.74 E-value=0.032 Score=37.35 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=62.3
Q ss_pred CHHhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCcChh-hHHHHHH------HHHHcCchhHHHHHHHHHhhCC
Q 039029 44 TAVTYNTLIDGYCNKGNL------EMAFSFRDEMVKQGIMPTAS-TYNLLIH------ELLMERKMVEADDMLKEMGEKG 110 (319)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 110 (319)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+...+. .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444454455444444555 5555666655553 233221 1111111 1123467777888887776543
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 039029 111 IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFV 159 (319)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (319)
-.- ...|......-.+.|+...|.+++......+.. +...+...+.-
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 332 666666667777788888888888887776643 34444444443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.029 Score=42.38 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-CcHH
Q 039029 165 RMIEADQLFENFLAKGML-PDIVMFNALIDGHCTN-----GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ-GKVE 237 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 237 (319)
....|...+++.++.... .+...|..+...|... |+.++|.+.|++..+.+..-+..++..+...++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 356777788888776322 1256788888888884 99999999999998865222477778888888874 9999
Q ss_pred HHHHHHHHHHHcCCC
Q 039029 238 EARRLLDQMKRRGIK 252 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~ 252 (319)
++.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999986544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.67 E-value=0.071 Score=35.72 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=47.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALID 193 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (319)
..++.++|.++|+.+.+.. +--...|......-.++|++..|.+++...+..+..| ...+...+.
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3478899999999887763 2236666666666778899999999999998887664 444544444
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.67 E-value=2.7e-06 Score=68.19 Aligned_cols=252 Identities=14% Similarity=0.122 Sum_probs=157.7
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 9 DSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 9 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
.+..|..|..+..+.++..+|++-|- +. -|+..|..++..+.+.|.+++..+++...++.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 35567778888888888888877662 21 355678888999999999999888887776653 24445567888
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------------------CCCc
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK--------------------GIQP 148 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~ 148 (319)
+|++.++..+..+++. .||......+..-|...|.++.|.-+|..+... .-..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8988888776544332 245555666677777777777766666544211 0123
Q ss_pred cHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 149 TMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
++.||..+-.+|...+.+.-|.-.--.++-. +| -...++..|...|.+++.+.+++.-.... +.....|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 5678888888888877776654443333322 11 12346667778888888888887765432 456677888877
Q ss_pred HHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHH
Q 039029 229 GRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAE 282 (319)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 282 (319)
.|++- ++++..+.++..-..---|.....--....|..++-.|.+-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77765 455555544432221111111111123356777777777777777665
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.46 E-value=0.092 Score=34.46 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=25.0
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMK 215 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (319)
...+..+...|..++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333444444444444444444322 122334444444444444444444444444444433
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.44 E-value=0.062 Score=40.65 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhh-----hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcC-CcH
Q 039029 131 AKKAFSLHDEMIHKGIQPT---MLTYTSLIFVLSK-----QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTN-GNI 201 (319)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 201 (319)
...|...+++..+. .|+ ...+..+...|.+ .|+.+.|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777778888776 344 5688889988988 499999999999999976543467777788888885 999
Q ss_pred HHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 202 ERAFSLLKEMDRMKVH--PDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 202 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
+.+.+.+++....... |+....+.+ .-++|..++.++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 9999999999987655 554433332 234555555544
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.33 E-value=0.11 Score=34.07 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=90.2
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHH
Q 039029 20 MCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEA 99 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 99 (319)
+.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+. .|. ..+|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34567888888888877764 35555666666666666666666666665432 121 123333333
Q ss_pred HHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 100 DDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
...+-.+- .+.......+......|.-++..+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33333221 24455666677778888888888888875443 3677788888888888888888888888888777
Q ss_pred CCC
Q 039029 180 GML 182 (319)
Q Consensus 180 ~~~ 182 (319)
|.+
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 754
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.16 Score=35.31 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=20.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHH
Q 039029 56 CNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEM 106 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (319)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3444444444444332 13344444444444444444444444443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.17 Score=44.12 Aligned_cols=128 Identities=16% Similarity=0.060 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhcc-HHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc-HHHHHHHHHHHHhC------CCCCCh----
Q 039029 153 YTSLIFVLSKQNR-MIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN-IERAFSLLKEMDRM------KVHPDE---- 220 (319)
Q Consensus 153 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~---- 220 (319)
...++..+...++ .+.|..+++++......-+......++......++ --+|..++.+..+. ..++..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555555 46677778777765322222222233333333322 22344444333210 111111
Q ss_pred -------hhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHH
Q 039029 221 -------VTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREM 288 (319)
Q Consensus 221 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 288 (319)
.....-...+...|+++.|+++.++... ..|+.+ .+|..|..+|...|+++.|+-.++-+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSF------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhh------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222224556778999999999999877 456665 78999999999999999999888765
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.17 E-value=0.082 Score=34.34 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCcHHH
Q 039029 164 NRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIER---AFSLLKEMDRMKVHP--DEVTYNTLMHGRCRQGKVEE 238 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 238 (319)
.....+.+.|......+. ++..+-..+..++.++.+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 334444555554444333 455555556666666665444 667777766543 12 23344456667777788888
Q ss_pred HHHHHHHHHHc
Q 039029 239 ARRLLDQMKRR 249 (319)
Q Consensus 239 a~~~~~~~~~~ 249 (319)
|.++++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777774
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.91 E-value=0.081 Score=34.38 Aligned_cols=81 Identities=17% Similarity=0.011 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhH---HHHHHHHHhhCCCC-CChHHHHHHHHHHHhcCChHHHHHHH
Q 039029 63 MAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVE---ADDMLKEMGEKGIV-PDSITYNILINGYCRCGNAKKAFSLH 138 (319)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 138 (319)
.+.+-|......|. ++..+-..+..++.+...... ++.+++.+...+.+ -.....-.|.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444433332 444444455555555544333 55555555544311 12233334445556666666666666
Q ss_pred HHHHHc
Q 039029 139 DEMIHK 144 (319)
Q Consensus 139 ~~~~~~ 144 (319)
+.+.+.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.087 Score=45.90 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=81.1
Q ss_pred HHHHHHHhccCC-hHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCcC-h----
Q 039029 14 GSFVSGMCKEGR-LEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGN-LEMAFSFRDEMVKQ------GIMPT-A---- 80 (319)
Q Consensus 14 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~-~---- 80 (319)
..++..+...++ .+.|+.+|+.+.......+......++..+...++ --+|.+++.+.++. ..++. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 58899999999886422222222233333333332 23455555554421 11111 1
Q ss_pred ------hhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 81 ------STYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 81 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
.....-...+...|+++-|+++-++.....+. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244567789999999999999887443 78899999999999999999999998873
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.87 E-value=2.1 Score=38.51 Aligned_cols=257 Identities=13% Similarity=0.029 Sum_probs=128.7
Q ss_pred HhccCChHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CcChhhHHHHHHHH
Q 039029 20 MCKEGRLEEASRMLEQMKENGLVPTA--VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGI-------MPTASTYNLLIHEL 90 (319)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 90 (319)
....|+.++++.++......+...+. ..-..+.-+....|..+++..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566667776666554432101122 2223333445566666667777766655321 01111112222223
Q ss_pred HHcCc-hhHHHHHHHHHhhCCCCCChHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHH--HHHhhhcc
Q 039029 91 LMERK-MVEADDMLKEMGEKGIVPDSITYN--ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLI--FVLSKQNR 165 (319)
Q Consensus 91 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~ 165 (319)
+-.|. -+++.+.+..+....- +...... .+...+...|+.+.+..++..+.+.. +..+...+. -++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 32332 2355555555554311 1111112 23344556677777777777766542 223333333 33446678
Q ss_pred HHHHHHHHHHHhhCCCCccHHHH--HHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 039029 166 MIEADQLFENFLAKGMLPDIVMF--NALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLL 243 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (319)
.+.+..+.+.+... ..|....- .++.-+|+..|+......++..+.+.. ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 78888787777654 22222221 234456778888887777888877632 223333333334444566666666666
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCch-hHHHHHHHHHHh
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVS 290 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 290 (319)
..+.+.+ .|.+..-..+.-+....|.. .+|.+++..+..
