Query 039031
Match_columns 452
No_of_seqs 221 out of 1447
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 106.4 5.3 66 27-97 7-80 (92)
2 2yur_A Retinoblastoma-binding 99.3 4.3E-12 1.5E-16 100.2 5.7 49 31-84 14-63 (74)
3 2ecw_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 97.9 6.2 50 31-85 18-71 (85)
4 2djb_A Polycomb group ring fin 99.2 8.5E-12 2.9E-16 97.6 5.2 54 26-86 8-63 (72)
5 2csy_A Zinc finger protein 183 99.2 2.2E-11 7.5E-16 97.2 6.7 47 31-84 14-60 (81)
6 2ecv_A Tripartite motif-contai 99.2 2E-11 6.9E-16 96.5 5.5 50 31-85 18-71 (85)
7 3lrq_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 105.1 2.1 60 31-96 21-86 (100)
8 2ct2_A Tripartite motif protei 99.2 3.6E-11 1.2E-15 96.2 6.6 54 31-85 14-68 (88)
9 2egp_A Tripartite motif-contai 99.2 5.9E-12 2E-16 99.1 1.8 50 31-85 11-65 (79)
10 1t1h_A Gspef-atpub14, armadill 99.2 8.8E-12 3E-16 98.5 2.8 58 31-94 7-69 (78)
11 2ecy_A TNF receptor-associated 99.1 4.6E-11 1.6E-15 91.8 5.6 49 31-85 14-62 (66)
12 2d8t_A Dactylidin, ring finger 99.1 3.1E-11 1.1E-15 94.1 4.1 49 30-85 13-61 (71)
13 2ea6_A Ring finger protein 4; 99.1 6.8E-11 2.3E-15 90.4 5.3 52 31-84 14-67 (69)
14 3l11_A E3 ubiquitin-protein li 99.1 7.3E-12 2.5E-16 106.1 -0.3 48 31-84 14-61 (115)
15 2ect_A Ring finger protein 126 99.1 6.6E-11 2.3E-15 93.4 5.0 51 31-85 14-64 (78)
16 3fl2_A E3 ubiquitin-protein li 99.1 3.4E-11 1.1E-15 103.5 3.4 58 31-94 51-114 (124)
17 2ysl_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 90.6 5.9 50 31-85 19-69 (73)
18 4ayc_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 105.5 3.4 48 31-85 52-99 (138)
19 2ecj_A Tripartite motif-contai 99.1 1.3E-10 4.5E-15 86.3 5.4 44 31-79 14-58 (58)
20 2y43_A E3 ubiquitin-protein li 99.1 2.9E-11 9.8E-16 99.9 2.0 60 31-97 21-86 (99)
21 2kr4_A Ubiquitin conjugation f 99.1 9.9E-11 3.4E-15 95.6 5.1 57 31-94 13-74 (85)
22 2ep4_A Ring finger protein 24; 99.1 1.3E-10 4.4E-15 90.9 5.4 50 31-84 14-63 (74)
23 3ng2_A RNF4, snurf, ring finge 99.0 9.8E-11 3.4E-15 90.3 3.9 53 31-85 9-63 (71)
24 2ysj_A Tripartite motif-contai 99.0 2.9E-10 1E-14 86.3 6.2 44 31-79 19-63 (63)
25 1wgm_A Ubiquitin conjugation f 99.0 1.8E-10 6.1E-15 96.8 5.4 59 31-96 21-85 (98)
26 2yu4_A E3 SUMO-protein ligase 99.0 2E-10 6.8E-15 95.2 5.1 63 31-98 6-81 (94)
27 1z6u_A NP95-like ring finger p 99.0 1.5E-10 5E-15 103.9 4.3 60 31-96 77-142 (150)
28 1g25_A CDK-activating kinase a 99.0 1.9E-10 6.7E-15 88.0 3.8 53 31-85 2-55 (65)
29 2ckl_A Polycomb group ring fin 99.0 1.9E-10 6.4E-15 96.6 4.0 59 31-96 14-82 (108)
30 2kiz_A E3 ubiquitin-protein li 99.0 3.8E-10 1.3E-14 87.1 5.3 50 31-84 13-62 (69)
31 2ecm_A Ring finger and CHY zin 99.0 3.2E-10 1.1E-14 83.4 4.4 50 32-84 5-54 (55)
32 2ckl_B Ubiquitin ligase protei 99.0 2E-10 7E-15 103.1 3.9 62 31-98 53-121 (165)
33 2xeu_A Ring finger protein 4; 99.0 2.4E-10 8.1E-15 86.1 3.5 52 32-85 3-56 (64)
34 1jm7_A BRCA1, breast cancer ty 99.0 2.1E-10 7.2E-15 95.8 2.8 50 31-85 20-70 (112)
35 2kre_A Ubiquitin conjugation f 98.9 7.1E-10 2.4E-14 93.5 5.9 59 31-96 28-91 (100)
36 1v87_A Deltex protein 2; ring- 98.9 3.4E-10 1.2E-14 95.3 3.7 53 32-84 25-93 (114)
37 3hct_A TNF receptor-associated 98.9 9.1E-10 3.1E-14 94.0 6.1 49 31-85 17-65 (118)
38 2l0b_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 91.8 4.0 50 31-84 39-88 (91)
39 2c2l_A CHIP, carboxy terminus 98.9 4.1E-10 1.4E-14 106.6 3.9 60 31-96 207-271 (281)
40 1x4j_A Ring finger protein 38; 98.9 5E-10 1.7E-14 88.0 3.7 50 31-84 22-71 (75)
41 1iym_A EL5; ring-H2 finger, ub 98.9 4.4E-10 1.5E-14 82.9 3.1 49 31-83 4-53 (55)
42 1jm7_B BARD1, BRCA1-associated 98.9 5.3E-11 1.8E-15 101.6 -2.3 58 31-97 21-84 (117)
43 1chc_A Equine herpes virus-1 r 98.9 8.7E-10 3E-14 84.6 3.6 47 32-84 5-51 (68)
44 2ecl_A Ring-box protein 2; RNF 98.9 1E-09 3.4E-14 88.5 4.1 52 31-84 14-75 (81)
45 1rmd_A RAG1; V(D)J recombinati 98.8 1.2E-09 4.2E-14 92.5 3.5 49 31-85 22-70 (116)
46 2ecn_A Ring finger protein 141 98.8 8.4E-10 2.9E-14 85.3 1.4 46 31-84 14-59 (70)
47 3hcs_A TNF receptor-associated 98.8 2.2E-09 7.7E-14 96.6 4.1 90 31-126 17-114 (170)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 2.2E-09 7.4E-14 91.1 3.6 53 31-85 6-60 (133)
49 1e4u_A Transcriptional repress 98.8 5E-09 1.7E-13 84.7 5.1 53 31-85 10-62 (78)
50 3htk_C E3 SUMO-protein ligase 98.8 3.1E-09 1.1E-13 104.2 4.5 61 31-96 180-248 (267)
51 2f42_A STIP1 homology and U-bo 98.8 2.9E-09 9.9E-14 99.0 4.0 60 31-96 105-169 (179)
52 1bor_A Transcription factor PM 98.7 2.1E-09 7.1E-14 80.9 1.6 44 31-84 5-48 (56)
53 3dpl_R Ring-box protein 1; ubi 98.7 6E-09 2.1E-13 89.0 4.5 52 31-84 36-100 (106)
54 3knv_A TNF receptor-associated 98.7 1.8E-09 6.1E-14 96.0 0.7 47 31-83 30-76 (141)
55 4ic3_A E3 ubiquitin-protein li 98.6 9.9E-09 3.4E-13 81.3 1.3 44 31-85 23-67 (74)
56 4ap4_A E3 ubiquitin ligase RNF 98.5 3.1E-08 1.1E-12 83.9 3.5 54 31-86 71-126 (133)
57 4a0k_B E3 ubiquitin-protein li 98.5 1E-08 3.6E-13 89.3 0.2 50 32-83 48-110 (117)
58 2ea5_A Cell growth regulator w 98.5 6.6E-08 2.3E-12 75.9 4.4 44 31-85 14-58 (68)
59 2d8s_A Cellular modulator of i 98.5 7.8E-08 2.7E-12 78.2 4.5 52 31-85 14-70 (80)
60 2y1n_A E3 ubiquitin-protein li 98.5 5.1E-08 1.7E-12 100.2 4.1 48 32-85 332-379 (389)
61 2vje_A E3 ubiquitin-protein li 98.5 5.6E-08 1.9E-12 75.2 3.1 47 31-84 7-56 (64)
62 2ecg_A Baculoviral IAP repeat- 98.5 2E-08 6.8E-13 79.5 0.6 44 31-85 24-68 (75)
63 1wim_A KIAA0161 protein; ring 98.5 1.7E-08 5.9E-13 82.8 -0.3 49 32-82 5-61 (94)
64 2ct0_A Non-SMC element 1 homol 98.5 1.6E-07 5.6E-12 75.7 5.4 50 31-84 14-63 (74)
65 2vje_B MDM4 protein; proto-onc 98.4 1.3E-07 4.4E-12 73.0 3.2 46 32-84 7-55 (63)
66 2bay_A PRE-mRNA splicing facto 98.2 3.8E-07 1.3E-11 70.5 2.6 47 32-85 3-50 (61)
67 2yho_A E3 ubiquitin-protein li 98.2 1.9E-07 6.5E-12 75.2 0.6 44 31-85 17-61 (79)
68 3t6p_A Baculoviral IAP repeat- 98.1 4E-07 1.4E-11 92.1 1.0 44 31-85 294-338 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1.2E-05 4.1E-10 61.9 3.3 48 32-84 6-58 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 97.8 6.1E-06 2.1E-10 84.0 2.0 55 31-85 307-373 (381)
71 3vk6_A E3 ubiquitin-protein li 97.4 9.5E-05 3.2E-09 63.1 3.6 46 34-84 3-48 (101)
72 3nw0_A Non-structural maintena 96.6 0.0011 3.8E-08 63.8 3.6 49 32-84 180-228 (238)
73 2ko5_A Ring finger protein Z; 94.2 0.049 1.7E-06 46.1 4.6 74 1-86 1-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.021 7E-07 46.8 2.3 34 31-69 2-38 (101)
75 2cs3_A Protein C14ORF4, MY039 91.3 0.18 6.3E-06 41.6 4.1 46 31-81 14-66 (93)
76 3i2d_A E3 SUMO-protein ligase 87.0 0.75 2.6E-05 47.1 5.8 51 31-85 248-300 (371)
77 3m62_A Ubiquitin conjugation f 84.5 0.67 2.3E-05 52.7 4.4 57 31-94 890-952 (968)
78 4fo9_A E3 SUMO-protein ligase 84.1 1 3.5E-05 46.0 5.2 51 31-85 214-266 (360)
79 2lri_C Autoimmune regulator; Z 82.2 0.83 2.8E-05 35.6 2.8 47 31-82 11-59 (66)
80 1weu_A Inhibitor of growth fam 79.4 1.7 5.8E-05 36.1 3.9 48 31-82 35-85 (91)
81 1weo_A Cellulose synthase, cat 78.4 4.9 0.00017 33.7 6.4 54 31-85 15-70 (93)
82 1wep_A PHF8; structural genomi 70.5 2.7 9.2E-05 33.3 2.9 50 31-82 11-63 (79)
83 1wev_A Riken cDNA 1110020M19; 68.4 0.51 1.8E-05 38.6 -1.9 52 31-82 15-72 (88)
84 2l43_A N-teminal domain from h 63.9 1.3 4.6E-05 36.2 -0.2 52 31-82 24-75 (88)
85 2k16_A Transcription initiatio 63.8 1.6 5.6E-05 34.0 0.3 51 31-83 17-69 (75)
86 1wem_A Death associated transc 60.4 2.6 8.9E-05 33.0 0.9 48 32-82 16-70 (76)
87 1we9_A PHD finger family prote 58.8 1.1 3.8E-05 33.9 -1.5 50 31-81 5-57 (64)
88 2ku3_A Bromodomain-containing 58.3 1.6 5.3E-05 34.5 -0.7 51 31-81 15-65 (71)
89 2zet_C Melanophilin; complex, 56.4 1.2 4.1E-05 40.2 -1.9 67 31-98 67-138 (153)
90 1wen_A Inhibitor of growth fam 55.2 5 0.00017 31.5 1.8 45 31-82 15-65 (71)
91 2lv9_A Histone-lysine N-methyl 53.1 4.1 0.00014 33.7 1.0 49 31-82 27-76 (98)
92 2e6r_A Jumonji/ARID domain-con 52.2 1.7 5.7E-05 35.8 -1.5 51 29-81 13-65 (92)
93 2yt5_A Metal-response element- 51.6 1.3 4.3E-05 33.8 -2.2 51 32-82 6-61 (66)
94 2l5u_A Chromodomain-helicase-D 50.4 8 0.00027 29.2 2.2 46 31-81 10-57 (61)
95 2lbm_A Transcriptional regulat 49.4 12 0.0004 33.5 3.4 45 33-82 64-117 (142)
96 2yql_A PHD finger protein 21A; 49.3 1.7 5.7E-05 32.4 -1.8 46 31-81 8-55 (56)
97 3o36_A Transcription intermedi 47.0 4.2 0.00014 36.7 0.1 47 32-83 4-52 (184)
98 1f62_A Transcription factor WS 46.5 7.8 0.00027 27.9 1.5 46 34-81 2-49 (51)
99 1mm2_A MI2-beta; PHD, zinc fin 46.0 5.4 0.00019 30.2 0.6 46 32-82 9-56 (61)
100 3lqh_A Histone-lysine N-methyl 45.2 4.3 0.00015 37.5 -0.2 52 33-84 3-65 (183)
101 2ri7_A Nucleosome-remodeling f 44.0 3.8 0.00013 36.5 -0.7 49 32-82 8-59 (174)
102 4g9i_A Hydrogenase maturation 43.7 12 0.0004 41.6 3.0 53 31-83 105-188 (772)
103 1wil_A KIAA1045 protein; ring 43.1 33 0.0011 28.4 4.9 34 31-67 14-47 (89)
104 3ttc_A HYPF, transcriptional r 42.5 12 0.00042 40.8 2.9 53 31-83 16-99 (657)
105 1fp0_A KAP-1 corepressor; PHD 42.1 11 0.00038 31.0 1.9 46 31-81 24-71 (88)
106 3v43_A Histone acetyltransfera 40.1 28 0.00097 29.0 4.2 50 32-81 5-63 (112)
107 3v43_A Histone acetyltransfera 38.5 7.5 0.00026 32.6 0.4 47 34-81 63-111 (112)
108 3vth_A Hydrogenase maturation 37.8 14 0.00047 41.0 2.4 53 31-83 110-193 (761)
109 1wee_A PHD finger family prote 37.4 4.3 0.00015 31.5 -1.2 49 31-81 15-65 (72)
110 3u5n_A E3 ubiquitin-protein li 37.3 6.6 0.00022 36.2 -0.2 45 33-82 8-54 (207)
111 2ee8_A Protein ODD-skipped-rel 37.2 61 0.0021 24.8 5.5 46 31-89 16-61 (106)
