BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039035
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 12/213 (5%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK-RT 97
LN I G A++GPSG+GKSTLL +AG S GK+ D K+ + K R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVTELPPKDRN 76
Query: 98 SAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDX 157
+ Q L+P +TV++ + F + R P DKK R + L + N +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR--EVAKMLHIDKLLNRY---- 130
Query: 158 XXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVIL 216
I ++ P +L LDEP S LD+ V ++ + + G T +
Sbjct: 131 -PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 217 TIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
H + + + D + ++ G+++ G P EV
Sbjct: 190 VTHDQAEALA-MADRIAVIREGEILQVGTPDEV 221
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 124/252 (49%), Gaps = 28/252 (11%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS---LIK 95
L I + +G +TA++G +G GKSTL G + S G++ D K S ++K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS--GRILFDNKPIDYSRKGIMK 81
Query: 96 -RTSAYIMQED---RLFPMLTVFETLMFAA-DFRLGPISWSDKKQRVENLVDQLGLTTTR 150
R S I+ +D +LF +V++ + F A + +L + ++RV+N + + G+
Sbjct: 82 LRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIE--- 134
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210
H+ D I ++ P +L LDEPT+GLD +++ + + +
Sbjct: 135 --HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 211 -GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH---VNRLGRKVPKGENS 266
G T+I+ H + L D++ ++ G+++ QG PKEV + ++ ++P+
Sbjct: 193 LGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPR---- 247
Query: 267 IEYLIDVIQEYD 278
I +L+++++E D
Sbjct: 248 IGHLMEILKEKD 259
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 13/212 (6%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-TSPSLIKRT 97
L+ ++ G ++GP+GAGK+ L+ +AG S G++ LDGK+ T S K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVTDLSPEKHD 73
Query: 98 SAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDX 157
A++ Q LFP + V + L F R+ I D K+ ++ D + H+ D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIK--DPKRVLDTARD------LKIEHLLDR 123
Query: 158 XXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILT 217
+ ++ P +L LDEP S LD + + E + + + +L
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 218 IHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I + +++ D + ++ G+L+ G P+E+
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 27/261 (10%)
Query: 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLD 67
F G L F N+ + + EV + + P G +TA++GPSG+GKST+L
Sbjct: 338 FQGALEFKNVHFAYPARP---------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLS 388
Query: 68 GLAGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR 124
L S G ++LDG ++ +P ++ + QE LF ++ E + + AD
Sbjct: 389 LLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD-- 443
Query: 125 LGPISWSDKK-QRVENLVDQLGLTTT----RNTHIGDXXXXXXXXXXXXXXXIGVDIIHG 179
P S + ++ QRV + + + NT +G+ I ++
Sbjct: 444 -DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKN 501
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239
P +L LDE TS LD+ + Y V E + + G TV++ H+ S+ + + +L +G+
Sbjct: 502 PKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLSTIKN--ANMVAVLDQGK 558
Query: 240 LMFQGPPKEVTLHVNRLGRKV 260
+ G +E+ N + RK+
Sbjct: 559 ITEYGKHEELLSKPNGIYRKL 579
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 27/261 (10%)
Query: 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLD 67
F G L F N+ + + EV + + P G +TA++GPSG+GKST+L
Sbjct: 369 FQGALEFKNVHFAYPARP---------EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLS 419
Query: 68 GLAGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR 124
L S G ++LDG ++ +P ++ + QE LF ++ E + + AD
Sbjct: 420 LLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD-- 474
Query: 125 LGPISWSDKK-QRVENLVDQLGLTTT----RNTHIGDXXXXXXXXXXXXXXXIGVDIIHG 179
P S + ++ QRV + + + NT +G+ I ++
Sbjct: 475 -DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKN 532
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239
P +L LDE TS LD+ + Y V E + + G TV++ H S+ + + +L +G+
Sbjct: 533 PKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHHLSTIKN--ANMVAVLDQGK 589
Query: 240 LMFQGPPKEVTLHVNRLGRKV 260
+ G +E+ N + RK+
Sbjct: 590 ITEYGKHEELLSKPNGIYRKL 610
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 15/223 (6%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---- 91
+ LN ++ P G I V+G SGAGKSTL+ + + +G V +DG+E +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSES 75
Query: 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT 149
+ +R I Q L TVF + + P + K+RV L+ +GL
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP--KDEVKRRVTELLSLVGLGDK 133
Query: 150 RNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209
+++ + I + P +L DE TS LD + S++E + +I R
Sbjct: 134 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 210 SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252
IL I ++ + D + +++ G+L+ Q EV H
Sbjct: 189 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 15/223 (6%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---- 91
+ LN ++ P G I V+G SGAGKSTL+ + + +G V +DG+E +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSES 98
Query: 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT 149
+ +R I Q L TVF + + P + K+RV L+ +GL
Sbjct: 99 ELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTP--KDEVKRRVTELLSLVGLGDK 156
Query: 150 RNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209
+++ + I + P +L D+ TS LD + S++E + +I R
Sbjct: 157 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 210 SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252
IL I ++ + D + +++ G+L+ Q EV H
Sbjct: 212 RLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 15/223 (6%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---- 91
+ LN ++ P G I V+G SGAGKSTL+ + + +G V +DG+E +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSES 98
Query: 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT 149
+ +R I Q L TVF + + P + K+RV L+ +GL
Sbjct: 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP--KDEVKRRVTELLSLVGLGDK 156
Query: 150 RNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209
+++ + I + P +L D+ TS LD + S++E + +I R
Sbjct: 157 HDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 210 SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252
IL I ++ + D + +++ G+L+ Q EV H
Sbjct: 212 RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 22/194 (11%)