T Consensus 618 ~~L~~~~--------d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH--------NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS--------CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC--------CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6554432 12223333344444445554 567777777764
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.66 E-value=0.27 Score=39.41 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH-----hCCCCCChhhH
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD-----RMKVHPDEVTY 223 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 223 (319)
...++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+. +.|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344555566677777766666665543 2356666777777777777777777666652 34666665543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.62 E-value=0.25 Score=39.66 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhh-----CCCCccHHHHHH
Q 039029 117 TYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLA-----KGMLPDIVMFNA 190 (319)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 190 (319)
....++..+...|++.++...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556777788888888888888887764 66778888888888888888888888887654 378887765443
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.21 E-value=0.54 Score=28.95 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
+.-+..+-++.+......|++.+..+.+++|.+.+++.-|.++|+.++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566666777777777777777777777777777777777777765432 223344555543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=2.5 Score=34.64 Aligned_cols=187 Identities=10% Similarity=0.058 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHH----HHcC
Q 039029 24 GRLEEASRMLEQMKEN-----GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHEL----LMER 94 (319)
Q Consensus 24 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 94 (319)
|+++.|++.+-.+.+. +..........++..|...++++...+.+.-+.+.... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6677777776655532 23334556777778888888888777766655443211 111222222222 1122
Q ss_pred chhHH--HHHHHHHhh---CCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcc---HHHHHHHHHHHh
Q 039029 95 KMVEA--DDMLKEMGE---KGIVP---DSITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPT---MLTYTSLIFVLS 161 (319)
Q Consensus 95 ~~~~a--~~~~~~~~~---~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 161 (319)
..+.. ..+.+.+.. ..+.. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 21111 111111110 00111 0112234556666666666666666665432 11111 134444455566
Q ss_pred hhccHHHHHHHHHHHhh----CCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 162 KQNRMIEADQLFENFLA----KGMLPD--IVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666666666555431 111222 123334444445555555555544444
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.66 E-value=2.6 Score=39.27 Aligned_cols=62 Identities=6% Similarity=-0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccH----HHHHHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTM----LTYTSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
|..++..+-+.+.++.+.+.-....+...+.+. ..|..+.+.+...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 444555555555555555555444433111111 13445555555555555555555444443
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.54 E-value=0.97 Score=29.58 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=43.1
Q ss_pred CCccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 181 MLPDIVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
..|+..+--.+..++.++.+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 34455555555555555543 345677777766544111234455566777777788888877777776 34443
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.23 E-value=1.1 Score=29.31 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMH 228 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (319)
+.-+..+-++.+......|++.+..+.+++|.+.+|+.-|.++|+-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 334556666677777777777778888888888888888888777765532 333445655554
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.06 E-value=1.2 Score=29.18 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 98 EADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (319)
+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444333211233333444444555555555555554444
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.66 E-value=1 Score=30.77 Aligned_cols=68 Identities=7% Similarity=-0.054 Sum_probs=38.8
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHcC-----------------CCCCCcccCcchhhHHHHHHHHHhcCchhHHHHH
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRG-----------------IKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL 284 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 284 (319)
++..+..++...|++..|...|+++++.. ..|+.....++...--.+..+|.+.|++++|+.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 34445566666666666666666643210 0111111112234445588899999999999998
Q ss_pred HHHHH
Q 039029 285 LREMV 289 (319)
Q Consensus 285 ~~~~~ 289 (319)
++.+-
T Consensus 145 Le~Ip 149 (167)
T 3ffl_A 145 LDGIP 149 (167)
T ss_dssp HHTSC
T ss_pred HhcCC
Confidence 87653
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.65 E-value=1.1 Score=30.61 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=67.2
Q ss_pred CCCCCCcc--cHHHHHHHHhccCChHHHHHHHHHHHhCC-CCCCH-------HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039029 4 RGVQPDSY--TYGSFVSGMCKEGRLEEASRMLEQMKENG-LVPTA-------VTYNTLIDGYCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 4 ~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (319)
.|+-|-.. .+-.-+..+...|.++.|+-+.+.+.... ..|++ .++..+..++...+++.+|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555433 34556778889999999998888765431 12221 2566778889999999999999999754
Q ss_pred cC--CCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 74 QG--IMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 74 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.. +.-+......+. . ...... ......+...--.+..+|.+.+++++|+.+++.+..+
T Consensus 92 ~~k~l~k~~s~~~~~~---~-~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---N-SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCcccccc---c-cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 31 111111111110 0 000000 0011223444445667777777777777777665443
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.43 E-value=0.0063 Score=49.45 Aligned_cols=187 Identities=14% Similarity=0.079 Sum_probs=131.0
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHH
Q 039029 8 PDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLI 87 (319)
Q Consensus 8 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (319)
-|+..|..+|..+.+.|.+++-+..+...++.. .++.+=+.++-+|++.++..+..+++. .|+..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 356778899999999999999999887766542 355667789999999998766544432 35666666777
Q ss_pred HHHHHcCchhHHHHHHHHHhhCC--------------------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039029 88 HELLMERKMVEADDMLKEMGEKG--------------------IVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
.-|...|.++.|.-+|..+.... -..++.||..+-.+|...+++.-|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 77777777777776665542210 1236788999999999999988776544443321
Q ss_pred ccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 039029 148 PTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKE 210 (319)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (319)
..-...++..|...|.+++.+.+++.-.... ......|+.|.-.|++- ++++..+.++.
T Consensus 229 --adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 --ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp --SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1223445677888999999999999877542 23678888888888776 44555544443
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.76 E-value=8.4 Score=35.97 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=110.5
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------Hc
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMI--------------------HK 144 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------~~ 144 (319)
.++..+...+..+.+.++..-.. .++..--.+..++...|++++|...|.+.. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 44555566666666555443322 133333445666677777777777765431 11
Q ss_pred C--CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCC
Q 039029 145 G--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD----IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHP 218 (319)
Q Consensus 145 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (319)
. ...-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+.+...|++++|...+..+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 122345678888888889999888888776665422212 23678888999999999999988888766543
Q ss_pred ChhhHHHHHHHHHcCCc------------HHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHH-H
Q 039029 219 DEVTYNTLMHGRCRQGK------------VEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEEL-L 285 (319)
Q Consensus 219 ~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~ 285 (319)
-......|+...+..|. .++..+++..-.+....+.. .+.-|..|=.-+...|++.+|-.+ |
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~-----~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVES-----QPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC-----STHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcccc-----CCCHHHHhHhhhhccCChHHHHHHHH
Confidence 34455666665555544 44444444332221101111 012345555555677888776554 5
Q ss_pred HHHH
Q 039029 286 REMV 289 (319)
Q Consensus 286 ~~~~ 289 (319)
+.+.
T Consensus 1045 e~~~ 1048 (1139)
T 4fhn_B 1045 EKLS 1048 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.20 E-value=3.9 Score=33.30 Aligned_cols=99 Identities=11% Similarity=-0.125 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHcCchhHHHHHHHHHhhC--CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCccHHH--H
Q 039029 81 STYNLLIHELLMERKMVEADDMLKEMGEK--GIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK---GIQPTMLT--Y 153 (319)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 153 (319)
.+...+...|.+.|+.+.|.+.+.++... +...-...+-.+++.+...+++..+...+.+.... +-.++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36678889999999999999999999864 23334567778889999999999999999888653 22222211 1
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhhC
Q 039029 154 TSLIFVLSKQNRMIEADQLFENFLAK 179 (319)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (319)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122344678888888877766543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.52 E-value=6.3 Score=32.26 Aligned_cols=171 Identities=14% Similarity=0.134 Sum_probs=97.1
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHH----HhcCChHHH--HHHHHHHHHc--C-CC
Q 039029 7 QPDSYTYGSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGY----CNKGNLEMA--FSFRDEMVKQ--G-IM 77 (319)
Q Consensus 7 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a--~~~~~~~~~~--~-~~ 77 (319)
.-.......++..|...|+|+...+.+..+.+.-.. .......+++.+ ......+.. ..+.+..... | +-
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 334555677888888888888887777766543222 122223333332 223332221 1111111110 1 11
Q ss_pred cC---hhhHHHHHHHHHHcCchhHHHHHHHHHhhC--CCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 039029 78 PT---ASTYNLLIHELLMERKMVEADDMLKEMGEK--GIVPD---SITYNILINGYCRCGNAKKAFSLHDEMIHK----G 145 (319)
Q Consensus 78 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 145 (319)
.. ......|...+...|++.+|.+++..+... +.... ...+...++.|...+++.+|..++.++... .
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 10 112245677788889999999988888643 22111 345666678888889999998888876432 1
Q ss_pred CCcc--HHHHHHHHHHHhhhccHHHHHHHHHHHhh
Q 039029 146 IQPT--MLTYTSLIFVLSKQNRMIEADQLFENFLA 178 (319)
Q Consensus 146 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (319)
.+|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1222 13455666667777888887777766654
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.37 E-value=2.7 Score=27.88 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 182 LPDIVMFNALIDGHCTNGN---IERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4566655556666666654 446777777776643222334445566777888888888888888887 34543
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.15 E-value=5.1 Score=32.61 Aligned_cols=98 Identities=12% Similarity=-0.052 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhC---CCCccHHH--H
Q 039029 116 ITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAK---GMLPDIVM--F 188 (319)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 188 (319)
.+...+...|.+.|++++|.+.+.++... +..--...+..+++.+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36678899999999999999999999875 22334567888889999999999999999887543 33333321 1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHh
Q 039029 189 NALIDGHCTNGNIERAFSLLKEMDR 213 (319)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (319)
..-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334567889988888877644
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.87 E-value=2.3 Score=26.25 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=48.3
Q ss_pred HHHhcCC-cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC
Q 039029 193 DGHCTNG-NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG 250 (319)
Q Consensus 193 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (319)
..+-+.. |.-+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+.++.+.
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3333444 556677888888888999999999999999999999999999999988763
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.81 E-value=3.1 Score=27.64 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=29.0
Q ss_pred cChhhHHHHHHHHHHcCc---hhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 78 PTASTYNLLIHELLMERK---MVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
|+..+--.+..++.+... ..+++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344443344444444332 2334444444444332222233333444555555555555555555543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.67 E-value=5.1 Score=29.97 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cChhhHHHHHHHHHHcC
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIM--PTASTYNLLIHELLMER 94 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 94 (319)
+..+.+.|++++++.....-.+..+ .|...-..+++.+|-.|++++|.+-++...+.... |....|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 3456788999999988888777643 37777888999999999999999888888776321 122233333332
Q ss_pred chhHHHHHHHHHhhCCCC-----CChHHHHHHHHHH--HhcCChHHHHHHHHHHHHc
Q 039029 95 KMVEADDMLKEMGEKGIV-----PDSITYNILINGY--CRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 144 (319)
+..=.++..-+-. ....-...++.+. ...|+.++|..+-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2222222222111 1222333444443 3458888888888877664
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.43 E-value=6.1 Score=28.07 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCC
Q 039029 198 NGNIERAFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 254 (319)
.+......++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446678888888877665433 44677788888888888888888888888776653
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.22 E-value=5.4 Score=26.21 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHH
Q 039029 200 NIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQ 270 (319)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (319)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-++.+--. .. ..|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~-------~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HK-------EIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CT-------THHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-ch-------hhHHHHHH
Confidence 44556777788888889999999999999999999999999999998876322 22 45766664
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.14 E-value=9.5 Score=28.36 Aligned_cols=209 Identities=11% Similarity=0.025 Sum_probs=90.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh--HHHHHH
Q 039029 14 GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAV---TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST--YNLLIH 88 (319)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~ 88 (319)
++.+...++.|+.+....+++ .|..++.. .-...+...+..|+.+-+. .+.+.|..++... -...+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHH
Confidence 345666778888876665554 34333221 1123444556677765444 4444554433211 112233
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH------------HHH
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSIT--YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML------------TYT 154 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~ 154 (319)
..+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.. .-.
T Consensus 78 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 78 LAAIAGSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHHTCHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHHcCCHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCC
Confidence 44455665443 44444454433211 11223344556665443 4444444333211 001
Q ss_pred HHHHHHhhhccHHHHHHHHHHHhhCCCCc---cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhh--HHHHHHH
Q 039029 155 SLIFVLSKQNRMIEADQLFENFLAKGMLP---DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVT--YNTLMHG 229 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 229 (319)
..+......|+.+-+..+++.. +..+ +....+.+.. .+..++.....++++.+.+.|..++... -...+..
