Query 039031
Match_columns 452
No_of_seqs 221 out of 1447
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 99.0 2.2E-10 4.8E-15 109.0 5.8 50 31-85 17-80 (193)
2 PF15227 zf-C3HC4_4: zinc fing 98.9 7.3E-10 1.6E-14 81.3 3.1 40 35-79 1-42 (42)
3 PF13639 zf-RING_2: Ring finge 98.8 1.8E-09 3.8E-14 78.9 1.9 43 34-80 2-44 (44)
4 KOG0823 Predicted E3 ubiquitin 98.8 4.2E-09 9.1E-14 102.3 4.4 50 31-85 46-96 (230)
5 smart00504 Ubox Modified RING 98.7 1.6E-08 3.6E-13 77.8 4.5 47 32-85 1-47 (63)
6 KOG0317 Predicted E3 ubiquitin 98.7 9.9E-09 2.1E-13 102.5 3.2 49 31-86 238-286 (293)
7 TIGR00599 rad18 DNA repair pro 98.7 8.9E-09 1.9E-13 107.5 2.9 61 31-98 25-90 (397)
8 PF00097 zf-C3HC4: Zinc finger 98.6 2.3E-08 5E-13 71.5 2.8 41 35-79 1-41 (41)
9 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.5E-08 5.4E-13 74.8 2.7 47 31-84 1-48 (50)
10 PHA02929 N1R/p28-like protein; 98.6 2.8E-08 6E-13 97.6 3.8 52 31-84 173-227 (238)
11 KOG0320 Predicted E3 ubiquitin 98.6 4.4E-08 9.6E-13 92.2 4.8 50 31-85 130-179 (187)
12 KOG0287 Postreplication repair 98.5 2.1E-08 4.6E-13 102.1 1.3 61 31-98 22-87 (442)
13 PF13923 zf-C3HC4_2: Zinc fing 98.5 5.2E-08 1.1E-12 69.7 2.5 39 35-79 1-39 (39)
14 PF12678 zf-rbx1: RING-H2 zinc 98.5 1E-07 2.2E-12 77.4 3.5 46 33-80 20-73 (73)
15 KOG4628 Predicted E3 ubiquitin 98.5 6.9E-08 1.5E-12 99.2 2.3 47 33-82 230-276 (348)
16 cd00162 RING RING-finger (Real 98.4 1.7E-07 3.7E-12 65.8 3.5 44 34-82 1-44 (45)
17 PHA02926 zinc finger-like prot 98.4 1.6E-07 3.4E-12 91.4 3.5 54 31-84 169-230 (242)
18 PF04564 U-box: U-box domain; 98.3 2.9E-07 6.3E-12 74.5 2.8 58 31-94 3-65 (73)
19 KOG2177 Predicted E3 ubiquitin 98.3 1.9E-07 4.2E-12 86.5 2.0 63 31-100 12-77 (386)
20 smart00184 RING Ring finger. E 98.3 5.2E-07 1.1E-11 61.1 3.3 39 35-79 1-39 (39)
21 KOG2164 Predicted E3 ubiquitin 98.3 3.2E-07 6.9E-12 97.6 2.8 49 32-85 186-237 (513)
22 PF13445 zf-RING_UBOX: RING-ty 98.3 4E-07 8.7E-12 67.5 2.2 41 35-77 1-43 (43)
23 PF14634 zf-RING_5: zinc-RING 98.2 9.1E-07 2E-11 65.0 3.4 44 34-81 1-44 (44)
24 COG5243 HRD1 HRD ubiquitin lig 98.2 5.8E-07 1.3E-11 92.7 3.1 51 31-83 286-344 (491)
25 COG5432 RAD18 RING-finger-cont 98.2 7.4E-07 1.6E-11 89.6 2.1 47 31-84 24-70 (391)
26 COG5574 PEX10 RING-finger-cont 98.1 1.2E-06 2.7E-11 86.8 3.2 51 31-86 214-264 (271)
27 COG5540 RING-finger-containing 98.1 1.8E-06 3.8E-11 87.3 2.6 51 31-84 322-372 (374)
28 PF12861 zf-Apc11: Anaphase-pr 98.0 5.5E-06 1.2E-10 69.9 3.8 36 49-84 46-82 (85)
29 KOG0802 E3 ubiquitin ligase [P 98.0 2.9E-06 6.3E-11 91.8 2.5 50 31-82 290-339 (543)
30 TIGR00570 cdk7 CDK-activating 97.9 8.8E-06 1.9E-10 82.8 4.4 52 32-85 3-55 (309)
31 KOG0311 Predicted E3 ubiquitin 97.9 2.1E-06 4.6E-11 88.0 -1.2 49 31-84 42-90 (381)
32 PF14835 zf-RING_6: zf-RING of 97.8 6.5E-06 1.4E-10 66.2 0.5 54 31-92 6-64 (65)
33 KOG1734 Predicted RING-contain 97.7 1E-05 2.3E-10 80.7 1.6 63 24-86 216-283 (328)
34 KOG4159 Predicted E3 ubiquitin 97.6 5.5E-05 1.2E-09 79.5 4.2 123 31-167 83-227 (398)
35 KOG1039 Predicted E3 ubiquitin 97.6 3.8E-05 8.2E-10 79.4 2.4 54 31-84 160-221 (344)
36 KOG1645 RING-finger-containing 97.5 2.1E-05 4.5E-10 82.2 0.5 52 33-84 5-56 (463)
37 KOG0978 E3 ubiquitin ligase in 97.4 4.5E-05 9.8E-10 84.6 1.2 50 31-86 642-691 (698)
38 KOG0824 Predicted E3 ubiquitin 97.3 0.00012 2.7E-09 74.1 2.6 48 32-85 7-54 (324)
39 COG5194 APC11 Component of SCF 97.2 0.00032 7E-09 58.8 3.3 49 34-84 33-81 (88)
40 PF11789 zf-Nse: Zinc-finger o 97.2 0.00018 3.8E-09 56.4 1.6 43 32-78 11-53 (57)
41 PF11793 FANCL_C: FANCL C-term 97.1 0.00017 3.7E-09 58.4 0.8 53 32-84 2-66 (70)
42 KOG2879 Predicted E3 ubiquitin 97.0 0.0004 8.6E-09 69.7 2.8 49 31-83 238-286 (298)
43 KOG0297 TNF receptor-associate 97.0 0.00044 9.5E-09 72.5 3.2 48 31-85 20-68 (391)
44 KOG2660 Locus-specific chromos 97.0 0.0002 4.3E-09 73.3 0.6 48 31-84 14-61 (331)
45 KOG4265 Predicted E3 ubiquitin 96.9 0.00072 1.6E-08 69.9 4.0 46 32-84 290-336 (349)
46 COG5152 Uncharacterized conser 96.9 0.0003 6.5E-09 67.9 1.0 47 32-85 196-242 (259)
47 KOG0828 Predicted E3 ubiquitin 96.9 0.00049 1.1E-08 73.7 2.4 53 31-84 570-634 (636)
48 COG5219 Uncharacterized conser 96.9 0.00037 8.1E-09 79.0 1.6 50 31-83 1468-1522(1525)
49 KOG4172 Predicted E3 ubiquitin 96.9 0.00026 5.7E-09 55.6 0.3 47 33-85 8-55 (62)
50 KOG0825 PHD Zn-finger protein 96.8 0.00066 1.4E-08 75.8 3.0 50 31-84 122-171 (1134)
51 KOG0804 Cytoplasmic Zn-finger 96.8 0.0006 1.3E-08 72.3 2.5 49 31-84 174-222 (493)
52 smart00744 RINGv The RING-vari 96.8 0.0013 2.8E-08 50.0 3.1 44 34-80 1-49 (49)
53 KOG0827 Predicted E3 ubiquitin 96.7 0.0009 1.9E-08 70.0 2.3 47 33-80 5-52 (465)
54 KOG1785 Tyrosine kinase negati 96.6 0.00077 1.7E-08 70.7 1.5 47 34-85 371-417 (563)
55 KOG1493 Anaphase-promoting com 96.6 0.00069 1.5E-08 56.5 0.5 36 49-84 45-81 (84)
56 KOG1002 Nucleotide excision re 96.2 0.0021 4.5E-08 69.5 1.9 50 31-85 535-587 (791)
57 KOG1813 Predicted E3 ubiquitin 95.9 0.0023 5E-08 64.9 0.4 47 32-85 241-287 (313)
58 KOG2930 SCF ubiquitin ligase, 95.9 0.0033 7.1E-08 55.2 1.2 48 33-82 47-106 (114)
59 COG5222 Uncharacterized conser 95.9 0.0043 9.3E-08 63.3 2.1 44 32-81 274-318 (427)
60 KOG1941 Acetylcholine receptor 95.9 0.0032 6.9E-08 66.1 1.2 50 32-82 365-414 (518)
61 KOG3002 Zn finger protein [Gen 95.7 0.0087 1.9E-07 61.1 3.7 53 31-94 47-103 (299)
62 PF07800 DUF1644: Protein of u 95.2 0.014 3E-07 54.7 2.8 54 31-89 1-96 (162)
63 PF14570 zf-RING_4: RING/Ubox 95.1 0.018 4E-07 44.0 2.6 47 35-83 1-47 (48)
64 KOG0826 Predicted E3 ubiquitin 94.6 0.025 5.3E-07 58.4 2.9 47 31-83 299-345 (357)
65 KOG4692 Predicted E3 ubiquitin 94.5 0.02 4.4E-07 59.7 2.2 47 31-84 421-467 (489)
66 KOG4275 Predicted E3 ubiquitin 94.5 0.0061 1.3E-07 62.0 -1.6 41 32-83 300-341 (350)
67 KOG1001 Helicase-like transcri 94.5 0.015 3.2E-07 65.3 1.1 47 33-85 455-501 (674)
68 KOG3800 Predicted E3 ubiquitin 94.1 0.037 8.1E-07 56.2 3.1 49 34-84 2-51 (300)
69 KOG1428 Inhibitor of type V ad 94.0 0.039 8.4E-07 65.6 3.2 53 31-85 3485-3545(3738)
70 KOG4739 Uncharacterized protei 93.7 0.01 2.2E-07 58.7 -1.7 46 33-85 4-49 (233)
71 KOG1571 Predicted E3 ubiquitin 93.6 0.032 7E-07 58.0 1.5 43 31-83 304-346 (355)
72 COG5236 Uncharacterized conser 93.5 0.067 1.5E-06 55.8 3.7 55 24-83 53-107 (493)
73 KOG4185 Predicted E3 ubiquitin 93.1 0.069 1.5E-06 53.2 2.9 50 33-83 4-54 (296)
74 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.074 1.6E-06 52.8 3.0 51 31-85 112-162 (260)
75 KOG4367 Predicted Zn-finger pr 92.6 0.068 1.5E-06 57.1 2.3 35 31-70 3-37 (699)
76 KOG1814 Predicted E3 ubiquitin 92.4 0.073 1.6E-06 56.4 2.1 50 31-82 183-238 (445)
77 COG5220 TFB3 Cdk activating ki 92.4 0.035 7.6E-07 55.4 -0.2 53 31-84 9-64 (314)
78 PHA03096 p28-like protein; Pro 92.3 0.08 1.7E-06 53.8 2.2 50 33-82 179-232 (284)
79 KOG4445 Uncharacterized conser 91.8 0.052 1.1E-06 55.6 0.2 53 31-85 114-187 (368)
80 KOG3039 Uncharacterized conser 91.4 0.15 3.3E-06 51.1 2.9 52 31-85 220-271 (303)
81 KOG1940 Zn-finger protein [Gen 91.2 0.18 4E-06 51.1 3.4 47 32-81 158-204 (276)
82 KOG4362 Transcriptional regula 90.8 0.065 1.4E-06 60.0 -0.3 48 31-83 20-68 (684)
83 KOG3161 Predicted E3 ubiquitin 90.4 0.11 2.5E-06 57.7 1.2 45 31-81 10-54 (861)
84 KOG3970 Predicted E3 ubiquitin 90.3 0.22 4.7E-06 49.5 2.9 50 33-85 51-106 (299)
85 PF10367 Vps39_2: Vacuolar sor 90.3 0.1 2.2E-06 43.7 0.5 32 31-65 77-108 (109)
86 KOG2114 Vacuolar assembly/sort 89.9 0.17 3.6E-06 57.9 1.9 45 29-82 837-881 (933)
87 PHA02825 LAP/PHD finger-like p 89.9 0.36 7.9E-06 45.5 3.8 48 31-84 7-59 (162)
88 KOG2932 E3 ubiquitin ligase in 89.7 0.14 3.1E-06 52.7 1.1 44 33-84 91-134 (389)
89 COG5175 MOT2 Transcriptional r 89.6 0.22 4.7E-06 52.0 2.4 51 33-85 15-65 (480)
90 PF14447 Prok-RING_4: Prokaryo 89.6 0.14 3.1E-06 40.2 0.8 44 32-84 7-50 (55)
91 PF08746 zf-RING-like: RING-li 89.2 0.33 7.2E-06 36.0 2.5 43 35-79 1-43 (43)
92 PF02891 zf-MIZ: MIZ/SP-RING z 87.8 0.52 1.1E-05 36.0 2.8 46 32-82 2-50 (50)
93 PF12906 RINGv: RING-variant d 87.2 0.38 8.2E-06 36.2 1.7 42 35-79 1-47 (47)
94 KOG1952 Transcription factor N 87.1 0.39 8.5E-06 55.0 2.5 52 31-83 190-246 (950)
95 KOG1815 Predicted E3 ubiquitin 86.3 0.25 5.4E-06 52.7 0.4 50 31-84 69-126 (444)
96 KOG0825 PHD Zn-finger protein 86.3 0.59 1.3E-05 53.3 3.3 67 17-83 81-153 (1134)
97 PF05290 Baculo_IE-1: Baculovi 85.2 0.69 1.5E-05 42.6 2.6 53 32-85 80-133 (140)
98 KOG2817 Predicted E3 ubiquitin 84.9 0.97 2.1E-05 47.9 4.0 49 31-82 333-383 (394)
99 PHA02862 5L protein; Provision 84.7 0.78 1.7E-05 42.8 2.8 46 33-84 3-53 (156)
100 PF10272 Tmpp129: Putative tra 83.0 0.79 1.7E-05 48.2 2.4 30 55-84 311-351 (358)
101 KOG1812 Predicted E3 ubiquitin 82.6 0.63 1.4E-05 49.1 1.5 52 31-83 145-202 (384)
102 PLN02638 cellulose synthase A 82.1 1.8 3.9E-05 51.2 4.9 56 28-84 13-70 (1079)
103 PF05883 Baculo_RING: Baculovi 82.0 0.63 1.4E-05 42.7 1.1 36 32-69 26-67 (134)
104 KOG0298 DEAD box-containing he 81.8 0.52 1.1E-05 56.1 0.6 46 31-82 1152-1197(1394)
105 KOG3579 Predicted E3 ubiquitin 81.5 0.58 1.3E-05 47.9 0.7 43 31-78 267-316 (352)
106 KOG3268 Predicted E3 ubiquitin 78.0 1.9 4.2E-05 41.7 3.0 52 33-84 166-228 (234)
107 PLN02189 cellulose synthase 77.8 3.4 7.3E-05 48.8 5.3 58 26-84 28-87 (1040)
108 PLN02436 cellulose synthase A 75.7 3.6 7.8E-05 48.7 4.8 58 26-84 30-89 (1094)
109 PLN02400 cellulose synthase 72.5 3.9 8.4E-05 48.5 4.1 58 26-84 30-89 (1085)
110 PF05605 zf-Di19: Drought indu 71.2 2.3 4.9E-05 32.5 1.3 42 31-84 1-42 (54)
111 KOG1100 Predicted E3 ubiquitin 70.4 1.9 4.1E-05 42.0 0.9 38 35-83 161-199 (207)
112 KOG0827 Predicted E3 ubiquitin 69.6 0.8 1.7E-05 48.7 -2.0 50 33-85 197-246 (465)
113 KOG2231 Predicted E3 ubiquitin 69.1 3.8 8.3E-05 46.4 3.0 75 34-113 2-83 (669)
114 KOG3899 Uncharacterized conser 69.0 2.9 6.2E-05 43.2 1.8 30 55-84 325-365 (381)
115 KOG0309 Conserved WD40 repeat- 67.0 3.4 7.4E-05 47.3 2.1 42 32-78 1028-1069(1081)
116 KOG3039 Uncharacterized conser 66.6 3.5 7.6E-05 41.7 1.9 33 34-71 45-77 (303)
117 PF03854 zf-P11: P-11 zinc fin 66.4 2.4 5.1E-05 32.8 0.5 32 51-84 14-46 (50)