Query: 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS---- 92
++L I+ KG +++G SG+GKSTLL L + +GKV L+GKE +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 93 ---LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT 149
L R ++ Q L P LT E ++ ++G + K+R E L+ +LGL
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGK-PKKEAKERGEYLLSELGL--- 130
Query: 150 RNTHIGDXXXXX---XXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN 206
GD I + + P LLF DEPT LDS + V++
Sbjct: 131 -----GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 207 IARSGSTVILTIHQ 220
I G+++++ H+
Sbjct: 186 INEGGTSIVMVTHE 199
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASGSL-KGKVTLDGKETSP 91
EV + I D +G +GPSG GKSTLL +AG I SG L G+ ++ +T P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151
+ +R + Q L+P L+V E + F +L QRV + + L L
Sbjct: 73 A--ERGVGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLA---- 124
Query: 152 THIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSV---IEKVHNIA 208
H+ D IG ++ P + LDEP S LD+ + I ++H
Sbjct: 125 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-- 181
Query: 209 RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
R G T+I H + L D +++L G++ G P E+
Sbjct: 182 RLGRTMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASGSL-KGKVTLDGKETSP 91
EV + I D +G +GPSG GKSTLL +AG I SG L G+ ++ +T P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151
+ +R + Q L+P L+V E + F +L QRV + + L L
Sbjct: 73 A--ERGVGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLA---- 124
Query: 152 THIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSV---IEKVHNIA 208
H+ D IG ++ P + LDEP S LD+ + I ++H
Sbjct: 125 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-- 181
Query: 209 RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
R G T+I H + L D +++L G++ G P E+
Sbjct: 182 RLGRTMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLEL 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 27/286 (9%)
Query: 25 KKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSL---K 79
K + + K +V L+ + + G ++GPSGAGK+T + +AG ++G L
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 80 GKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVEN 139
V +GK P R + Q L+P LT FE + F +S + ++RVE
Sbjct: 67 RLVASNGKLIVPPE-DRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVEE 123
Query: 140 LVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDS---TS 196
+ L + H+ + + ++ P LL LDEP S LD+ S
Sbjct: 124 VAKILDIH-----HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 197 AYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE-----VTL 251
A +++++V +R G T+++ H P+ I + D + +L +G+L+ G P++ V++
Sbjct: 179 ARALVKEVQ--SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
Query: 252 HVNRLGRKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRP 297
V L ++ + E + VI F V V ++ A G+RP
Sbjct: 236 QVASLIGEINELEGKVTNEGVVIGSL---RFPVSVSSDRAIIGIRP 278
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---PSLIKRTSAYIMQ 103
P+G I ++G +GAGK+T L +AG + + KGK+ +G++ + +I R ++
Sbjct: 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDITNKPAHVINRXGIALVP 87
Query: 104 EDR-LFPMLTVFETLMFAADFRLGPISWSDKKQ-------------RVENLVDQLGLTTT 149
E R +FP LTV+E L A R DK+ R++ + QLG T +
Sbjct: 88 EGRRIFPELTVYENLXXGAYNR------KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 150 RNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209
IG + P LL DEP+ GL V E + I +
Sbjct: 142 GGEQ--------------QXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 210 SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
G+T++L + Q + + + +L GQ++ +G E+
Sbjct: 188 EGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 11/214 (5%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---SP 91
E+++L ++ G A++GPSG GKST++ L R +L G++ +DG E +P
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYD-TLGGEIFIDGSEIKTLNP 1148
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-LTTTR 150
+ A + QE LF ++ E +++ D ++ ++ R+ N+ + + L
Sbjct: 1149 EHTRSQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGF 1207
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210
T +GD I ++ P +L LDE TS LD T + V+++ + AR
Sbjct: 1208 ETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALDRARE 1265
Query: 211 GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244
G T I+ H+ ++ + D + +++ G ++ +G
Sbjct: 1266 GRTCIVIAHRLNTVMN--ADCIAVVSNGTIIEKG 1297
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQED 105
G A++G SG GKST++ L LKGK+T+DG ++ + +++ A + QE
Sbjct: 444 GQTVALVGSSGCGKSTIISLLLRYY--DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501
Query: 106 RLFPMLTVFETLMFAAD-FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXX 164
LF T+ E + + + + K E + L NT +GD
Sbjct: 502 ALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTLVGDRGTQLSGG 558
Query: 165 XXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
I ++ P +L LDE TS LD+ S ++++ + A G T I+ H+ S+
Sbjct: 559 QKQRIA-IARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKGRTTIIIAHRLST 615
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 130/286 (45%), Gaps = 27/286 (9%)
Query: 25 KKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSL---K 79
K + + K +V L+ + + G ++GPSGAGK+T + +AG ++G L
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 80 GKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVEN 139
V +GK P R + Q L+P LT FE + F +S + ++RVE
Sbjct: 67 RLVASNGKLIVPPE-DRKIGMVFQTWALYPNLTAFENIAFP--LTNMKMSKEEIRKRVEE 123
Query: 140 LVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDS---TS 196
+ L + H+ + + ++ P LL LDEP S LD+ S
Sbjct: 124 VAKILDIH-----HVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 197 AYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE-----VTL 251
A +++++V +R G T+++ H P+ I + D + +L +G+L+ G P++ V++
Sbjct: 179 ARALVKEVQ--SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
Query: 252 HVNRLGRKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRP 297
V L ++ + E + VI F V V ++ A G+RP
Sbjct: 236 QVASLIGEINELEGKVTNEGVVIGSL---RFPVSVSSDRAIIGIRP 278
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASGSL-KGKVTLDGKETSP 91
EV + I D +G +GPSG GKSTLL +AG I SG L G+ ++ +T P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPP 72
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151
+ +R + Q L+P L+V E + F +L QRV + + L L
Sbjct: 73 A--ERGVGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLA---- 124
Query: 152 THIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSV---IEKVHNIA 208