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 2233334556665554444321 2222 1111222222 2334444444555556666655444321 1123334
Q ss_pred HHcCCcHHHHHHH
Q 039029 230 RCRQGKVEEARRL 242 (319)
Q Consensus 230 ~~~~g~~~~a~~~ 242 (319)
.+..|+.+-+..+
T Consensus 226 A~~~~~~~~v~~L 238 (285)
T 1wdy_A 226 AVEKKHLGLVQRL 238 (285)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 4456666544333
No 261
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.80 E-value=14 Score=29.67 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=90.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCc---ChhhHHHHHHHHHHcC-chhHHHHHHHHHhhCCCCCChHHH--
Q 039029 46 VTYNTLIDGYCNKGNLEMAFSFRDEMVKQ-GIMP---TASTYNLLIHELLMER-KMVEADDMLKEMGEKGIVPDSITY-- 118 (319)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 118 (319)
.....+...|.+.|+.++..+++.....- +..+ .......++..+.... ..+.-.++..+..+..-. +-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45667888888889988888888776532 1011 2234455666665532 233333333333321100 11222
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHHc--CCCcc---HHHHHHHHHHHhhhccHHHHHHHHHHHhhC--CCCccHHH
Q 039029 119 ----NILINGYCRCGNAKKAFSLHDEMIHK--GIQPT---MLTYTSLIFVLSKQNRMIEADQLFENFLAK--GMLPDIVM 187 (319)
Q Consensus 119 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 187 (319)
..++..|...|++.+|.+++..+.+. ..... ..++..-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24677788888888888888777664 11111 134455556677777888877777766543 12123322
Q ss_pred HHH----HHHHHh-cCCcHHHHHHHHHHH
Q 039029 188 FNA----LIDGHC-TNGNIERAFSLLKEM 211 (319)
Q Consensus 188 ~~~----l~~~~~-~~~~~~~a~~~~~~~ 211 (319)
... -...+. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 221 123344 667777777766654
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.66 E-value=26 Score=31.88 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=123.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCC-------CCCHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcChhhHH--
Q 039029 15 SFVSGMCKEGRLEEASRMLEQMKENGL-------VPTAVTYNTLIDGYCNKGN-LEMAFSFRDEMVKQGIMPTASTYN-- 84 (319)
Q Consensus 15 ~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~-- 84 (319)
.+.-+....|..+++..++.......- .+....-..+.-+.+-.|. -+++.+.+..++.... +......
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 344455666666678877776554311 0111112223333333343 3456666666665421 1111122
Q ss_pred HHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHH--HHHHHHHhh
Q 039029 85 LLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTY--TSLIFVLSK 162 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 162 (319)
.+...+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .|....- ..+.-+|+.
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence 22333445677777777777766542 1122222333344557799999999988887642 2333222 233456778
Q ss_pred hccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH-HHHHH
Q 039029 163 QNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKV-EEARR 241 (319)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~ 241 (319)
.|+.....+++..+.... ..+..-...+.-+....|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 899888888998887652 2233333333334455677676777777666543 44444334444444445443 67778
Q ss_pred HHHHHHH
Q 039029 242 LLDQMKR 248 (319)
Q Consensus 242 ~~~~~~~ 248 (319)
.+..+..
T Consensus 651 ~L~~L~~ 657 (963)
T 4ady_A 651 VLDPLTK 657 (963)
T ss_dssp HHHHHHT
T ss_pred HHHHHcc
Confidence 8888764
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.68 E-value=15 Score=28.57 Aligned_cols=140 Identities=14% Similarity=0.032 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHH----HHHHHHcCCCcChhhHHHHHHHHHHcCchh-HHHHHHHHHhh----CC--CCCChHHHHHHH
Q 039029 54 GYCNKGNLEMAFSF----RDEMVKQGIMPTASTYNLLIHELLMERKMV-EADDMLKEMGE----KG--IVPDSITYNILI 122 (319)
Q Consensus 54 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~ 122 (319)
.+.+.|+...+-++ ++-..+.+++++......++..+.....-+ .-..+++++.+ .| ..-++.....+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34445555444333 234444566667666666666655443211 11122222211 11 223566667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
..|.+.+++.+|...|- .|-.++...+..++.-+...+... .++...-.++ -.|.-.++..
T Consensus 144 ~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaV-L~yL~l~n~~ 204 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAV-LPYLLVANVR 204 (336)
T ss_dssp HHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHH-HHHHHTTCHH
T ss_pred HHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHH-HHHHHhCCHH
Confidence 77777777777766652 232333355555544433332211 1122222222 2345566777
Q ss_pred HHHHHHHHHH
Q 039029 203 RAFSLLKEMD 212 (319)
Q Consensus 203 ~a~~~~~~~~ 212 (319)
.|..+++...
T Consensus 205 ~A~~~~~~f~ 214 (336)
T 3lpz_A 205 AANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.78 E-value=22 Score=28.52 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=102.4
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHhCC-CC---CCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcChhhH---
Q 039029 12 TYGSFVSGMCKEGRLEEASRMLEQMKENG-LV---PTAVTYNTLIDGYCNKG-NLEMAFSFRDEMVKQGIMPTASTY--- 83 (319)
Q Consensus 12 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~--- 83 (319)
....|...|.+.|+.++..+++......= .- ........++..+.... ..+.-.++..+.++..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34568889999999999999988765421 11 12345667777776643 334444444444332100 11222
Q ss_pred ---HHHHHHHHHcCchhHHHHHHHHHhhCCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCccHHHH
Q 039029 84 ---NLLIHELLMERKMVEADDMLKEMGEKGIVPD-----SITYNILINGYCRCGNAKKAFSLHDEMIHK--GIQPTMLTY 153 (319)
Q Consensus 84 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 153 (319)
..++..|...|++.+|.+++.++.+.-...| ...+..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2678889999999999999888876311111 234555577888999999999999877653 222333332
Q ss_pred HHH----HHHHh-hhccHHHHHHHHHHHh
Q 039029 154 TSL----IFVLS-KQNRMIEADQLFENFL 177 (319)
Q Consensus 154 ~~l----~~~~~-~~~~~~~a~~~~~~~~ 177 (319)
..+ ...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 222 23345 7888888888776654
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.14 E-value=20 Score=27.65 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHH
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLL 208 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455555555566666665555544
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.10 E-value=14 Score=24.86 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC
Q 039029 239 ARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITP 295 (319)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 295 (319)
+..+|..|..+|+-.... ..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~A------lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSS------PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555544433321 334444444455555555555555555444444
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.34 E-value=25 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHH
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLL 208 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (319)
|+.....+...|.+.+++.+|..-|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455555556666666666655544
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.10 E-value=25 Score=27.13 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHH----HHHHHhhCCCCCChHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD----MLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 122 (319)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...+-+ +++.+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555666777777777777765432 22344455444443 344455566777777777777
Q ss_pred HHHHhcCChH-HHHHHHHHHHH----cC--CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 039029 123 NGYCRCGNAK-KAFSLHDEMIH----KG--IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 123 ~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
..+.....-+ .=.++++.+.+ .| ..-++.....+...|.+.+++.+|...|-. +-.-|...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 7665533211 12334444432 22 124677888888999999999988877642 1111344555444333
Q ss_pred hcC---CcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 039029 196 CTN---GNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 196 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
... |...++ +... ...+--|...|+...|..+++...+
T Consensus 176 ~~~~~~~~~~e~--------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFF-SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332 332221 1111 1122334567888888888877654
No 269
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=75.94 E-value=15 Score=24.47 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
+.+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..+
T Consensus 11 ~~l~~~g~r~T~--------qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITP--------QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCH--------HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 345667777664 3456777777777888999999999888767788888788888888776543
No 270
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=74.91 E-value=13 Score=24.96 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..+
T Consensus 16 ~~l~~~g~r~T~--------qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 16 MSIKKNGLKNSK--------QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHCC--CHH--------HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 345667776553 3456777777777888999999999888767788887777888887776543
No 271
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=73.97 E-value=15 Score=24.03 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHHHcCCCCCCcccCcchhhHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ-EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
.+.+.|.+++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-..+
T Consensus 8 ~l~~~g~r~T~--------qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTL--------PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCH--------HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 35567776654 3456677777666 788899999999988767788887777888887776543
No 272
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=72.15 E-value=14 Score=24.72 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ-EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
+.+.+.|++++. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 6 ~~l~~~g~r~T~--------qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTL--------PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCH--------HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345667776654 3456677776666 67889999999998876778888777788888777654
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.93 E-value=29 Score=26.04 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=74.8
Q ss_pred HHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHH
Q 039029 158 FVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVE 237 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 237 (319)
....+.|++++++.....-++..+. |...-..++..+|-.|++++|..-++...+. .|+...-..+.+.. =
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~l------I 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHL------V 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHH------H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHH------H
Confidence 3456778888888888877777544 7777778888888899999998888887765 34432211111111 1
Q ss_pred HHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHH--hcCchhHHHHHHHHHHhC
Q 039029 238 EARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLC--KNQEGDLAEELLREMVSK 291 (319)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 291 (319)
.|+..=..+...+..|....- ...-...++.+.. ..|+.+.|.++-.++.+.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~--~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGE--NEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222223334444444544321 2223345555543 469999999988888664
No 274
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.92 E-value=5.1 Score=23.46 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=32.7
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCch
Q 039029 36 MKENGLVPTAVTYNTLIDGYCNKG-NLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKM 96 (319)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (319)
+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 445565554433 34444444443 4445666666666655445555666666666665543
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.49 E-value=21 Score=24.36 Aligned_cols=50 Identities=6% Similarity=0.114 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCC
Q 039029 204 AFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 253 (319)
..++|..|...++-.. ...|......+...|++.+|.++|..-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4455666655544332 3345555555666666666666666666665544
No 276
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=71.19 E-value=14 Score=24.54 Aligned_cols=62 Identities=10% Similarity=0.203 Sum_probs=44.8
Q ss_pred HHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 244 DQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
+.+.+.|++++. .-..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 8 ~~L~~~g~r~T~--------qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTP--------QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCH--------HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCH--------HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 345566777654 3355666666666 7789999999998876778888777778887777554
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.79 E-value=16 Score=22.55 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=21.9
Q ss_pred HhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Q 039029 160 LSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRM 214 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (319)
+...|++++|..+.+.. ..||...|.+|.. .+.|-.+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 44455555554443322 2345555544433 2444444444444444443
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.96 E-value=17 Score=22.49 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=6.6
Q ss_pred HHHhcCChHHHHHHH
Q 039029 124 GYCRCGNAKKAFSLH 138 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~ 138 (319)
.+.+.|+|++|..+.
T Consensus 49 SLmNrG~Yq~Al~l~ 63 (116)
T 2p58_C 49 SLMNRGDYASALQQG 63 (116)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHcchhHHHHHHhc
Confidence 334444444444443
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.86 E-value=53 Score=28.26 Aligned_cols=253 Identities=11% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHc
Q 039029 14 GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLME 93 (319)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (319)
+.-+..+.+.+++...+..+ .. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFS----PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHC----CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhc----cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Q ss_pred CchhH--HHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHH--------------HH
Q 039029 94 RKMVE--ADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTS--------------LI 157 (319)
Q Consensus 94 ~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~ 157 (319)
|.... ...-++.+...+ +...-..++... ..+.....+.+..+... +++...... .+
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l--~~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM--PADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAF 222 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC--CGGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC--CHHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHH
Q ss_pred HHHhhhccHHHHHHHHHHHhhCCCCcc---HHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 039029 158 FVLSKQNRMIEADQLFENFLAKGMLPD---IVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQG 234 (319)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 234 (319)
.-+.+. +.+.|...+....+.....+ ......+.......+...++...+...... ..+.......+....+.|
T Consensus 223 ~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 223 ASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHT
T ss_pred HHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCC
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
+++.|...|..|......... ..-=+.+++...|+.++|..+|+.+..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r--------~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDE--------WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHh--------HHHHHHHHHHHcCCHHHHHHHHHHHhc
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.27 E-value=57 Score=29.86 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=71.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCccc------------
Q 039029 191 LIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISF------------ 258 (319)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 258 (319)
++..+...|..+-+.++. .. .+.++..--.+.++|...|++++|..+|+++- .|+..+....