112 1m3v_A FLIN4, fusion of the LI 36.7 21 0.00073 29.7 2.9 51 31-85 31-81 (122)
113 2ro1_A Transcription intermedi 36.2 7.9 0.00027 35.5 0.1 45 33-82 3-49 (189)
114 2pv0_B DNA (cytosine-5)-methyl 36.0 24 0.00081 36.3 3.6 46 32-82 93-148 (386)
115 1wew_A DNA-binding family prot 35.8 8.7 0.0003 30.3 0.3 49 31-82 15-72 (78)
116 1z60_A TFIIH basal transcripti 34.8 17 0.00057 28.0 1.7 43 33-79 16-58 (59)
117 3mjh_B Early endosome antigen 34.4 7.8 0.00027 26.8 -0.2 15 31-45 4-18 (34)
118 3o70_A PHD finger protein 13; 31.2 5.5 0.00019 31.0 -1.5 48 31-81 18-66 (68)
119 3ql9_A Transcriptional regulat 30.9 30 0.001 30.4 2.9 45 33-82 58-111 (129)
120 2rsd_A E3 SUMO-protein ligase 30.7 4.1 0.00014 31.4 -2.4 45 31-81 9-64 (68)
121 2lv2_A Insulinoma-associated p 30.0 97 0.0033 24.3 5.7 44 31-90 27-73 (85)
122 2kgg_A Histone demethylase jar 29.7 11 0.00037 27.5 -0.1 46 34-80 4-52 (52)
123 1zbd_B Rabphilin-3A; G protein 29.4 19 0.00066 31.5 1.5 52 31-82 54-107 (134)
124 2d8v_A Zinc finger FYVE domain 29.3 17 0.00058 28.8 1.0 31 32-68 8-39 (67)
125 1x62_A C-terminal LIM domain p 28.8 45 0.0015 25.4 3.4 37 32-83 15-51 (79)
126 1wd2_A Ariadne-1 protein homol 28.5 6.6 0.00022 29.9 -1.5 38 32-69 6-46 (60)
127 1joc_A EEA1, early endosomal a 28.4 26 0.0009 30.1 2.2 33 32-65 69-101 (125)
128 3c6w_A P28ING5, inhibitor of g 27.8 5.3 0.00018 30.2 -2.1 43 32-81 9-57 (59)
129 3t7l_A Zinc finger FYVE domain 27.4 29 0.001 28.0 2.2 34 32-66 20-53 (90)
130 1wfk_A Zinc finger, FYVE domai 26.9 33 0.0011 27.8 2.3 33 32-65 9-41 (88)
131 2vnf_A ING 4, P29ING4, inhibit 26.9 5.4 0.00018 30.2 -2.3 41 32-81 10-58 (60)
132 2g6q_A Inhibitor of growth pro 26.5 5.6 0.00019 30.5 -2.2 43 32-81 11-59 (62)
133 3ask_A E3 ubiquitin-protein li 26.4 29 0.00098 33.2 2.2 48 32-81 174-224 (226)
134 2ct7_A Ring finger protein 31; 26.0 7.7 0.00026 31.1 -1.6 43 35-77 28-71 (86)
135 2ysm_A Myeloid/lymphoid or mix 25.9 16 0.00055 30.2 0.3 47 32-80 7-55 (111)
136 1xwh_A Autoimmune regulator; P 25.5 5.4 0.00019 30.5 -2.5 46 31-81 7-54 (66)
137 1x6e_A Zinc finger protein 24; 25.3 47 0.0016 23.9 2.8 43 31-89 13-58 (72)
138 1dvp_A HRS, hepatocyte growth 25.1 27 0.00091 32.3 1.7 34 31-65 160-193 (220)
139 2jmo_A Parkin; IBR, E3 ligase, 24.9 11 0.00036 30.0 -0.9 37 33-69 26-70 (80)
140 1z2q_A LM5-1; membrane protein 24.6 35 0.0012 27.2 2.1 34 32-66 21-54 (84)
141 2puy_A PHD finger protein 21A; 24.0 7.1 0.00024 29.2 -2.1 45 32-81 5-51 (60)
142 1vfy_A Phosphatidylinositol-3- 23.6 40 0.0014 26.1 2.2 33 32-65 11-43 (73)
143 2yw8_A RUN and FYVE domain-con 23.6 35 0.0012 27.0 1.9 33 32-65 19-51 (82)
144 1rut_X Flinc4, fusion protein 23.6 27 0.00094 31.2 1.4 50 31-84 31-80 (188)
145 2o35_A Hypothetical protein DU 23.2 29 0.001 29.5 1.4 13 58-70 42-54 (105)
146 3fyb_A Protein of unknown func 22.8 30 0.001 29.4 1.4 13 58-70 41-53 (104)
147 3mpx_A FYVE, rhogef and PH dom 22.0 19 0.00065 35.9 0.0 36 32-68 375-410 (434)
148 3zyq_A Hepatocyte growth facto 21.9 34 0.0012 32.0 1.7 34 31-65 163-196 (226)
149 1x4i_A Inhibitor of growth pro 21.8 12 0.0004 29.3 -1.2 47 32-82 6-55 (70)
150 2jmi_A Protein YNG1, ING1 homo 21.6 9.8 0.00033 31.4 -1.8 47 31-81 25-75 (90)
151 2cor_A Pinch protein; LIM doma 21.4 61 0.0021 24.8 2.9 39 31-84 14-52 (79)
152 2kwj_A Zinc finger protein DPF 21.1 20 0.00068 30.1 -0.0 47 34-80 3-59 (114)
153 1x4u_A Zinc finger, FYVE domai 21.0 41 0.0014 26.7 1.8 32 32-64 14-45 (84)
154 3a1b_A DNA (cytosine-5)-methyl 20.5 59 0.002 29.6 2.9 45 32-81 79-133 (159)
155 2co8_A NEDD9 interacting prote 20.4 77 0.0026 24.4 3.3 40 31-84 14-53 (82)
156 2rgt_A Fusion of LIM/homeobox 20.1 83 0.0028 27.4 3.8 45 31-84 32-76 (169)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=106.44 Aligned_cols=66 Identities=21% Similarity=0.593 Sum_probs=53.1
Q ss_pred CCcc-CccccccccccccccCCCcceecc-cCCcchHhHHHHHHhcCCCCCCCCCccccc------cchhhhhhhccCC
Q 039031 27 GKSF-RTVSCSICLELVTDNGDRSWAKLQ-CGHQFHLDCIGSAFNSKGAMQCPNCRKIEK------GQWLYSNGCRSFP 97 (452)
Q Consensus 27 ~e~l-edl~CpICLe~f~dP~~~~ivlL~-CGH~FC~~CI~swl~skg~~~CPlCRk~~k------~N~~L~nlve~~k 97 (452)
.+.+ +++.|+||++.|.+| ++++ |||+||..||..|+...+...||+||+.+. .|..+.++++.++
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDA-----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFK 80 (92)
T ss_dssp CCCCCTTTEETTTTEECSSC-----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCc-----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHH
Confidence 3344 689999999999999 8899 999999999999998666579999999862 2666666665443
No 2
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=4.3e-12 Score=100.15 Aligned_cols=49 Identities=27% Similarity=0.728 Sum_probs=43.9
Q ss_pred CccccccccccccccCCCcceecc-cCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQ-CGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~-CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+++.|+||++.+.+| +.++ |||.||..||..|+...+...||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDA-----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTC-----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCC-----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 679999999999999 8898 999999999999998765569999999743
No 3
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=97.86 Aligned_cols=50 Identities=36% Similarity=0.759 Sum_probs=44.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC----CCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK----GAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk----g~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|+... +...||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEP-----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSC-----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcc-----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 678999999999999 889999999999999999873 25799999998654
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.5e-12 Score=97.64 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=44.9
Q ss_pred cCCcc-CccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 26 RGKSF-RTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 26 e~e~l-edl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
+.+.+ +++.|+||++.+.+| +.+ +|||.||..||..|++.+ ..||+||+.+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDA-----TTITECLHTFCKSCIVRHFYYS--NRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSC-----EECSSSCCEECHHHHHHHHHHC--SSCTTTCCCCCSS
T ss_pred hHhhcCCCCCCCCCChHHHCc-----CEECCCCCHHHHHHHHHHHHcC--CcCCCcCcccCcc
Confidence 33344 678999999999998 665 999999999999999864 5999999987653
No 5
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.2e-11 Score=97.17 Aligned_cols=47 Identities=21% Similarity=0.470 Sum_probs=42.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+.+.|+||++.+.+| ++++|||.||..||..|+... ..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFRAT--PRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHHHC--SBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHHCC--CcCCCcCcccc
Confidence 578999999999999 889999999999999999854 48999999865
No 6
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2e-11 Score=96.54 Aligned_cols=50 Identities=40% Similarity=0.868 Sum_probs=43.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc----CCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS----KGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s----kg~~~CPlCRk~~k~ 85 (452)
+.+.|+||++.+.+| +.++|||.||..||..|+.. .+...||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQP-----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSC-----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCc-----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 678999999999998 78899999999999999986 235799999998654
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.17 E-value=5.8e-12 Score=105.10 Aligned_cols=60 Identities=22% Similarity=0.446 Sum_probs=48.8
Q ss_pred CccccccccccccccCCCccee-cccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAK-LQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivl-L~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~ 96 (452)
+++.|+||++.+.+| +. ++|||.||..||..|+...+ ..||+||+.+.. +..+.++++.+
T Consensus 21 ~~~~C~IC~~~~~~p-----~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA-----RLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQLRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCEECTTHHHHHHHH
T ss_pred CCCCCccCCccccCc-----cccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCHHHhHhhHHHHHHHHHH
Confidence 689999999999999 77 99999999999999998653 589999998754 34444444433
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.6e-11 Score=96.24 Aligned_cols=54 Identities=30% Similarity=0.692 Sum_probs=43.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-CCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~~k~ 85 (452)
+.+.|+||++.+.+. +...+.++|||.||..||..|++.+ +...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 678999999999882 1112888999999999999999864 34699999997654
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=5.9e-12 Score=99.13 Aligned_cols=50 Identities=36% Similarity=0.729 Sum_probs=43.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-----CCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-----GAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-----g~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|+... ....||+||+.+..