H+ D IG ++ P + LD+P S LD+ + I ++H
Sbjct: 125 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK-- 181
Query: 209 RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
R G T+I H + L D +++L G++ G P E+
Sbjct: 182 RLGRTMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLEL 221
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 18/218 (8%)
Query: 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLK---GKVTLDGKET--SP 91
++L I+ + +G I ++GP+GAGK+T L RI S +K G VT+ GK P
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTL-----RIISTLIKPSSGIVTVFGKNVVEEP 83
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151
+++ +Y+ +E + + E L F A F ++ +E +V++
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF------YASSSSEIEEMVERATEIAGLG 137
Query: 152 THIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSG 211
I D I ++ P L LDEPTSGLD +A V + + ++ G
Sbjct: 138 EKIKDRVSTYSKGMVRKLL-IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 212 STVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
T++++ H ++ L D + ++ G ++ G +E+
Sbjct: 197 LTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 22/225 (9%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---- 90
EV + +++ + G ++GPSG GK+T L +AG +G++ + K +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIYIGDKLVADPEK 72
Query: 91 -----PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG 145
P R A + Q L+P +TV++ + F R P D QRV + + LG
Sbjct: 73 GIFVPPK--DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID--QRVREVAELLG 128
Query: 146 LTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH 205
LT N +G I+ P + +DEP S LD+ + ++
Sbjct: 129 LTELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK 183
Query: 206 NIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
+ R G T I H + + D + ++ RG L G P EV
Sbjct: 184 KLQRQLGVTTIYVTHDQVEAMT-MGDRIAVMNRGVLQQVGSPDEV 227
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG-----KETS 90
+++L I +G + V+GPSG+GKST L L + +G++ +DG K+T+
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 73
Query: 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVE--NLVDQLGLTT 148
+ ++ + Q LFP +TV + A + W +K + L+D++GL
Sbjct: 74 LNKVREEVGMVFQRFNLFPHMTVLNNITLAP---MKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 149 TRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA 208
+ + D + ++ P ++ DEPTS LD V+ + +A
Sbjct: 131 KAHAY-PDSLSGGQAQRVAIARALAME----PKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 209 RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
G T+++ H+ + + D ++ + G ++ +G P+++
Sbjct: 186 NEGMTMVVVTHEMGFARE-VGDRVLFMDGGYIIEEGKPEDL 225
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG-----KETS 90
+++L I +G + V+GPSG+GKST L L + +G++ +DG K+T+
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTN 94
Query: 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVE--NLVDQLGLTT 148
+ ++ + Q LFP +TV + A + W +K + L+D++GL
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAP---MKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 149 TRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA 208
+ + D + ++ P ++ DEPTS LD V+ + +A
Sbjct: 152 KAHAY-PDSLSGGQAQRVAIARALAME----PKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 209 RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
G T+++ H+ + + D ++ + G ++ +G P+++
Sbjct: 207 NEGMTMVVVTHEMGFARE-VGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 14/217 (6%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASG--SLKGKVTLDGKETSPSL 93
+LN I+ G I ++G SG GK+TLL LAG + SG SL GK T+ K T+ +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK-TIFSKNTNLPV 77
Query: 94 IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH 153
+R Y++QE LFP LTV+ + + G + ++QR+E +++ G++
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGIS-----E 130
Query: 154 IGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GS 212
+ + + P L+ LDEP S LD + E + R+ G
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190
Query: 213 TVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
+ + H +Q D + ++ +G+++ P E+
Sbjct: 191 SAVFVSHDREEALQ-YADRIAVMKQGRILQTASPHEL 226
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Query: 50 CITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTS-AYIMQEDRLF 108
C+ ++GP+GAGKS L+ +AG + +G+V L+G + +P +R ++ Q+ LF
Sbjct: 27 CV--LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALF 82
Query: 109 PMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXX 168
P L+V+ + + L + ++ +RV + ++LG+ H+ D
Sbjct: 83 PHLSVYRNIAYG----LRNVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQ 133
Query: 169 XXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL 228
+ ++ P LL LDEP S +D + ++E++ + R IL + +L
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 229 LDHLIILARGQLMFQGPPKEV 249
D + ++ G+++ +G KE+
Sbjct: 194 ADEVAVMLNGRIVEKGKLKEL 214
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 17/214 (7%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRT 97
+L + + G I V+G +G+GK+TLL LAG +A+ G++ LDG P L+++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 98 SAYIMQE-DRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGD 156
Y+ Q TV E + F+ + + S+ ++R++ +++ +GL+ +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLSG-----LAA 135
Query: 157 XXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVIL 216
I + L LDEP S LD S + + + ++ G +IL
Sbjct: 136 ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIIL 195
Query: 217 TIHQPSSRIQLL--LDHLIILARGQLMFQGPPKE 248
H+ ++ L +D ++ ++ G + F G +E
Sbjct: 196 VTHE----LEYLDDMDFILHISNGTIDFCGSWEE 225
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 136 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ H+ S+ D +I++ +G+++ QG KE+
Sbjct: 194 IIIAHRLSTVKN--ADRIIVMEKGKIVEQGKHKEL 226
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 134 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ H+ S+ D +I++ +G+++ QG KE+
Sbjct: 192 IIIAHRLSTVKN--ADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 140 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ H+ S+ D +I++ +G+++ QG KE+
Sbjct: 198 IIIAHRLSTVKN--ADRIIVMEKGKIVEQGKHKEL 230
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 22/251 (8%)
Query: 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKS 63
KP G + FS + + + I +L ++ + KG A++G SG GKS
Sbjct: 1023 KPNMLEGNVQFSGVVFNYPTRPSIP---------VLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 64 TLLDGLAGRIASGSLKGKVTLDGKETSPSLIK--RTSAYIMQEDRLFPMLTVFETLMFAA 121
T++ L R + G V LDGKE ++ R I+ ++ + ++ E + +