118 PLN02915 cellulose synthase A 65.2 7.8 0.00017 46.0 4.6 54 30-84 13-68 (1044)
119 PF14569 zf-UDP: Zinc-binding 62.7 11 0.00024 32.0 3.8 55 29-84 6-62 (80)
120 PF14446 Prok-RING_1: Prokaryo 62.7 6.3 0.00014 31.1 2.2 34 32-66 5-38 (54)
121 KOG2034 Vacuolar sorting prote 59.9 4.8 0.0001 46.7 1.7 35 32-69 817-851 (911)
122 KOG4185 Predicted E3 ubiquitin 56.7 2.5 5.5E-05 42.2 -1.1 50 32-82 207-265 (296)
123 KOG1609 Protein involved in mR 54.2 10 0.00022 37.5 2.7 53 31-84 77-134 (323)
124 smart00249 PHD PHD zinc finger 54.1 5.2 0.00011 27.9 0.5 44 34-79 1-47 (47)
125 COG5183 SSM4 Protein involved 48.7 16 0.00036 42.4 3.4 47 32-83 12-65 (1175)
126 KOG2068 MOT2 transcription fac 47.9 14 0.00029 38.7 2.5 49 33-84 250-298 (327)
127 COG5109 Uncharacterized conser 47.5 13 0.00029 38.9 2.4 52 29-82 332-385 (396)
128 PLN02195 cellulose synthase A 46.4 15 0.00033 43.3 2.9 51 33-84 7-59 (977)
129 KOG0801 Predicted E3 ubiquitin 45.6 7.4 0.00016 37.3 0.2 29 31-61 176-204 (205)
130 KOG2169 Zn-finger transcriptio 44.2 20 0.00043 40.5 3.3 49 31-84 305-356 (636)
131 PF00628 PHD: PHD-finger; Int 41.3 3.5 7.6E-05 30.4 -2.2 46 34-81 1-50 (51)
132 PF07191 zinc-ribbons_6: zinc- 39.5 3.1 6.7E-05 34.4 -2.9 41 32-84 1-41 (70)
133 KOG4718 Non-SMC (structural ma 39.3 15 0.00033 36.4 1.3 45 33-83 182-226 (235)
134 COG0068 HypF Hydrogenase matur 39.0 22 0.00048 40.8 2.6 52 31-82 100-182 (750)
135 TIGR00143 hypF [NiFe] hydrogen 35.8 19 0.00042 41.2 1.6 53 31-83 67-150 (711)
136 KOG1812 Predicted E3 ubiquitin 35.2 20 0.00044 38.0 1.5 46 32-79 306-351 (384)
137 KOG3113 Uncharacterized conser 33.7 39 0.00083 34.6 3.1 52 28-84 107-158 (293)
138 PF06906 DUF1272: Protein of u 32.7 54 0.0012 26.3 3.1 44 34-83 7-51 (57)
139 KOG2979 Protein involved in DN 32.3 25 0.00053 35.8 1.5 45 32-80 176-222 (262)
140 KOG3053 Uncharacterized conser 31.5 21 0.00047 36.4 0.9 51 32-83 20-81 (293)
141 PF09986 DUF2225: Uncharacteri 30.5 30 0.00066 33.7 1.8 58 73-139 5-65 (214)
142 PF04710 Pellino: Pellino; In 30.3 17 0.00037 39.0 0.0 51 32-82 277-337 (416)
143 PF10235 Cript: Microtubule-as 29.2 29 0.00063 30.1 1.2 36 32-83 44-79 (90)
144 PF10497 zf-4CXXC_R1: Zinc-fin 28.9 70 0.0015 28.0 3.6 28 56-83 37-71 (105)
145 KOG2807 RNA polymerase II tran 28.5 39 0.00086 35.6 2.2 45 32-80 330-374 (378)
146 PF02318 FYVE_2: FYVE-type zin 28.4 32 0.00069 30.3 1.4 51 31-82 53-103 (118)
147 KOG0824 Predicted E3 ubiquitin 28.4 22 0.00048 37.0 0.4 48 31-84 104-151 (324)
148 PF06844 DUF1244: Protein of u 28.1 34 0.00073 28.2 1.3 13 58-70 11-23 (68)
149 PF14353 CpXC: CpXC protein 27.5 48 0.001 29.2 2.4 49 32-85 1-50 (128)
150 KOG2066 Vacuolar assembly/sort 26.1 25 0.00054 40.8 0.3 47 31-80 783-831 (846)
151 KOG2462 C2H2-type Zn-finger pr 24.6 53 0.0011 33.8 2.3 60 32-91 161-233 (279)
152 PF06676 DUF1178: Protein of u 24.4 32 0.0007 32.2 0.7 23 55-82 10-41 (148)
153 PF07975 C1_4: TFIIH C1-like d 24.2 37 0.0008 26.5 0.9 44 35-80 2-50 (51)
154 smart00647 IBR In Between Ring 23.8 21 0.00045 27.0 -0.6 35 34-68 20-59 (64)
155 cd00065 FYVE FYVE domain; Zinc 22.2 60 0.0013 24.3 1.7 34 33-67 3-36 (57)
156 KOG3799 Rab3 effector RIM1 and 22.2 22 0.00048 33.2 -0.8 15 31-45 64-79 (169)
157 KOG1356 Putative transcription 22.2 23 0.0005 41.2 -0.8 48 33-83 230-281 (889)
158 KOG4443 Putative transcription 21.7 50 0.0011 37.7 1.6 52 31-82 17-71 (694)
159 PF04216 FdhE: Protein involve 20.7 18 0.00039 36.4 -1.8 45 32-82 172-220 (290)
160 COG1655 Uncharacterized protei 20.1 34 0.00073 34.6 -0.1 68 72-148 18-88 (267)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=2.2e-10 Score=108.95 Aligned_cols=50 Identities=30% Similarity=0.641 Sum_probs=42.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--------------CCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--------------KGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--------------kg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +++.|||.||..||..|+.. ++...||+||..+..
T Consensus 17 ~~~~CpICld~~~dP-----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP-----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc-----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 368999999999999 88999999999999999852 234689999998754
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.92 E-value=7.3e-10 Score=81.29 Aligned_cols=40 Identities=38% Similarity=1.038 Sum_probs=31.9
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCC--CCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGA--MQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~--~~CPlC 79 (452)
|+||+++|.+| +.++|||.||..||.+|++.... +.||.|
T Consensus 1 CpiC~~~~~~P-----v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP-----VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE-----EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc-----cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999 99999999999999999986533 589988
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.81 E-value=1.8e-09 Score=78.90 Aligned_cols=43 Identities=44% Similarity=0.964 Sum_probs=35.8
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
.|+||++.+... ..++.++|||.||.+||.+|++.+. .||+||
T Consensus 2 ~C~IC~~~~~~~--~~~~~l~C~H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG--EKVVKLPCGHVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT--SCEEEETTSEEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCC--CeEEEccCCCeeCHHHHHHHHHhCC--cCCccC
Confidence 699999999753 2357888999999999999998764 999997
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.2e-09 Score=102.32 Aligned_cols=50 Identities=28% Similarity=0.651 Sum_probs=44.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCC-CCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKG-AMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg-~~~CPlCRk~~k~ 85 (452)
..+.|.||++..++| +++.|||.||..||.+|+.... ...||+||..+..
T Consensus 46 ~~FdCNICLd~akdP-----VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDP-----VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCC-----EEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 578999999999999 9999999999999999998753 3578999997654
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.70 E-value=1.6e-08 Score=77.85 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=41.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++.|+||++.+.+| +.++|||.||..||..|+..+ ..||.|++.+..
T Consensus 1 ~~~Cpi~~~~~~~P-----v~~~~G~v~~~~~i~~~~~~~--~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDP-----VILPSGQTYERRAIEKWLLSH--GTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCC-----EECCCCCEEeHHHHHHHHHHC--CCCCCCcCCCCh
Confidence 46899999999999 999999999999999999863 489999998643
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.9e-09 Score=102.46 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=44.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
....|.||++...+| ..++|||.||..||.+|...+. .||+||..++.+
T Consensus 238 a~~kC~LCLe~~~~p-----SaTpCGHiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP-----SATPCGHIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCC-----CcCcCcchHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 468999999999999 8999999999999999999775 699999987764
No 7
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=8.9e-09 Score=107.46 Aligned_cols=61 Identities=28% Similarity=0.662 Sum_probs=51.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSFPE 98 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~k~ 98 (452)
..+.|+||++.|.+| ++++|||.||..||..|+... ..||+|+..+.. |..+.++++.++.
T Consensus 25 ~~l~C~IC~d~~~~P-----vitpCgH~FCs~CI~~~l~~~--~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 25 TSLRCHICKDFFDVP-----VLTSCSHTFCSLCIRRCLSNQ--PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccCCCcCchhhhCc-----cCCCCCCchhHHHHHHHHhCC--CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 678999999999999 889999999999999999864 389999997643 6777777776553
No 8
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.61 E-value=2.3e-08 Score=71.51 Aligned_cols=41 Identities=41% Similarity=0.970 Sum_probs=36.2
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
|+||++.+.++ ..+++|||.||..||..|++..+...||+|
T Consensus 1 C~iC~~~~~~~----~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP----VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE----EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC----CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999988 139999999999999999996556789988
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.60 E-value=2.5e-08 Score=74.81 Aligned_cols=47 Identities=34% Similarity=0.733 Sum_probs=38.8
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|.||++...+. +.++|||. ||..|+.+|++.. ..||+||+.++
T Consensus 1 ~~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDV-----VLLPCGHLCFCEECAERLLKRK--KKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSE-----EEETTCEEEEEHHHHHHHHHTT--SBBTTTTBB-S
T ss_pred CcCCCccCCccCCce-----EEeCCCChHHHHHHhHHhcccC--CCCCcCChhhc
Confidence 357899999987776 99999999 9999999999844 59999999764
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.60 E-value=2.8e-08 Score=97.60 Aligned_cols=52 Identities=31% Similarity=0.540 Sum_probs=40.7
Q ss_pred CccccccccccccccCC---CcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGD---RSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~---~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.+.++.. ...+++.|+|.||..||..|+..+ .+||+||..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~--~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK--NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC--CCCCCCCCEee
Confidence 35799999998765421 123567899999999999999865 49999999754
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.4e-08 Score=92.18 Aligned_cols=50 Identities=36% Similarity=0.788 Sum_probs=41.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
..+.|+|||+.+.+- ..+.++|||.||..||+..++... .||+|++.++.
