BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039031
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CIK8|RFWD3_MOUSE E3 ubiquitin-protein ligase RFWD3 OS=Mus musculus GN=Rfwd3 PE=2
SV=1
Length = 774
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84
+C+ICLE T+ GD + L+CGH F CI + +CP C K K
Sbjct: 287 TCTICLEQWTNAGDHRISALRCGHLFGFRCISKWLKGQ-TRKCPQCNKKAK 336
>sp|Q6PCD5|RFWD3_HUMAN E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1
SV=3
Length = 774
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+C+ICLE T+ GD + L+CGH F CI + + +CP C K
Sbjct: 286 TCTICLEQWTNAGDHRLSALRCGHLFGYRCISTWLKGQ-VRKCPQCNK 332
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84
+C+IC E T+ GD + L+CGH F CI + A +CP C K K
Sbjct: 286 TCTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQ-ARKCPQCNKKAK 335
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 35 CSICL-ELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80
CS+CL E D+ R K CGH FH+DCI + F S+ + CP CR
Sbjct: 113 CSVCLSEFEEDDEGRVLPK--CGHVFHVDCIDTWFRSRSS--CPLCR 155
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80
+ C++CL + D GD++ +C H FH+DCI F S CP CR
Sbjct: 118 LECAVCLSDLVD-GDKARVLPRCNHGFHVDCIDMWFQSHST--CPLCR 162
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 33 VSCSICL-ELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85
+ CSICL ELV GD++ +C H FH++CI F S CP CR G
Sbjct: 125 LECSICLSELV--KGDKARLLPKCNHSFHVECIDMWFQSHST--CPICRNTVLG 174
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80
V+C IC+E++ D + CGH F L CI + +QCP C+
Sbjct: 14 VTCPICMEILQDP-----VTIDCGHNFCLQCISQVGKTSEKIQCPLCK 56
>sp|Q61010|DTX1_MOUSE E3 ubiquitin-protein ligase DTX1 OS=Mus musculus GN=Dtx1 PE=1 SV=2
Length = 627
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 16/64 (25%)
Query: 35 CSICLE-LVTDNGDRSWAKLQ------------CGHQFHLDCIGSAF---NSKGAMQCPN 78
C+IC+E LVT +G + + CGH +HL C+ + + N G++QCP
Sbjct: 418 CTICMERLVTASGYEGVLRNKSVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 477
Query: 79 CRKI 82
C+ I
Sbjct: 478 CKAI 481
>sp|Q86Y01|DTX1_HUMAN E3 ubiquitin-protein ligase DTX1 OS=Homo sapiens GN=DTX1 PE=1 SV=1
Length = 620
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 16/64 (25%)
Query: 35 CSICLE-LVTDNGDRSWAKLQ------------CGHQFHLDCIGSAF---NSKGAMQCPN 78
C+IC+E LVT +G + + CGH +HL C+ + + N G++QCP
Sbjct: 411 CTICMERLVTASGYEGVLRHKGVRPELVGRLGRCGHMYHLLCLVAMYSNGNKDGSLQCPT 470
Query: 79 CRKI 82
C+ I
Sbjct: 471 CKAI 474
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQWLYSNG 92
+ C ICL+++ ++ +C H+F DCI +A S G +CP CRK + +
Sbjct: 44 LMCPICLDML----KKTMTTKECLHRFCSDCIVTALRS-GNKECPTCRK----KLVSKRS 94
Query: 93 CRSFPEFSM 101
R+ P F +
Sbjct: 95 LRADPNFDL 103
>sp|Q9BWF2|TRAIP_HUMAN TRAF-interacting protein OS=Homo sapiens GN=TRAIP PE=1 SV=1
Length = 469
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQWLYSNGCR 94
C+IC + + R A + CGH FHL C+ F + + CP CR I+ G+ N
Sbjct: 7 CTICSDFF--DHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR-IQVGKRTIIN--- 60
Query: 95 SFPEFSMDDWTHDEDLYDLSY 115
+ D +E++ D +
Sbjct: 61 ---KLFFDLAQEEENVLDAEF 78
>sp|Q8VIG6|TRAIP_MOUSE TRAF-interacting protein OS=Mus musculus GN=Traip PE=1 SV=2
Length = 470
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQWLYSNGCR 94
C+IC + + R A + CGH FHL C+ F + + CP CR I+ G+ N
Sbjct: 7 CTICSDFF--DHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCR-IQVGKKTIIN--- 60
Query: 95 SFPEFSMDDWTHDEDLYDLSY 115
+ D +E++ D +
Sbjct: 61 ---KLFFDLAQEEENVLDAEF 78
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 49 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS-GNKECPTCRK 92
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1
SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 49 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS-GNKECPTCRK 92
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 49 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS-GNKECPTCRK 92
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2
SV=1
Length = 336
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 49 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS-GNKECPTCRK 92
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 46 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 89
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1
PE=3 SV=2
Length = 406