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 445555566666544433 21 22344433457788999999999999998863 2333222110
Q ss_pred -C---cchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH----HHHHHHHHhhhcc
Q 039029 259 -N---PTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN----TYFSLIEGIASVD 311 (319)
Q Consensus 259 -~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 311 (319)
. ....-|..++..+-+.+-++.+.++.+..++.--.-|.. .|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 112367889999999999999999999988752122332 4666666665544
No 281
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=68.60 E-value=21 Score=24.35 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=51.3
Q ss_pred HHHHHHHHH-HHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCChHHHHHHHHHhhhcch
Q 039029 236 VEEARRLLD-QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSK--GITPDDNTYFSLIEGIASVDK 312 (319)
Q Consensus 236 ~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 312 (319)
.+.+.+-+. .+.+.|.+.+. .-..++..+...++.-.|.++++.+.+. +...+..|...-++.+.+.|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~--------qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK--------QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH--------HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444443 45566777654 3467778888888889999999999887 666787787777788887776
Q ss_pred hhh
Q 039029 313 AAE 315 (319)
Q Consensus 313 ~~~ 315 (319)
..+
T Consensus 85 v~~ 87 (162)
T 4ets_A 85 VTS 87 (162)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.65 E-value=19 Score=22.22 Aligned_cols=18 Identities=6% Similarity=-0.213 Sum_probs=7.2
Q ss_pred hcCChHHHHHHHHHHHHc
Q 039029 127 RCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (319)
+.|-.+++...+..+..+
T Consensus 80 rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HTTCHHHHHHHHHHHHTC
T ss_pred hcccHHHHHHHHHHHHhC
Confidence 334444444444333333
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.32 E-value=44 Score=26.35 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGN--AKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
...++.-|...++.+++...++++..... .......++......++ -+.+-.++..+.. ++-+.......+...+
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 45677888889999999999988753221 23333344443333332 2344555555553 4444444444444444
Q ss_pred hhhccHH----HHHHHHH----HHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH---h---------------C
Q 039029 161 SKQNRMI----EADQLFE----NFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMD---R---------------M 214 (319)
Q Consensus 161 ~~~~~~~----~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---------------~ 214 (319)
....+.. .|..++- +++..++-|-........ .. .-..+.+++++.. . .
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~----~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhh----cc-cchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Confidence 4443322 2333332 333333322111111000 00 1112222222211 1 0
Q ss_pred CCCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcC--chhHHHHHHHHHH
Q 039029 215 KVHPD---EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ--EGDLAEELLREMV 289 (319)
Q Consensus 215 ~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 289 (319)
+..|. ......++.-|...|+.++|.+.++++.. |.. . ...+...+..++-+.+ ..+....++..+.
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~----p~f---h-he~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEV----PHF---H-HELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC----TTC---H-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccC----Ccc---h-HHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 11222 12347788889999999999999999842 211 0 1123344444544433 2455777777777
Q ss_pred hCCCCCChHHHHHHHH
Q 039029 290 SKGITPDDNTYFSLIE 305 (319)
Q Consensus 290 ~~~~~~~~~~~~~l~~ 305 (319)
..|+-+.......+.+
T Consensus 281 ~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 281 KSSTITIDQMKRGYER 296 (358)
T ss_dssp HTTCSCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 7665544443333333
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.24 E-value=21 Score=26.45 Aligned_cols=211 Identities=12% Similarity=0.090 Sum_probs=94.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcChh---hHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHH--HHHHHHH
Q 039029 50 TLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAS---TYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--YNILING 124 (319)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 124 (319)
..+...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+. .+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHH
Confidence 3455566778876655554 444333321 1123345556667765444 4444454433211 1123334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCccH---HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHH------------HHH
Q 039029 125 YCRCGNAKKAFSLHDEMIHKGIQPTM---LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIV------------MFN 189 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~ 189 (319)
.+..|+.+- ++.+.+.|..++. .-.+.+ ......|+.+-...++ +.|..++.. .-.
T Consensus 79 A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVKL----LKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLY----KRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHHH----HHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHH----HTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHHH----HHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHHHHHH----HhCCCcccccccHHHHHhhccCCC
Confidence 445566544 4444445543332 122222 3334556655444433 333332211 001
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHH
Q 039029 190 ALIDGHCTNGNIERAFSLLKEMDRMKVHPD---EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYN 266 (319)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (319)
..+...+..|+.+-+..+++.. +..++ ..-.+.+..+ ...+......++.+.+.+.|..++... ..-.+
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~----~~g~t 221 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRG----ERGKT 221 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCC----TTSCC
T ss_pred cHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcC----CCCCc
Confidence 2333344567766555554431 32222 2222333333 345565555677777888877666421 11222
Q ss_pred HHHHHHHhcCchhHHHHHHH
Q 039029 267 ALIQGLCKNQEGDLAEELLR 286 (319)
Q Consensus 267 ~l~~~~~~~g~~~~A~~~~~ 286 (319)
. +....+.|+.+-+..+++
T Consensus 222 ~-L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 222 P-LILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp H-HHHHHHTTCHHHHHHHHH
T ss_pred H-HHHHHHcCCHHHHHHHHh
Confidence 2 333445566554444433
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.85 E-value=20 Score=22.17 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=22.9
Q ss_pred HHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039029 90 LLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKG 145 (319)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (319)
+...|++++|..+.+... .||...|.+|.. .+.|-.+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444555555554443332 345555544432 24444445444444444443
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=65.78 E-value=35 Score=24.55 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=12.6
Q ss_pred HHHHHcCchhHHHHHHHHHhhC
Q 039029 88 HELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3455566666666666665543
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.61 E-value=44 Score=25.70 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHH
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNA--KKAFSLHDEMIH 143 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~ 143 (319)
...++.-|...|+.++|...++++..... .......++......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45678889999999999999988753321 222333444444444432 345556666653
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.14 E-value=32 Score=23.18 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=9.8
Q ss_pred HHHHHHHcCchhHHHHHHHHH
Q 039029 86 LIHELLMERKMVEADDMLKEM 106 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~ 106 (319)
++.-|...++.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.51 E-value=33 Score=23.13 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCC
Q 039029 204 AFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPD 254 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 254 (319)
..++|..|...++-.. ...|......+...|++.+|.++|+.-++.+..|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5667777766654433 34566666677777777777777777777665553
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.29 E-value=34 Score=22.99 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh--ccHHHHHHHHHHHhhCCCCcc
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ--NRMIEADQLFENFLAKGMLPD 184 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~ 184 (319)
...++.-|...|+.++|.+.++++....+ -...+...+..++-+. ...+.+..++..+...++-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45677888888999999988888752211 1223334444455543 224556667777766655543
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.44 E-value=52 Score=24.61 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=79.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHH--HHHHHHHHHhcC
Q 039029 52 IDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSIT--YNILINGYCRCG 129 (319)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 129 (319)
+...+..|+.+-+..+++ .|..++...-...+...+..|+.+-+..++ +.|..++... -.+.+...+..|
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHHHHHHHcC
Confidence 344456677765555444 343333221122344455566665444443 3444333211 112233445566
Q ss_pred ChHHHHHHHHHHHHcCCCccHH---HHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHH
Q 039029 130 NAKKAFSLHDEMIHKGIQPTML---TYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAF 205 (319)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 205 (319)
+.+-+..++ +.|..++.. -+.+.+...+..|+.+-+..+ .+.|..+ +...-.+.+...+..|+.+-+.
T Consensus 107 ~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 107 NMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp CHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCccccccCCccHHHHHHHcChHHHHH
Confidence 655444443 334333321 112333444455665544333 3333322 1101223344455677777666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 206 SLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.+++.-..... .+..-.+..+...+..|+. ++.+.+++.|..++.
T Consensus 179 ~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 179 LLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 66655333221 1111112222223344553 445556666766665
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.84 E-value=46 Score=23.67 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=65.1
Q ss_pred HHHHhcCC--hHHHH-HHHHHHHHc-----CCCccHHHHHHHHHHHhh--hccHHHHHHHHHHHhhCCCCc-cHHHHHHH
Q 039029 123 NGYCRCGN--AKKAF-SLHDEMIHK-----GIQPTMLTYTSLIFVLSK--QNRMIEADQLFENFLAKGMLP-DIVMFNAL 191 (319)
Q Consensus 123 ~~~~~~~~--~~~a~-~~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 191 (319)
..|-..+. -.... .++++.... ....|+.-....+..... .+...+...+|..|...|+-- -...|...
T Consensus 42 e~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~w 121 (202)
T 3esl_A 42 TSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEF 121 (202)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHH
T ss_pred HhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 44544444 22344 677776653 234455544444433222 444678999999998876643 36678888
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCCCC
Q 039029 192 IDGHCTNGNIERAFSLLKEMDRMKVHPD 219 (319)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (319)
...+...|++.+|.++|+.-.+.+-.|-
T Consensus 122 A~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 122 SKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 8899999999999999999888776663
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.79 E-value=32 Score=24.56 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChHHHHHHHH
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGLVPTAV--TYNTLIDGYCNKGNLEMAFSFRD 69 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 69 (319)
+...++.|+.+....+++ .|..++.. .-...+...+..|+.+-+..+++
T Consensus 13 l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 344567788766655554 44333221 11234455566777655544443
No 294
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.71 E-value=24 Score=20.42 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHcCCCCCCcccCcchhhHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhh
Q 039029 245 QMKRRGIKPDHISFNPTRLTYNALIQGLCKNQ-EGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
.+.+.|...+. .-..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-..