T Consensus 130 ~~~~CPiCl~~~sek---~~vsTkCGHvFC~~Cik~alk~~~--~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEK---VPVSTKCGHVFCSQCIKDALKNTN--KCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhc---cccccccchhHHHHHHHHHHHhCC--CCCCcccccch
Confidence 568899999988654 336789999999999999998664 89999986543
No 12
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.54 E-value=2.1e-08 Score=102.07 Aligned_cols=61 Identities=25% Similarity=0.459 Sum_probs=52.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSFPE 98 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~k~ 98 (452)
..++|.||.++|..| ++++|+|+||.-||..++..+ .+||.|+..+.. |..+.++++.+..
T Consensus 22 ~lLRC~IC~eyf~ip-----~itpCsHtfCSlCIR~~L~~~--p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP-----MITPCSHTFCSLCIRKFLSYK--PQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhcCc-----eeccccchHHHHHHHHHhccC--CCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 568999999999999 999999999999999999876 499999998764 6777777765543
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.52 E-value=5.2e-08 Score=69.69 Aligned_cols=39 Identities=36% Similarity=0.901 Sum_probs=33.0
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
|+||++.+.+| ++.++|||.||..||..|++.+ ..||+|
T Consensus 1 C~iC~~~~~~~----~~~~~CGH~fC~~C~~~~~~~~--~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP----VVVTPCGHSFCKECIEKYLEKN--PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE----EEECTTSEEEEHHHHHHHHHCT--SB-TTT
T ss_pred CCCCCCcccCc----CEECCCCCchhHHHHHHHHHCc--CCCcCC
Confidence 89999999887 4689999999999999999863 699988
No 14
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.48 E-value=1e-07 Score=77.44 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=36.2
Q ss_pred ccccccccccccc--------CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 33 VSCSICLELVTDN--------GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 33 l~CpICLe~f~dP--------~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
..|+||++.|.++ .+..++...|||.||..||.+|++.+. +||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence 3599999999544 134557779999999999999998665 999997
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=6.9e-08 Score=99.20 Aligned_cols=47 Identities=32% Similarity=0.784 Sum_probs=40.0
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
..|+||+|.|++.+ + +.+|+|+|.||..||+.|+...+ ..||+||..
T Consensus 230 ~~CaIClEdY~~Gd-k-lRiLPC~H~FH~~CIDpWL~~~r-~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD-K-LRILPCSHKFHVNCIDPWLTQTR-TFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCC-e-eeEecCCCchhhccchhhHhhcC-ccCCCCCCc
Confidence 49999999998763 3 36699999999999999998764 479999884
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.45 E-value=1.7e-07 Score=65.83 Aligned_cols=44 Identities=41% Similarity=0.839 Sum_probs=35.7
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
.|+||++.+.++ ..+++|||.||..|+..|+.. +...||.|++.
T Consensus 1 ~C~iC~~~~~~~----~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREP----VVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCc----eEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 599999998555 355569999999999999985 33589999875
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.41 E-value=1.6e-07 Score=91.41 Aligned_cols=54 Identities=28% Similarity=0.579 Sum_probs=40.8
Q ss_pred Ccccccccccccccc---CC-CcceecccCCcchHhHHHHHHhcC----CCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDN---GD-RSWAKLQCGHQFHLDCIGSAFNSK----GAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP---~~-~~ivlL~CGH~FC~~CI~swl~sk----g~~~CPlCRk~~k 84 (452)
++..|+||++.+.++ .+ +-.++..|+|.||..||..|.+.+ ....||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 578999999976432 12 123677999999999999999753 1357999999754
No 18
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.33 E-value=2.9e-07 Score=74.52 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=43.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve 94 (452)
+.+.|+||.+.+.+| ++++|||+|+..||..|+... ...||.|+..+.. |..+.+.++
T Consensus 3 ~~f~CpIt~~lM~dP-----Vi~~~G~tyer~~I~~~l~~~-~~~~P~t~~~l~~~~l~pn~~Lk~~I~ 65 (73)
T PF04564_consen 3 DEFLCPITGELMRDP-----VILPSGHTYERSAIERWLEQN-GGTDPFTRQPLSESDLIPNRALKSAIE 65 (73)
T ss_dssp GGGB-TTTSSB-SSE-----EEETTSEEEEHHHHHHHHCTT-SSB-TTT-SB-SGGGSEE-HHHHHHHH
T ss_pred cccCCcCcCcHhhCc-----eeCCcCCEEcHHHHHHHHHcC-CCCCCCCCCcCCcccceECHHHHHHHH
Confidence 468999999999999 999999999999999999962 3599999988654 555555554
No 19
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.9e-07 Score=86.48 Aligned_cols=63 Identities=29% Similarity=0.710 Sum_probs=50.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc---cccchhhhhhhccCCCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI---EKGQWLYSNGCRSFPEFS 100 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~---~k~N~~L~nlve~~k~~~ 100 (452)
+.+.|+||++.|..| .+++|||.||..||..++. ....||.||.. +..|..+.+++..+....
T Consensus 12 ~~~~C~iC~~~~~~p-----~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-----VLLPCGHNFCRACLTRSWE--GPLSCPVCRPPSRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred ccccChhhHHHhhcC-----ccccccchHhHHHHHHhcC--CCcCCcccCCchhccCccHHHHHHHHHHHhcC
Confidence 679999999999999 8999999999999999888 45799999941 123566666666555443
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.31 E-value=5.2e-07 Score=61.13 Aligned_cols=39 Identities=44% Similarity=0.974 Sum_probs=33.3
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
|+||++....+ +.++|||.||..|+..|+. .+...||.|
T Consensus 1 C~iC~~~~~~~-----~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDP-----VVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCc-----EEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 88999986666 8899999999999999998 333589987
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.2e-07 Score=97.59 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=42.4
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcC---CCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK---GAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk---g~~~CPlCRk~~k~ 85 (452)
+..|+||++....| +++.|||.||..||..+|... +-..||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p-----~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-----VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-----cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999998888 788899999999999999763 34789999997654
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.28 E-value=4e-07 Score=67.53 Aligned_cols=41 Identities=32% Similarity=0.768 Sum_probs=23.4
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcC--CCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK--GAMQCP 77 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk--g~~~CP 77 (452)
|+||.+ +.+. +..-+.|+|||+||.+||..+++.. +.+.||
T Consensus 1 CpIc~e-~~~~-~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE-ENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT-SS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC-CCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7772 2223889999999999999999854 457787
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.24 E-value=9.1e-07 Score=65.00 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=35.2
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk 81 (452)
.|.||++.+. + +....++.|||+||..||..+. .....||+|++
T Consensus 1 ~C~~C~~~~~-~-~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-E-ERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCcccc-C-CCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 4899999982 1 2346899999999999999887 33469999985
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.8e-07 Score=92.69 Aligned_cols=51 Identities=29% Similarity=0.746 Sum_probs=41.8
Q ss_pred CccccccccccccccC--------CCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNG--------DRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~--------~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
++..|.||++.+..++ +.....++|||.+|..|++.|+++++ +||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 5789999999855442 22346799999999999999999875 999999984
No 25
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.17 E-value=7.4e-07 Score=89.57 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=42.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.-+.|-||.+.+..| +++.|||+||.-||..++..+. .||+||....
T Consensus 24 s~lrC~IC~~~i~ip-----~~TtCgHtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP-----CETTCGHTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc-----eecccccchhHHHHHHHhcCCC--CCccccccHH
Confidence 357899999999999 9999999999999999998764 8999999754
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.2e-06 Score=86.80 Aligned_cols=51 Identities=29% Similarity=0.552 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
.+..|.||++...+| ..++|||.||..||...|..+..-.||+||+.+..+
T Consensus 214 ~d~kC~lC~e~~~~p-----s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVP-----SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCc-----ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 588999999999999 999999999999999944333333599999976543
No 27
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.8e-06 Score=87.29 Aligned_cols=51 Identities=33% Similarity=0.780 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|+||++.|.+. ++ .+.++|.|.||..|+..|+... ..+||+||..+.
T Consensus 322 ~GveCaICms~fiK~-d~-~~vlPC~H~FH~~Cv~kW~~~y-~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKN-DR-LRVLPCDHRFHVGCVDKWLLGY-SNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhccc-ce-EEEeccCceechhHHHHHHhhh-cccCCccCCCCC
Confidence 357899999998765 33 6889999999999999999833 249999998653
No 28
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.00 E-value=5.5e-06 Score=69.92 Aligned_cols=36 Identities=33% Similarity=0.665 Sum_probs=30.0
Q ss_pred cceecccCCcchHhHHHHHHhcC-CCCCCCCCccccc
Q 039031 49 SWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKIEK 84 (452)
Q Consensus 49 ~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~~k 84 (452)
.++.-.|+|.||..||.+|++.. ...+||+||+.++
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 45677899999999999999864 3469999999754
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.9e-06 Score=91.77 Aligned_cols=50 Identities=36% Similarity=0.800 Sum_probs=42.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
.+..|+||.+.+....+....+++|+|.||..|+.+|++.+. +||.||..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q--tCP~CR~~ 339 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ--TCPTCRTV 339 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC--cCCcchhh
Confidence 578999999999884333448999999999999999999865 99999994
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=8.8e-06 Score=82.75 Aligned_cols=52 Identities=21% Similarity=0.528 Sum_probs=39.1
Q ss_pred cccccccccc-ccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLEL-VTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~-f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+..||||... +..|..+..+. .|||.||..||...|.. +...||.|++++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 4689999995 45663332333 89999999999998764 44699999998654
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.1e-06 Score=88.05 Aligned_cols=49 Identities=39% Similarity=0.773 Sum_probs=42.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.++.|+||++.++.. +....|.|.||.+||...+...+ ..||.||+.+.
T Consensus 42 ~~v~c~icl~llk~t----mttkeClhrfc~~ci~~a~r~gn-~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT----MTTKECLHRFCFDCIWKALRSGN-NECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHhcC-CCCchHHhhcc
Confidence 689999999999876 46779999999999999888655 49999999753
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.78 E-value=6.5e-06 Score=66.18 Aligned_cols=54 Identities=22% Similarity=0.504 Sum_probs=27.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc-----cchhhhhh
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK-----GQWLYSNG 92 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k-----~N~~L~nl 92 (452)
+.+.|++|.+.+..| +.+..|.|.||..||...+. ..||+|+.+.. .|+.+.+|
T Consensus 6 ~lLrCs~C~~~l~~p----v~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 6 ELLRCSICFDILKEP----VCLGGCEHIFCSSCIRDCIG----SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp HTTS-SSS-S--SS-----B---SSS--B-TTTGGGGTT----TB-SSS--B-S-SS----HHHHHH
T ss_pred HhcCCcHHHHHhcCC----ceeccCccHHHHHHhHHhcC----CCCCCcCChHHHHHHHhhhhhhcc
Confidence 468899999999999 23579999999999976443 36999998742 25555544
No 33
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1e-05 Score=80.72 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=48.9
Q ss_pred CCcCCccCccccccccccccccCC-----CcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 24 DSRGKSFRTVSCSICLELVTDNGD-----RSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 24 sse~e~ledl~CpICLe~f~dP~~-----~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
+...+++++..|+||...+....+ .....|.|+|.||..||.-|.--.++.+||.|++.+...
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 455667788999999997764421 134778999999999999998766667999999976543
No 34
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.5e-05 Score=79.49 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=75.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc----------chhhhhhhccCCCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG----------QWLYSNGCRSFPEFS 100 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~----------N~~L~nlve~~k~~~ 100 (452)
.++.|.||+..+..| +.++|||.||..||.+.+... ..||.||..+.. ++....++..+....