Sbjct: 1074 TVVQ-LLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 122 DFRL---GPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIH 178
+ R+ I + K+ + +D L NT +GD I ++
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDS--LPDKYNTRVGD-KGTQLSGGQKQRIAIARALVR 1188
Query: 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238
P +L LDE TS LD T + V+++ + AR G T I+ H+ S+ IQ D ++++ G
Sbjct: 1189 QPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST-IQ-NADLIVVIQNG 1245
Query: 239 QLMFQGPPKEV 249
++ G +++
Sbjct: 1246 KVKEHGTHQQL 1256
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKS 63
KP + G L F N+ ++ +K EV +L + G A++G SG GKS
Sbjct: 380 KPDNIQGNLEFKNIHFSYPSRK---------EVQILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 64 TLLDGLAGRIASGSLKGKVTLDGKET---SPSLIKRTSAYIMQEDRLFPMLTVFETLMFA 120
T + L R+ L G V++DG++ + ++ + QE LF T+ E + +
Sbjct: 431 TTVQ-LMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG 487
Query: 121 -ADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHG 179
D + I + K+ + + + L +T +G+ I ++
Sbjct: 488 REDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQRIA-IARALVRN 544
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
P +L LDE TS LD T + +V++ + AR G T I+ H+ S+
Sbjct: 545 PKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLST 587
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 22/251 (8%)
Query: 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKS 63
KP G + FS + + + I +L ++ + KG A++G SG GKS
Sbjct: 1023 KPNMLEGNVQFSGVVFNYPTRPSIP---------VLQGLSLEVKKGQTLALVGSSGCGKS 1073
Query: 64 TLLDGLAGRIASGSLKGKVTLDGKETSPSLIK--RTSAYIMQEDRLFPMLTVFETLMFAA 121
T++ L R + G V LDGKE ++ R I+ ++ + ++ E + +
Sbjct: 1074 TVVQ-LLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 122 DFRL---GPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIH 178
+ R+ I + K+ + +D L NT +GD I ++
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDS--LPDKYNTRVGD-KGTQLSGGQKQRIAIARALVR 1188
Query: 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238
P +L LDE TS LD T + V+++ + AR G T I+ H+ S+ IQ D ++++ G
Sbjct: 1189 QPHILLLDEATSALD-TESEKVVQEALDKAREGRTCIVIAHRLST-IQ-NADLIVVIQNG 1245
Query: 239 QLMFQGPPKEV 249
++ G +++
Sbjct: 1246 KVKEHGTHQQL 1256
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 20/224 (8%)
Query: 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKS 63
KP + G L F N+ ++ +K EV +L + G A++G SG GKS
Sbjct: 380 KPDNIQGNLEFKNIHFSYPSRK---------EVQILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 64 TLLDGLAGRIASGSLKGKVTLDGKET---SPSLIKRTSAYIMQEDRLFPMLTVFETLMFA 120
T + L R+ L G V++DG++ + ++ + QE LF T+ E + +
Sbjct: 431 TTVQ-LMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYG 487
Query: 121 -ADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHG 179
D + I + K+ + + + L +T +G+ I ++
Sbjct: 488 REDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQRIA-IARALVRN 544
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
P +L LDE TS LD T + +V++ + AR G T I+ H+ S+
Sbjct: 545 PKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLST 587
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 17/239 (7%)
Query: 20 TVTKKKKIEGTWLKEEVD---LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG 76
VT +E + L V L+N ++ G + A++GP+GAGKSTLL L G ++
Sbjct: 5 AVTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS 64
Query: 77 SLKGKVTLDGKETS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDK 133
G+ L G+ + P + RT A + Q L +V E + P S
Sbjct: 65 --HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR----APYGGSQD 118
Query: 134 KQRVENLV---DQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTS 190
+Q ++ ++ D L L R+ + + P LFLDEPTS
Sbjct: 119 RQALQQVMAQTDCLALAQ-RDYRVLSGGEQQRVQLARVLAQLW-QPQPTPRWLFLDEPTS 176
Query: 191 GLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
LD + + + R + + + L D +++LA+G+L+ G P+EV
Sbjct: 177 ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G +G+GKSTL L R G+V +DG + P+ +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 136 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ H+ S+ D +I++ +G+++ QG KE+
Sbjct: 194 IIIAHRLSTVKN--ADRIIVMEKGKIVEQGKHKEL 226
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + + L NT +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIV 139
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L D+ TS LD S + ++ +H I + G TV
Sbjct: 140 GE-QGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ H+ S+ D +I++ +G+++ QG KE+
Sbjct: 198 IIIAHRLSTVKN--ADRIIVMEKGKIVEQGKHKEL 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 21/229 (9%)
Query: 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQ--ED 105
+G V G +G+GKSTLL +AG I S G V DG+ I+R Q ED
Sbjct: 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPED 89
Query: 106 RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXX 165
+ F VF+ + FA D V+ ++ +GL D
Sbjct: 90 QFFAE-RVFDEVAFAVK---NFYPDRDPVPLVKKAMEFVGLDFD---SFKDRVPFFLSGG 142
Query: 166 XXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRI 225
I I+H P +L LDEP GLD ++ V G TVIL H + I
Sbjct: 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 202
Query: 226 QLLLDHLIILARGQLMFQG---------PPKEVTLHVNRLGRKVPKGEN 265
+D +++L +G+ +F G P+ T + + R V KGE+
Sbjct: 203 N-HVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGED 250
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 21/229 (9%)
Query: 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQ--ED 105
+G V G +G+GKSTLL +AG I S G V DG+ I+R Q ED
Sbjct: 34 EGECLLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPED 91
Query: 106 RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXX 165
+ F VF+ + FA D V+ ++ +GL D
Sbjct: 92 QFFAE-RVFDEVAFAVK---NFYPDRDPVPLVKKAMEFVGLDFD---SFKDRVPFFLSGG 144
Query: 166 XXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRI 225
I I+H P +L LDEP GLD ++ V G TVIL H + I
Sbjct: 145 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVI 204
Query: 226 QLLLDHLIILARGQLMFQG---------PPKEVTLHVNRLGRKVPKGEN 265
+D +++L +G+ +F G P+ T + + R V KGE+
Sbjct: 205 N-HVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGED 252
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 22/211 (10%)
Query: 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD---------GKETSPSLIKRTSA 99
G ++GPSG GK+T L +AG +G++ ++ G P +R A
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAG--LEEPTRGQIYIEDNLVADPEKGVFVPPK--ERDVA 87
Query: 100 YIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXX 159
+ Q L+P TV++ + F R P DK RV + + LGLT N
Sbjct: 88 XVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDK--RVREVAEXLGLTELLNRK-----P 140