T Consensus 11 ~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEP-----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSC-----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCe-----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 678999999999999 788999999999999998752 25799999998754
No 10
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.16 E-value=8.8e-12 Score=98.46 Aligned_cols=58 Identities=19% Similarity=0.399 Sum_probs=48.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve 94 (452)
+++.|+||++.+.+| ++++|||.||..||..|+.. +...||+||+.+.. |..+.++++
T Consensus 7 ~~~~C~IC~~~~~~P-----v~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l~~~i~ 69 (78)
T 1t1h_A 7 EYFRCPISLELMKDP-----VIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSLIA 69 (78)
T ss_dssp SSSSCTTTSCCCSSE-----EEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHHHH
T ss_pred ccCCCCCccccccCC-----EEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHHHHHHH
Confidence 579999999999999 88999999999999999974 34689999998653 555555554
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.6e-11 Score=91.79 Aligned_cols=49 Identities=20% Similarity=0.590 Sum_probs=42.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|+.. ....||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-----KQTECGHRFCESCMAALLSS-SSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSC-----CCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCe-----eECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCCh
Confidence 678999999999999 77999999999999999963 33589999997654
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.1e-11 Score=94.14 Aligned_cols=49 Identities=27% Similarity=0.540 Sum_probs=43.3
Q ss_pred cCccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 30 FRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 30 ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.+++.|+||++.+.++ +.++|||.||..||..|+..+ ..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP-----VSLPCKHVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE-----EEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC-----EEccCCCHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 3678999999999998 889999999999999998755 599999998754
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.8e-11 Score=90.36 Aligned_cols=52 Identities=33% Similarity=0.719 Sum_probs=43.2
Q ss_pred CccccccccccccccC--CCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNG--DRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~--~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+...|+||++.+.++. ....+.++|||.||..||..|+..+ ..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence 5789999999988762 2344789999999999999999864 49999999764
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=7.3e-12 Score=106.14 Aligned_cols=48 Identities=27% Similarity=0.750 Sum_probs=42.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+++.|+||++.+.+| +.++|||.||..||..|+.. +...||+||+.+.
T Consensus 14 ~~~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEP-----VTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSC-----EECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCce-----eEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 679999999999999 88999999999999999874 3369999999875
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=6.6e-11 Score=93.39 Aligned_cols=51 Identities=33% Similarity=0.642 Sum_probs=42.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|+||++.|.++. ..+.++|||.||..||..|++.+ ..||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 5789999999988662 34667999999999999999855 499999997654
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=103.48 Aligned_cols=58 Identities=26% Similarity=0.490 Sum_probs=48.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc------chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG------QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~------N~~L~nlve 94 (452)
+++.|+||++.+.+| +.++|||.||..||..|+.. +...||+||+.+.. |..+.++++
T Consensus 51 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~ 114 (124)
T 3fl2_A 51 ETFQCICCQELVFRP-----ITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSYAMQVNQPLQTVLN 114 (124)
T ss_dssp HHTBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCCCHHHHHHHH
T ss_pred cCCCCCcCChHHcCc-----EEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 568999999999999 88999999999999999984 33599999998743 556666654
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=90.63 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=43.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc-CCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS-KGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s-kg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|++. .....||+||+.+..
T Consensus 19 ~~~~C~IC~~~~~~~-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKP-----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSE-----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCe-----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 678999999999998 88899999999999999873 234699999997653
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.08 E-value=3.6e-11 Score=105.53 Aligned_cols=48 Identities=35% Similarity=0.761 Sum_probs=42.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| ++++|||.||..||..|+..+ ..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA-----VTLNCAHSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE-----EEETTSCEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc-----eECCCCCCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 467899999999999 899999999999999999855 489999998753
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=86.27 Aligned_cols=44 Identities=34% Similarity=0.876 Sum_probs=38.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc-CCCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS-KGAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s-kg~~~CPlC 79 (452)
+.+.|+||++.+.+| +.++|||.||..||..|+.. +....||+|
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP-----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc-----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 678999999999999 78999999999999999764 345699998
No 20
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.07 E-value=2.9e-11 Score=99.91 Aligned_cols=60 Identities=25% Similarity=0.534 Sum_probs=49.5
Q ss_pred CccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSFP 97 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~k 97 (452)
+.+.|+||++.+.+| +.+ +|||.||..||..|+..+ ..||+||+.+.. |..+.++++.++
T Consensus 21 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 21 DLLRCGICFEYFNIA-----MIIPQCSHNYCSLCIRKFLSYK--TQCPTCCVTVTEPDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCc-----CEECCCCCHhhHHHHHHHHHCC--CCCCCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 578999999999998 666 899999999999999854 599999998753 666666665443
No 21
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.07 E-value=9.9e-11 Score=95.56 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=48.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve 94 (452)
+++.|+||++.+.+| ++++|||+||..||..|+... .+||.|+..+.. |..+.++++
T Consensus 13 ~~~~CpI~~~~m~dP-----V~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~~~~l~pn~~L~~~i~ 74 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP-----VRLPSGTVMDRSIILRHLLNS--PTDPFNRQMLTESMLEPVPELKEQIQ 74 (85)
T ss_dssp TTTBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred hheECcccCchhcCC-----eECCCCCEECHHHHHHHHhcC--CCCCCCcCCCChHhcchHHHHHHHHH
Confidence 579999999999999 999999999999999999854 599999998753 555555554
No 22
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=90.85 Aligned_cols=50 Identities=24% Similarity=0.508 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.+.++. .++.++|+|.||..||..|++.+. .||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~--~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRD--ELGICPCKHAFHRKCLIKWLEVRK--VCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSS--CEEEETTTEEEEHHHHHHHHHHCS--BCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCC--cEEEcCCCCEecHHHHHHHHHcCC--cCCCcCcccc
Confidence 5679999999988762 235669999999999999998654 8999999754
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.04 E-value=9.8e-11 Score=90.31 Aligned_cols=53 Identities=32% Similarity=0.720 Sum_probs=44.0
Q ss_pred Ccccccccccccccc--CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDN--GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP--~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.++ .....+.++|||.||..||..|++.+ ..||+||+.+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 568999999998875 23445789999999999999999865 499999997654
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=86.34 Aligned_cols=44 Identities=36% Similarity=0.948 Sum_probs=39.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlC 79 (452)
+++.|+||++.+.+| +.++|||.||..||..|++.. ....||+|
T Consensus 19 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP-----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC-----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe-----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 678999999999999 889999999999999999842 34689998
No 25
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=1.8e-10 Score=96.79 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=49.9
Q ss_pred CccccccccccccccCCCcceecccC-CcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCG-HQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CG-H~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~ 96 (452)
+++.|+||++.|.+| ++++|| |+||..||..|+... .+||+|+..+.. |..+.++++.+
T Consensus 21 ~~~~CpI~~~~m~dP-----V~~~cG~htf~r~cI~~~l~~~--~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP-----VVLPSSRVTVDRSTIARHLLSD--QTDPFNRSPLTMDQIRPNTELKEKIQRW 85 (98)
T ss_dssp TTTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHTTTS--CBCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred HhcCCcCccccccCC-----eECCCCCeEECHHHHHHHHHhC--CCCCCCCCCCChhhceEcHHHHHHHHHH
Confidence 679999999999999 999999 999999999999854 489999998753 55666666533
No 26
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=95.15 Aligned_cols=63 Identities=21% Similarity=0.418 Sum_probs=51.0
Q ss_pred CccccccccccccccCCCcceecc-cCCcchHhHHHHHHhcC----CCCCCCC--Cccc-cc-----cchhhhhhhccCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQ-CGHQFHLDCIGSAFNSK----GAMQCPN--CRKI-EK-----GQWLYSNGCRSFP 97 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~-CGH~FC~~CI~swl~sk----g~~~CPl--CRk~-~k-----~N~~L~nlve~~k 97 (452)
+++.|+||++.|.+| ++++ |||+||..||..|+... +...||+ |++. +. .|..+.++++.++
T Consensus 6 ~~~~CPI~~~~~~dP-----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP-----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp SCCBCTTTCSBCSSE-----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred cEeECcCcCchhcCC-----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 578999999999999 8885 99999999999999863 3469999 9865 43 3777777776554
Q ss_pred C
Q 039031 98 E 98 (452)
Q Consensus 98 ~ 98 (452)
.
T Consensus 81 ~ 81 (94)
T 2yu4_A 81 K 81 (94)
T ss_dssp T
T ss_pred H
Confidence 4
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=103.89 Aligned_cols=60 Identities=25% Similarity=0.526 Sum_probs=49.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc------chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG------QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~------N~~L~nlve~~ 96 (452)
+.+.|+||++.+.+| ++++|||.||..||..|+.. +...||+||..+.. |..+.++++.+
T Consensus 77 ~~~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP-----VTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNYIMIPNEILQTLLDLF 142 (150)
T ss_dssp HHTBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred cCCEeecCChhhcCC-----EEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 568899999999999 88999999999999999985 33589999998653 55566666543
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.9e-10 Score=88.01 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=42.7
Q ss_pred Cccccccccc-cccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLE-LVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe-~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++ .+.++ ....+.++|||.||..||.+|+... ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCcccc
Confidence 3678999999 88887 3333568999999999999998743 4689999998754
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.99 E-value=1.9e-10 Score=96.58 Aligned_cols=59 Identities=19% Similarity=0.407 Sum_probs=48.0
Q ss_pred CccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcccccc---------chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG---------QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~---------N~~L~nlve~~ 96 (452)
+++.|+||++.+.+| +.+ +|||.||..||..|+... ..||+||+.+.. |..+.++++.+
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~ 82 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA-----TTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKL 82 (108)
T ss_dssp GGTBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHH
T ss_pred CcCCCccCChHHhCc-----CEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccccCcccccCcCHHHHHHHHHH
Confidence 578999999999999 776 999999999999999865 599999998653 44555555433
No 30
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.99 E-value=3.8e-10 Score=87.05 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=41.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.+... ...+.++|||.||..||..|+..+. .||+||+.+.
T Consensus 13 ~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEG--EDVRRLPCMHLFHQVCVDQWLITNK--KCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSS--SCEEECTTSCEEEHHHHHHHHHHCS--BCTTTCSBSC
T ss_pred CCCCCeeCCccccCC--CcEEEeCCCCHHHHHHHHHHHHcCC--CCcCcCcccc
Confidence 457899999988643 2247789999999999999998654 7999999764
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.98 E-value=3.2e-10 Score=83.45 Aligned_cols=50 Identities=28% Similarity=0.634 Sum_probs=41.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+..|+||++.+.+. +...+.++|||.||..||..|+... ..||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 56899999998763 3345889999999999999999866 59999998753
No 32
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.98 E-value=2e-10 Score=103.11 Aligned_cols=62 Identities=27% Similarity=0.572 Sum_probs=49.4
Q ss_pred CccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcccccc------chhhhhhhccCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG------QWLYSNGCRSFPE 98 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~------N~~L~nlve~~k~ 98 (452)
+.+.|+||++.+.+| +.+ +|||.||..||..|+... ...||+||+.+.. +..+.+++..+..
T Consensus 53 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLKNT-----MTTKECLHRFCADCIITALRSG-NKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCSSE-----EEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhhCc-----CEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 678999999999998 665 999999999999999852 3589999998742 5666666665443
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=86.10 Aligned_cols=52 Identities=31% Similarity=0.721 Sum_probs=43.0
Q ss_pred cccccccccccccc--CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDN--GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP--~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++.|+||++.+.++ .....+.++|||.||..||..|++.+ ..||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCCCCccCCc
Confidence 57999999998875 23345788999999999999999864 499999997654
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.95 E-value=2.1e-10 Score=95.83 Aligned_cols=50 Identities=34% Similarity=0.752 Sum_probs=43.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC-CCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK-GAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk-g~~~CPlCRk~~k~ 85 (452)
+.+.|+||++.+.+| +.++|||.||..||..|+..+ +...||+||+.+..