T Consensus 83 sef~c~vc~~~l~~p-----v~tpcghs~c~~Cl~r~ld~~--~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP-----VVTPCGHSFCLECLDRSLDQE--TECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred chhhhhhhHhhcCCC-----ccccccccccHHHHHHHhccC--CCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 579999999999999 888999999999999977633 599999998652 222233333332221
Q ss_pred CC-cccccc---cccccccCccCcc--------cccCCCCCCCCCCCChhhhhhhhhchhhhccccCCCcccccCCCCc
Q 039031 101 MD-DWTHDE---DLYDLSYSEMSFG--------VHWCPFGSLTRLPSSFEEEISSLQKTEVRIGKTESPLNQNVKNGGM 167 (452)
Q Consensus 101 ~~-e~~~eE---d~~d~e~sE~p~~--------~~~CPFg~lt~lpS~Fee~Es~lq~tevr~gK~e~~~~~~~~~~~~ 167 (452)
.. .+...+ ..+.....+.|+- .-.||. ++||.....+..+.++-|..+|..+..-...+.
T Consensus 156 ~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl-------~vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~~ 227 (398)
T KOG4159|consen 156 SSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPL-------QVFEPRYRLMIRRLLETGDKRFGICLSDSSKGS 227 (398)
T ss_pred hccchhhhhhhccccccccccCCcccccccccccccCcH-------HHccchHHHHHHHHHhhcceeeeeecccccCCc
Confidence 11 111111 1111122333332 122332 578888887878888887777775554444443
No 35
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=3.8e-05 Score=79.35 Aligned_cols=54 Identities=28% Similarity=0.625 Sum_probs=40.3
Q ss_pred CccccccccccccccC--C-CcceecccCCcchHhHHHHHHhcCC-----CCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNG--D-RSWAKLQCGHQFHLDCIGSAFNSKG-----AMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~--~-~~ivlL~CGH~FC~~CI~swl~skg-----~~~CPlCRk~~k 84 (452)
.+..|.||++.+.+.. + +..++.+|.|.||..||..|-..+. ...||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4789999999766541 1 1224467999999999999985443 479999999754
No 36
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.1e-05 Score=82.19 Aligned_cols=52 Identities=38% Similarity=0.785 Sum_probs=46.6
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.+|+||++.+..+.+.-++.+.|||.|-.+||..|+.++.+++||.|.....
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 5899999999988888899999999999999999998666789999987643
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=4.5e-05 Score=84.57 Aligned_cols=50 Identities=24% Similarity=0.684 Sum_probs=43.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
+-+.|++|.....+. +++.|||.||..||...+.... ..||.|.+.|-.|
T Consensus 642 ~~LkCs~Cn~R~Kd~-----vI~kC~H~FC~~Cvq~r~etRq-RKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA-----VITKCGHVFCEECVQTRYETRQ-RKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhH-----HHHhcchHHHHHHHHHHHHHhc-CCCCCCCCCCCcc
Confidence 568999999887777 9999999999999999988654 4999999987654
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00012 Score=74.11 Aligned_cols=48 Identities=25% Similarity=0.516 Sum_probs=40.7
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
...|+||+....-| +.|.|+|.||+-||+-.... ++..|++||.++..
T Consensus 7 ~~eC~IC~nt~n~P-----v~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP-----VNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC-----ccccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 46899999998888 99999999999999876553 33589999999765
No 39
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.18 E-value=0.00032 Score=58.83 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=34.9
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.|+-|.......++-.++.-.|.|.||..||.+|+..++ .||+||+.+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~--~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG--VCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence 344444433222233556668999999999999999876 9999999753
No 40
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.17 E-value=0.00018 Score=56.43 Aligned_cols=43 Identities=28% Similarity=0.618 Sum_probs=31.5
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCC
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPN 78 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPl 78 (452)
.+.|+|.+..|.+| +....|||.|....|.+|++.++...||+
T Consensus 11 ~~~CPiT~~~~~~P----V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP----VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE----EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC----cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 58999999999999 34469999999999999996666689998
No 41
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.09 E-value=0.00017 Score=58.42 Aligned_cols=53 Identities=30% Similarity=0.641 Sum_probs=24.5
Q ss_pred ccccccccccccccCCCc-cee--cccCCcchHhHHHHHHhcC--C-------CCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRS-WAK--LQCGHQFHLDCIGSAFNSK--G-------AMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~-ivl--L~CGH~FC~~CI~swl~sk--g-------~~~CPlCRk~~k 84 (452)
+..|.||+..+.+.+... .+. ..|+..||..||.+||... . ...||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999865222221 122 3899999999999999742 1 036999999764
No 42
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0004 Score=69.74 Aligned_cols=49 Identities=24% Similarity=0.496 Sum_probs=40.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
.+.+|++|.+.-..| -+..+|||.||..||...+...-.++||.|...+
T Consensus 238 ~~~~C~~Cg~~PtiP----~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP----HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred CCceeeccCCCCCCC----eeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 578999999988888 2566799999999999877755568999998754
No 43
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.01 E-value=0.00044 Score=72.51 Aligned_cols=48 Identities=27% Similarity=0.775 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCccee-cccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAK-LQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivl-L~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||...+.+| +. +.|||.||..|+..|+.. ...||.|+.....
T Consensus 20 ~~l~C~~C~~vl~~p-----~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP-----VQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQ 68 (391)
T ss_pred ccccCccccccccCC-----CCCCCCCCcccccccchhhcc--CcCCcccccccch
Confidence 569999999999999 66 599999999999999987 3599999887543
No 44
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.00 E-value=0.0002 Score=73.28 Aligned_cols=48 Identities=23% Similarity=0.569 Sum_probs=41.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|.+|..+|.++ ..+..|-|+||..||..++... ..||.|...+.
T Consensus 14 ~~itC~LC~GYliDA----TTI~eCLHTFCkSCivk~l~~~--~~CP~C~i~ih 61 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA----TTITECLHTFCKSCIVKYLEES--KYCPTCDIVIH 61 (331)
T ss_pred cceehhhccceeecc----hhHHHHHHHHHHHHHHHHHHHh--ccCCccceecc
Confidence 568999999999998 3677999999999999999874 49999988764
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00072 Score=69.86 Aligned_cols=46 Identities=30% Similarity=0.594 Sum_probs=37.1
Q ss_pred ccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
..+|.||+...++- ++|+|-|. .|..|.+...-..+ .||+||+.+.
T Consensus 290 gkeCVIClse~rdt-----~vLPCRHLCLCs~Ca~~Lr~q~n--~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDT-----VVLPCRHLCLCSGCAKSLRYQTN--NCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcce-----EEecchhhehhHhHHHHHHHhhc--CCCccccchH
Confidence 45899999987776 99999996 49999987653333 7999999764
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.93 E-value=0.0003 Score=67.95 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=40.1
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.+.|.||.+.|..| +.+.|||.||..|...-++.. -.|-+|.+....
T Consensus 196 PF~C~iCKkdy~sp-----vvt~CGH~FC~~Cai~~y~kg--~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESP-----VVTECGHSFCSLCAIRKYQKG--DECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccch-----hhhhcchhHHHHHHHHHhccC--Ccceecchhhcc
Confidence 47899999999999 999999999999998876643 489999886554
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00049 Score=73.68 Aligned_cols=53 Identities=30% Similarity=0.643 Sum_probs=39.1
Q ss_pred CccccccccccccccC---C---------CcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNG---D---------RSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~---~---------~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|+||+..+.--. + +.-+.++|.|.||..|+..|++.- +..||.||.++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 4578999998754211 0 113456999999999999999843 369999999753
No 48
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.90 E-value=0.00037 Score=79.03 Aligned_cols=50 Identities=26% Similarity=0.579 Sum_probs=41.0
Q ss_pred Ccccccccccccc-----ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVT-----DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~-----dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
+..+|+||...+. -|++ ....|.|.||..|+..|++..+..+||+||..+
T Consensus 1468 G~eECaICYsvL~~vdr~lPsk---rC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSK---RCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCcc---ccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 5678999998765 2211 567899999999999999988888999999754
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00026 Score=55.60 Aligned_cols=47 Identities=30% Similarity=0.506 Sum_probs=38.4
Q ss_pred cccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.+|.||.+.-.+. ++..|||. .|.+|-.+.++. ....||+||++++.
T Consensus 8 dECTICye~pvds-----VlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS-----VLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH-----HHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 5899999987777 88999995 699999887774 33599999997653
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.85 E-value=0.00066 Score=75.84 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=39.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|++|+..+.+. .......|+|.||..||..|-+... +||+||..|.
T Consensus 122 ~~~~CP~Ci~s~~Dq--L~~~~k~c~H~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQ--LEESEKHTAHYFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHH--hhccccccccccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 345688888877654 2335678999999999999987654 9999999864
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.84 E-value=0.0006 Score=72.27 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=40.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+.-+|+||++.+... -..++.+.|.|.|+..|+..|+. ..||+||....
T Consensus 174 ELPTCpVCLERMD~s-~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS-TTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCcc-ccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 778999999998643 34457789999999999999976 48999998543
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.76 E-value=0.0013 Score=49.98 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=33.6
Q ss_pred ccccccccccccCCCcceecccC-----CcchHhHHHHHHhcCCCCCCCCCc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCG-----HQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CG-----H~FC~~CI~swl~skg~~~CPlCR 80 (452)
.|-||++ ..++. .....+|. +.+|..|+.+|+..++...||+|+
T Consensus 1 ~CrIC~~-~~~~~--~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEG--DPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCC--CeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 22221 22677885 789999999999887777999995
No 53
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0009 Score=69.97 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=34.1
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCC-CCCCCCc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGA-MQCPNCR 80 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~-~~CPlCR 80 (452)
..|.||.+.+... ..+..+-.|||+||..|+..|+..... ..||+|+
T Consensus 5 A~C~Ic~d~~p~~-~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPND-HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccc-cccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 5799995443332 223344569999999999999986532 5899998
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.64 E-value=0.00077 Score=70.72 Aligned_cols=47 Identities=34% Similarity=0.622 Sum_probs=38.6
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.|.||-+.=++ +.+-+|||..|..|+..|........||.||..++.
T Consensus 371 LCKICaendKd-----vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKD-----VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCC-----cccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 59999985333 378899999999999999866544699999998876
No 55
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00069 Score=56.48 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=29.1
Q ss_pred cceecccCCcchHhHHHHHHhcCC-CCCCCCCccccc
Q 039031 49 SWAKLQCGHQFHLDCIGSAFNSKG-AMQCPNCRKIEK 84 (452)
Q Consensus 49 ~ivlL~CGH~FC~~CI~swl~skg-~~~CPlCRk~~k 84 (452)
+++.-.|.|.|+..||.+|+.... ..+||+||+.++
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 445568999999999999998643 368999999753
No 56
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.24 E-value=0.0021 Score=69.55 Aligned_cols=50 Identities=26% Similarity=0.530 Sum_probs=42.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc---CCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS---KGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s---kg~~~CPlCRk~~k~ 85 (452)
+...|.+|.+..+++ +...|-|.||..||.++... ....+||.|-..+..
T Consensus 535 ~~~~C~lc~d~aed~-----i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY-----IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhh-----HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 568999999999998 89999999999999888764 234799999887643
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0023 Score=64.94 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=40.3
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.+.|-||..+|..| +...|+|.||..|...-++.. ..|.+|.+....
T Consensus 241 Pf~c~icr~~f~~p-----Vvt~c~h~fc~~ca~~~~qk~--~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP-----VVTKCGHYFCEVCALKPYQKG--EKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccccc-----hhhcCCceeehhhhccccccC--Ccceeccccccc
Confidence 45699999999999 999999999999998877643 389999987654
No 58
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0033 Score=55.17 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=35.1
Q ss_pred ccccccccccccc------------CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 33 VSCSICLELVTDN------------GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP------------~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
-.|+||...+-+. .+-.+.--.|.|.||..||.+|+++++ .||+|.+.
T Consensus 47 DnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~--vCPLdn~e 106 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN--VCPLDNKE 106 (114)
T ss_pred chhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC--cCCCcCcc
Confidence 4699988654321 112233447999999999999999776 89999875
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.88 E-value=0.0043 Score=63.29 Aligned_cols=44 Identities=36% Similarity=0.940 Sum_probs=36.9
Q ss_pred ccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk 81 (452)
.+.|+.|...+.+| +.+ -|+|.||..||...+... .+.||+|..
T Consensus 274 ~LkCplc~~Llrnp-----~kT~cC~~~fc~eci~~al~ds-Df~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP-----MKTPCCGHTFCDECIGTALLDS-DFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc-----ccCccccchHHHHHHhhhhhhc-cccCCCccc
Confidence 38899999999999 555 789999999999877643 379999966
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.87 E-value=0.0032 Score=66.09 Aligned_cols=50 Identities=34% Similarity=0.850 Sum_probs=40.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
++.|..|.+.+-.. ......++|.|+||..|+.+++.+++...||.||+.