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 46 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 89
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 46 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 89
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 46 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 89
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2
PE=2 SV=1
Length = 308
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 49 LMCPICLDMLKN----TMTTKECLHRFCADCIITALRS-GNKECPTCRK 92
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1
PE=3 SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 17 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 60
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 17 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 60
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 17 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 60
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 17 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 60
>sp|Q9Y2E6|DTX4_HUMAN E3 ubiquitin-protein ligase DTX4 OS=Homo sapiens GN=DTX4 PE=1 SV=2
Length = 619
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 14/62 (22%)
Query: 35 CSICLELVTD----NGDRSWAKL-------QCGHQFHLDCIGSAFNS---KGAMQCPNCR 80
C+IC+E +T G + K +CGH +H+ C+ + +N+ G++QCP C+
Sbjct: 409 CTICMERLTAPSGYKGPQPTVKPDLVGKLSRCGHVYHIYCLVAMYNNGNKDGSLQCPTCK 468
Query: 81 KI 82
I
Sbjct: 469 TI 470
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 46 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 89
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 24 DSRGKSFRTV-SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
D K F+ V C +CL + D GD++ C H FH++CI S S CP CRK
Sbjct: 76 DFNTKDFKYVLECVVCLSELAD-GDKARVLPSCDHWFHVECIDSWLQSNST--CPICRK 131
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
+ C ICL+++ + + +C H+F DCI +A S G +CP CRK
Sbjct: 45 LMCPICLDMLKN----TMTTKECLHRFCSDCIVTALRS-GNKECPTCRK 88
>sp|O22255|ATL64_ARATH RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2
SV=1
Length = 227
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 35 CSICL-ELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80
CS+CL E ++ R K CGH FH+DCI + F S+ CP CR
Sbjct: 108 CSVCLSEFEEEDEGRLLPK--CGHSFHVDCIDTWFRSRST--CPLCR 150
>sp|Q6PDK8|DTX4_MOUSE E3 ubiquitin-protein ligase DTX4 OS=Mus musculus GN=Dtx4 PE=1 SV=2
Length = 616
Score = 39.3 bits (90), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 14/62 (22%)
Query: 35 CSICLELVTD----NGDRSWAKL-------QCGHQFHLDCIGSAFNS---KGAMQCPNCR 80
C+IC+E +T G + K +CGH +H+ C+ + +N+ G++QCP C+
Sbjct: 406 CTICMERLTAPSGYKGPQPTVKPDLVGKLSRCGHIYHIYCLVAMYNNGNKDGSLQCPTCK 465
Query: 81 KI 82
I
Sbjct: 466 TI 467
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ C +CLE + D + L C H F C+ S+G ++CP CR +
Sbjct: 10 LECPVCLERL----DATAKVLPCQHTFCRRCLLGIVGSRGELRCPECRTL 55
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1
Length = 609
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
++C +C+EL D + CGH F CI A+ + + CP CR+
Sbjct: 143 LTCPLCVELFKDP-----VMVACGHNFCRSCIDKAWEGQSSFACPECRE 186
>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC2A9.04c PE=4 SV=1
Length = 741
Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
++C IC + + +N ++ K+ CGH F +C+ + CP CRK
Sbjct: 105 LTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWL--ENHCTCPLCRK 151
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAM-----QCPNCRKIE 83
C + + + D DR + +CGH H C S NS+ M +CP CR E
Sbjct: 687 CQLEDQGICDPNDR-FVHFECGHSVHERCQQSTSNSENQMDEEIGECPKCRNEE 739
>sp|Q8TEJ3|SH3R3_HUMAN SH3 domain-containing RING finger protein 3 OS=Homo sapiens
GN=SH3RF3 PE=1 SV=2
Length = 882
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ CS+CLE + D + L C H F C+ S S+ ++CP CR +
Sbjct: 55 LECSVCLERL----DTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRIL 100
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ V C+ICL GD QCGH FH+ CI + S + CP+CR+I
Sbjct: 100 KLVECAICLTEFA-AGDELRVLPQCGHGFHVSCIDTWLGSHSS--CPSCRQI 148
>sp|Q8C120|SH3R3_MOUSE SH3 domain-containing RING finger protein 3 OS=Mus musculus
GN=Sh3rf3 PE=2 SV=2
Length = 878
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ CS+CLE + D + L C H F C+ S S+ ++CP CR +
Sbjct: 50 LECSVCLERL----DTTAKVLPCQHTFCRRCLESIVCSRHELRCPECRIL 95
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 27 GKSFRTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAF---NSKGA-MQCPNCR 80