T Consensus 20 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEP-----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSC-----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCe-----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 468999999999999 789999999999999999854 34689999998654
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.95 E-value=7.1e-10 Score=93.45 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=49.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~ 96 (452)
+++.|+||++.|.+| ++++|||+||..||..|+... .+||.|+..+.. |..+.++++.+
T Consensus 28 ~~~~CpI~~~~m~dP-----V~~~cGhtf~r~~I~~~l~~~--~~cP~~~~~l~~~~L~pn~~Lk~~I~~~ 91 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP-----VRLPSGTIMDRSIILRHLLNS--PTDPFNRQTLTESMLEPVPELKEQIQAW 91 (100)
T ss_dssp TTTBCTTTCSBCSSE-----EEETTTEEEEHHHHHHHTTSC--SBCSSSCCBCCTTSSEECHHHHHHHHHH
T ss_pred HhhCCcCccCcccCC-----eECCCCCEEchHHHHHHHHcC--CCCCCCCCCCChhhceECHHHHHHHHHH
Confidence 689999999999999 999999999999999999843 599999998753 66666666543
No 36
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.94 E-value=3.4e-10 Score=95.34 Aligned_cols=53 Identities=30% Similarity=0.683 Sum_probs=41.1
Q ss_pred ccccccccccccccC-------------CCcceecccCCcchHhHHHHHHhc---CCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNG-------------DRSWAKLQCGHQFHLDCIGSAFNS---KGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~-------------~~~ivlL~CGH~FC~~CI~swl~s---kg~~~CPlCRk~~k 84 (452)
+..|+||++.|.++. ...+.+++|+|.||..||..|+.. .....||+||+.+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 468999999997652 123347899999999999999953 23469999999764
No 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=9.1e-10 Score=94.03 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=43.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|+.... ..||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe-----EECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 678999999999999 8899999999999999998654 389999998764
No 38
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.92 E-value=5e-10 Score=91.82 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=40.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.+... ...+.++|||.||..||..|+..+ ..||+||+.+.
T Consensus 39 ~~~~C~IC~~~~~~~--~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG--DVATELPCHHYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT--CEEEEETTTEEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC--CcEEecCCCChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 567899999988763 123678999999999999999865 49999999754
No 39
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=4.1e-10 Score=106.60 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=50.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~ 96 (452)
+.+.|+||++.+.+| ++++|||+||..||..|+...+ ..||+|+.++.. |..+.++++.+
T Consensus 207 ~~~~c~i~~~~~~dP-----v~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 207 DYLCGKISFELMREP-----CITPSGITYDRKDIEEHLQRVG-HFNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp STTBCTTTCSBCSSE-----EECSSCCEEETTHHHHHHHHTC-SSCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred cccCCcCcCCHhcCC-----eECCCCCEECHHHHHHHHHHCC-CCCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 679999999999999 9999999999999999998654 359999998763 66666666544
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=5e-10 Score=88.02 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=41.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.+..+. .++.++|+|.||..||..|++.+ ..||+||+.+.
T Consensus 22 ~~~~C~IC~~~~~~~~--~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ--LLRVLPCNHEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTC--EEEEETTTEEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCC--eEEEECCCCHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 5678999999987662 34678999999999999999865 48999999764
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.92 E-value=4.4e-10 Score=82.86 Aligned_cols=49 Identities=35% Similarity=0.763 Sum_probs=39.3
Q ss_pred CccccccccccccccCCCcceecc-cCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQ-CGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~-CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
++..|+||++.+.+.. . .+.++ |||.||..||..|++.+ ..||+||+.+
T Consensus 4 ~~~~C~IC~~~~~~~~-~-~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGE-E-ARFLPRCGHGFHAECVDMWLGSH--STCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTS-C-CEECSSSCCEECTTHHHHTTTTC--CSCSSSCCCS
T ss_pred CCCcCccCCccccCCC-c-eEECCCCCCcccHHHHHHHHHcC--CcCcCCCCEe
Confidence 3578999999987642 2 25565 99999999999999764 4899999865
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=5.3e-11 Score=101.59 Aligned_cols=58 Identities=19% Similarity=0.448 Sum_probs=48.5
Q ss_pred CccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSFP 97 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~k 97 (452)
+++.|+||++.+.+| +.+ +|||.||..||..|+. ..||+||+.+.. |..+.++++.+.
T Consensus 21 ~~~~C~IC~~~~~~p-----v~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~ 84 (117)
T 1jm7_B 21 KLLRCSRCTNILREP-----VCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLKINRQLDSMIQLCS 84 (117)
T ss_dssp HTTSCSSSCSCCSSC-----BCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCCChHhhCc-----cEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccccccccHHHHHHHHHHH
Confidence 679999999999999 788 9999999999999987 489999998753 666666665443
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.88 E-value=8.7e-10 Score=84.61 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=40.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+..|+||++.+.++ .+.++|||.||..||..|+..+ ..||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~~----~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNY----SMALPCLHAFCYVCITRWIRQN--PTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSC----EEETTTTEEESTTHHHHHHHHS--CSTTTTCCCCC
T ss_pred CCCCeeCCccccCC----cEecCCCCeeHHHHHHHHHhCc--CcCcCCChhhH
Confidence 46899999998875 3788999999999999999865 49999999764
No 44
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1e-09 Score=88.46 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=39.4
Q ss_pred Ccccccccccccccc----------CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDN----------GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP----------~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.|.++ ++..++++.|+|.||..||.+|+..+. +||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCcCCCcc
Confidence 455677887777542 233455667999999999999998664 9999999754
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1.2e-09 Score=92.49 Aligned_cols=49 Identities=31% Similarity=0.659 Sum_probs=43.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.+| +.++|||.||..||..|+...+ ..||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADP-----VETSCKHLFCRICILRCLKVMG-SYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCc-----EEcCCCCcccHHHHHHHHhHCc-CcCCCCCCCCCH
Confidence 678999999999999 8899999999999999998633 589999998754
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=8.4e-10 Score=85.32 Aligned_cols=46 Identities=30% Similarity=0.654 Sum_probs=39.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+...|+||++.+.+ +.++|||.||..||..|+... ..||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 59 (70)
T 2ecn_A 14 DEEECCICMDGRAD------LILPCAHSFCQKCIDKWSDRH--RNCPICRLQMT 59 (70)
T ss_dssp CCCCCSSSCCSCCS------EEETTTEEECHHHHHHSSCCC--SSCHHHHHCTT
T ss_pred CCCCCeeCCcCccC------cccCCCCcccHHHHHHHHHCc--CcCCCcCCccc
Confidence 57899999998754 678999999999999998743 59999999764
No 47
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=2.2e-09 Score=96.60 Aligned_cols=90 Identities=20% Similarity=0.330 Sum_probs=61.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccCCCC---CCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSFPEF---SMD 102 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~k~~---~~~ 102 (452)
+++.|+||++.+.+| +.++|||+||..||..|+..+. ..||+||..+.. +..+.+++..++.. ...
T Consensus 17 ~~~~C~IC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v~C~n~GC 90 (170)
T 3hcs_A 17 SKYECPICLMALREA-----VQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGC 90 (170)
T ss_dssp GGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCGGGCEECHHHHHHHHTSEEECCSTTC
T ss_pred CCCCCCCCChhhcCc-----EECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcchhhhhhhHHHHHHHhhcccCCCCCCC
Confidence 679999999999999 8899999999999999998643 489999998764 22333333322211 244
Q ss_pred cccccccccccccCccCcccccCC
Q 039031 103 DWTHDEDLYDLSYSEMSFGVHWCP 126 (452)
Q Consensus 103 e~~~eEd~~d~e~sE~p~~~~~CP 126 (452)
.|......+.....+.++....||
T Consensus 91 ~~~~~~~~l~~H~~~C~~~~v~C~ 114 (170)
T 3hcs_A 91 LHKMELRHLEDHQAHCEFALMDCP 114 (170)
T ss_dssp CCEEEGGGHHHHHTTCTTSEEECT
T ss_pred CceecHhHHHHHHhcCCceeeECC
Confidence 444433333333455566666676
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=2.2e-09 Score=91.12 Aligned_cols=53 Identities=32% Similarity=0.737 Sum_probs=44.0
Q ss_pred Ccccccccccccccc--CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDN--GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP--~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+.++ .....+.++|||.||..||.+|++.+. .||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 468999999999876 233458899999999999999998653 99999997654
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.78 E-value=5e-09 Score=84.72 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+++.|+||++.+... +..+..++|||.||..||..++.. ....||+||+.+..
T Consensus 10 ~~~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCccc-cccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 578999999988532 222222359999999999998864 34699999998754
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.1e-09 Score=104.24 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=50.9
Q ss_pred CccccccccccccccCCCccee-cccCCcchHhHHHHHHhcCCCCCCCC--Ccccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAK-LQCGHQFHLDCIGSAFNSKGAMQCPN--CRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivl-L~CGH~FC~~CI~swl~skg~~~CPl--CRk~~k~-----N~~L~nlve~~ 96 (452)
.++.|+||++.|.+| ++ +.|||.||..||..|+...+...||+ |++.+.. |..+.++++..
T Consensus 180 ~el~CPIcl~~f~DP-----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 180 IELTCPITCKPYEAP-----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIA 248 (267)
T ss_dssp CCSBCTTTSSBCSSE-----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHH
T ss_pred eeeECcCccCcccCC-----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHH
Confidence 578999999999999 76 59999999999999998655578999 9997653 66777776543
No 51
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.77 E-value=2.9e-09 Score=99.03 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=50.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhccC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCRSF 96 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve~~ 96 (452)
+.+.|+||++.|.+| ++++|||+||..||..|+...+. +||.|+.++.. |..+.++++.+
T Consensus 105 ~~f~CPI~~elm~DP-----V~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 105 DYLCGKISFELMREP-----CITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp GGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred HhhcccCccccCCCC-----eECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 679999999999999 99999999999999999986543 79999998753 66666666533
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=2.1e-09 Score=80.86 Aligned_cols=44 Identities=25% Similarity=0.538 Sum_probs=38.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+.+.|+||++.+.+| +.++|||.||..||.. ....||+||+.+.
T Consensus 5 ~~~~C~IC~~~~~~p-----~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP-----KLLPCLHTLCSGCLEA-----SGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCC-----SCSTTSCCSBTTTCSS-----SSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCCe-----EEcCCCCcccHHHHcc-----CCCCCCcCCcEee
Confidence 468999999999999 8899999999999976 2358999999764
No 53
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.74 E-value=6e-09 Score=88.98 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=41.7
Q ss_pred Ccccccccccccccc-------------CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDN-------------GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP-------------~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|+||++.|.++ .+..++.++|+|.||..||..|+..+ .+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--CcCcCCCCcce
Confidence 456899999988754 12345778999999999999999865 48999999753
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.72 E-value=1.8e-09 Score=95.99 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=41.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
+++.|+||++.+.+| +.++|||.||..||..|+... ...||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~p-----v~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-----FQAQCGHRYCSFCLASILSSG-PQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSE-----EECTTSCEEEHHHHHHHGGGS-CEECHHHHHTT
T ss_pred cCcCCCCCChhhcCc-----EECCCCCccCHHHHHHHHhcC-CCCCCCCCCcc
Confidence 678999999999999 889999999999999999744 35899999864
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.58 E-value=9.9e-09 Score=81.27 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=39.2
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|+||++.+.++ +.++|||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~-----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE-----EEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE-----EEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 578999999999998 89999999 999999877 389999997653
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.55 E-value=3.1e-08 Score=83.95 Aligned_cols=54 Identities=31% Similarity=0.716 Sum_probs=44.1
Q ss_pred Ccccccccccccccc--CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccc
Q 039031 31 RTVSCSICLELVTDN--GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQ 86 (452)
Q Consensus 31 edl~CpICLe~f~dP--~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N 86 (452)
+...|+||++.+.++ .....+.++|||.||..||..|++.. ..||+||+.+..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 568899999998764 22344788999999999999999865 4999999987654
No 57
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.53 E-value=1e-08 Score=89.30 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=0.4
Q ss_pred cccccccccccccc-------------CCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 32 TVSCSICLELVTDN-------------GDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP-------------~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
+..|+||++.|.++ .+..++.++|+|.||..||..|+..+ .+||+||+.+
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~Cr~~~ 110 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLDNREW 110 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCCCCee
Confidence 46899999998763 12234557999999999999999875 4899999974
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=6.6e-08 Score=75.92 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=37.7
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|.||++...++ ++++|||. ||..|+.. . ..||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~----~--~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW-----VLLPCRHTCLCDGCVKY----F--QQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCC-----EETTTTBCCSCTTHHHH----C--SSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCE-----EEECCCChhhhHHHHhc----C--CCCCCCCcchhc
Confidence 578999999998887 99999999 99999973 1 489999997654
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=7.8e-08 Score=78.19 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=41.7
Q ss_pred CccccccccccccccCCCcceecccC-----CcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCG-----HQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CG-----H~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|.||++.+.+. +. ++++|. |.||..||.+|+..++...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~-~~--l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDE-SP--LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSS-SC--EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCC-Ce--eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 456899999987543 22 568996 99999999999997766799999997643
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.50 E-value=5.1e-08 Score=100.24 Aligned_cols=48 Identities=35% Similarity=0.575 Sum_probs=41.7
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
...|+||++.+.++ +.++|||.||..||..|+... ...||+||+.+..