T Consensus 365 ~L~Cg~CGe~~Glk-~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLK-NERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCC-cccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 57899999976422 123477899999999999999988777899999963
No 61
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.74 E-value=0.0087 Score=61.08 Aligned_cols=53 Identities=21% Similarity=0.473 Sum_probs=41.0
Q ss_pred CccccccccccccccCCCcceeccc--CCcchHhHHHHHHhcCCCCCCCCCcccccc--chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQC--GHQFHLDCIGSAFNSKGAMQCPNCRKIEKG--QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~C--GH~FC~~CI~swl~skg~~~CPlCRk~~k~--N~~L~nlve 94 (452)
+-+.||||.+.+..| +.+| ||..|..|-.+.. ..||.||..+.. .+.++++++
T Consensus 47 ~lleCPvC~~~l~~P------i~QC~nGHlaCssC~~~~~-----~~CP~Cr~~~g~~R~~amEkV~e 103 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP------IFQCDNGHLACSSCRTKVS-----NKCPTCRLPIGNIRCRAMEKVAE 103 (299)
T ss_pred hhccCchhhccCccc------ceecCCCcEehhhhhhhhc-----ccCCccccccccHHHHHHHHHHH
Confidence 788999999999888 6788 8999999986432 289999998874 344444444
No 62
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.21 E-value=0.014 Score=54.70 Aligned_cols=54 Identities=28% Similarity=0.623 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCcceeccc------------CCcc-hHhHHHHHHhcC--------------------------
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQC------------GHQF-HLDCIGSAFNSK-------------------------- 71 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~C------------GH~F-C~~CI~swl~sk-------------------------- 71 (452)
++.+|+|||+.-.+. |+|-| +..+ |..|+.++-+..
T Consensus 1 ed~~CpICme~PHNA-----VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA-----VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSES 75 (162)
T ss_pred CCccCceeccCCCce-----EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccc
Confidence 468999999987777 66654 3322 678888765421
Q ss_pred ---CCCCCCCCccccccchhh
Q 039031 72 ---GAMQCPNCRKIEKGQWLY 89 (452)
Q Consensus 72 ---g~~~CPlCRk~~k~N~~L 89 (452)
....||+||..++....+
T Consensus 76 ~~~~~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 76 QEQPELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccccccCccccCceeceEEc
Confidence 136899999988775444
No 63
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.06 E-value=0.018 Score=44.01 Aligned_cols=47 Identities=26% Similarity=0.647 Sum_probs=23.3
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
|++|.+.+.. .++.+.-=+||..+|+.|+...++. ....||.||++.
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCccccccc-CCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 7899998833 2443444578999999999887763 234999999864
No 64
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.025 Score=58.42 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=38.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
+...|+||+....+| .+...-|-.||..||.+++.+.+ .||+-..+.
T Consensus 299 ~~~~CpvClk~r~Np----tvl~vSGyVfCY~Ci~~Yv~~~~--~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP----TVLEVSGYVFCYPCIFSYVVNYG--HCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCC----ceEEecceEEeHHHHHHHHHhcC--CCCccCCcc
Confidence 667899999998888 35666799999999999998665 899865543
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.02 Score=59.65 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=38.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||.-.-... +..+|+|.-|.+||.+.+-+. +.|-.|+..+.
T Consensus 421 Ed~lCpICyA~pi~A-----vf~PC~H~SC~~CI~qHlmN~--k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINA-----VFAPCSHRSCYGCITQHLMNC--KRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchh-----hccCCCCchHHHHHHHHHhcC--CeeeEecceee
Confidence 678899999876666 889999999999999876533 48999988643
No 66
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.0061 Score=61.98 Aligned_cols=41 Identities=32% Similarity=0.690 Sum_probs=33.6
Q ss_pred ccccccccccccccCCCcceecccCC-cchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGH-QFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH-~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
...|.||++...+. +.|.||| .-|..|-..+ ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DC-----vfLeCGHmVtCt~CGkrm------~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC-----VFLECGHMVTCTKCGKRM------NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcce-----EEeecCcEEeehhhcccc------ccCchHHHHH
Confidence 57899999998888 9999999 4588886542 2799999854
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.48 E-value=0.015 Score=65.29 Aligned_cols=47 Identities=28% Similarity=0.731 Sum_probs=40.2
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
..|.||++ ...+ +...|+|.||..|+...+.......||+||..+..
T Consensus 455 ~~c~ic~~-~~~~-----~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSF-----FITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccc-----eeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 5555 89999999999999998887665689999997654
No 68
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.037 Score=56.24 Aligned_cols=49 Identities=29% Similarity=0.662 Sum_probs=38.6
Q ss_pred cccccccc-ccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 34 SCSICLEL-VTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 34 ~CpICLe~-f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.|++|... +.+| +....+-+|+|..|..|+...+.. +...||.|.+++.
T Consensus 2 ~Cp~CKt~~Y~np-~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNP-DLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCc-cceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhh
Confidence 59999985 5677 444455599999999999998874 4569999988754
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.98 E-value=0.039 Score=65.62 Aligned_cols=53 Identities=26% Similarity=0.649 Sum_probs=39.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC--------CCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK--------GAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk--------g~~~CPlCRk~~k~ 85 (452)
.+-.|-||+..--. ..+.+.|.|+|.||+.|....++.. +-++||+|+.++..
T Consensus 3485 ~DDmCmICFTE~L~--AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS--AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhC--CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 45679999874321 2245889999999999998887753 33899999997653
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.73 E-value=0.01 Score=58.66 Aligned_cols=46 Identities=24% Similarity=0.576 Sum_probs=33.9
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+.|-.|...-. .....++.|.|.||..|...-.. -.|++|++.++.
T Consensus 4 VhCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~~~----~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRFPS---QDPFFLTACRHVFCEPCLKASSP----DVCPLCKKSIRI 49 (233)
T ss_pred EEeccccccCC---CCceeeeechhhhhhhhcccCCc----cccccccceeee
Confidence 56887777432 34578999999999999864222 289999998654
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.032 Score=58.04 Aligned_cols=43 Identities=28% Similarity=0.599 Sum_probs=33.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
....|.||++...+. +.++|||..| |+.-... ..+||+||..+
T Consensus 304 ~p~lcVVcl~e~~~~-----~fvpcGh~cc--ct~cs~~---l~~CPvCR~rI 346 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSA-----VFVPCGHVCC--CTLCSKH---LPQCPVCRQRI 346 (355)
T ss_pred CCCceEEecCCccce-----eeecCCcEEE--chHHHhh---CCCCchhHHHH
Confidence 356799999987776 9999999987 8765433 24799999854
No 72
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.52 E-value=0.067 Score=55.80 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.8
Q ss_pred CCcCCccCccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 24 DSRGKSFRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 24 sse~e~ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
++++..-+...|-||-+.+.-. ..++|+|..|--|..+.-.--....|++||...
T Consensus 53 SaddtDEen~~C~ICA~~~TYs-----~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYS-----ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccceeEEecCCceEE-----EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3344444667899999988766 789999999999987643322335899999864
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.069 Score=53.24 Aligned_cols=50 Identities=30% Similarity=0.689 Sum_probs=39.1
Q ss_pred ccccccccccccc-CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 33 VSCSICLELVTDN-GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 33 l~CpICLe~f~dP-~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
..|-||-+.|..- +++....|.|||.+|..|+...+. .....||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~-~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLG-NSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhc-CceeeccCCCCcc
Confidence 5799999988643 244457788999999999987776 4456899999984
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.01 E-value=0.074 Score=52.84 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=40.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
..+.|||+...|. .....+.+.+|||.|+..||...- ....||+|-+++..
T Consensus 112 ~~~~CPvt~~~~~-~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFN-GKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccC-CceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCcccc
Confidence 5689999999884 334556778999999999999872 22479999998753
No 75
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.65 E-value=0.068 Score=57.13 Aligned_cols=35 Identities=17% Similarity=0.525 Sum_probs=31.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS 70 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s 70 (452)
+++.|+||...|.+| ++|+|+|..|..|....+..
T Consensus 3 eelkc~vc~~f~~ep-----iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP-----IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCc-----eEeecccHHHHHHHHhhccc
Confidence 578999999999999 99999999999999876554
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.073 Score=56.45 Aligned_cols=50 Identities=24% Similarity=0.602 Sum_probs=37.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC------CCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK------GAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk------g~~~CPlCRk~ 82 (452)
..+.|.||++.... ..-++.++|+|.||..|+..++... +.+.||.|...
T Consensus 183 slf~C~ICf~e~~G--~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMG--QHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcC--cceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 46789999997543 2346889999999999999998742 23788876543
No 77
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.38 E-value=0.035 Score=55.35 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=39.7
Q ss_pred Ccccccccccc-ccccCCCcceecccCCcchHhHHHHHHhcCCCCCCC--CCccccc
Q 039031 31 RTVSCSICLEL-VTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCP--NCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~-f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CP--lCRk~~k 84 (452)
.+..||||..+ +-+|.-+..+...|-|..|.+|+.+.|.. +..+|| -|.+++.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence 46799999985 55773333344459999999999999875 456999 6977653
No 78
>PHA03096 p28-like protein; Provisional
Probab=92.33 E-value=0.08 Score=53.82 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=34.3
Q ss_pred ccccccccccccc--CC-CcceecccCCcchHhHHHHHHhcC-CCCCCCCCccc
Q 039031 33 VSCSICLELVTDN--GD-RSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP--~~-~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~ 82 (452)
..|.||++....- .+ .=..+..|.|.||..||..|.... ..-.||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 6799999965421 11 222556899999999999998753 22466666663
No 79
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.82 E-value=0.052 Score=55.63 Aligned_cols=53 Identities=25% Similarity=0.547 Sum_probs=39.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc---------------------CCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS---------------------KGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s---------------------kg~~~CPlCRk~~k~ 85 (452)
....|.|||.-|.+. -.++.+.|.|-||..|+.+++.. +-.-.||+||..++.
T Consensus 114 p~gqCvICLygfa~~--~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASS--PAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCC--CceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 356899999988755 23588999999999999888752 012469999987653
No 80
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=0.15 Score=51.15 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
..+.|+||.+.+.+. ..-.++.+|||.||..|+..++... +.||+|-++++.
T Consensus 220 ~ryiCpvtrd~LtNt-~~ca~Lr~sg~Vv~~ecvEklir~D--~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNT-TPCAVLRPSGHVVTKECVEKLIRKD--MVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCc-cceEEeccCCcEeeHHHHHHhcccc--ccccCCCCcCcc
Confidence 468899999998865 3334677999999999999987644 699999887654
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=91.23 E-value=0.18 Score=51.14 Aligned_cols=47 Identities=32% Similarity=0.701 Sum_probs=37.1
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk 81 (452)
...|+||.+.+... ......++|||..+..|+...... + +.||+|.+
T Consensus 158 ~~ncPic~e~l~~s-~~~~~~~~CgH~~h~~cf~e~~~~-~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLS-FEDAGVLKCGHYMHSRCFEEMICE-G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccc-cccCCccCcccchHHHHHHHHhcc-C-CCCCcccc
Confidence 45599999976643 333477899999999999887664 4 89999999
No 82
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.77 E-value=0.065 Score=60.04 Aligned_cols=48 Identities=35% Similarity=0.731 Sum_probs=41.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCC-CCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKG-AMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg-~~~CPlCRk~~ 83 (452)
..+.|+||+..+..| +.+.|.|.||..|+...+..+. ..+||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p-----~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-----SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeecc-----chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 568999999999999 8999999999999988776543 57999999654
No 83
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.11 Score=57.69 Aligned_cols=45 Identities=31% Similarity=0.699 Sum_probs=33.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk 81 (452)
+-+.|.||+..|... ...-+.+.|||+.|..|+....+. +|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~-~~~Pvsl~cghtic~~c~~~lyn~----scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQ-RLEPVSLQCGHTICGHCVQLLYNA----SCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHH-hcCcccccccchHHHHHHHhHhhc----cCC-CCc
Confidence 567899998876532 222388999999999999876652 788 544
No 84
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.22 Score=49.50 Aligned_cols=50 Identities=26% Similarity=0.588 Sum_probs=39.0
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcC------CCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK------GAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk------g~~~CPlCRk~~k~ 85 (452)
-.|.+|...+... + .+.|.|-|.||.+|+.+|...- ...+||.|...+-.
T Consensus 51 pNC~LC~t~La~g-d--t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASG-D--TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccC-c--ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4699999888755 3 3889999999999999987641 13799999886543
No 85
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.28 E-value=0.1 Score=43.75 Aligned_cols=32 Identities=28% Similarity=0.781 Sum_probs=27.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
++..|+||...+.+. .++..+|||.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~---~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNS---VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCc---eEEEeCCCeEEeccccc
Confidence 567899999998764 46888999999999975
No 86
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=0.17 Score=57.88 Aligned_cols=45 Identities=27% Similarity=0.729 Sum_probs=37.0
Q ss_pred ccCccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 29 SFRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 29 ~ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
-+....|.+|...+.-| .|-..|||.||..|+. .+...||.|+..
T Consensus 837 i~q~skCs~C~~~LdlP----~VhF~CgHsyHqhC~e-----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLP----FVHFLCGHSYHQHCLE-----DKEDKCPKCLPE 881 (933)
T ss_pred eeeeeeecccCCccccc----eeeeecccHHHHHhhc-----cCcccCCccchh
Confidence 33556899999999888 5889999999999997 234589999873
No 87
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=89.87 E-value=0.36 Score=45.47 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=36.5
Q ss_pred CccccccccccccccCCCcceecccCC-----cchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGH-----QFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH-----~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.+..|-||.+.-. . ...+|.. ..|..|+.+|+..++...|++|+..+.