KSF+++ CSIC T+ D A +CGH F C+ NSK ++CPNCR
Sbjct: 906 NKSFQSLECSIC---TTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCR 961
>sp|Q77J49|UB222_WSSVS RING finger containing E3 ubiquitin-protein ligase WSV222 OS=White
spot syndrome virus (isolate Shrimp/China/Tongan/1996)
GN=WSV222 PE=1 SV=1
Length = 844
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 35 CSICLELVTDNGDR------SWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
C +C V ++ + SW ++ C H H +C+ + G +QCP CR+
Sbjct: 308 CGVCATSVEEDENEGKTTSLSWYQMNCKHYIHCECLMGMCAAAGNVQCPMCRE 360
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 3 LGSNDDDDLVVDDGDGDVGDCDSRGKSFRTVS------CSICL-ELVTDNGDRSWAKLQC 55
L +DDDD + + + +R ++ CS+C+ + VT N R +L C
Sbjct: 594 LNESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLR---QLPC 650
Query: 56 GHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQWLYSNG 92
H+FH+ CI + CP CR+ G + +NG
Sbjct: 651 MHEFHIHCIDRWLSENCT--CPICRQPVLGSNIANNG 685
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 3 LGSNDDDDLVVDDGDGDVGDCDSR--GKSFRTVSCSICLELVTDNGDRSWAKLQCGHQFH 60
L + DDDD + + +R G++ +CS+C+ T+ KL C H++H
Sbjct: 669 LLNEDDDDQPRGLTKEQIDNLSTRNYGENDALKTCSVCITEYTEGN--KLRKLPCSHEYH 726
Query: 61 LDCIGSAFNSKGAMQCPNCRK 81
+ CI + CP CR+
Sbjct: 727 IHCIDRWLSENST--CPICRR 745
>sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
Length = 194
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 32 TVSCSICLE---LVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
TVSC IC++ + NG R +CGH F C+ + K A CP CRK
Sbjct: 133 TVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSL--KNANTCPTCRK 182
>sp|Q61510|TRI25_MOUSE E3 ubiquitin/ISG15 ligase TRIM25 OS=Mus musculus GN=Trim25 PE=2
SV=2
Length = 634
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKG-AMQCPNCRKIEKGQ-WLYS 90
+SCS+CLEL + CGH F + C+ + +G +CP CRK+ + + L
Sbjct: 11 LSCSVCLELFKEP-----VTTPCGHNFCMSCLDETWVVQGPPYRCPQCRKVYQVRPQLQK 65
Query: 91 NG--CRSFPEFS--------MDDWT 105
N C +F +DDWT
Sbjct: 66 NTVMCAVVEQFLQAEQARTPVDDWT 90
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ C +CLE + D S L C H F C+ S+ ++CP CR +
Sbjct: 10 LECPVCLERL----DASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTL 55
>sp|O88846|RNF4_RAT E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1
SV=1
Length = 194
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 32 TVSCSICLE---LVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
TVSC IC++ + NG R +CGH F C+ + K A CP CRK
Sbjct: 133 TVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSL--KNANTCPTCRK 182
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 3 LGSNDDDDLVVDDGDGDVGDCDSR--GKSFRTVSCSICLELVTDNGDRSWAKLQCGHQFH 60
L + DDDD + + +R G++ +CS+C+ T+ KL C H++H
Sbjct: 551 LLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGN--KLRKLPCSHEYH 608
Query: 61 LDCIGSAFNSKGAMQCPNCRK 81
+ CI + CP CR+
Sbjct: 609 VHCIDRWLSENST--CPICRR 627
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ C +CLE + D S L C H F C+ S+ ++CP CR +
Sbjct: 10 LECPVCLERL----DASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTL 55
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis
GN=sh3rf1 PE=2 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82
+ C +CLE + D S L C H F C+ +S+ ++CP CR +
Sbjct: 10 LECPVCLERL----DASAKVLPCQHTFCKRCLLGIVSSRNELRCPECRTL 55
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 3 LGSNDDDDLVVDDGDGDVGDCDSR--GKSFRTVSCSICLELVTDNGDRSWAKLQCGHQFH 60
L + DDDD + + +R G++ +CS+C+ T+ KL C H++H
Sbjct: 534 LLNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGN--KLRKLPCSHEYH 591
Query: 61 LDCIGSAFNSKGAMQCPNCRK 81
+ CI + CP CR+
Sbjct: 592 IHCIDRWLSENST--CPICRR 610
>sp|P78317|RNF4_HUMAN E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1
Length = 190
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 32 TVSCSICLE---LVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81
TVSC IC++ + NG R +CGH F C+ + K A CP CRK
Sbjct: 129 TVSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSL--KNANTCPTCRK 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,783,487
Number of Sequences: 539616
Number of extensions: 8356412
Number of successful extensions: 20912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 20748
Number of HSP's gapped (non-prelim): 366
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)