T Consensus 332 ~~~C~ICle~~~~p-----v~lpCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV-----KIEPCGHLMCTSCLTSWQESE-GQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE-----EEETTCCEECHHHHHHHHHHT-CSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe-----EEeCCCChhhHHHHHHHHhcC-CCCCCCCCCccCC
Confidence 36899999999998 999999999999999999832 3589999998754
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.48 E-value=5.6e-08 Score=75.20 Aligned_cols=47 Identities=21% Similarity=0.469 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCcceec--ccCCc-chHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL--QCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL--~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
++..|.||++...+. +.+ +|||. ||..|+..|++.+ ..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG-----CIVHGKTGHLMACFTCAKKLKKRN--KPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE-----EEEETTEEEEEECHHHHHHHHHTT--CCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE-----EEECCCCCChhhHHHHHHHHHHcC--CcCCCcCcchh
Confidence 456899999988877 665 99999 8999999998754 48999999764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2e-08 Score=79.48 Aligned_cols=44 Identities=23% Similarity=0.522 Sum_probs=37.8
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|+||++.+.++ +.++|||. ||..|+... ..||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~~~-----~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI-----VFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCB-----CCSSSCCCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCE-----EEecCCCHHHHHHHhhCC------CCCccCCceecC
Confidence 567899999999998 88999999 999999632 489999997654
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=1.7e-08 Score=82.83 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=38.3
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcC------CCCCCCC--Cccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK------GAMQCPN--CRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk------g~~~CPl--CRk~ 82 (452)
.+.|+||++.+..+. .+.+++|||.||..||..++..+ ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~--~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ--MTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGG--EEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccccc--ceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999988761 11224799999999999998752 2368999 9998
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.6e-07 Score=75.75 Aligned_cols=50 Identities=28% Similarity=0.667 Sum_probs=40.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|.||.+.+... .....|+|.||..||.+||+.....+||+||+.+.
T Consensus 14 ~i~~C~IC~~~i~~g----~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSS----EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccC----CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 457899999998743 14449999999999999998765569999998653
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.40 E-value=1.3e-07 Score=72.96 Aligned_cols=46 Identities=24% Similarity=0.516 Sum_probs=38.9
Q ss_pred ccccccccccccccCCCcceec--ccCCc-chHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL--QCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL--~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+..|.||++...++ +++ +|||. ||..|+..|++.. ..||+||+.+.
T Consensus 7 ~~~C~IC~~~~~~~-----~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-----NIIHGRTGHLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-----EEEETTEEEEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe-----EEEecCCCCHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 46899999988777 555 99998 9999999988754 48999999764
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.24 E-value=3.8e-07 Score=70.46 Aligned_cols=47 Identities=11% Similarity=0.084 Sum_probs=41.4
Q ss_pred ccccccccccccccCCCcceec-ccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
.+.|+||++.+.+| +++ .|||+|++.||.+|+..++ +||++++++..
T Consensus 3 ~~~CpIs~~~m~dP-----V~~~~sG~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP-----VLSPKSRTIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE-----EEETTTTEEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC-----EEeCCCCcEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 47899999999999 888 9999999999999998664 69999997654
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=1.9e-07 Score=75.22 Aligned_cols=44 Identities=25% Similarity=0.595 Sum_probs=38.4
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|.||++.+.++ +.++|||. ||..|+..+ ..||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~~~-----v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINS-----TFCPCGHTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCE-----EEETTCBCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcE-----EEECCCCHHHHHHHHHhc------CcCCCCCchhhC
Confidence 567899999999888 99999999 999999754 289999998754
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.14 E-value=4e-07 Score=92.12 Aligned_cols=44 Identities=32% Similarity=0.758 Sum_probs=39.3
Q ss_pred CccccccccccccccCCCcceecccCCc-chHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQ-FHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~-FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
++..|+||++.+.++ +.++|||. ||..|+..| ..||+||+.+..
T Consensus 294 ~~~~C~IC~~~~~~~-----v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV-----VFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE-----EEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce-----EEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 578999999999999 99999999 999999876 389999998654
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.78 E-value=1.2e-05 Score=61.94 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=37.8
Q ss_pred ccccccccccccccCCCcceecccC--C---cchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCG--H---QFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CG--H---~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
...|.||++...++ .+++|. + .||..||.+|+..++...||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~-----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNE-----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCC-----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCc-----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46899999874443 457764 4 899999999998766679999998753
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.78 E-value=6.1e-06 Score=84.05 Aligned_cols=55 Identities=25% Similarity=0.536 Sum_probs=40.8
Q ss_pred CccccccccccccccCC---CcceecccCCcchHhHHHHHHhcCCC---------CCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGD---RSWAKLQCGHQFHLDCIGSAFNSKGA---------MQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~---~~ivlL~CGH~FC~~CI~swl~skg~---------~~CPlCRk~~k~ 85 (452)
+...|+||++.+.+.+. +......|+|.||..||.+|++.... ..||+||+++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 46789999998776222 22234689999999999999975311 379999998654
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.39 E-value=9.5e-05 Score=63.07 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.3
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
.|.+|...+..- ..+++|.|.||++|+..|.+.+. ..||.|+..+.
T Consensus 3 fC~~C~~Pi~iy----gRmIPCkHvFCydCa~~~~~~~~-k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY----GRMIPCKHVFCYDCAILHEKKGD-KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE----EEEETTCCEEEHHHHHHHHHTTC-CBCTTTCCBCS
T ss_pred ecCccCCCeEEE----eeeccccccHHHHHHHHHHhccC-CCCcCcCCeee
Confidence 588998887654 37899999999999999876433 49999999754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.60 E-value=0.0011 Score=63.75 Aligned_cols=49 Identities=29% Similarity=0.685 Sum_probs=39.7
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
...|.||.+.+... .....|++.||..|+..|++..+...||.|+..+.
T Consensus 180 i~~C~iC~~iv~~g----~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC----EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC----cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 46799999987744 24556999999999999998766679999988653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.20 E-value=0.049 Score=46.10 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCcCCccCccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCc
Q 039031 1 MGLGSNDDDDLVVDDGDGDVGDCDSRGKSFRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCR 80 (452)
Q Consensus 1 mG~g~e~eda~~~DdG~~~~g~~sse~e~ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCR 80 (452)
||+...++..+...+.. .. -.+...++-+.|..|.-..+ . .+.-..|-+|+.|+...+.... .||+|+
T Consensus 1 MG~~~Sk~~~~~~~~ra--~~--~~d~s~~G~~nCKsCWf~~k-~-----LV~C~dHYLCl~CLtlmL~~Sd--rCpIC~ 68 (99)
T 2ko5_A 1 MGNKQAKAPESKDSPRA--SL--IPDATHLGPQFCKSCWFENK-G-----LVECNNHYLCLNCLTLLLSVSN--RCPICK 68 (99)
T ss_dssp CCCSSSSCCCCCCSCCC--SC--SSSCCCSCCCCCCSSCSCCS-S-----EEECSSCEEEHHHHHHTCSSSS--EETTTT
T ss_pred CCCcccCCCCCCCCCcc--ee--cCCccccCcccChhhccccC-C-----eeeecchhhHHHHHHHHHhhcc--CCcccC
Confidence 88888776543321111 11 12233337788999987543 2 3333489999999998877554 899999
Q ss_pred cccccc
Q 039031 81 KIEKGQ 86 (452)
Q Consensus 81 k~~k~N 86 (452)
+++...
T Consensus 69 ~pLPtk 74 (99)
T 2ko5_A 69 MPLPTK 74 (99)
T ss_dssp EECCCC
T ss_pred CcCCcc
Confidence 986543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.16 E-value=0.021 Score=46.76 Aligned_cols=34 Identities=21% Similarity=0.536 Sum_probs=27.1
Q ss_pred Ccccccccccc-ccccCCCccee--cccCCcchHhHHHHHHh
Q 039031 31 RTVSCSICLEL-VTDNGDRSWAK--LQCGHQFHLDCIGSAFN 69 (452)
Q Consensus 31 edl~CpICLe~-f~dP~~~~ivl--L~CGH~FC~~CI~swl~ 69 (452)
+++.|.||.+. +.++ +. +.|+|.||..|+..+..
T Consensus 2 ee~~C~~C~~~~~~~a-----v~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-----VKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC-----CEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc-----eEECCcCChHHhHHHCHHHhc
Confidence 46899999975 5555 44 99999999999997443
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.30 E-value=0.18 Score=41.63 Aligned_cols=46 Identities=30% Similarity=0.762 Sum_probs=34.9
Q ss_pred CccccccccccccccCCCcceeccc----CCcchHhHHHHHHhcC---CCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQC----GHQFHLDCIGSAFNSK---GAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~C----GH~FC~~CI~swl~sk---g~~~CPlCRk 81 (452)
..+.|.+|.+.+++- -..+| .|.||+.|-...++.+ ...-||.=.+
T Consensus 14 a~l~CtlC~erLEdt-----HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k 66 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-----HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66 (93)
T ss_dssp CSCCCSSSCSCCSST-----TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred CeeEeecchhhhccC-----ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence 568999999999887 45556 8999999999888753 3356775433
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.01 E-value=0.75 Score=47.12 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=38.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhH--HHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDC--IGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~C--I~swl~skg~~~CPlCRk~~k~ 85 (452)
-.+.|+|-+..+..| .....|.|.-|++- +..+........||+|.+.+..
T Consensus 248 vSL~CPlS~~ri~~P----vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 248 MSLQCPISYTRMKYP----SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EESBCTTTSSBCSSE----EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EeecCCCcccccccc----CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 468999999999888 46678999966665 3444444567999999998654
No 77
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.51 E-value=0.67 Score=52.68 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=46.8
Q ss_pred CccccccccccccccCCCcceecccC-CcchHhHHHHHHhcCCCCCCCCCcccccc-----chhhhhhhc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCG-HQFHLDCIGSAFNSKGAMQCPNCRKIEKG-----QWLYSNGCR 94 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CG-H~FC~~CI~swl~skg~~~CPlCRk~~k~-----N~~L~nlve 94 (452)
+.+.|+|-++.+.+| ++++.| ++|-+.+|.+|+... .+||.-|.+++. |..+...++
T Consensus 890 ~~F~cPIs~~lM~DP-----VilpsG~~TydR~~I~~wl~~~--~tdP~Tr~~L~~~~liPN~~Lk~~I~ 952 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP-----VILPASKMNIDRSTIKAHLLSD--STDPFNRMPLKLEDVTPNEELRQKIL 952 (968)
T ss_dssp GGGBCTTTCSBCSSE-----EECTTTCCEEEHHHHHHHHTTC--CBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred HHhCCcchhhHHhCC-----eEcCCCCEEECHHHHHHHHhcC--CCCCCCCCCCCcccccccHHHHHHHH
Confidence 679999999999999 999998 699999999999864 489999887653 555555443
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=84.14 E-value=1 Score=45.98 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=38.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhH--HHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDC--IGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~C--I~swl~skg~~~CPlCRk~~k~ 85 (452)
-.+.|+|-+..+..| .....|.|.-|++- +..+........||+|.+.+..