T Consensus 7 ~~~~CRIC~~~~~-~-----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-V-----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-C-----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4568999988632 2 2346655 349999999999888889999999754
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=0.14 Score=52.70 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=30.8
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
-.|--|-..+..- ..+++|.|.||++|...- ..+.||.|...+.
T Consensus 91 HfCd~Cd~PI~IY----GRmIPCkHvFCl~CAr~~----~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIY----GRMIPCKHVFCLECARSD----SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceee----ecccccchhhhhhhhhcC----ccccCcCcccHHH
Confidence 3466676655433 167899999999998542 2359999977654
No 89
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.60 E-value=0.22 Score=52.00 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=36.9
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
-.|++|++.+... ++-..--+||-..|.-|+...-+.- ...||.||.....
T Consensus 15 d~cplcie~mdit-dknf~pc~cgy~ic~fc~~~irq~l-ngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDIT-DKNFFPCPCGYQICQFCYNNIRQNL-NGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccc-cCCcccCCcccHHHHHHHHHHHhhc-cCCChHhhhhccc
Confidence 3499999987654 4445666899999999986544332 2489999997643
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.60 E-value=0.14 Score=40.25 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=32.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
...|-.|...-.+. ++++|||..|..|+.-+- - ..||.|.+++.
T Consensus 7 ~~~~~~~~~~~~~~-----~~~pCgH~I~~~~f~~~r--Y--ngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG-----TVLPCGHLICDNCFPGER--Y--NGCPFCGTPFE 50 (55)
T ss_pred ceeEEEcccccccc-----ccccccceeeccccChhh--c--cCCCCCCCccc
Confidence 45677777765555 899999999999986431 1 37999988764
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=89.20 E-value=0.33 Score=36.01 Aligned_cols=43 Identities=33% Similarity=0.834 Sum_probs=23.1
Q ss_pred cccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
|.+|.+.+... ..-....|+-.+|..|+..++.......||.|
T Consensus 1 C~~C~~iv~~G--~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee--ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888877665 00011258889999999999987654579987
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.83 E-value=0.52 Score=35.95 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=23.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHh---cCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN---SKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~---skg~~~CPlCRk~ 82 (452)
.+.|+|....+..| +....|.|.-|.+- ..|+. ..+...||+|.++
T Consensus 2 sL~CPls~~~i~~P----~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIP----VRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSE----EEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeC----ccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 36899999999888 46679999988764 23433 3455889999863
No 93
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.21 E-value=0.38 Score=36.21 Aligned_cols=42 Identities=26% Similarity=0.560 Sum_probs=27.2
Q ss_pred cccccccccccCCCcceecccCC-----cchHhHHHHHHhcCCCCCCCCC
Q 039031 35 CSICLELVTDNGDRSWAKLQCGH-----QFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH-----~FC~~CI~swl~skg~~~CPlC 79 (452)
|-||++.-.+.. ..+.+|.- ..|..|+.+|+..++...|++|
T Consensus 1 CrIC~~~~~~~~---~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE---PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS----EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC---ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678888654331 25666643 5599999999998777789987
No 94
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=87.13 E-value=0.39 Score=54.98 Aligned_cols=52 Identities=33% Similarity=0.770 Sum_probs=39.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-----CCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-----GAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-----g~~~CPlCRk~~ 83 (452)
+.+.|.||.+.+..- .-.+....|-|.||+.||..|.... ....||.|....
T Consensus 190 ~~yeCmIC~e~I~~t-~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRT-APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeecccc-CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 468899999987533 3345566799999999999998652 348899998543
No 95
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=0.25 Score=52.71 Aligned_cols=50 Identities=30% Similarity=0.695 Sum_probs=37.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC----CC--CCCCC--Cccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK----GA--MQCPN--CRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk----g~--~~CPl--CRk~~k 84 (452)
....|-||.+.+.. .++.+.|||.||..|+..++..+ .. +.||. |+..+.
T Consensus 69 ~~~~c~ic~~~~~~----~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 69 GDVQCGICVESYDG----EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred ccccCCcccCCCcc----hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 46899999998764 24889999999999999998764 11 46764 655443
No 96
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.29 E-value=0.59 Score=53.33 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=41.7
Q ss_pred CCCCCCCCCcCCccCccccccccccccccCCC--cceecccCCcchHhHHHHHHhc----CCCCCCCCCcccc
Q 039031 17 DGDVGDCDSRGKSFRTVSCSICLELVTDNGDR--SWAKLQCGHQFHLDCIGSAFNS----KGAMQCPNCRKIE 83 (452)
Q Consensus 17 ~~~~g~~sse~e~ledl~CpICLe~f~dP~~~--~ivlL~CGH~FC~~CI~swl~s----kg~~~CPlCRk~~ 83 (452)
+..+...+.+.+..+...|.||...+.++.+- ....-.|+|.||..||..|... ...-.|+.|...+
T Consensus 81 eS~~snsE~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 81 ESSSSNDEVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccccccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 33334434444555667788887776664211 1133359999999999999864 2234677887654
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.16 E-value=0.69 Score=42.58 Aligned_cols=53 Identities=21% Similarity=0.384 Sum_probs=38.2
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCC-CCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKG-AMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg-~~~CPlCRk~~k~ 85 (452)
-.+|.||.+...+.. -+--.--||-..|..|....|+... -..||+|+..++.
T Consensus 80 lYeCnIC~etS~ee~-FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEER-FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhh-cCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 468999999765541 0001124899999999999887643 2689999998765
No 98
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=0.97 Score=47.93 Aligned_cols=49 Identities=24% Similarity=0.531 Sum_probs=37.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCC--CCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGA--MQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~--~~CPlCRk~ 82 (452)
..+.|||=.+.-.+ +.+.+.|.|||..|.+-|.+..+ ++. +.||+|-..
T Consensus 333 SvF~CPVlKeqtsd--eNPPm~L~CGHVISkdAlnrLS~-ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSD--ENPPMMLICGHVISKDALNRLSK-NGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccC--CCCCeeeeccceecHHHHHHHhh-CCCeeeeCCCCCcc
Confidence 67899997664331 22359999999999999998766 344 899999663
No 99
>PHA02862 5L protein; Provisional
Probab=84.69 E-value=0.78 Score=42.84 Aligned_cols=46 Identities=22% Similarity=0.511 Sum_probs=34.9
Q ss_pred cccccccccccccCCCcceecccCC-----cchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGH-----QFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH-----~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
..|-||.+.-.+. .-+|.. .-|..|+.+|++..++..|++|+..+.
T Consensus 3 diCWIC~~~~~e~------~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER------NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC------cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4799999864322 345543 569999999999877789999999764
No 100
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=83.03 E-value=0.79 Score=48.20 Aligned_cols=30 Identities=37% Similarity=0.864 Sum_probs=24.0
Q ss_pred cCCcchHhHHHHHHhcC-----------CCCCCCCCccccc
Q 039031 55 CGHQFHLDCIGSAFNSK-----------GAMQCPNCRKIEK 84 (452)
Q Consensus 55 CGH~FC~~CI~swl~sk-----------g~~~CPlCRk~~k 84 (452)
|-...|.+|+.+||..+ ++..||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 45677999999999753 3579999999865
No 101
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.60 E-value=0.63 Score=49.11 Aligned_cols=52 Identities=29% Similarity=0.728 Sum_probs=35.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC----CCCCCCC--Ccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK----GAMQCPN--CRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk----g~~~CPl--CRk~~ 83 (452)
....|.||........+. .....|+|.||.+|+.+++..+ ..+.||. |...+
T Consensus 145 ~~~~C~iC~~e~~~~~~~-f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDM-FSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRL 202 (384)
T ss_pred ccccCccCccccccHhhh-HHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccC
Confidence 357899999443333122 2367899999999999988753 3477875 54443
No 102
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=82.12 E-value=1.8 Score=51.19 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=38.9
Q ss_pred CccCcccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 28 KSFRTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 28 e~ledl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+.+....|.||.+.+- ..++.=+..-.|+=-.|+.|.+ +=.+.+...||.|++..+
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 3445569999999754 2223334556888899999994 444456679999998654
No 103
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.04 E-value=0.63 Score=42.73 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=27.0
Q ss_pred ccccccccccccccCCCcceecccC------CcchHhHHHHHHh
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCG------HQFHLDCIGSAFN 69 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CG------H~FC~~CI~swl~ 69 (452)
..+|.||++.+.+. ..++.+.|| |.||.+|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~--~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNN--DGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcC--CCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 57899999988762 223556664 6799999999943
No 104
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=81.85 E-value=0.52 Score=56.09 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=39.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
+...|.||++.+..- ..+..|||.+|..|+..|+..+ ..||+|+..
T Consensus 1152 ~~~~c~ic~dil~~~----~~I~~cgh~~c~~c~~~~l~~~--s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQ----GGIAGCGHEPCCRCDELWLYAS--SRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhc----CCeeeechhHhhhHHHHHHHHh--ccCcchhhh
Confidence 567899999999843 1788999999999999999866 489999865
No 105
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=0.58 Score=47.89 Aligned_cols=43 Identities=28% Similarity=0.790 Sum_probs=34.8
Q ss_pred CccccccccccccccCCCcceeccc----CCcchHhHHHHHHhcCC---CCCCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQC----GHQFHLDCIGSAFNSKG---AMQCPN 78 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~C----GH~FC~~CI~swl~skg---~~~CPl 78 (452)
.-+.|.+|.|.|+|- ...+| .|.||+-|-.+.++.++ ..-||.
T Consensus 267 apLcCTLC~ERLEDT-----HFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-----HFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CceeehhhhhhhccC-----ceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 568999999999987 66777 89999999999888653 356665
No 106
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.02 E-value=1.9 Score=41.66 Aligned_cols=52 Identities=27% Similarity=0.604 Sum_probs=34.7
Q ss_pred ccccccccccccc--CCCcceecccCCcchHhHHHHHHhcC----C-----CCCCCCCccccc
Q 039031 33 VSCSICLELVTDN--GDRSWAKLQCGHQFHLDCIGSAFNSK----G-----AMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP--~~~~ivlL~CGH~FC~~CI~swl~sk----g-----~~~CPlCRk~~k 84 (452)
..|.||..+--+. .+...-...||..||.-|+..|++.- . -..||.|.+++.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4577777643222 12233446899999999999999741 1 147999998754
No 107
>PLN02189 cellulose synthase
Probab=77.76 E-value=3.4 Score=48.82 Aligned_cols=58 Identities=24% Similarity=0.463 Sum_probs=39.8
Q ss_pred cCCccCcccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 26 RGKSFRTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 26 e~e~ledl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
..+.+....|.||.+.+- ..++.=+..-.|+--.|..|.+ +-.+.+...||.|++..+
T Consensus 28 ~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 28 PLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CcccccCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 344556669999999864 2223333445688889999994 444445679999999765
No 108
>PLN02436 cellulose synthase A
Probab=75.70 E-value=3.6 Score=48.75 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=39.5
Q ss_pred cCCccCcccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 26 RGKSFRTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 26 e~e~ledl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.-+.+....|.||.+.+- ..++.=+..-.|+--.|..|.+ +-.+.+...||.|++..+
T Consensus 30 ~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 30 SVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccCCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhcCCccCcccCCchh
Confidence 334445669999999863 2223333445788899999994 444445679999999755
No 109
>PLN02400 cellulose synthase
Probab=72.54 E-value=3.9 Score=48.55 Aligned_cols=58 Identities=24% Similarity=0.425 Sum_probs=39.9
Q ss_pred cCCccCcccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 26 RGKSFRTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 26 e~e~ledl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.-+.+....|.||.+.+- ..++.=+..-.|+=-.|+.|.+ +=.+.+...||.|+...+
T Consensus 30 p~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 30 PLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 334445669999999754 2223334556888899999994 433345679999999765
No 110
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=71.18 E-value=2.3 Score=32.49 Aligned_cols=42 Identities=14% Similarity=0.393 Sum_probs=25.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+.+.||.|.+.+... .++.-|...-....+...||+|...+.
T Consensus 1 ~~f~CP~C~~~~~~~------------~L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES------------SLVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCCccCHH------------HHHHHHHhHCcCCCCCccCCCchhhhh
Confidence 358899999955433 133344444333334578999987443
No 111
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.40 E-value=1.9 Score=42.01 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=27.9
Q ss_pred cccccccccccCCCcceecccCC-cchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 35 CSICLELVTDNGDRSWAKLQCGH-QFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 35 CpICLe~f~dP~~~~ivlL~CGH-~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
|-+|.+.-. .+++++|.| .+|..|-.. ...||+|+.+.
T Consensus 161 Cr~C~~~~~-----~VlllPCrHl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREA-----TVLLLPCRHLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred ceecCcCCc-----eEEeecccceEeccccccc------CccCCCCcChh
Confidence 888888532 348899998 678888643 34799998753
No 112
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=0.8 Score=48.66 Aligned_cols=50 Identities=28% Similarity=0.505 Sum_probs=39.0
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
..|.||.+.+..- -..+..+.|||.++..||..|+... ..||.|+..+..