T Consensus 7 ~l~~~g~~~t~--------~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTL--------PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCH--------HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 35566665543 3355666666654 67788999999988766678888888888888877654
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.51 E-value=39 Score=24.46 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCC
Q 039029 204 AFSLLKEMDRMKVHPD-EVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKP 253 (319)
Q Consensus 204 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 253 (319)
..++|..|...++-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345555544443222 2334444555555555555555555555554443
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=57.97 E-value=48 Score=23.66 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=8.5
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 039029 56 CNKGNLEMAFSFRDEMVKQ 74 (319)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~ 74 (319)
+..|+.+.+..+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3445544444444444333
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=57.07 E-value=37 Score=22.02 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=10.0
Q ss_pred HHHHHHHcCchhHHHHHHHHH
Q 039029 86 LIHELLMERKMVEADDMLKEM 106 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~ 106 (319)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 344444445555555444444
No 298
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=56.86 E-value=26 Score=20.29 Aligned_cols=33 Identities=6% Similarity=0.049 Sum_probs=21.1
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 039029 5 GVQPDSYTYGSFVSGMCKEGRLEEASRMLEQMK 37 (319)
Q Consensus 5 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 37 (319)
+++|++.||+-+...+-+..=..++..+..++.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 677778888777766665555555555555443
No 299
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=56.86 E-value=14 Score=20.18 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhCCCCCChHHHHHHHHHh-hhcchh
Q 039029 278 GDLAEELLREMVSKGITPDDNTYFSLIEGI-ASVDKA 313 (319)
Q Consensus 278 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 313 (319)
.++|.+.|.+|+...-.++..+|...++.+ .+-.++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 467888888888764445667888888887 554433
No 300
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=56.72 E-value=20 Score=23.61 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (319)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44445554555566666666665554445544444444444444
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.06 E-value=57 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 039029 184 DIVMFNALIDGHCTNGNIERAFSLLKEM 211 (319)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (319)
+.......+....+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445556666666666666666544
No 302
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.61 E-value=25 Score=22.83 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 35666666777788999999999988767788888888888888776543
No 303
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.50 E-value=22 Score=23.06 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKG 59 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (319)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666665554445444444444444444
No 304
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=55.40 E-value=22 Score=23.43 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhhhcchhhh
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVSKGITPDDNTYFSLIEGIASVDKAAE 315 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 315 (319)
..++..+...++.-.|.++++.+.+.+...+..|....++.+.+.|-..+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45677777777788999999999988777788888888888888776543
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.92 E-value=47 Score=22.57 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=9.4
Q ss_pred HHHHHcCchhHHHHHHHHHhhC
Q 039029 88 HELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
..+...+..-.|.++++.+.+.
T Consensus 40 ~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 40 KTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHhh
Confidence 3333333444444444444433
No 306
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.72 E-value=51 Score=23.54 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=44.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVT--YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST--YNLLIHELL 91 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 91 (319)
.+...++.|+.+.+..+++.+.+.+..++... -...+...+..|+.+-+ +.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHH
Confidence 45566778999988888887776664443221 11234444566666543 34444554433211 112233344
Q ss_pred HcCchhHHHHHHHH
Q 039029 92 MERKMVEADDMLKE 105 (319)
Q Consensus 92 ~~~~~~~a~~~~~~ 105 (319)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55665554444444
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.38 E-value=46 Score=22.04 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHc
Q 039029 132 KKAFSLHDEMIHK 144 (319)
Q Consensus 132 ~~a~~~~~~~~~~ 144 (319)
-.|.++++.+.+.
T Consensus 34 ~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 34 ATPDDILGEVRKT 46 (145)
T ss_dssp BCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhh
Confidence 3444444444433
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.78 E-value=82 Score=24.41 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 039029 264 TYNALIQGLCKNQEGDLAEELLREMVSKG 292 (319)
Q Consensus 264 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 292 (319)
++...+....+.+++..|..+.+++++.+
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34445555666666666666666666654
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=51.54 E-value=73 Score=23.79 Aligned_cols=204 Identities=8% Similarity=0.036 Sum_probs=95.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCh---hhHHHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTA---STYNLLIHELLM 92 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 92 (319)
.+...+..|+.+-+..+++ .|..++..--...+...+..|+.+-+..++ +.|..++. .-.+ .+...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCc-HHHHHHH
Confidence 3455566787766655554 343333221123444556677766554444 44544332 1222 2344556
Q ss_pred cCchhHHHHHHHHHhhCCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhhhccHHH
Q 039029 93 ERKMVEADDMLKEMGEKGIVPDS---ITYNILINGYCRCGNAKKAFSLHDEMIHKGIQP-TMLTYTSLIFVLSKQNRMIE 168 (319)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 168 (319)
.|+.+-+..+++. |..++. .-+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655555444 333322 1223445555666766544 3444444322 11122333444556777777
Q ss_pred HHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 039029 169 ADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQM 246 (319)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (319)
+..+++.-...... +....+..+...+..|+.+ +.+.+.+.|..++.... .-...|+.+-+.-+++.-
T Consensus 177 v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 177 MILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcC
Confidence 66666553332211 1111111223334455543 55556667777765542 113456655555554443
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.38 E-value=60 Score=22.75 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=82.6
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
++..+-...+..+...+..+ +...+..+... ++...-...+.++...++.+. ...+..+... ++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~~---~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALKD---EDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHcC---CCHHHHHHHH
Confidence 46666666666666666633 33333333332 355566666666776665433 3334444332 4666666677
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
.++.+.++.+. ...+..+.. .++..+-...+.++.+.+..+ +...+..+... ++..+-...+.+..+.+..
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~- 173 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE- 173 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 77777776543 333333332 456666666677777666543 33444444432 4555555566666666653
Q ss_pred HHHHHHHHHHh
Q 039029 203 RAFSLLKEMDR 213 (319)
Q Consensus 203 ~a~~~~~~~~~ 213 (319)
.+...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.22 E-value=67 Score=23.28 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCChH
Q 039029 237 EEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDDN 298 (319)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 298 (319)
+.+..+|..|...|+-.... ..|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~A------lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESS------IFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 46778999999998766553 567888888999999999999999999987777543
No 312
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=51.04 E-value=85 Score=26.60 Aligned_cols=73 Identities=5% Similarity=-0.083 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHH
Q 039029 95 KMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEA 169 (319)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (319)
+.......++++..+-+.-+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|++.|+++.+
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 34455566666665544445666777788888888888888888777665332 33444 445567777776654
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.02 E-value=52 Score=21.94 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhh
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSK 162 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (319)
.++..+...+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3344444444445555555555544333343333333344433
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.10 E-value=60 Score=22.35 Aligned_cols=60 Identities=12% Similarity=0.239 Sum_probs=28.1
Q ss_pred HhcCCcHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCC
Q 039029 195 HCTNGNIERAFSLLKEM-DRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDH 255 (319)
Q Consensus 195 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (319)
.+..|+.+-+..+++.- .... ..+..-.+.+..+.........-.++.+.+.+.|..++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 34556666555554432 1111 122223344444443332233345666777777766654
No 315
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.79 E-value=59 Score=22.22 Aligned_cols=73 Identities=11% Similarity=0.016 Sum_probs=52.2
Q ss_pred CCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh
Q 039029 146 IQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLP-DIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221 (319)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (319)
...|+......+...... +....+|..|...++-- -...|......+...|++.+|.++|..-++.+-.|-..
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 345665555555433333 34677888888886643 35677888888899999999999999998887677543
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=49.52 E-value=86 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCchhHHHHHHHHHh
Q 039029 83 YNLLIHELLMERKMVEADDMLKEMG 107 (319)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888888775
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.44 E-value=74 Score=23.27 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=48.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCc----ChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHH
Q 039029 51 LIDGYCNKGNLEMAFSFRDEMVKQ--GIMP----TASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124 (319)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (319)
-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 455667778888888877766543 1121 111222233333333333344444444432 2355555666677
Q ss_pred HHhcCChHHHHHHHHHHH
Q 039029 125 YCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~ 142 (319)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777888888877775543
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.36 E-value=54 Score=21.67 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 039029 132 KKAFSLHDEMIH 143 (319)
Q Consensus 132 ~~a~~~~~~~~~ 143 (319)
-.|.++++.+.+
T Consensus 38 ~sa~ei~~~l~~ 49 (145)
T 2fe3_A 38 PTADDIYKALEG 49 (145)
T ss_dssp CCHHHHHHHHGG
T ss_pred CCHHHHHHHHHH
Confidence 334444444433
No 319
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.98 E-value=1e+02 Score=24.37 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc--HHHHHHHHHHHHhCCC
Q 039029 153 YTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN--IERAFSLLKEMDRMKV 216 (319)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 216 (319)
...++.-|...++.++|.+.++++...... ...+...+..+.-+.++ .+....++..+...++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 456666677777777777777776532221 12233333344443322 3445566666655543
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.66 E-value=6.5 Score=29.02 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCHHh-------HHHHHHHHH--hcCChHHHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTAVT-------YNTLIDGYC--NKGNLEMAFSFRDEM 71 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 71 (319)
.+...++.|+.+....+++.+.+.+..++... .+.+..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34455677888888778877666555444322 233333321 456666666666554
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.59 E-value=60 Score=21.64 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 039029 133 KAFSLHDEMIH 143 (319)
Q Consensus 133 ~a~~~~~~~~~ 143 (319)
.|.++++.+.+
T Consensus 35 sa~ei~~~l~~ 45 (150)
T 2w57_A 35 SAEELYKKLID 45 (150)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33444444333
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.55 E-value=56 Score=21.29 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHc
Q 039029 131 AKKAFSLHDEMIHK 144 (319)
Q Consensus 131 ~~~a~~~~~~~~~~ 144 (319)
.-.|.++++.+.+.
T Consensus 34 ~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 34 HMSAEDVYKALMEA 47 (136)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 34444444444444
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=47.13 E-value=98 Score=24.00 Aligned_cols=85 Identities=13% Similarity=-0.004 Sum_probs=39.1
Q ss_pred HHHhcCCcHHHHHHHHHHHHh-CCC---CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHH
Q 039029 193 DGHCTNGNIERAFSLLKEMDR-MKV---HPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNAL 268 (319)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 268 (319)
...+..|+.+-+..+++.-.. .+. ..+..-.+.| ...+..|..+ +.+.+++.|..++.. +..-.+.+
T Consensus 178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~~~~----d~~g~tpL 248 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMGIDVNME----DNEHTVPL 248 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTTCCTTCC----CTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCCCCC----CCCCCCHH
Confidence 334566777766655554222 000 1111222222 2334566654 444455566665542 21222333
Q ss_pred HHHHHhcCchhHHHHHHHH
Q 039029 269 IQGLCKNQEGDLAEELLRE 287 (319)
Q Consensus 269 ~~~~~~~g~~~~A~~~~~~ 287 (319)
. .....|..+-+..+++.
T Consensus 249 ~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 Y-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp H-HHHHTCCHHHHHHHHHH
T ss_pred H-HHHHhChHHHHHHHHHc
Confidence 3 33455776666666654
No 324
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.40 E-value=73 Score=22.00 Aligned_cols=132 Identities=10% Similarity=0.022 Sum_probs=76.4
Q ss_pred HhhhccHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHc-CC
Q 039029 160 LSKQNRMIEADQLFENFLAKGML-PDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV---TYNTLMHGRCR-QG 234 (319)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~g 234 (319)
.++.|+.+....++.. +.. .+...-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3567888876665543 221 121111234455566677666666777777777666543 33444444332 33
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCch-hHHHHHHHHHHh-CCCCCChHH
Q 039029 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEG-DLAEELLREMVS-KGITPDDNT 299 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~-~~~~~~~~~ 299 (319)
+.....++.+.+++.|..++. .+..-.+..+......+.. ..-..+++.+++ .|..++...