T Consensus 214 vSL~CPlS~~ri~~P----~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIP----CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EESBCTTTCSBCSSE----EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EeeeCCCccceeccC----CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 368899999999888 46678999966554 3333344567999999998653
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.22 E-value=0.83 Score=35.62 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=34.2
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk~ 82 (452)
....|.||.+. ..++.--.|...||..|+...+.. .+...|+.|+..
T Consensus 11 ~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35679999752 234456689999999999766554 355899999763
No 80
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.37 E-value=1.7 Score=36.11 Aligned_cols=48 Identities=23% Similarity=0.645 Sum_probs=29.2
Q ss_pred CccccccccccccccCCCcceecc--cC-CcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQ--CG-HQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~--CG-H~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
+...| ||..... . ..+..-. |. ..||..|+.---...+...||.|+..
T Consensus 35 e~~yC-iC~~~~~-g--~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G--EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S--CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C--CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 45678 9988643 2 1112223 54 58999999721111356899999774
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.42 E-value=4.9 Score=33.67 Aligned_cols=54 Identities=26% Similarity=0.470 Sum_probs=38.1
Q ss_pred Ccccccccccccc--ccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVT--DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~--dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
....|.||.+.+- ..++.-+..-.|+-..|..|+.--.+ .+...||.|+..++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 5578999999743 22233334557898999999975544 455799999997653
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.51 E-value=2.7 Score=33.30 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=32.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh---cCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN---SKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~---skg~~~CPlCRk~ 82 (452)
+.+.| ||.....+. ..-+.--.|...||..|+.-... ....+.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~-~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVN-HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSS-SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCC-CceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 45677 998876322 22233446888999999953221 1245899999874
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.38 E-value=0.51 Score=38.58 Aligned_cols=52 Identities=17% Similarity=0.540 Sum_probs=34.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh------cCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN------SKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~------skg~~~CPlCRk~ 82 (452)
.+..|.||...-..+...++..-.|...||..|+..-+. -.+...|+.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 457899999853322233445557899999999975432 2456889988663
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=63.92 E-value=1.3 Score=36.18 Aligned_cols=52 Identities=23% Similarity=0.541 Sum_probs=34.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
++..|.||...-....+..+..-.|.-.||..|+..-..-.+...|+.|...
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 5678999997532222233445578889999999753333456889999663
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=63.85 E-value=1.6 Score=33.99 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=34.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcC--CCCCCCCCcccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSK--GAMQCPNCRKIE 83 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~sk--g~~~CPlCRk~~ 83 (452)
+...|.||...... +..+.--.|.-.||..|+.--.... +...||.|+..+
T Consensus 17 ~~~~C~~C~~~~~~--~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 17 QIWICPGCNKPDDG--SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EEECBTTTTBCCSS--CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCcCCCCCCCCCCC--CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 35679999886432 2233445788999999996533322 458899997643
No 86
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.40 E-value=2.6 Score=33.03 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=30.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHh-------cCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN-------SKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~-------skg~~~CPlCRk~ 82 (452)
.+.| ||....... .-+.--.|...||..|+.-... ....+.||.|+..
T Consensus 16 ~~~C-~C~~~~~~~--~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNR--FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSS--CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCC--CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4677 898875422 2223346889999999942111 1345899999763
No 87
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.84 E-value=1.1 Score=33.93 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=32.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc---CCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS---KGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s---kg~~~CPlCRk 81 (452)
+...|+||...+.+. ..-+.--.|...||..|+.-.... ...+.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 357899999876432 222333478889999998542221 24588999976
No 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=58.29 E-value=1.6 Score=34.52 Aligned_cols=51 Identities=24% Similarity=0.563 Sum_probs=33.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk 81 (452)
++..|.||.+.-....+..+.--.|.-.||..|+..-..-.+...|+.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 457899998753222234445558888999999864322245678888865
No 89
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.40 E-value=1.2 Score=40.22 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=45.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc-----ccchhhhhhhccCCC
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE-----KGQWLYSNGCRSFPE 98 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~-----k~N~~L~nlve~~k~ 98 (452)
++..|.+|...|.--.....+...|.+.+|..|-. |........|-+|.+.- ...|.+..+...++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~rel~~kSGeWf~~~~~~rfk~ 138 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRARFKR 138 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHHHHHHHHCHHHHHHHHTTSSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHHHHHHhccHHHHHHHHhhhcc
Confidence 56799999998643223345888999999999973 44444557888887752 126666666665553
No 90
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.18 E-value=5 Score=31.51 Aligned_cols=45 Identities=24% Similarity=0.753 Sum_probs=28.7
Q ss_pred CccccccccccccccCCCcceecc-----cC-CcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQ-----CG-HQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~-----CG-H~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
+...| ||..... . .++. |. ..||..|+.---...+...||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-----~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-----SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-----CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 35678 8988532 2 2343 55 58999999721111356899999774
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=53.08 E-value=4.1 Score=33.73 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=31.7
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc-CCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS-KGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s-kg~~~CPlCRk~ 82 (452)
+.+.| ||.....+. ..+..-.|.-.||..|+..-... ...+.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~--~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG--YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSS--CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCC--cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34678 898764332 33445578899999998643221 135899999753
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.20 E-value=1.7 Score=35.81 Aligned_cols=51 Identities=20% Similarity=0.526 Sum_probs=33.8
Q ss_pred ccCccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 29 SFRTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 29 ~ledl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
..++..|.||...-. . +..+..-.|...||..|+..-+.. .+...||.|..
T Consensus 13 ~~~~~~C~vC~~~~~-~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDE-D-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGG-G-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCC-C-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 336778999998532 1 233455578889999999643322 34578999865
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=51.62 E-value=1.3 Score=33.77 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=34.5
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHh-----cCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN-----SKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~-----skg~~~CPlCRk~ 82 (452)
+..|.||..........++.--.|.-.||..|+..-+. ..+...|+.|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 56899999864333244455568899999999875321 2456789988653
No 94
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=50.38 E-value=8 Score=29.22 Aligned_cols=46 Identities=22% Similarity=0.632 Sum_probs=32.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.+..|.||... ...+.--.|.-.||..|+..-+.. .+...||.|.+
T Consensus 10 ~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC-----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 35689999873 223344578889999999864332 35689999976
No 95
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.38 E-value=12 Score=33.47 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=29.7
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHh---------cCCCCCCCCCccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN---------SKGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~---------skg~~~CPlCRk~ 82 (452)
..|.||.+- ..++..-.|--.||..||..-+. ..+...|+.|+..
T Consensus 64 d~C~vC~~G-----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 64 EQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CSCSSSCCC-----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CeecccCCC-----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345555542 12234447889999999986552 3466899999853
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.32 E-value=1.7 Score=32.35 Aligned_cols=46 Identities=28% Similarity=0.729 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.+..|.||.+. ..++.--.|...||..|+..-+.. ++...||.|.+
T Consensus 8 ~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS-----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC-----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 35679999873 223455578889999998753332 24467887754
No 97
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=46.95 E-value=4.2 Score=36.72 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=32.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk~~ 83 (452)
+..|.||... ..++..-.|.-.||..|+..-+.. .+...||.|+...
T Consensus 4 ~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC-----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC-----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3468899753 223455578889999998654432 3458899998753
No 98
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.55 E-value=7.8 Score=27.87 Aligned_cols=46 Identities=30% Similarity=0.729 Sum_probs=30.8
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.|.||...-. . +..+.--.|...||..|+..-+.. .+...||.|+.
T Consensus 2 ~C~vC~~~~~-~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-D-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-C-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-C-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888887422 1 234455688999999999653332 24578999975
No 99
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=45.97 E-value=5.4 Score=30.18 Aligned_cols=46 Identities=20% Similarity=0.574 Sum_probs=31.5
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk~ 82 (452)
+..|.||.+. ..++.--.|...||..|+..-+.. .+...||.|...
T Consensus 9 ~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG-----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC-----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4679999862 223445578889999999753332 345789999764
No 100
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=45.17 E-value=4.3 Score=37.53 Aligned_cols=52 Identities=19% Similarity=0.399 Sum_probs=34.1
Q ss_pred cccccccccccccCC--CcceecccCCcchHhHHHHH------Hh---cCCCCCCCCCccccc
Q 039031 33 VSCSICLELVTDNGD--RSWAKLQCGHQFHLDCIGSA------FN---SKGAMQCPNCRKIEK 84 (452)
Q Consensus 33 l~CpICLe~f~dP~~--~~ivlL~CGH~FC~~CI~sw------l~---skg~~~CPlCRk~~k 84 (452)
..|+||...+.+... .-+..-.|...||..|+.-- +. ....+.||.|+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999998765421 12344578999999998421 11 012489999988644
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=44.03 E-value=3.8 Score=36.51 Aligned_cols=49 Identities=20% Similarity=0.487 Sum_probs=32.2
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHH---hcCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAF---NSKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl---~skg~~~CPlCRk~ 82 (452)
...| ||.....+. ..-+..-.|.-.||..|+.-.. .....+.||.|+..
T Consensus 8 ~~~C-~C~~~~~~~-~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYC-ICKTPEDES-KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEET-TTTEECCTT-SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEe-eCCCCCCCC-CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 5789 998865322 2223445788899999995321 12356899999874
No 102
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=43.73 E-value=12 Score=41.62 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=40.7
Q ss_pred CccccccccccccccCCC-----cceecccCCcc--------------------hHhHHHHHHhcC------CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDR-----SWAKLQCGHQF--------------------HLDCIGSAFNSK------GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~-----~ivlL~CGH~F--------------------C~~CI~swl~sk------g~~~CPlC 79 (452)
+-..|+-|+..+.+|.++ =+-.+.||..| |.+|-.+|-.-. ....||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 678999999999999664 23456888887 999999987532 34689999
Q ss_pred cccc
Q 039031 80 RKIE 83 (452)
Q Consensus 80 Rk~~ 83 (452)
--.+
T Consensus 185 GP~l 188 (772)
T 4g9i_A 185 GPSY 188 (772)
T ss_dssp SCCE
T ss_pred CceE
Confidence 6653
No 103
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=43.08 E-value=33 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=23.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHH
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSA 67 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~sw 67 (452)
.+..|.||-..- .. .+.-..-|+-.||..|+.+.
T Consensus 14 ~D~~C~VC~~~t-~~--~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT-AE--SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC-SS--CCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc-cc--ceeccccccccccHhhcccc
Confidence 577899997532 11 12234568999999999986
No 104
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.50 E-value=12 Score=40.78 Aligned_cols=53 Identities=23% Similarity=0.527 Sum_probs=40.4
Q ss_pred CccccccccccccccCCC-----cceecccCCcc--------------------hHhHHHHHHhcC------CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDR-----SWAKLQCGHQF--------------------HLDCIGSAFNSK------GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~-----~ivlL~CGH~F--------------------C~~CI~swl~sk------g~~~CPlC 79 (452)
+...|.-|+..+.+|.++ =+-.+.||..| |.+|..+|-+-. ....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 678999999999998654 23456788887 999999987532 34789999
Q ss_pred cccc
Q 039031 80 RKIE 83 (452)
Q Consensus 80 Rk~~ 83 (452)
--.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 6554
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=42.09 E-value=11 Score=31.03 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=33.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.+..|.||.+. ..++..-.|.-.||..|+..-+.. .+...||.|..
T Consensus 24 n~~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 24 SATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCcCcCcCCC-----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 45689999973 233455678889999999665443 35688999976
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.09 E-value=28 Score=29.04 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=31.7
Q ss_pred cccccccccccc----ccCCCcceecccCCcchHhHHHH---HH--hcCCCCCCCCCcc
Q 039031 32 TVSCSICLELVT----DNGDRSWAKLQCGHQFHLDCIGS---AF--NSKGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~----dP~~~~ivlL~CGH~FC~~CI~s---wl--~skg~~~CPlCRk 81 (452)
...|.+|+..-. ...+.++.-..|+..||..||.. .. ...+...|+.|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 357889987421 11234556678999999999942 11 1244578888863
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.53 E-value=7.5 Score=32.64 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=30.2
Q ss_pred ccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 34 SCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.|.||...-.+. +.++.--.|...||..|+..-+.. .+...||.|+.