T Consensus 197 ~sl~I~~~slK~~-y~k~~~~~~g~~~~~~kL~k~L~~~--~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQN-YDKISAIVCGHIYHHGKLSKWLATK--RKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHH-HHHHHHHhhcccchhhHHHHHHHHH--HHhHHHHhhhhh
Confidence 4799999987643 1123567899999999999999875 389999998754
No 113
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.13 E-value=3.8 Score=46.37 Aligned_cols=75 Identities=25% Similarity=0.405 Sum_probs=48.0
Q ss_pred ccccccccccccCCCcceecccCC-cchHhHHHHHHhcCC----CCCCCCCcccccc--chhhhhhhccCCCCCCCcccc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGH-QFHLDCIGSAFNSKG----AMQCPNCRKIEKG--QWLYSNGCRSFPEFSMDDWTH 106 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH-~FC~~CI~swl~skg----~~~CPlCRk~~k~--N~~L~nlve~~k~~~~~e~~~ 106 (452)
.|+||-..+.-. ..-.||| ..|..|..+...... ...||+||..+.. +.....-+-.+.+-.+++|..
T Consensus 2 ~c~ic~~s~~~~-----~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~~t~~~~~~~~~~~ 76 (669)
T KOG2231|consen 2 SCAICAFSPDFV-----GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAVGTFPEGRKCDFDE 76 (669)
T ss_pred CcceeecCcccc-----ccccccccccchhhhhhhhhhcccccccccCcccccceeeecccccccccccccccccccccc
Confidence 599999987766 7789999 999999988765443 3578999996543 222222222222334556666
Q ss_pred ccccccc
Q 039031 107 DEDLYDL 113 (452)
Q Consensus 107 eEd~~d~ 113 (452)
.|+.+.+
T Consensus 77 ~e~~~~i 83 (669)
T KOG2231|consen 77 HEDTCVI 83 (669)
T ss_pred ccceeee
Confidence 6655544
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.97 E-value=2.9 Score=43.23 Aligned_cols=30 Identities=33% Similarity=0.768 Sum_probs=23.8
Q ss_pred cCCcchHhHHHHHHhc-----------CCCCCCCCCccccc
Q 039031 55 CGHQFHLDCIGSAFNS-----------KGAMQCPNCRKIEK 84 (452)
Q Consensus 55 CGH~FC~~CI~swl~s-----------kg~~~CPlCRk~~k 84 (452)
|....|..|+.+|+.. .++-+||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5677899999999863 24579999999864
No 115
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.01 E-value=3.4 Score=47.33 Aligned_cols=42 Identities=33% Similarity=0.590 Sum_probs=33.2
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCC
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPN 78 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPl 78 (452)
-+.|.||.-.+..- ..+...|+|..|.+|...||..+. .||.
T Consensus 1028 ~~~C~~C~l~V~gs---s~~Cg~C~Hv~H~sc~~eWf~~gd--~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGS---SNFCGTCGHVGHTSCMMEWFRTGD--VCPS 1069 (1081)
T ss_pred eeeeeeEeeEeecc---chhhccccccccHHHHHHHHhcCC--cCCC
Confidence 35688887766543 247889999999999999999765 7886
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.58 E-value=3.5 Score=41.71 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=29.6
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcC
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK 71 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk 71 (452)
.|++|+..+.+| ++.+=||.||..||.+++-.+
T Consensus 45 cCsLtLqPc~dP-----vit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 45 CCSLTLQPCRDP-----VITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred eeeeecccccCC-----ccCCCCeeeeHHHHHHHHHHH
Confidence 578999999999 999999999999999987644
No 117
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=66.42 E-value=2.4 Score=32.82 Aligned_cols=32 Identities=25% Similarity=0.670 Sum_probs=22.0
Q ss_pred eeccc-CCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 51 AKLQC-GHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 51 vlL~C-GH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
-+..| .|-.|..|+...+.... .||+|.+++.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~--~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSD--RCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSS--EETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhcccc--CCCcccCcCc
Confidence 45667 68889999998887554 8999998754
No 118
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=65.21 E-value=7.8 Score=45.96 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=38.0
Q ss_pred cCccccccccccccc--cCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 30 FRTVSCSICLELVTD--NGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 30 ledl~CpICLe~f~d--P~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+....|.||.+.+-. .++.=+..-.|+--.|..|.. +=.+.+...||.|+...+
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcCCccCCccCCchh
Confidence 355689999997542 223333555788899999994 444445679999999765
No 119
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.71 E-value=11 Score=31.95 Aligned_cols=55 Identities=25% Similarity=0.491 Sum_probs=22.6
Q ss_pred ccCcccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 29 SFRTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 29 ~ledl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.+....|.||.+.+- ..++.-+....|+-..|..|+.--.+ .+...||.|+...+
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 345678999999753 22233334557898999999975444 45569999998654
No 120
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=62.65 E-value=6.3 Score=31.09 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=27.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGS 66 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~s 66 (452)
...|.+|.+.|.+. +.+++-..||-.+|++|+..
T Consensus 5 ~~~C~~Cg~~~~~~-dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDG-DDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCC-CCEEECCCCCCcccHHHHhh
Confidence 46899999999654 44577889999999999754
No 121
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.95 E-value=4.8 Score=46.72 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=28.1
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHh
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN 69 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~ 69 (452)
...|.+|...+... +.+..+|||.||.+||.+...
T Consensus 817 ~d~C~~C~~~ll~~---pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIK---PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ccchHHhcchhhcC---cceeeeccchHHHHHHHHHHH
Confidence 56899999976532 368889999999999987654
No 122
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=2.5 Score=42.15 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=37.1
Q ss_pred ccccccccccccc-cCCCcceecc--------cCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTD-NGDRSWAKLQ--------CGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~d-P~~~~ivlL~--------CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
...|.||...+.. .....-..+. |||+.|..|+...+...+ ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~-~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG-IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh-hcCCcccce
Confidence 4679999998772 2222223344 999999999999887666 799999873
No 123
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=54.19 E-value=10 Score=37.47 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCcceecccCC-----cchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGH-----QFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH-----~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+...|-||.......... ....+|.. ..|..|+..|+..++...|.+|.....
T Consensus 77 ~~~~cRIc~~~~~~~~~~-~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGL-LLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCcEEEEeccccccccc-ccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 347899999965432100 25566633 348999999999888889999988643
No 124
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=48.65 E-value=16 Score=42.43 Aligned_cols=47 Identities=23% Similarity=0.447 Sum_probs=35.1
Q ss_pred ccccccccccc-c-ccCCCcceecccCCc-----chHhHHHHHHhcCCCCCCCCCcccc
Q 039031 32 TVSCSICLELV-T-DNGDRSWAKLQCGHQ-----FHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f-~-dP~~~~ivlL~CGH~-----FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
+..|-||...- . +| ..-+|... .|..|+.+|+.-.+...|-+|..++
T Consensus 12 ~~~CRICr~e~~~d~p-----LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~ 65 (1175)
T COG5183 12 KRSCRICRTEDIRDDP-----LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY 65 (1175)
T ss_pred chhceeecCCCCCCCc-----CcccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence 46899998742 2 33 44466543 5899999999977778999998875
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=47.88 E-value=14 Score=38.75 Aligned_cols=49 Identities=31% Similarity=0.632 Sum_probs=35.4
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
-.|+||.+....- +...+-.+|++..|+.|+....... ..||.||+...
T Consensus 250 ~s~p~~~~~~~~~-d~~~lP~~~~~~~~l~~~~t~~~~~--~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLT-DSNFLPCPCGFRLCLFCHKTISDGD--GRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCccccc-ccccccccccccchhhhhhcccccC--CCCCccCCccc
Confidence 5799999976322 2233556889999999998766544 49999997644
No 127
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=47.47 E-value=13 Score=38.85 Aligned_cols=52 Identities=25% Similarity=0.562 Sum_probs=36.5
Q ss_pred cc-CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-CCCCCCCCccc
Q 039031 29 SF-RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKI 82 (452)
Q Consensus 29 ~l-edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~ 82 (452)
++ .-+.||+-.+.-.+ +.+.+.+.|||..-...+....+.. -.+.||.|-..
T Consensus 332 hfHs~FiCPVlKe~~t~--ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTD--ENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcc--cCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 44 67899986665332 1224999999999999888765532 13889999653
No 128
>PLN02195 cellulose synthase A
Probab=46.42 E-value=15 Score=43.33 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=36.6
Q ss_pred cccccccccccc--cCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTD--NGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~d--P~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
..|.||.+.+-. .++.=+..-.|+--.|+.|.+ +=.+.+...||.|+...+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 489999996542 223333556899999999994 444456679999999877
No 129
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.61 E-value=7.4 Score=37.28 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=20.3
Q ss_pred CccccccccccccccCCCcceecccCCcchH
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHL 61 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~ 61 (452)
+.-+|.||+|.+... ..+..|+|-.+||.
T Consensus 176 dkGECvICLEdL~~G--dtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAG--DTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCC--CceeccceEEEeec
Confidence 456799999988754 23577888766653
No 130
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=44.17 E-value=20 Score=40.48 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=35.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc---CCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS---KGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s---kg~~~CPlCRk~~k 84 (452)
-.+.|+|+...+.-| ..-..|+|.-|++-.. ++.. +....||+|.+...
T Consensus 305 vSL~CPl~~~Rm~~P----~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLP----ARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred eEecCCcccceeecC----Ccccccccceecchhh-hHHhccCCCeeeCccCCcccc
Confidence 468899999988777 2567899988887653 2221 34589999988754
No 131
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.29 E-value=3.5 Score=30.42 Aligned_cols=46 Identities=28% Similarity=0.730 Sum_probs=30.0
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhc----CCCCCCCCCcc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS----KGAMQCPNCRK 81 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s----kg~~~CPlCRk 81 (452)
.|.||... +..+..+.--.|+..||..|+..-... .....|+.|+.
T Consensus 1 ~C~vC~~~--~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS--DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS--CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc--CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48889883 223444555688999999998654331 23578888753
No 132
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=39.54 E-value=3.1 Score=34.41 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=22.5
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++.|+.|...+... =++.+|..|-..+... ..||.|.+++.
T Consensus 1 e~~CP~C~~~L~~~---------~~~~~C~~C~~~~~~~---a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ---------GGHYHCEACQKDYKKE---AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEE---------TTEEEETTT--EEEEE---EE-TTT-SB-E
T ss_pred CCcCCCCCCccEEe---------CCEEECccccccceec---ccCCCcccHHH
Confidence 36899999986543 1778888887654332 48999998754
No 133
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=39.34 E-value=15 Score=36.42 Aligned_cols=45 Identities=27% Similarity=0.630 Sum_probs=34.8
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
..|.+|.+.+... +..-.|+=.++..|+..++... ..||.|..-+
T Consensus 182 k~Cn~Ch~LvIqg----~rCg~c~i~~h~~c~qty~q~~--~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG----IRCGSCNIQYHRGCIQTYLQRR--DICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhhee----eccCcccchhhhHHHHHHhccc--CcCCchhccc
Confidence 5799999976544 2556788889999999999863 5999995543
No 134
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.98 E-value=22 Score=40.80 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=39.2
Q ss_pred CccccccccccccccCCC-----cceecccCCcc--------------------hHhHHHHHHhcC------CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDR-----SWAKLQCGHQF--------------------HLDCIGSAFNSK------GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~-----~ivlL~CGH~F--------------------C~~CI~swl~sk------g~~~CPlC 79 (452)
+..+|.-|++.+.+|.++ =+..+.||..| |..|..++-.-. ....||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 678899999999998654 22456899888 999998875431 34789999
Q ss_pred ccc
Q 039031 80 RKI 82 (452)
Q Consensus 80 Rk~ 82 (452)
.-.
T Consensus 180 GP~ 182 (750)
T COG0068 180 GPH 182 (750)
T ss_pred CCC
Confidence 664
No 135
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=35.84 E-value=19 Score=41.18 Aligned_cols=53 Identities=30% Similarity=0.594 Sum_probs=39.3
Q ss_pred CccccccccccccccCCC-----cceecccCCcc--------------------hHhHHHHHHhcC------CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDR-----SWAKLQCGHQF--------------------HLDCIGSAFNSK------GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~-----~ivlL~CGH~F--------------------C~~CI~swl~sk------g~~~CPlC 79 (452)
+-..|.-|+..+.+|.++ -+-.+.||..| |.+|..++.+.. ....|+.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 667899999999998654 22446788877 999999985532 23689999
Q ss_pred cccc
Q 039031 80 RKIE 83 (452)
Q Consensus 80 Rk~~ 83 (452)
--.+
T Consensus 147 gp~l 150 (711)
T TIGR00143 147 GPQL 150 (711)
T ss_pred CcEE
Confidence 6654
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=20 Score=37.98 Aligned_cols=46 Identities=26% Similarity=0.553 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
-..|++|.-.+.....-.-++=.|||.||..|...|...+. .|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~--~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNG--ECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCc--cccCc
Confidence 46799888876543222113334999999999988866442 45443
No 137
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.69 E-value=39 Score=34.58 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=36.6
Q ss_pred CccCccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 28 KSFRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 28 e~ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.....+.|+|-.-.+..- .+-.++..|||.|-..-+.+.- ...|++|...+.