Query: 160 XXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTI 218
+G II P + DEP S LD+ ++ + R G T I
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVT 200
Query: 219 HQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
H D + + +G+L G P EV
Sbjct: 201 HD-QVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---- 90
E L+ ++ KG +T ++GP+G+GKSTL++ + G + + +G+V + K+ +
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFA----ADFRLGPISWSDKKQRVENLVDQLG- 145
L Q + +TV E L+ + L + + + E +V++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 146 -LTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV 204
L + +H+ D IG ++ P ++ +DEP +G+ A+ + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 205 HNIARSGSTVILTIHQPSSRIQLLL---DHLIILARGQLMFQGPPKE 248
+ G T ++ H R+ ++L DHL ++ GQ++ +G +E
Sbjct: 197 LELKAKGITFLIIEH----RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---- 90
E L+ ++ KG +T ++GP+G+GKSTL++ + G + + +G+V + K+ +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFA----ADFRLGPISWSDKKQRVENLVDQLG- 145
L Q + +TV E L+ + L + + + E +V++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 146 -LTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV 204
L + +H+ D IG ++ P ++ +DEP +G+ A+ + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHV 196
Query: 205 HNIARSGSTVILTIHQPSSRIQLLL---DHLIILARGQLMFQGPPKE 248
+ G T ++ H R+ ++L DHL ++ GQ++ +G +E
Sbjct: 197 LELKAKGITFLIIEH----RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 15/190 (7%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP------S 92
L + + +G ++MGPSG+GKST+L+ + +G+V +D +T+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 93 LIKRTS-AYIMQEDRLFPMLTVFETLMFAADFRL-GPISWSDKKQRVENLVDQLGLTTTR 150
I+R ++ Q+ L P+LT E + F+ G +S ++++R + L
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNI-AR 209
H I + + PP++ D+PT LDS + +++ + +
Sbjct: 139 ANH----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 210 SGSTVILTIH 219
G TV++ H
Sbjct: 195 DGKTVVVVTH 204
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 134 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ + S+ D +I++ +G+++ QG KE+
Sbjct: 192 IIIAARLSTVKN--ADRIIVMEKGKIVEQGKHKEL 224
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 98/215 (45%), Gaps = 11/215 (5%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE---TSPSLI 94
+L+ I +G + ++G SG+GKSTL L R G+V +DG + P+ +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTK-LIQRFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154
+R ++Q++ L + + + + ++ K + + +L NT +
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 155 GDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214
G+ I +++ P +L DE TS LD S + ++ +H I + G TV
Sbjct: 140 GEQGAGLSGGQRQRIA-IARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
I+ + S+ D +I++ +G+++ QG KE+
Sbjct: 198 IIIAARLSTVKN--ADRIIVMEKGKIVEQGKHKEL 230
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 15/190 (7%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP------S 92
L + + +G ++MGPSG+GKST+L+ + +G+V +D +T+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIG--CLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 93 LIKRTS-AYIMQEDRLFPMLTVFETLMFAADFRL-GPISWSDKKQRVENLVDQLGLTTTR 150
I+R ++ Q+ L P+LT E + F+ G +S ++++R + L
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNI-AR 209
H I + + PP++ D+PT LDS + +++ + +
Sbjct: 139 ANH----KPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 210 SGSTVILTIH 219
G TV++ H
Sbjct: 195 DGKTVVVVTH 204
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---- 90
E L+ ++ KG +T ++GP+G+GKSTL++ + G + + +G+V + K+ +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFA----ADFRLGPISWSDKKQRVENLVDQLG- 145
L Q + +TV E L+ + L + + + E +V++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 146 -LTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV 204
L + +H+ D IG ++ P ++ +D+P +G+ A+ + V
Sbjct: 137 ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHV 196
Query: 205 HNIARSGSTVILTIHQPSSRIQLLL---DHLIILARGQLMFQGPPKE 248
+ G T ++ H R+ ++L DHL ++ GQ++ +G +E
Sbjct: 197 LELKAKGITFLIIEH----RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---PSLIK 95
+NK+ G ++GPSG GK+T L +AG +G++ ++ + P
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPK--D 82
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG 155
R + + Q ++P +TV+E + F + P DK RV + L + N +
Sbjct: 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK--RVRWAAELLQIEELLNRY-- 138
Query: 156 DXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVI 215
+ I+ P +L +DEP S LD+ ++ ++ + +
Sbjct: 139 ---PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195
Query: 216 LTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVN 254
+ + + D + ++ RGQL+ G P EV L N
Sbjct: 196 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---PSLIK 95
+NK+ G ++GPSG GK+T L +AG +G++ ++ + P
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGRIYFGDRDVTYLPPK--D 83
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG 155
R + + Q ++P +TV+E + F + P DK RV + L + N +
Sbjct: 84 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK--RVRWAAELLQIEELLNRY-- 139
Query: 156 DXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVI 215
+ I+ P +L +DEP S LD+ ++ ++ + +
Sbjct: 140 ---PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 196
Query: 216 LTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVN 254
+ + + D + ++ RGQL+ G P EV L N
Sbjct: 197 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 235
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG---KETSP 91
+V ++ ++ + G A++GPSG GK+T L LAG S G++ D + P
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS--GEIYFDDVLVNDIPP 72
Query: 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151
R + Q L+P +TVFE + F R IS + ++RV + +L +
Sbjct: 73 KY--REVGMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLID---- 124
Query: 152 THIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS- 210
++ D + ++ P +L DEP S LD+ + ++ ++ +
Sbjct: 125 -NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 211 GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
G T + H + + + + + +G+L+ G P EV
Sbjct: 184 GITSVYVTHDQAEAMT-MASRIAVFNQGKLVQYGTPDEV 221
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 22/201 (10%)
Query: 29 GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL-DGK 87
G + + E L ++ D KG I AV+G +G GKSTLLD L G ++GK+ +
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG--IHRPIQGKIEVYQSI 68