T Consensus 63 ~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCc-cceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577777642222 334455578899999998654433 34578999975
No 108
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=37.82 E-value=14 Score=41.04 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=39.6
Q ss_pred CccccccccccccccCCC-----cceecccCCcc--------------------hHhHHHHHHhcC------CCCCCCCC
Q 039031 31 RTVSCSICLELVTDNGDR-----SWAKLQCGHQF--------------------HLDCIGSAFNSK------GAMQCPNC 79 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~-----~ivlL~CGH~F--------------------C~~CI~swl~sk------g~~~CPlC 79 (452)
+...|.-|+..+.+|.++ =+-.+.||..| |.+|..+|-+-. ....||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 678999999999998654 23456788766 999999986531 34689999
Q ss_pred cccc
Q 039031 80 RKIE 83 (452)
Q Consensus 80 Rk~~ 83 (452)
--.+
T Consensus 190 GP~l 193 (761)
T 3vth_A 190 GPSL 193 (761)
T ss_dssp SCCE
T ss_pred CCee
Confidence 6543
No 109
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.40 E-value=4.3 Score=31.52 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=30.3
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh--cCCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN--SKGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~--skg~~~CPlCRk 81 (452)
+.+.| ||.....+. ..-+.--.|...||..|+.-... ....+.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g-~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDG-ERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCS-SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCC-CcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 35778 798864332 22233446888999999853211 124588999865
No 110
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.33 E-value=6.6 Score=36.22 Aligned_cols=45 Identities=29% Similarity=0.565 Sum_probs=29.9
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk~ 82 (452)
..|.||... ..++..-.|...||..|+..-+.. .+...||.|+..
T Consensus 8 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCC-----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCC-----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 468888753 123344568888999998654432 345889999874
No 111
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=37.18 E-value=61 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=26.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccccchhh
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKGQWLY 89 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~N~~L 89 (452)
..+.|.+|...|... ..|. .| .........+.|++|.+.+.....|
T Consensus 16 ~~~~C~~C~~~f~~~-----~~l~-~H-------~~~h~~~~~~~C~~C~~~f~~~~~l 61 (106)
T 2ee8_A 16 KEFICKFCGRHFTKS-----YNLL-IH-------ERTHTDERPYTCDICHKAFRRQDHL 61 (106)
T ss_dssp CCCBCSSSCCBCSSH-----HHHH-HH-------HHHHCCSCCCBCSSSCCBCSCHHHH
T ss_pred cCeECCCCCCccCCH-----HHHH-HH-------HHHcCCCCCcCCCCccchhCCHHHH
Confidence 458899999988654 1110 01 0111122447899998887654333
No 112
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.74 E-value=21 Score=29.75 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEKG 85 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k~ 85 (452)
+-+.|..|...|.+.+. .....=|..||..|....+..++ .|-.|.+.+..
T Consensus 31 ~CF~C~~C~~~L~~~~~--~~~~~~g~~yC~~cy~~~f~~~~--~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGT--SSYTKSGMILCRNDYIRLFGNSG--AGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEE--CCEEETTEEECHHHHHHHHCCCC--SSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCC--eEEEECCeeecHHHHHHHcCCCC--ccccCCCCcCc
Confidence 56889999998852100 14456678899999988776433 79999887664
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=36.17 E-value=7.9 Score=35.49 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=31.3
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk~ 82 (452)
..|.+|... +.++....|.-.||..|+..-+.. .+...||.|+..
T Consensus 3 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP-----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC-----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 468899853 223455678889999999654432 356789999764
No 114
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.04 E-value=24 Score=36.32 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=30.3
Q ss_pred ccccccccccccccCCCcceec--ccCCcchHhHHHHHHhc--------CCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL--QCGHQFHLDCIGSAFNS--------KGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL--~CGH~FC~~CI~swl~s--------kg~~~CPlCRk~ 82 (452)
+..|.||.+- ..++..- .|...||..||...+.. .....|=+|.-.
T Consensus 93 ~~yCr~C~~G-----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSG-----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCC-----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCC-----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3456666652 1223333 78899999999988732 245889999764
No 115
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.79 E-value=8.7 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCcceec--ccCCcchHhHHHHHHhc-------CCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL--QCGHQFHLDCIGSAFNS-------KGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL--~CGH~FC~~CI~swl~s-------kg~~~CPlCRk~ 82 (452)
+.+.| ||....... .-+.-- .|...||..|+.---.. ...+.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g--~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD--SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS--CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC--CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 35778 899873322 111222 68889999999532111 135889999763
No 116
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.82 E-value=17 Score=27.96 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=28.9
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCC
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNC 79 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlC 79 (452)
..|-.|+..+.+.+ ...-..|++.||.+|=.-..+ ..-.||-|
T Consensus 16 ~~C~~C~~~~~~~~--~y~C~~C~~~FC~dCD~fiHe--~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH--VYVCAVCQNVFCVDCDVFVHD--SLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE--EECCTTTTCCBCHHHHHTTTT--TSCSSSTT
T ss_pred CcccccCcccCCCc--cEECCccCcCcccchhHHHHh--hccCCcCC
Confidence 35889999886441 124678999999999542222 23489988
No 117
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.37 E-value=7.8 Score=26.79 Aligned_cols=15 Identities=13% Similarity=0.488 Sum_probs=12.6
Q ss_pred Ccccccccccccccc
Q 039031 31 RTVSCSICLELVTDN 45 (452)
Q Consensus 31 edl~CpICLe~f~dP 45 (452)
+.+.||||+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 358999999998876
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=31.25 E-value=5.5 Score=30.99 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=30.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh-cCCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN-SKGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~-skg~~~CPlCRk 81 (452)
+.+.| ||...... ..-+.--.|...||..|+.-... ....+.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~--~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG--RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT--CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCC--CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 46788 99886542 22233346888999999853221 124578888865
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.92 E-value=30 Score=30.37 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=30.6
Q ss_pred cccccccccccccCCCcceecccCCcchHhHHHHHH------h---cCCCCCCCCCccc
Q 039031 33 VSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAF------N---SKGAMQCPNCRKI 82 (452)
Q Consensus 33 l~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl------~---skg~~~CPlCRk~ 82 (452)
..|.||.+- ..++.--.|-..||..||...+ + ..+...|+.|+..
T Consensus 58 ~~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 58 EQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CcCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 468888763 1122334789999999998652 1 2456899999764
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=30.67 E-value=4.1 Score=31.43 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=26.8
Q ss_pred CccccccccccccccCCCcceec-----ccCCcchHhHHHHHHhcC------CCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKL-----QCGHQFHLDCIGSAFNSK------GAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL-----~CGH~FC~~CI~swl~sk------g~~~CPlCRk 81 (452)
+.+.| ||.....+. .++ .|.-.||..|+.-.-... ..+.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g-----~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVND-----SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCS-----CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCC-----CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34678 897654433 233 367799999984211100 2478999975
No 121
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.05 E-value=97 Score=24.30 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=27.8
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc---CCCCCCCCCccccccchhhh
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS---KGAMQCPNCRKIEKGQWLYS 90 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s---kg~~~CPlCRk~~k~N~~L~ 90 (452)
+...|.+|...|... .-+..-+.. ...+.|+.|.+.+.....|.
T Consensus 27 ~~h~C~~Cgk~F~~~----------------~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~ 73 (85)
T 2lv2_A 27 ECHLCPVCGESFASK----------------GAQERHLRLLHAAQVFPCKYCPATFYSSPGLT 73 (85)
T ss_dssp TTEECTTSCCEESSH----------------HHHHHHHHTTSCSSSEECTTSSCEESSHHHHH
T ss_pred CCEECCCCCCCcCcH----------------HHHhhhhhhccCCCccCCCCCCCEeCCHHHHH
Confidence 457899999988765 122222222 23478999999887644443
No 122
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=29.74 E-value=11 Score=27.51 Aligned_cols=46 Identities=22% Similarity=0.386 Sum_probs=27.2
Q ss_pred ccccccccccccCCCcceec-ccCCcchHhHHHHHHh--cCCCCCCCCCc
Q 039031 34 SCSICLELVTDNGDRSWAKL-QCGHQFHLDCIGSAFN--SKGAMQCPNCR 80 (452)
Q Consensus 34 ~CpICLe~f~dP~~~~ivlL-~CGH~FC~~CI~swl~--skg~~~CPlCR 80 (452)
.|.||...+.+. ..-+.-- .|.-.||..|+.-... ....+.||.|+
T Consensus 4 ~cc~C~~p~~~~-~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT-CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC-CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 577888876432 2212223 5777999999853211 12458999985
No 123
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.44 E-value=19 Score=31.54 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=33.4
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh--cCCCCCCCCCccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN--SKGAMQCPNCRKI 82 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~--skg~~~CPlCRk~ 82 (452)
++..|.+|...|.--.....+...|.|.+|..|-..... ......|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 457899999987311122347788999999999653211 1223677778764
No 124
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.34 E-value=17 Score=28.78 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=24.2
Q ss_pred ccccccccccccccCCCcceeccc-CCcchHhHHHHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQC-GHQFHLDCIGSAF 68 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~C-GH~FC~~CI~swl 68 (452)
..-|.||.+... +..+.| |-.||..|+.+..
T Consensus 8 ~pWC~ICneDAt------lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDAT------LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCCC------EEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCCe------EEecCCCCceehHHHHHHHc
Confidence 457999999632 367889 8899999988754
No 125
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.77 E-value=45 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=26.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCcccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIE 83 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~ 83 (452)
...|..|.+.+... ++..-+..||..|+ .|-.|++.+
T Consensus 15 ~~~C~~C~~~I~~~-----~~~a~~~~~H~~CF----------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-----FVKLRDRHRHPECY----------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCSS-----CEECSSCEECTTTT----------SCSSSCCCH
T ss_pred CCccccCCCCccCc-----EEEECcceeCcCcC----------eeCCCCCCC
Confidence 46899998877653 45556777777764 688887754
No 126
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.55 E-value=6.6 Score=29.94 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=24.2
Q ss_pred ccccccccccccccCCCccee-cc--cCCcchHhHHHHHHh
Q 039031 32 TVSCSICLELVTDNGDRSWAK-LQ--CGHQFHLDCIGSAFN 69 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivl-L~--CGH~FC~~CI~swl~ 69 (452)
...|+-|...++..+.-.-++ .. |++.||..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 357999988877553211122 23 888888888877654
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.44 E-value=26 Score=30.07 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=23.3
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
...|.+|...|.-- .+.-....||..||..|..
T Consensus 69 ~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccc-cccccCCCCCeEEChHHhC
Confidence 35799999987532 1222556899999999964
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=27.76 E-value=5.3 Score=30.25 Aligned_cols=43 Identities=26% Similarity=0.743 Sum_probs=27.0
Q ss_pred ccccccccccccccCCCcceec---c--cC-CcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL---Q--CG-HQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL---~--CG-H~FC~~CI~swl~skg~~~CPlCRk 81 (452)
...| ||..... . .++ . |. ..||..|+.---...+...||.|++
T Consensus 9 ~~yC-~C~~~~~-g-----~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-----EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-----EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-----CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 4677 8988632 2 334 3 55 5899999972111135688998865
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=27.45 E-value=29 Score=28.05 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=24.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGS 66 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~s 66 (452)
...|.+|...|.-- .+.-....||..||..|...
T Consensus 20 ~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccch-hhCccccCCCCEECCcccCC
Confidence 45799999877532 22225568999999999754
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.88 E-value=33 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=23.2
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
...|.+|...|.-- .+.--...||..||..|..
T Consensus 9 ~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCc-cccccCCCCCCEEChhHcC
Confidence 45899999987532 1112456899999999974
No 131
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=26.88 E-value=5.4 Score=30.21 Aligned_cols=41 Identities=27% Similarity=0.898 Sum_probs=26.7
Q ss_pred ccccccccccccccCCCcceecc-----cC-CcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQ-----CG-HQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~-----CG-H~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
...| ||..... . .++. |. ..||..|+. +.. .+...||.|++
T Consensus 10 ~~~C-~C~~~~~-g-----~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-----EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-----EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-----CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4677 8988532 2 3443 44 579999997 332 35688998865
No 132
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=26.52 E-value=5.6 Score=30.45 Aligned_cols=43 Identities=28% Similarity=0.835 Sum_probs=27.3
Q ss_pred ccccccccccccccCCCcceec---c--cC-CcchHhHHHHHHhcCCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL---Q--CG-HQFHLDCIGSAFNSKGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL---~--CG-H~FC~~CI~swl~skg~~~CPlCRk 81 (452)
...| ||.... .. .++ . |. ..||..|+.---...+...||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-----~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-----EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-----EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-----CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4677 898853 22 334 3 44 7899999972211135688999865
No 133
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.38 E-value=29 Score=33.23 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=29.4
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CC-CCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KG-AMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg-~~~CPlCRk 81 (452)
+..|.||...- +. +..+..-.|...||..|+..-+.. .+ ...||.|+.