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~----~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITA----LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSS----CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred chhhHHHHHHHHHHCCCCCCc----cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 456677888889998887776 3444442333333333433 345678888888 788887753
No 325
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.57 E-value=21 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=16.9
Q ss_pred cCChHHHHHHHHHHHhCC-CCCCH
Q 039029 23 EGRLEEASRMLEQMKENG-LVPTA 45 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~-~~~~~ 45 (319)
.-+++.|+..|.++...| ++|++
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457899999999987654 55544
No 326
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.70 E-value=64 Score=20.88 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhCCCCccH
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN--RMIEADQLFENFLAKGMLPDI 185 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 185 (319)
...++.-|...|+.++|.+.++++....+ -...+...+..++-+.+ ..+....++..+...++-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45678888889999999999988752211 12233444444555543 245667777777766655433
No 327
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.43 E-value=86 Score=22.25 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=14.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 039029 122 INGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
+..|.+.|.+++|.+++++....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 34567777777777777765443
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.53 E-value=80 Score=21.66 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=41.1
Q ss_pred HhcCCcHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcC-CCCCCcccCcchhhHHHHHHHHH
Q 039029 195 HCTNGNIERAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRG-IKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
.+..|+.+-+..+++.-...--..+..-.+. +...+..|+.+-+.. +.+.+ ..++.. +..-.+.+..+.
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~----Ll~~g~~~~~~~----~~~g~t~L~~A~- 148 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKL----LLEDGREDIDFQ----NDFGYTALIEAV- 148 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHH----HHHHCCCCTTCC----CTTSCCHHHHHH-
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHH----HHHcCCCCcCCC----CCCCCCHHHHHH-
Confidence 3456666655555533211000112211222 233445667654444 44444 333321 222333444443
Q ss_pred hcCc-hhHHHHHHHHHHhCCCCCCh
Q 039029 274 KNQE-GDLAEELLREMVSKGITPDD 297 (319)
Q Consensus 274 ~~g~-~~~A~~~~~~~~~~~~~~~~ 297 (319)
..++ ...-.++++.+++.|..++.
T Consensus 149 ~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 149 GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HhccchhhHHHHHHHHHHCCCCCCc
Confidence 3343 33346677777777766654
No 329
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.72 E-value=1.6e+02 Score=24.68 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 039029 13 YGSFVSGMCKEGRLEEASRMLEQM 36 (319)
Q Consensus 13 ~~~li~~~~~~~~~~~a~~~~~~~ 36 (319)
+|.+++.|...+.++.|..+....
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 455555555556666666655554
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.41 E-value=1.5e+02 Score=24.22 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=30.6
Q ss_pred hhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHhCC
Q 039029 162 KQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGN-----IERAFSLLKEMDRMK 215 (319)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 215 (319)
+.++.+.|..++.+|.+.|..|....-..+..+....|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346777788888888877766654444444444444443 233444455555555
No 331
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.11 E-value=94 Score=21.17 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=27.2
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 039029 23 EGRLEEASRMLEQMKENGLVP--TAVTYNTLID-G-----YCNKGNLEMAFSFRDEMVK 73 (319)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 73 (319)
.|++-+|-++++.+-.....+ ....|..+|+ + ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666665544333 3344444444 1 2235666666666655544
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.36 E-value=2.5e+02 Score=25.82 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCcc----HHHHHHHHHHHhcCC
Q 039029 150 MLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPD----IVMFNALIDGHCTNG 199 (319)
Q Consensus 150 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~ 199 (319)
..-|..++..+.+.+.++.+.++-+.++..-...| ...|..+.++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 34778888888899999988888887776422222 346677777666543
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=36.76 E-value=1.8e+02 Score=24.05 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=50.4
Q ss_pred CCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHH
Q 039029 75 GIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYT 154 (319)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (319)
|++--...|..-...+...|++++|.++--...+. +--+..|.+.+-..-...|+..-.+.+|..+.+.| ..+..--.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 33333444555555666667777766665554432 33355555554444444455555666666666665 34443334
Q ss_pred HHHHHHhhhccHHHHHHHH
Q 039029 155 SLIFVLSKQNRMIEADQLF 173 (319)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~ 173 (319)
-+++.-...|+.+-..+++
T Consensus 434 El~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHhHHHHhccHHHHHHHHH
Confidence 4444444555555444444
No 334
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=36.21 E-value=1.9e+02 Score=24.55 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=39.8
Q ss_pred hHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHH
Q 039029 47 TYNTLIDGYCN--KGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILING 124 (319)
Q Consensus 47 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (319)
.|..-+..+.. ..+.........+++.+-..-+..-..-++..|.+.|-.+.|.++++.+..+-.. +...+ ..+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHH
Confidence 34444444332 3344555666666665533335556667788888888889999998888776544 44555 55677
Q ss_pred HHhcCChHHHH
Q 039029 125 YCRCGNAKKAF 135 (319)
Q Consensus 125 ~~~~~~~~~a~ 135 (319)
|.++|+++.+.
T Consensus 559 f~rA~~~~~Vk 569 (570)
T 3f3f_C 559 FSRAGKYELVK 569 (570)
T ss_dssp -----------
T ss_pred HHHcCChhhcc
Confidence 88888877653
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.08 E-value=1.2e+02 Score=21.87 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhhCCCCCChH--H-----HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039029 96 MVEADDMLKEMGEKGIVPDSI--T-----YNILINGYCRCGNAKKAFSLHDEMIHK 144 (319)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (319)
.+.|+.+|+.+.+....++.. . -...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 466777777776553222211 1 123456789999999999999998875
No 336
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.92 E-value=1.1e+02 Score=21.51 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=23.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcChh--hHHHHHHHHHHcCchhHHHHHHH
Q 039029 54 GYCNKGNLEMAFSFRDEMVKQGIMPTAS--TYNLLIHELLMERKMVEADDMLK 104 (319)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 104 (319)
..+..|+.+.+..+++ .|..++.. .-...+...+..|+.+-+..+++
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 3456777666555544 44333221 11224455666777665544443
No 337
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.82 E-value=1.2e+02 Score=21.62 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=8.3
Q ss_pred ccHHHHHHHHHHHhhCC
Q 039029 164 NRMIEADQLFENFLAKG 180 (319)
Q Consensus 164 ~~~~~a~~~~~~~~~~~ 180 (319)
.+.+.|+-++.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444555555544
No 338
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.30 E-value=1.1e+02 Score=21.12 Aligned_cols=171 Identities=8% Similarity=-0.048 Sum_probs=91.0
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
++..+-...+..+...+..+.. ..+..+.. .++...-...+.++...++.+.. ..+..+... ++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~d---~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALKD---EDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHcC---CCHHHHHHHH
Confidence 4444555555555555543322 22223332 23555555566666666655433 334444432 4666666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHH
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIE 202 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (319)
.++.+.++.+.. ..+..+.. .++..+-...+.++.+.+..+ +...+..+... ++..+-...+.+....|..+
T Consensus 98 ~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 98 VALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCchh
Confidence 777777775433 33333332 456666666777777766643 34444444432 46666666677777777644
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 039029 203 RAFSLLKEMDRMKVHPDEVTYNTLMHGRCRQ 233 (319)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (319)
+...+..+.+. ++..+-...+.++.+.
T Consensus 170 -~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 170 -VRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp -HHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 55555555442 4555545555555443
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.18 E-value=1.1e+02 Score=20.92 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHhhCCCCC--ChHHHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 039029 94 RKMVEADDMLKEMGEKGIVP--DSITYNILIN------GYCRCGNAKKAFSLHDEMIH 143 (319)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 143 (319)
|++-+|.++++..=.....+ ....|..||. ...+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55555555555554433233 2333444443 12234555555555555443
No 340
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.68 E-value=1.4e+02 Score=23.93 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHhhhccHHHHHHHHHHHhhCC----------------CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 039029 156 LIFVLSKQNRMIEADQLFENFLAKG----------------MLPDIVMFNALIDGHCTNGNIERAFSLLKEMD 212 (319)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (319)
++.++....+.+++.+.++.+...- ...-......+...|...|+.+.|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445556667777777777653321 01123344455566666777777777776664
No 341
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.42 E-value=94 Score=25.54 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCCh--------hhHHH-HHHHHHcCCcHHHHHHHHHHHHH
Q 039029 188 FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDE--------VTYNT-LMHGRCRQGKVEEARRLLDQMKR 248 (319)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~-l~~~~~~~g~~~~a~~~~~~~~~ 248 (319)
.+.+...|.+.++...+..+++.+...+..|+. .+|.. +.+.+...+++.+|.+.+..+.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 445556666666666666666666554332221 12222 33444555666666655555444
No 342
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.20 E-value=1.1e+02 Score=20.85 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 039029 120 ILINGYCRCGNAKKAFSLHDEMI 142 (319)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~ 142 (319)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555666666666666666553
No 343
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.73 E-value=2.1e+02 Score=24.00 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHcCC
Q 039029 236 VEEARRLLDQMKRRGI 251 (319)
Q Consensus 236 ~~~a~~~~~~~~~~~~ 251 (319)
.++|+.+..+|+..|.
T Consensus 416 ~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 416 EQTVEYMVSRAIRDGV 431 (523)
T ss_dssp SSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3567778888877664
No 344
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.51 E-value=81 Score=19.10 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHhcCchhHHHH
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEE 283 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 283 (319)
...+.|.++++.+...|. .+|..++.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~-----------~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS-----------QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT-----------THHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh-----------HHHHHHHHHHHHcCcHHHHHH
Confidence 578999999999988764 578999999877676655543
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.42 E-value=78 Score=22.44 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=16.7
Q ss_pred HHHHHHHcCchhHHHHHHHHHhhC
Q 039029 86 LIHELLMERKMVEADDMLKEMGEK 109 (319)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~ 109 (319)
.+..|.+.|.+++|.+++++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 345678888888888888886554
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.27 E-value=1.3e+02 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 039029 47 TYNTLIDGYCNKGNLEMAFSFRDEMV 72 (319)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (319)
-...++.-|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35678888999999999999988774
No 347
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.07 E-value=49 Score=21.61 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=12.4
Q ss_pred HHHHHhccCChHHHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQ 35 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~ 35 (319)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34445566777777666655
No 348
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.03 E-value=1.4e+02 Score=23.12 Aligned_cols=211 Identities=16% Similarity=0.132 Sum_probs=98.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHH
Q 039029 14 GSFVSGMCKEGRLEEASRMLEQMKENGLVPTAVT--YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELL 91 (319)
Q Consensus 14 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (319)
.+.+...+..|+.+.+..+++ .|..++... -...+...+..|+.+-+.-+++ .|..++...-...+...+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----VGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTBCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCccccCCCCHHHHHH
Confidence 345566667788876666654 444333211 1223444556677655544443 343333312222344456
Q ss_pred HcCchhHHHHHHHHHhhCCCCCCh--------------------HHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcc
Q 039029 92 MERKMVEADDMLKEMGEKGIVPDS--------------------ITYNILINGYCRCG--NAKKAFSLHDEMIHKGIQPT 149 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~ 149 (319)
..|+.+-+..+++.....+..++. .-.+ .+...+..| +.+-+ +.+.+.|..++
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v----~~Ll~~ga~~~ 167 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMI----KILVQLGASPT 167 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHH----HHHHHHTCCTT
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHH----HHHHHcCCCCc
Confidence 678887777777765443433222 1122 333445556 44433 33334444333
Q ss_pred H---HHHHHHHHHHhhhccHHHHHHHHHHHhh-----CCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh
Q 039029 150 M---LTYTSLIFVLSKQNRMIEADQLFENFLA-----KGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV 221 (319)
Q Consensus 150 ~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (319)
. .-.+. +...+..|+.+-+..+++.-.. ... .+..-.+. +...+..|+.+-+.. +.+.|..++..