Query: 88 ETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS--WSDKKQRVENLVDQLG 145
P AY +V + ++ + + S Q +D L
Sbjct: 69 GFVPQFFSSPFAY-----------SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLN 117
Query: 146 LTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH 205
L TH+ I I L+ LDEPTS LD + V+ +
Sbjct: 118 L-----THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 206 NIARSGS-TVILTIHQPSSRI 225
++A+S + TV+ T HQP+ +
Sbjct: 173 DLAQSQNMTVVFTTHQPNQVV 193
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 26/223 (11%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK-- 95
+L I+ +A I A GPSG GKST+ L R + G++T+DG+ ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPT-AGEITIDGQPIDNISLENW 74
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSD---------KKQRVENLVDQLGL 146
R+ + +D T+ E L + + G + D + VEN+ DQL
Sbjct: 75 RSQIGFVSQDSAIMAGTIRENLTYGLE---GDYTDEDLWQVLDLAFARSFVENMPDQL-- 129
Query: 147 TTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN 206
NT +G+ I + P +L LDE T+ LDS S S+++K +
Sbjct: 130 ----NTEVGERGVKISGGQRQRLA-IARAFLRNPKILMLDEATASLDSESE-SMVQKALD 183
Query: 207 IARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
G T ++ H+ S+ + D + + +GQ+ G E+
Sbjct: 184 SLMKGRTTLVIAHRLSTIVD--ADKIYFIEKGQITGSGKHNEL 224
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP------S 92
L + + +G ++ GPSG+GKST L+ + +G+V +D +T+ +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIG--CLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 93 LIKRTS-AYIMQEDRLFPMLTVFETLMFAADFRL-GPISWSDKKQRVENLVDQLGLTTTR 150
I+R ++ Q+ L P+LT E + F+ G S ++++R + L
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERF 138
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNI-AR 209
H I + + PP++ DEPT LDS + + + + +
Sbjct: 139 ANH----KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE 194
Query: 210 SGSTVILTIH 219
G TV++ H
Sbjct: 195 DGKTVVVVTH 204
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 16/206 (7%)
Query: 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-TSPSLIKRTSAYIMQEDR 106
+G + ++GPSG+GK+T+L +AG KG V + GK T KR + Q
Sbjct: 40 EGEMVGLLGPSGSGKTTILRLIAG--LERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA 97
Query: 107 LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXX 166
LF +TV++ + F R + + RV L+ + L + N +
Sbjct: 98 LFQHMTVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESYANRFPHE-----LSGGQ 150
Query: 167 XXXXXIGVDIIHGPPLLFLDEPTSGLDST---SAYSVIEKVHNIARSGSTVILTIHQPSS 223
+ + P +L DEP + +D+ + + +VH+ G T + H
Sbjct: 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--EMGVTSVFVTHDQEE 208
Query: 224 RIQLLLDHLIILARGQLMFQGPPKEV 249
++ + D +++L G + G P+EV
Sbjct: 209 ALE-VADRVLVLHEGNVEQFGTPEEV 233
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 32/211 (15%)
Query: 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIM 102
G+A +G I ++GP+G GK+T RI L G++T D +P K+ +Y
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTF-----ARI----LVGEITADEGSVTPE--KQILSYKP 336
Query: 103 QEDRLFPML--TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXX 160
Q R+FP TV + L A+ L SW E + +L L +++ D
Sbjct: 337 Q--RIFPNYDGTVQQYLENASKDALSTSSWF-----FEEVTKRLNLHRLLESNVND---- 385
Query: 161 XXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ 220
I + L LD+P+S LD Y V + + + R V I
Sbjct: 386 -LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 221 PSSRIQLLLDHLIILARGQLMFQGPPKEVTL 251
S + D +I+ F+G P++ L
Sbjct: 445 DLSIHDYIADRIIV-------FKGEPEKAGL 468
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 19/222 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLI 94
E +L I KG A +G SG GKSTL++ L R + G++ +DG L
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-LIPRFYDVT-SGQILIDGHNIKDFLT 410
Query: 95 K--RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK----QRVENLVD-QLGLT 147
R ++Q+D + TV E ++ LG + +D++ ++ N D + L
Sbjct: 411 GSLRNQIGLVQQDNILFSDTVKENIL------LGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 148 TTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNI 207
+T +G+ I ++ PP+L LDE TS LD S S+I++ ++
Sbjct: 465 QGYDTEVGERGVKLSGGQKQRLS-IARIFLNNPPILILDEATSALDLESE-SIIQEALDV 522
Query: 208 ARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249
T ++ H+ S+ D ++++ G ++ G +E+
Sbjct: 523 LSKDRTTLIVAHRLSTITH--ADKIVVIENGHIVETGTHREL 562
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK---ETSPSLIKRTSAYI-M 102
PKG + A+MGP+GAGKSTL LAG +G++ LDG+ E SP R ++
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 103 QEDRLFPMLTVFETLMFAADFRLG-----PISWSDKKQRVENLVDQLGLTTTRNTHIGDX 157
Q P +T+ L A +LG W+ K+ +E L +++
Sbjct: 87 QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE-------LLDWDESYLSRY 139
Query: 158 XXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS---GSTV 214
I ++ P LDE SGLD A V+ + N R G+ V
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVVARGVNAMRGPNFGALV 198
Query: 215 ILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLG 257
I + + IQ D + ++ G+++ G P E+ L + G
Sbjct: 199 ITHYQRILNYIQ--PDKVHVMMDGRVVATGGP-ELALELEAKG 238
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 105/227 (46%), Gaps = 18/227 (7%)
Query: 25 KKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL 84
K + T+ +E L+ ++ P+G A++G SG+GKST+ + L R G + L
Sbjct: 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN-LFTRFYDVD-SGSICL 402
Query: 85 DGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAA--DFRLGPISWSDKKQRVEN 139
DG + + ++R A + Q LF T+ + +AA ++ I + ++
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAME 461
Query: 140 LVDQL--GLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSA 197
++ + GL T IG+ I ++ P+L LDE TS LD+ S
Sbjct: 462 FIENMPQGLDTV----IGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 198 YSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244
++ + + ++ TV++ H+ S+ Q D ++++ G+++ +G
Sbjct: 517 RAIQAALDELQKN-KTVLVIAHRLSTIEQ--ADEILVVDEGEIIERG 560
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 42 ITGDAPKGCITAVMGPSGAGKSTLLDGLA------GRIASGSL--KGKVTLDGKETSPSL 93
I+ D + +TA++G S +GKST+++ + GRI SG + KGK L +E
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 94 IK-RTSAYIMQ--EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR 150
I+ + A + Q + L P + V E F + WS + +E ++L +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEH--FKDTVEAHGVRWS-HSELIEKASEKLRMVRLN 143
Query: 151 NTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE 202
+ + I + ++ P +L LDEPTS LD + +I+
Sbjct: 144 PEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 49 GCITAVMGPSGAGKSTLLDGLAG--RIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDR 106