T Consensus 174 ~c~C~vC~~~~-~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQ-DP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCC-C---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCC-CC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 34688888642 11 334455689999999999854443 24 578999975
No 134
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.03 E-value=7.7 Score=31.11 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=25.8
Q ss_pred ccccccccc-ccCCCcceecccCCcchHhHHHHHHhcCCCCCCC
Q 039031 35 CSICLELVT-DNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCP 77 (452)
Q Consensus 35 CpICLe~f~-dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CP 77 (452)
|+-|...+. ++....+....|++.||..|-..|-+.+...+|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~ 71 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE 71 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChH
Confidence 887777543 2222233444699999999988772323323554
No 135
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.95 E-value=16 Score=30.25 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=30.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCR 80 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCR 80 (452)
+..|.||.+.-.. +..+.-..|+..||..|+...+.. .+...||.|+
T Consensus 7 ~~~C~~C~~~g~~--~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 7 GANCAVCDSPGDL--LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CSCBTTTCCCCCT--TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCcCCCCCCCC--cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4689999875321 122345689999999999765432 2457788775
No 136
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=25.48 E-value=5.4 Score=30.54 Aligned_cols=46 Identities=22% Similarity=0.626 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
.+..|.||.+. ..++.--.|.-.||..|+..-+.. .+...||.|..
T Consensus 7 ~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC-----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 35689999863 223445578888999998743322 24577888855
No 137
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.29 E-value=47 Score=23.94 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=26.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHh---cCCCCCCCCCccccccchhh
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFN---SKGAMQCPNCRKIEKGQWLY 89 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~---skg~~~CPlCRk~~k~N~~L 89 (452)
..+.|.+|...|... . -|..-+. ....+.|++|.+.+.....|
T Consensus 13 k~~~C~~C~k~f~~~-----~-----------~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L 58 (72)
T 1x6e_A 13 KPYGCVECGKAFSRS-----S-----------ILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58 (72)
T ss_dssp CCEECSSSCCEESSH-----H-----------HHHHHHHGGGCSCCEECSSSCCEESSHHHH
T ss_pred CCccCCCCCCccCCH-----H-----------HHHHHHHhcCCCCCeECCCCCcccCCHHHH
Confidence 357899999887655 1 1111111 12347899999987664333
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=25.06 E-value=27 Score=32.35 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=24.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
++..|.+|...|.-- .+.--...||..||..|..
T Consensus 160 ~~~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSS-SCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCc-ccccccCCcCCEEChHHhC
Confidence 457899999887522 1222556899999998864
No 139
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.88 E-value=11 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=23.5
Q ss_pred ccccc--ccccccc-cCCCcceec-----ccCCcchHhHHHHHHh
Q 039031 33 VSCSI--CLELVTD-NGDRSWAKL-----QCGHQFHLDCIGSAFN 69 (452)
Q Consensus 33 l~CpI--CLe~f~d-P~~~~ivlL-----~CGH~FC~~CI~swl~ 69 (452)
.-||- |...+.. +....+.-. .|++.||..|...|..
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 45776 7765442 222333444 7999999999987743
No 140
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.65 E-value=35 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=23.8
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGS 66 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~s 66 (452)
...|.+|...|.-- .+.---..||..||..|...
T Consensus 21 ~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccc-hhcccccCCCcEEChHHhCC
Confidence 45799999987532 12224568999999999643
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=23.96 E-value=7.1 Score=29.22 Aligned_cols=45 Identities=29% Similarity=0.741 Sum_probs=27.6
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHHhc--CCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNS--KGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~s--kg~~~CPlCRk 81 (452)
+..|.||... ...+.--.|.-.||..|+..-+.. .+...||.|..
T Consensus 5 ~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC-----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4578888763 123344577888888888643322 24467887755
No 142
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=23.59 E-value=40 Score=26.07 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=22.9
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
+..|.+|...|.-- .+.---..||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLL-NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTT-BCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCc-cccccCCCCCEEEcccccC
Confidence 45899999987532 1122456899999999964
No 143
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.58 E-value=35 Score=27.01 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
...|.+|...|.-- .+.---..||..||..|..
T Consensus 19 ~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGC
T ss_pred CCcccCcCCcccCc-cccccCCCCCCEEChHHhC
Confidence 35799999987532 1122456899999999974
No 144
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.56 E-value=27 Score=31.23 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=35.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+-+.|..|...|...+. .....=|..||..|..+.+..+ ..|..|.+.+.
T Consensus 31 ~CF~C~~C~~~L~~~g~--~~~~~~g~~yC~~cy~~~~~~~--~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGT--SSYTKSGMILCRNDYIRLFGNS--GACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCS--EEEEETTEEECHHHHHHHHSCC--EECTTTCCEEC
T ss_pred cCcccCCCCcccccCCc--eEEEeCCccccccccccccccC--CccccCCCccc
Confidence 67899999988764100 1445567899999998766532 16999988654
No 145
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=23.19 E-value=29 Score=29.53 Aligned_cols=13 Identities=15% Similarity=0.572 Sum_probs=11.5
Q ss_pred cchHhHHHHHHhc
Q 039031 58 QFHLDCIGSAFNS 70 (452)
Q Consensus 58 ~FC~~CI~swl~s 70 (452)
-||+.|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 146
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=22.85 E-value=30 Score=29.42 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=11.5
Q ss_pred cchHhHHHHHHhc
Q 039031 58 QFHLDCIGSAFNS 70 (452)
Q Consensus 58 ~FC~~CI~swl~s 70 (452)
.||+.|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 147
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.01 E-value=19 Score=35.92 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHHHHHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAF 68 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl 68 (452)
...|.+|...|.-- .+.-....||..||..|-....
T Consensus 375 ~~~c~~c~~~f~~~-~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLT-LRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred CCcCCCcCCCCCCc-chhhhcccCcCEeehhhCCCee
Confidence 45799999877522 1122567899999999986543
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.90 E-value=34 Score=31.99 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=24.0
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHH
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIG 65 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~ 65 (452)
++..|.+|...|.-- .+.-....||..||..|-.
T Consensus 163 ~~~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVM-TRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTT-BCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCcc-ccccccCCCcCEeChhhcC
Confidence 456899999877522 1222556899999999964
No 149
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.84 E-value=12 Score=29.27 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=26.3
Q ss_pred ccccccccccccccCCCcceeccc---CCcchHhHHHHHHhcCCCCCCCCCccc
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQC---GHQFHLDCIGSAFNSKGAMQCPNCRKI 82 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~C---GH~FC~~CI~swl~skg~~~CPlCRk~ 82 (452)
.+.| ||.... .. ..+.--.| ...||..|+.---...+...||.|+..
T Consensus 6 ~~yC-~C~~~~-~g--~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG--EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCS-TTSCCC-CS--SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CeEE-EcCCCC-CC--CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 4566 587753 22 11122233 268999999632112345889999764
No 150
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=21.63 E-value=9.8 Score=31.43 Aligned_cols=47 Identities=26% Similarity=0.526 Sum_probs=27.5
Q ss_pred CccccccccccccccCCCcceecccC---CcchHhHHHHHHhcCCCCCCCC-Ccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCG---HQFHLDCIGSAFNSKGAMQCPN-CRK 81 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CG---H~FC~~CI~swl~skg~~~CPl-CRk 81 (452)
+.+.| ||....... .+..-.|. -.||..|+.--....+...||. |++
T Consensus 25 ~~~yC-iC~~~~~g~---MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYGP---MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSSS---EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCCC---EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 35678 998753221 12222433 6899999962111135689999 865
No 151
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.39 E-value=61 Score=24.81 Aligned_cols=39 Identities=21% Similarity=0.508 Sum_probs=26.1
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|..|.+.+.+. .+..-+..||..| +.|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~-----~v~a~~~~~H~~C----------F~C~~C~~~L~ 52 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-----PLIFKNDPYHPDH----------FNCANCGKELT 52 (79)
T ss_dssp CCCBCTTTCCBCCSC-----CCCCSSSCCCTTT----------SBCSSSCCBCC
T ss_pred CCCCCccCCCEecce-----EEEECcceeCCCC----------CEeCCCCCccC
Confidence 456788888877643 4445566777666 37888877654
No 152
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=21.15 E-value=20 Score=30.14 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=29.0
Q ss_pred cccccccccc-c----cCCCcceecccCCcchHhHHHHHH-----hcCCCCCCCCCc
Q 039031 34 SCSICLELVT-D----NGDRSWAKLQCGHQFHLDCIGSAF-----NSKGAMQCPNCR 80 (452)
Q Consensus 34 ~CpICLe~f~-d----P~~~~ivlL~CGH~FC~~CI~swl-----~skg~~~CPlCR 80 (452)
.|.||+..-. + ..+.++.-..|+..||..|+.... ...+...|+.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 5888887531 1 113445556889999999986431 123457788774
No 153
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.05 E-value=41 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=21.9
Q ss_pred ccccccccccccccCCCcceecccCCcchHhHH
Q 039031 32 TVSCSICLELVTDNGDRSWAKLQCGHQFHLDCI 64 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI 64 (452)
...|.+|...|..- .+.---..||..||..|.
T Consensus 14 ~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 14 FGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CSSCSSSCCCCCSS-SCCEECSSSCCEECTTTS
T ss_pred CCcCcCcCCccccc-hhhhhhcCCCcEEChhhc
Confidence 35799999987422 111245689999999885
No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.46 E-value=59 Score=29.58 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=28.7
Q ss_pred ccccccccccccccCCCcceec--ccCCcchHhHHHHHHhc--------CCCCCCCCCcc
Q 039031 32 TVSCSICLELVTDNGDRSWAKL--QCGHQFHLDCIGSAFNS--------KGAMQCPNCRK 81 (452)
Q Consensus 32 dl~CpICLe~f~dP~~~~ivlL--~CGH~FC~~CI~swl~s--------kg~~~CPlCRk 81 (452)
+..|.||.+- ..++.-- .|-..||..||...+.. .....|=+|.-
T Consensus 79 ~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3467777652 1111222 58889999999887653 23477888865
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.39 E-value=77 Score=24.40 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=26.6
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
....|..|.+.+... + .+..-+..||..| +.|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~-e---~v~a~~~~wH~~C----------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVL-E---RLCVNGHFFHRSC----------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTT-T---BCCBTTBCCBTTT----------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccc-e---EEEECCCeeCCCc----------CEEcCCCCCcC
Confidence 457899999987543 2 2334566777766 37888877643
No 156
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.08 E-value=83 Score=27.45 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=33.9
Q ss_pred CccccccccccccccCCCcceecccCCcchHhHHHHHHhcCCCCCCCCCccccc
Q 039031 31 RTVSCSICLELVTDNGDRSWAKLQCGHQFHLDCIGSAFNSKGAMQCPNCRKIEK 84 (452)
Q Consensus 31 edl~CpICLe~f~dP~~~~ivlL~CGH~FC~~CI~swl~skg~~~CPlCRk~~k 84 (452)
+-+.|..|...|... ....=|..||..|....+. ..|..|.+.+.
T Consensus 32 ~CF~C~~C~~~L~~~-----~f~~~g~~yC~~~y~~~f~----~~C~~C~~~I~ 76 (169)
T 2rgt_A 32 KCLKCSDCHVPLAER-----CFSRGESVYCKDDFFKRFG----TKCAACQLGIP 76 (169)
T ss_dssp TTSBCTTTCCBCCSC-----CEESSSCEECHHHHHHHHS----CBCTTTCCBCC
T ss_pred ccCccCCCCCcCCCC-----CcccCCeeeeccccccccc----ccccccccccC
Confidence 678999999988654 2245588999999987654 37999988654
Done!