T Consensus 168 ~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~t~-L~~A~~~g~~~~v~~----Ll~~gad~~~~ 240 (364)
T 3ljn_A 168 AKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDY-ANKQGNSH-LHWAILINWEDVAMR----FVEMGIDVNME 240 (364)
T ss_dssp CCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-CCTTCCCT-THHHHTTTCHHHHHH----HHTTTCCTTCC
T ss_pred ccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccc-cCCCCCcH-HHHHHHcCCHHHHHH----HHHcCCCCCCC
Confidence 2 12223 3334466777666666554222 100 11111222 233456677654443 34445444322
Q ss_pred ---hHHHHHHHHHcCCcHHHHHHHHHH
Q 039029 222 ---TYNTLMHGRCRQGKVEEARRLLDQ 245 (319)
Q Consensus 222 ---~~~~l~~~~~~~g~~~~a~~~~~~ 245 (319)
-.+.| ...+..|..+-+..+++.
T Consensus 241 d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 241 DNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 22233 334456777776666665
No 349
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.37 E-value=1.9e+02 Score=22.27 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc--cHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 039029 118 YNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN--RMIEADQLFENFLAKGMLPDIVMFNALIDGH 195 (319)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (319)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.+ ..+...+++..+.+.++-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 345677888889999999988888532211 2334455555555543 2456777888888777665555444444444
Q ss_pred hcC
Q 039029 196 CTN 198 (319)
Q Consensus 196 ~~~ 198 (319)
...
T Consensus 248 ~~l 250 (307)
T 2zu6_B 248 NEI 250 (307)
T ss_dssp HHH
T ss_pred Hhc
Confidence 433
No 350
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.25 E-value=2.3e+02 Score=23.41 Aligned_cols=98 Identities=11% Similarity=0.045 Sum_probs=42.8
Q ss_pred CCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChhhHH
Q 039029 145 GIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEVTYN 224 (319)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (319)
|++--...|..-...+...|++++|.++--...+. +--+..|.+.+-..=..-|+..-...+|..+.+.| ..+..--.
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESl 433 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESL 433 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhh
Confidence 33333344444445555556666665554443322 22244444444333333344444455555554443 23332222
Q ss_pred HHHHHHHcCCcHHHHHHHHH
Q 039029 225 TLMHGRCRQGKVEEARRLLD 244 (319)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~ 244 (319)
-+++.-..+|+.+-..+++.
T Consensus 434 El~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 434 ELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHHHhccHHHHHHHHHh
Confidence 34444444555544444443
No 351
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.20 E-value=3e+02 Score=26.49 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 039029 61 LEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDE 140 (319)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (319)
.+...+.|.++.+---.-|.......+......+++..|.+++.++.+.. |+...|..++..+...| |.-.....+.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 33445566666554211233333333334446788888888888887653 56777777777766555 4444444444
Q ss_pred HHH
Q 039029 141 MIH 143 (319)
Q Consensus 141 ~~~ 143 (319)
+..
T Consensus 1342 ~~~ 1344 (1354)
T 3lxu_X 1342 MMI 1344 (1354)
T ss_dssp HHH
T ss_pred hhh
Confidence 433
No 352
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.76 E-value=1.4e+02 Score=20.73 Aligned_cols=138 Identities=9% Similarity=-0.093 Sum_probs=80.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHH
Q 039029 43 PTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDSITYNILI 122 (319)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (319)
++..+-...+.++...++.+ +...+..+.. .++..+-...+.++.+.++.+. ...+..+.+. ++...-...+
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~d---~~~~vr~~a~ 133 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA-VEPLIKALKD---EDWFVRIAAA 133 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHhC---CCHHHHHHHH
Confidence 45555566666666666543 3333334433 3466677777778888777544 4444445542 5777777778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccHHHHHHHHHHHh
Q 039029 123 NGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDIVMFNALIDGHC 196 (319)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (319)
.++.+.|+.+ +...+..+.. .++..+-...+.++.+.+.. .+...+..+... ++..+-...+.+..
T Consensus 134 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 134 FALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 8888887754 4444444443 45677777777777777763 445555555443 24444444444433
No 353
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.61 E-value=1.3e+02 Score=20.25 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039029 97 VEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQ 147 (319)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (319)
+.+..+++.+.+.|.-.|...-...+....+.| .....+-.++.++|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 344455555555555534333344444444433 1234455555556553
No 354
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=29.57 E-value=98 Score=19.90 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHH
Q 039029 48 YNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADD 101 (319)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (319)
|...|...+..++.+-|.++++..+..| +...|...+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4445555556666666666666666554 44556555555555555555544
No 355
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.89 E-value=1.6e+02 Score=20.98 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=21.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
+-.+.+.|+-.+.+|.+.| .|....-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3466777777777777777 555444444444444333
No 356
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.70 E-value=92 Score=25.59 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=46.2
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCCCCcccC-cchhhHH-HHHHHHHhcCchhHHHHHHHHHHh
Q 039029 222 TYNTLMHGRCRQGKVEEARRLLDQMKRRGIKPDHISFN-PTRLTYN-ALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
..+.+...|.+.++...+..+++.+...+..|....++ ....+|. -+.+.+...+++.+|.+.+..+..
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45778899999999999999999998876533322111 1223443 345556677888888776666544
No 357
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.70 E-value=1.3e+02 Score=19.80 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=9.2
Q ss_pred HHHHhccCChHHHHHHHH
Q 039029 17 VSGMCKEGRLEEASRMLE 34 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~ 34 (319)
+...++.|+.+.+..+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445566655555543
No 358
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.22 E-value=1.5e+02 Score=20.30 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=87.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhhhccHHHHHHHHHHHhhCCCCccH---HHHHHHHHHHh-cC
Q 039029 124 GYCRCGNAKKAFSLHDEMIHKGIQPTM-LTYTSLIFVLSKQNRMIEADQLFENFLAKGMLPDI---VMFNALIDGHC-TN 198 (319)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~-~~ 198 (319)
..++.|+.+....++. .+..... ..-.+.+...+..|+.+.-.++.+.+++.|..++. .-.+.|..++. ..
T Consensus 12 ~Aa~~g~~~~~~~l~~----~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFE----KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHH----HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHh----cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3457788887665554 3322111 11223445555667766666777778888876653 22333433322 23
Q ss_pred CcHHHHHHHHHHHHhCCCCCChhhHHH---HHHHHHcCCcH-HHHHHHHHHHHH-cCCCCCCcccCcchhhHHHHHHHHH
Q 039029 199 GNIERAFSLLKEMDRMKVHPDEVTYNT---LMHGRCRQGKV-EEARRLLDQMKR-RGIKPDHISFNPTRLTYNALIQGLC 273 (319)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (319)
.+.....++.+.+.+.|..++.....- .+...+..+.. ..-..+++.+++ .|..++. .|..-.+.+-. ..
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~----~d~~G~TpL~~-A~ 162 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI----KDKWGLTALEF-VK 162 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC----CCTTSCCHHHH-HH
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc----cCCCCCCHHHH-HH
Confidence 345556677888888888888664332 12222333332 455678888888 7877665 55555554443 34
Q ss_pred hcCchhHHHHHHHHHHhCCCC
Q 039029 274 KNQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~ 294 (319)
+.|..+-..-+.+.+.+.++.
T Consensus 163 ~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHHhcc
Confidence 445544333333333333433
No 359
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.98 E-value=1.2e+02 Score=20.64 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=12.3
Q ss_pred HHHHHHHHcCchhHHHHHHHHHh
Q 039029 85 LLIHELLMERKMVEADDMLKEMG 107 (319)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~ 107 (319)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555544
No 360
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.29 E-value=1.1e+02 Score=18.45 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHH
Q 039029 263 LTYNALIQGLCKNQEGDLAEELLREMV 289 (319)
Q Consensus 263 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 289 (319)
..+......+.+.|+|++|++..+...
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345667888999999999987766654
No 361
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.24 E-value=1.2e+02 Score=18.62 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=10.2
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 136 SLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
++.+++..-|+.|+..+...++..|
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3333333344444444444444433
No 362
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.81 E-value=4.6e+02 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 039029 25 RLEEASRMLEQMKENGLVPTAVTYNTLIDGYC 56 (319)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 56 (319)
+.+++.++|+++++... -....+...++.+.
T Consensus 1122 ~~~~~~~~~~~l~~~~P-~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHP-KHLQANLLLIQNIE 1152 (1354)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCC-ccHHHHHHHHHhhh
Confidence 46778899999987642 24455666666554
No 363
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=25.65 E-value=1.4e+02 Score=23.17 Aligned_cols=77 Identities=4% Similarity=-0.024 Sum_probs=52.7
Q ss_pred HHHHHHHHcCCCcChhhHHHHHHHHHHcCchhHHHHHHHHHhhCCCCCCh-HHH--HHHHH----HHHhcCChHHHHHHH
Q 039029 66 SFRDEMVKQGIMPTASTYNLLIHELLMERKMVEADDMLKEMGEKGIVPDS-ITY--NILIN----GYCRCGNAKKAFSLH 138 (319)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~--~~l~~----~~~~~~~~~~a~~~~ 138 (319)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|..... ..+ .+++. ......+++++..++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 46666777788887788888888888877899999999999987654332 222 22222 223457888888777
Q ss_pred HHHH
Q 039029 139 DEMI 142 (319)
Q Consensus 139 ~~~~ 142 (319)
+.+.