T Consensus 107 ~~~a~fiCPvtgleMng~-~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~ 158 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGK-YRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQ 158 (293)
T ss_pred cccceeecccccceecce-EEEEEEeccceeccHHHHHHhh----hccccccCCccc
Confidence 333678999877666433 2333677999999988776642 358999998764
No 138
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=32.68 E-value=54 Score=26.25 Aligned_cols=44 Identities=27% Similarity=0.696 Sum_probs=27.8
Q ss_pred ccccccccccccC-CCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 34 SCSICLELVTDNG-DRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 34 ~CpICLe~f~dP~-~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
.|-.|-..+...+ +.-+-...| +||.+|....+. + .||+|...+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfEC--TFC~~C~e~~l~--~--~CPNCgGel 51 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFEC--TFCADCAETMLN--G--VCPNCGGEL 51 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeC--cccHHHHHHHhc--C--cCcCCCCcc
Confidence 4666777665432 222222333 699999998774 2 899997743
No 139
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=32.33 E-value=25 Score=35.81 Aligned_cols=45 Identities=20% Similarity=0.439 Sum_probs=37.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCC--Cc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPN--CR 80 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPl--CR 80 (452)
+++|+|=+..+..| ++...|||.|=++-|..++.......||+ |-
T Consensus 176 s~rdPis~~~I~nP----viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP----VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhch----hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 57899988888888 47789999999999999887655578987 54
No 140
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.54 E-value=21 Score=36.40 Aligned_cols=51 Identities=24% Similarity=0.488 Sum_probs=34.5
Q ss_pred ccccccccccccccCCCcceeccc-----CCcchHhHHHHHHhcCC------CCCCCCCcccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQC-----GHQFHLDCIGSAFNSKG------AMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~C-----GH~FC~~CI~swl~skg------~~~CPlCRk~~ 83 (452)
+-.|-||+..=++.. +.--.-+| .|..|..|+..|+.++. ...||.|+...
T Consensus 20 eR~CWiCF~TdeDn~-~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 20 ERCCWICFATDEDNR-LAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ceeEEEEeccCcccc-hhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 468999998644431 11012244 56789999999998652 26899999864
No 141
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.53 E-value=30 Score=33.66 Aligned_cols=58 Identities=22% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCCCCCCccccccchhhhhhhccCCCCCCCcccccccccccccCcc---CcccccCCCCCCCCCCCChhh
Q 039031 73 AMQCPNCRKIEKGQWLYSNGCRSFPEFSMDDWTHDEDLYDLSYSEM---SFGVHWCPFGSLTRLPSSFEE 139 (452)
Q Consensus 73 ~~~CPlCRk~~k~N~~L~nlve~~k~~~~~e~~~eEd~~d~e~sE~---p~~~~~CPFg~lt~lpS~Fee 139 (452)
..+||+|.+.++.........+.. ..+..+...|.++ -..+..||-.+++.....|+.
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~---------~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~ 65 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVI---------RRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEK 65 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEe---------eecCCCccccCCCCCeeeeEEECCCCCCccccccccc
Confidence 369999999887543222111111 1111112223332 356889999998887777753
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=30.28 E-value=17 Score=39.03 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=0.0
Q ss_pred ccccccccccccccC---------CCcceecccCCcchHhHHHHHHhc-CCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNG---------DRSWAKLQCGHQFHLDCIGSAFNS-KGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~---------~~~ivlL~CGH~FC~~CI~swl~s-kg~~~CPlCRk~ 82 (452)
-.+|+|=+..+.-|. ....+.+.|||.+-..=+..--+. .....||+||..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecccccccccccccccCCCcccc
Confidence 457888877655442 235688999998765432211111 124699999986
No 143
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=29.18 E-value=29 Score=30.06 Aligned_cols=36 Identities=31% Similarity=0.641 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
...|-||...+..+ |+.||..|-.. ++ .|.+|-+.+
T Consensus 44 ~~~C~~CK~~v~q~----------g~~YCq~CAYk----kG--iCamCGKki 79 (90)
T PF10235_consen 44 SSKCKICKTKVHQP----------GAKYCQTCAYK----KG--ICAMCGKKI 79 (90)
T ss_pred CccccccccccccC----------CCccChhhhcc----cC--cccccCCee
Confidence 34799999877665 67899999642 34 899998865
No 144
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.88 E-value=70 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.654 Sum_probs=21.8
Q ss_pred CCcchHhHHHHHHhc-------CCCCCCCCCcccc
Q 039031 56 GHQFHLDCIGSAFNS-------KGAMQCPNCRKIE 83 (452)
Q Consensus 56 GH~FC~~CI~swl~s-------kg~~~CPlCRk~~ 83 (452)
.-.||..||...+.. .....||.||.+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 778999999877653 2458899999864
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.48 E-value=39 Score=35.63 Aligned_cols=45 Identities=24% Similarity=0.495 Sum_probs=24.2
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
...|-.|.+..... -......|.+.||.+|=.-..+.- ..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~--~~y~C~~Ck~~FCldCDv~iHesL--h~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSS--GRYRCESCKNVFCLDCDVFIHESL--HNCPGCE 374 (378)
T ss_pred CcceeeeccccCCC--CcEEchhccceeeccchHHHHhhh--hcCCCcC
Confidence 34477775443322 123455677888888854332222 3677775
No 146
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=28.43 E-value=32 Score=30.34 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=32.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
.+..|.+|...|.--.....+...|.|.+|..|-.. ........|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 567999998865422222357889999999999754 222344678888763
No 147
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=22 Score=36.98 Aligned_cols=48 Identities=31% Similarity=0.535 Sum_probs=38.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+...|-||...+..|. ..-.|+|.||.-|...|.+..+ .|+.|+...+
T Consensus 104 ~~~~~~~~~g~l~vpt----~~qg~w~qf~~~~p~~~~~~~~--~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT----RIQGCWHQFCYVCPKSNFAMGN--DCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecc----cccCceeeeeecCCchhhhhhh--ccchhhcCcC
Confidence 4568999999988882 3345999999999999988654 8999887543
No 148
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=28.08 E-value=34 Score=28.23 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=9.5
Q ss_pred cchHhHHHHHHhc
Q 039031 58 QFHLDCIGSAFNS 70 (452)
Q Consensus 58 ~FC~~CI~swl~s 70 (452)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 149
>PF14353 CpXC: CpXC protein
Probab=27.51 E-value=48 Score=29.19 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=26.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-CCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~~k~ 85 (452)
+++|+-|...+... +...-.-..-..=....+... ...+||.|.+.+..
T Consensus 1 ~itCP~C~~~~~~~-----v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-----VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred CcCCCCCCCeeEEE-----EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 36899999877644 222222112222233333211 24799999997643
No 150
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.15 E-value=25 Score=40.77 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=31.8
Q ss_pred CccccccccccccccCC--CcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 31 RTVSCSICLELVTDNGD--RSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 31 edl~CpICLe~f~dP~~--~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
.+.+|..|.+....... -.++.+.|||.||..|+.....+. .|-.|.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~---~~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRN---ACNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhc---ccChhh
Confidence 34589999997542211 235788999999999997765533 255553
No 151
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=24.62 E-value=53 Score=33.78 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=38.6
Q ss_pred ccccccccccccccCC----CcceecccCCcchHhHHHH-HHhcC--------CCCCCCCCccccccchhhhh
Q 039031 32 TVSCSICLELVTDNGD----RSWAKLQCGHQFHLDCIGS-AFNSK--------GAMQCPNCRKIEKGQWLYSN 91 (452)
Q Consensus 32 dl~CpICLe~f~dP~~----~~ivlL~CGH~FC~~CI~s-wl~sk--------g~~~CPlCRk~~k~N~~L~n 91 (452)
...|.+|-..+..-.. +..-.|+|...+|..-+.+ ||-+. +.+.||.|.+-|...-+|+.
T Consensus 161 a~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRA 233 (279)
T KOG2462|consen 161 AFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRA 233 (279)
T ss_pred cccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHH
Confidence 5789999987653211 1223457777777777654 66542 34999999998876444433
No 152
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=24.40 E-value=32 Score=32.21 Aligned_cols=23 Identities=39% Similarity=0.895 Sum_probs=15.8
Q ss_pred cCCcchHhHHHHHHhc---------CCCCCCCCCccc
Q 039031 55 CGHQFHLDCIGSAFNS---------KGAMQCPNCRKI 82 (452)
Q Consensus 55 CGH~FC~~CI~swl~s---------kg~~~CPlCRk~ 82 (452)
|||.| ..||.. .+...||+|...
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 47777 346653 356899999774
No 153
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.19 E-value=37 Score=26.46 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=20.3
Q ss_pred cccccccccccCC-----CcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 35 CSICLELVTDNGD-----RSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 35 CpICLe~f~dP~~-----~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
|--|+..|....+ ....-..|++.||.+|=.-.. ...-.||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiH--E~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIH--ETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTT--TTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhh--ccccCCcCCC
Confidence 4556666654311 123445899999999953222 2234899883
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.79 E-value=21 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=21.9
Q ss_pred ccc--ccccccccc---CCCcceecccCCcchHhHHHHHH
Q 039031 34 SCS--ICLELVTDN---GDRSWAKLQCGHQFHLDCIGSAF 68 (452)
Q Consensus 34 ~Cp--ICLe~f~dP---~~~~ivlL~CGH~FC~~CI~swl 68 (452)
.|+ -|...+... ....+.-..|++.||..|...|.
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 476 666554432 22223333789999999988773
No 155
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=22.23 E-value=60 Score=24.26 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=23.2
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHH
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSA 67 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~sw 67 (452)
..|.+|...|..- .+...-..||..||..|....
T Consensus 3 ~~C~~C~~~F~~~-~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLT-RRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCC-ccccccCcCcCCcChHHcCCe
Confidence 4688888766432 222355689999999998654
No 156
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.21 E-value=22 Score=33.20 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=11.3
Q ss_pred Ccccccccccc-cccc
Q 039031 31 RTVSCSICLEL-VTDN 45 (452)
Q Consensus 31 edl~CpICLe~-f~dP 45 (452)
++.+|.||+.. |.+.
T Consensus 64 ddatC~IC~KTKFADG 79 (169)
T KOG3799|consen 64 DDATCGICHKTKFADG 79 (169)
T ss_pred cCcchhhhhhcccccc
Confidence 56899999985 5454
No 157
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=22.18 E-value=23 Score=41.24 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=31.2
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHh----cCCCCCCCCCcccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN----SKGAMQCPNCRKIE 83 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~----skg~~~CPlCRk~~ 83 (452)
..|..|...+.+- .++...|++.+|.+|+..|.- ....-.|+.|+...
T Consensus 230 ~mC~~C~~tlfn~---hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 230 EMCDRCETTLFNI---HWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred hhhhhhcccccce---eEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3566777655432 357778999999999999941 11224677666543
No 158
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.72 E-value=50 Score=37.65 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=37.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC---CCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK---GAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk---g~~~CPlCRk~ 82 (452)
..+.|.||...=..........-.|+-.+|..|+..|+... +-..||-||..
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 56778888776554434445566889999999999988753 23678888775
No 159
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.71 E-value=18 Score=36.41 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=18.8
Q ss_pred ccccccccccccccCCCcceec----ccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL----QCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL----~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
...||||...-.-. .+.- .--+.+|.-|-..|--. ...||.|-..
T Consensus 172 ~g~CPvCGs~P~~s----~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS----VLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEE----EEE------EEEEEETTT--EEE----TTS-TTT---
T ss_pred CCcCCCCCCcCceE----EEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCC
Confidence 46999999853322 0111 12456788888888443 2589999764
No 160
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=34 Score=34.57 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccchhhhhhhccCCCCCCCcccccccccccccCcc---CcccccCCCCCCCCCCCChhhhhhhhhchh
Q 039031 72 GAMQCPNCRKIEKGQWLYSNGCRSFPEFSMDDWTHDEDLYDLSYSEM---SFGVHWCPFGSLTRLPSSFEEEISSLQKTE 148 (452)
Q Consensus 72 g~~~CPlCRk~~k~N~~L~nlve~~k~~~~~e~~~eEd~~d~e~sE~---p~~~~~CPFg~lt~lpS~Fee~Es~lq~te 148 (452)
..+.||+|...++........++.+.. +-..+..|.++ -..+-.||...++..++.|+.-++..++|+
T Consensus 18 k~ieCPvC~tkFkkeev~tgsiRiiag---------Dld~~lkygninP~fY~VvvCP~C~yAaf~sDFe~I~~~~~~t~ 88 (267)
T COG1655 18 KTIECPVCNTKFKKEEVKTGSIRIIAG---------DLDFFLKYGNINPYFYDVVVCPICYYAAFKSDFEKIKSYQEKTE 88 (267)
T ss_pred ceeccCcccchhhhhheeccceeEecc---------cccceeeccccCCceeEEEEcchhhHHHhhHHHHhhhhcchhhH
Confidence 347999999987753222221111111 11111123332 356788999999999999987765554433
Done!