G A++GPSGAGKST+L L I+SG ++ +DG++ S + T A +
Sbjct: 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIR----IDGQDIS----QVTQASLRSHIG 131
Query: 107 LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-------RNTHIGDXXX 159
+ P TV A + R G ++ + + VE G+ T +G+
Sbjct: 132 VVPQDTVLFNDTIADNIRYGRVTAGNDE--VEAAAQAAGIHDAIMAFPEGYRTQVGE-RG 188
Query: 160 XXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIH 219
I I+ P ++ LDE TS LD+++ ++ + + + +T+++ H
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA-H 247
Query: 220 QPSSRIQLLLDHLIILARGQLMFQG 244
+ S+ + D ++++ G ++ +G
Sbjct: 248 RLSTVVN--ADQILVIKDGCIVERG 270
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 28/248 (11%)
Query: 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDG 68
TG L F N+T+T + EV L I P G A++G SG+GKST +
Sbjct: 339 TGDLEFRNVTFT----------YPGREVPALRNINLKIPAGKTVALVGRSGSGKST-IAS 387
Query: 69 LAGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFA--ADF 123
L R +G + +DG +E + + ++ A + Q LF TV + +A ++
Sbjct: 388 LITRFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEY 445
Query: 124 RLGPISWSDKKQRVENLVDQL--GLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPP 181
I + + + ++++ GL +T IG+ I ++ P
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGL----DTIIGE-NGVLLSGGQRQRIAIARALLRDSP 500
Query: 182 LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241
+L LDE TS LD+ S ++ + + ++ +++++ H+ S+ Q D ++++ G ++
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIA-HRLSTIEQ--ADEIVVVEDGIIV 557
Query: 242 FQGPPKEV 249
+G E+
Sbjct: 558 ERGTHSEL 565
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 100/238 (42%), Gaps = 23/238 (9%)
Query: 25 KKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL 84
+ +E + + +L+ + G + AV+G +G+GKSTL++ L R+ +G+V +
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPE-RGRVEV 402
Query: 85 DGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQL 144
D + +K +I + ET++F+ + + W + + +V+
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQ--------ETVLFSGTIK-ENLKWGREDATDDEIVEAA 453
Query: 145 GLTTTRNTHIG---------DXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDST 195
+ + I + I ++ P +L LD+ TS +D
Sbjct: 454 KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513
Query: 196 SAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHV 253
+ +++ + + +T I+T P++ LL D +++L G++ G KE+ H
Sbjct: 514 TEKRILDGLKRYTKGCTTFIITQKIPTA---LLADKILVLHEGKVAGFGTHKELLEHC 568
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239
P +L DEPTS LD V+ + +A G T+++ H+ + + H+I L +G+
Sbjct: 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGK 230
Query: 240 LMFQGPPKEV 249
+ +G P++V
Sbjct: 231 IEEEGDPEQV 240
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 21/239 (8%)
Query: 5 PVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKST 64
P+ G + F ++++ + +V +L +T G +TA++GP+G+GKST
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRP---------DVLVLQGLTFTLRPGEVTALVGPNGSGKST 58
Query: 65 LLDGLAGRIASGSLKGKVTLDGK---ETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAA 121
+ L G++ LDGK + + R A + QE ++F ++ E + +
Sbjct: 59 VAALLQNLYQPTG--GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGL 115
Query: 122 DFR--LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHG 179
+ + I+ + K + + GL +T + D + +I
Sbjct: 116 TQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRK 172
Query: 180 PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238
P +L LD+ TS LD+ S V + ++ S +L I Q S ++ DH++ L G
Sbjct: 173 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGG 230
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 113/251 (45%), Gaps = 28/251 (11%)
Query: 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDG 68
TG + F N+T+T + +V L I P G A++G SG+GKST+
Sbjct: 339 TGDVEFRNVTFT----------YPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIA-S 387
Query: 69 LAGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFA--ADF 123
L R +G++ +DG +E + + ++ A + Q LF TV + +A +
Sbjct: 388 LITRFYDID-EGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEQY 445
Query: 124 RLGPISWSDKKQRVENLVDQL--GLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPP 181
I + + + ++++ GL +T IG+ I ++ P
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGL----DTVIGE-NGVLLSGGQRQRIAIARALLRDSP 500
Query: 182 LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241
+L LDE TS LD+ S ++ + + ++ +++++ H+ S+ + D ++++ G ++
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIA-HRLSTIEK--ADEIVVVEDGVIV 557
Query: 242 FQGPPKEVTLH 252
+G ++ H
Sbjct: 558 ERGTHNDLLEH 568
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 30 TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG 86
TW + + LN IT P+G + AV+G G GKS+LL L + ++G V + G
Sbjct: 12 TWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHVAIKG 66
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 37/218 (16%)
Query: 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQ 103
G+ KG + ++GP+G GK+T + LAG +GKV D T AY Q
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD----------LTVAYKPQ 424
Query: 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXX 163
+ TV+E L +L + + L+ LG+ + ++ D
Sbjct: 425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTE------LLKPLGIIDLYDRNVED-----LS 473
Query: 164 XXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
I ++ + LDEP++ LD +V + ++ L +
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533
Query: 224 RIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLGRKVP 261
I + D LI+ F+G P R GR +P
Sbjct: 534 MIDYVSDRLIV-------FEGEP-------GRHGRALP 557
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88
E+ +L ++ D G + A+MGP+G+GKSTL LAGR G V GK+
Sbjct: 12 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 66
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 37/218 (16%)
Query: 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQ 103
G+ KG + ++GP+G GK+T + LAG +GKV D T AY Q
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG--VEEPTEGKVEWD----------LTVAYKPQ 410
Query: 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXX 163
+ TV+E L +L + + L+ LG+ + ++ D
Sbjct: 411 YIKAEYEGTVYELLSKIDSSKLNSNFYKTE------LLKPLGIIDLYDRNVED-----LS 459
Query: 164 XXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
I ++ + LDEP++ LD +V + ++ L +
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
Query: 224 RIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLGRKVP 261
I + D LI+ F+G P R GR +P
Sbjct: 520 MIDYVSDRLIV-------FEGEP-------GRHGRALP 543