T Consensus 310 ~~~p 313 (345)
T 2qfz_A 310 QNLP 313 (345)
T ss_dssp TSCS
T ss_pred HcCC
Confidence 6553
No 364
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.24 E-value=2.8e+02 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhhc
Q 039029 127 RCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQN 164 (319)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (319)
+.++.+.|+.++..|.+.|..|....-..+..+...-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788888888888888886655444444444443333
No 365
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.15 E-value=4e+02 Score=24.37 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhccCC---hHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhhHHHHHH
Q 039029 14 GSFVSGMCKEGR---LEEASRMLEQMKEN--GLVPTAVTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTASTYNLLIH 88 (319)
Q Consensus 14 ~~li~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (319)
..++...|+.|. .+.|.+.|+..... +.+.++..-..+...-.+.|..+.-..+++...... +..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Q ss_pred HHHHcCchhHHHHHHHHHhhCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhhhcc
Q 039029 89 ELLMERKMVEADDMLKEMGEKGIVPDSITYNILINGYCRCGNAKKAFSLHDEMIHK---GIQPTMLTYTSLIFVLSKQNR 165 (319)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 165 (319)
++....+.....++++................+..........+.|.+.+..=.+. ........+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHhhCCCC
Q 039029 166 MIEADQLFENFLAKGML 182 (319)
Q Consensus 166 ~~~a~~~~~~~~~~~~~ 182 (319)
-++-.+-++.+.+....
T Consensus 847 t~~~~~~~~~f~~~~~~ 863 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMD 863 (909)
T ss_dssp SHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHhhCCc
No 366
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.69 E-value=2e+02 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=9.6
Q ss_pred CChHHHHHHHHHHHHcCCCc
Q 039029 129 GNAKKAFSLHDEMIHKGIQP 148 (319)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~ 148 (319)
.+.+.|+-++.+|.+.|..|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44455555555555444333
No 367
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.41 E-value=62 Score=17.56 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=7.2
Q ss_pred CCcHHHHHHHHHHHHh
Q 039029 198 NGNIERAFSLLKEMDR 213 (319)
Q Consensus 198 ~~~~~~a~~~~~~~~~ 213 (319)
.|+.+.|...+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 3444444444444433
No 368
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.15 E-value=36 Score=21.76 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh---cCchhHHHHHHHHHHhCCCC
Q 039029 235 KVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---NQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 294 (319)
.+++|.+++..|.+.-+.-+. +..||..+..+.. .++. .++|..++..++.
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~e------p~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lg 95 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSE------EQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcC
Confidence 678888888887765433222 2578887776643 2333 5666667666543
No 369
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.94 E-value=2e+02 Score=20.44 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=11.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcc
Q 039029 128 CGNAKKAFSLHDEMIHKGIQPT 149 (319)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~ 149 (319)
-.+.+.|+-.+.+|.+.|..|.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3455555555555555554333
No 370
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=23.61 E-value=79 Score=24.65 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Q 039029 207 LLKEMDRMKVHPDEVTYNTLMHGRCRQGKVEEARRLLDQMKRRGI 251 (319)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 251 (319)
++..+.+.++.|...++..++..+.+.=.++.+.++|+.+...|.
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 555566678888888888888888888889999999999988764
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.46 E-value=1.2e+02 Score=21.82 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHhccCChHHHHHHHHHHHhCCC
Q 039029 17 VSGMCKEGRLEEASRMLEQMKENGL 41 (319)
Q Consensus 17 i~~~~~~~~~~~a~~~~~~~~~~~~ 41 (319)
+...++.|+.+.+..+++.+.+.|.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3444556666665555655555443
No 372
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.13 E-value=1.1e+02 Score=17.09 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 039029 119 NILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVL 160 (319)
Q Consensus 119 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (319)
+.++..++...-.++++..++++.+.| ..+...|..-++.+
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 334444444444455555555555554 23444444444333
No 373
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.05 E-value=1.3e+02 Score=21.29 Aligned_cols=207 Identities=9% Similarity=-0.006 Sum_probs=87.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcChhh--HHHHHHHH
Q 039029 16 FVSGMCKEGRLEEASRMLEQMKENGLVPTA---VTYNTLIDGYCNKGNLEMAFSFRDEMVKQGIMPTAST--YNLLIHEL 90 (319)
Q Consensus 16 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 90 (319)
.+...+..|+.+-+..++ +.|..++. .-+ ..+...+..|+.+-+..+ .+.|..++... -...+...
T Consensus 14 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLV----QAGANIDTCSEDQR-TPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCC-CHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHH----HcCCCcCccCCCCC-CHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCcHHHHH
Confidence 455566778876544444 44443332 112 233444566776544433 44443332211 11223344
Q ss_pred HHcCchhHHHHHHHHHhhCC-CCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHH--HHHHHHHHHhhhc
Q 039029 91 LMERKMVEADDMLKEMGEKG-IVP---DSITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTML--TYTSLIFVLSKQN 164 (319)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 164 (319)
+..|+.+-+. .+.+.+ ..+ +..-. +.+...+..|+.+- ++.+.+.|..++.. .-...+......|
T Consensus 85 ~~~~~~~~~~----~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 85 AKKGHYEVVQ----YLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDL----VKLLLSKGSDINIRDNEENICLHWAAFSG 155 (237)
T ss_dssp HHTTCHHHHH----HHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHcCCHHHHH----HHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence 4556655443 333333 111 11111 22333445566543 34444444333221 0111223333455
Q ss_pred cHHHHHHHHHHHhhCCCCccHHH--HHHHHHHHhcCCcHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHcCCcHHHHH
Q 039029 165 RMIEADQLFENFLAKGMLPDIVM--FNALIDGHCTNGNIERAFSLLKEMDRMKVHPDEV--TYNTLMHGRCRQGKVEEAR 240 (319)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 240 (319)
+.+- ++.+.+.|..++... -.+.+...+..|+.+-+.-+ .+.|..++.. .-..-+......|+...+.
T Consensus 156 ~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~gad~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 156 CVDI----AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF----LSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp CHHH----HHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTTCCTTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred CHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH----HHcCCCCCccCCCCCCHHHHHHHHHHHHHHH
Confidence 5543 333444443332110 01223334456665544333 3444333321 1122334445677777777
Q ss_pred HHHHHHHH
Q 039029 241 RLLDQMKR 248 (319)
Q Consensus 241 ~~~~~~~~ 248 (319)
++.+.+.+
T Consensus 228 ~l~~~l~d 235 (237)
T 3b7b_A 228 QMSKALQD 235 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777665
No 374
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.50 E-value=85 Score=21.12 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcccCcchhhHHHHHHHHHh---cCchhHHHHHHHHHHhCCCC
Q 039029 234 GKVEEARRLLDQMKRRGIKPDHISFNPTRLTYNALIQGLCK---NQEGDLAEELLREMVSKGIT 294 (319)
Q Consensus 234 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 294 (319)
..+++|.+++..|++.-+.-+.+ ..||..+..+.. .++. .++|+.+...++.
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep------~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lg 126 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEE------QRFNNFLKALQEKVEIKQL---NHFWEIVVQDGIT 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS------HHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcc
Confidence 36888888888887654332221 578888776542 2333 6666666665443
No 375
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.47 E-value=2.1e+02 Score=20.28 Aligned_cols=23 Identities=13% Similarity=-0.191 Sum_probs=15.3
Q ss_pred HcCchhHHHHHHHHHhhCCCCCC
Q 039029 92 MERKMVEADDMLKEMGEKGIVPD 114 (319)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~ 114 (319)
+-.+++.|+-++-+|++.|-.|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHH
Confidence 44677777777777777765443
No 376
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.34 E-value=26 Score=23.69 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=35.8
Q ss_pred CCCCCCcccCcchhhHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCh
Q 039029 250 GIKPDHISFNPTRLTYNALIQGLCKNQEGDLAEELLREMVSKGITPDD 297 (319)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 297 (319)
++.|+...++|...+...++..+.+.|..++-+.-..+.+++.+.|+.
T Consensus 15 ~~~~~~i~f~p~~at~~~fl~~FF~~~st~e~~~kv~eii~~~~e~s~ 62 (168)
T 3cz6_A 15 NIDPDTISFPPKIATTDLFLPLFFHFGSTRQFMDKLHEVISGDYEPSQ 62 (168)
T ss_dssp CCCGGGSCSSCTTCCTTTBCGGGGGCSSHHHHHHHHHHHHHSCCCTTC
T ss_pred cCCcccCCCCCccccHHHHHHHHHccCCHHHHHHHHHHHHhcccChhh
Confidence 567887778887777777777888887777777777777776666654
No 377
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.26 E-value=2.2e+02 Score=20.45 Aligned_cols=24 Identities=0% Similarity=-0.003 Sum_probs=12.5
Q ss_pred HHHHcCCcHHHHHHHHHHHHH---cCCCCCC
Q 039029 228 HGRCRQGKVEEARRLLDQMKR---RGIKPDH 255 (319)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 255 (319)
...+..|+.+ +.+.+++ .|..++.
T Consensus 145 ~~A~~~g~~~----~v~~Ll~~~~~ga~~~~ 171 (260)
T 3jxi_A 145 SLAACTNQPH----IVHYLTENGHKQADLRR 171 (260)
T ss_dssp HHHHHTTCHH----HHHHHHHCSSCCCCTTC
T ss_pred HHHHHcCCHH----HHHHHHhccccCCCCcc
Confidence 3344566654 4445555 5555554
No 378
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.06 E-value=97 Score=18.01 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHh
Q 039029 266 NALIQGLCKNQEGDLAEELLREMVS 290 (319)
Q Consensus 266 ~~l~~~~~~~g~~~~A~~~~~~~~~ 290 (319)
..+.+-|+..|+++.|..+|+-.++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567788999999999998887765
No 379
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.70 E-value=2.1e+02 Score=19.83 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCccHHHHHHHHHHHhhh
Q 039029 115 SITYNILINGYCRCGNAKKAFSLHDEMIHKGIQPTMLTYTSLIFVLSKQ 163 (319)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (319)
...++.++..++.-.-.++++..+.+....| ..+..+|..-++.+++.
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3456667777777667777777777777776 34666666655555543
No 380
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=20.30 E-value=1.3e+02 Score=17.03 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHhC-CCCCChHHHHHHHHHhhhcchhh
Q 039029 277 EGDLAEELLREMVSK-GITPDDNTYFSLIEGIASVDKAA 314 (319)
Q Consensus 277 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 314 (319)
..++|...|.+|+.. ++. ...+|...+..+..-.++.
T Consensus 13 t~eea~~~F~~LL~e~~V~-~~~tWe~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVP-SNASWEQAMKMIINDPRYS 50 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCC-TTCCHHHHHHHHHTSGGGG
T ss_pred CHHHHHHHHHHHHHHcCcC-CCCCHHHHHHHHccCcccc
Confidence 457889999998875 444 4467888887766554443
Done!