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88
E+ +L ++ D G + A+MGP+G+GKSTL LAGR G V GK+
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQ 103
P G A++G +G+GKST+ L R +G + + GK + + I+ + Q
Sbjct: 44 PSGTTCALVGHTGSGKSTIAK-LLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
Query: 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXX 163
+ LF + L D + + K ++ + ++ L +T +G+
Sbjct: 101 DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNKGMKLSG 158
Query: 164 XXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
I ++ P ++ DE TS LDS + Y + V ++ R T+I+ H+ S+
Sbjct: 159 GERQRIA-IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLST 216
Query: 224 RIQLLLDHLIILARGQLMFQGPPKEV 249
+ +I+L +G+++ +G K++
Sbjct: 217 ISS--AESIILLNKGKIVEKGTHKDL 240
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 34/249 (13%)
Query: 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGL 69
G + F N+ ++ KKK + L IT G A++GP+G+GK+T+++ L
Sbjct: 353 GEIEFKNVWFSYDKKKPV-----------LKDITFHIKPGQKVALVGPTGSGKTTIVN-L 400
Query: 70 AGRIASGSLKGKVTLDG---KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMF----AAD 122
R +G++ +DG ++ S ++ + ++Q+ LF TV E L + A D
Sbjct: 401 LMRFYDVD-RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATD 458
Query: 123 FRLGPISWSDKKQRVENLVDQL--GLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGP 180
I + K ++ + L G T + D + P
Sbjct: 459 ---EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA-----NP 510
Query: 181 PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240
+L LDE TS +D+ + S+ + + G T I+ H+ ++ D +I+L G++
Sbjct: 511 KILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN--ADLIIVLRDGEI 567
Query: 241 MFQGPPKEV 249
+ G E+
Sbjct: 568 VEMGKHDEL 576
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 28/222 (12%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK 95
V +L +T G +TA++GP+G+GKST+ L GKV LDG+ L++
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGE----PLVQ 85
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFR------------LGPISWSDKKQRVENLVDQ 143
Y+ + E L+F FR + I+ + + +
Sbjct: 86 YDHHYLHTQVAAVGQ----EPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS- 140
Query: 144 LGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEK 203
G +T +G+ + +I P LL LD+ TS LD+ + V
Sbjct: 141 -GFPQGYDTEVGE-TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRL 198
Query: 204 VHNIARSGS-TVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244
++ S TV+L HQ S + H++ L G + QG
Sbjct: 199 LYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSVCEQG 238
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 85/221 (38%), Gaps = 26/221 (11%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK 95
V +L +T G +TA++GP+G+GKST+ L GKV LDG+ L++
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGE----PLVQ 85
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFR------------LGPISWSDKKQRVENLVDQ 143
Y+ + E L+F FR + I+ + + +
Sbjct: 86 YDHHYLHTQVAAVGQ----EPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS- 140
Query: 144 LGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEK 203
G +T +G+ + +I P LL LD TS LD+ + V
Sbjct: 141 -GFPQGYDTEVGE-TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 204 VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244
++ S +L I Q S + H++ L G + QG
Sbjct: 199 LYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQG 238
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---SP 91
E L ++G+ G I ++GP+GAGKSTLL +AG + SG KG + G+ S
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSA 68
Query: 92 SLIKRTSAYIMQED 105
+ + AY+ Q+
Sbjct: 69 TKLALHRAYLSQQQ 82
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 85/221 (38%), Gaps = 26/221 (11%)
Query: 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK 95
V +L +T G +TA++GP+G+GKST+ L GKV LDG+ L++
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGE----PLVQ 85
Query: 96 RTSAYIMQEDRLFPMLTVFETLMFAADFR------------LGPISWSDKKQRVENLVDQ 143
Y+ + E L+F FR + I+ + + +
Sbjct: 86 YDHHYLHTQVAAVGQ----EPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFIS- 140
Query: 144 LGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEK 203
G +T +G+ + +I P LL LD TS LD+ + V
Sbjct: 141 -GFPQGYDTEVGE-TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 204 VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244
++ S +L I Q S + H++ L G + QG
Sbjct: 199 LYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQG 238
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---SP 91
E L ++G+ G I ++GP+GAGKSTLL +AG + SG KG + G+ S
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG--KGSIQFAGQPLEAWSA 68
Query: 92 SLIKRTSAYIMQED 105
+ + AY+ Q+
Sbjct: 69 TKLALHRAYLSQQQ 82
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 37/218 (16%)
Query: 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQ 103
G+ KG + ++GP+G GK+T + LAG +GK+ D T AY Q
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG--VEEPTEGKIEWD----------LTVAYKPQ 354
Query: 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDXXXXXXX 163
+ TV+E L +L + + L+ LG+ + + +
Sbjct: 355 YIKADYEGTVYELLSKIDASKLNSNFYKTE------LLKPLGIIDLYDREVNE-----LS 403
Query: 164 XXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223
I ++ + LDEP++ LD +V + ++ L +
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVL 463
Query: 224 RIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLGRKVP 261
I + D L + F+G P + GR +P
Sbjct: 464 XIDYVSDRLXV-------FEGEP-------GKYGRALP 487
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD-------GKETSPSLIKRTSAY 100
+G + ++GP+G GKST + LAG++ + D G E K +
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 101 IM-----QEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG 155
I Q L P + + + +D+ ++E +V L L I
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIEL--------LKKADETGKLEEVVKALELENVLEREI- 156
Query: 156 DXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVI 215
I ++ F DEP+S LD + + ++ G +V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 216 LTIH 219
+ H
Sbjct: 213 VVEH 216
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA-- 236
G L LDEPT GL ++E +H + G+TVI+ H + DH+I L
Sbjct: 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPE 883
Query: 237 ----RGQLMFQGPPKEV 249
G ++ G P+E+
Sbjct: 884 GGKEGGYIVATGTPEEI 900
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA- 236
+G L LDEPT+GL +++ +H + +G TV++ H + D++I L
Sbjct: 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGP 620
Query: 237 -----RGQLMFQGPPKEV 249
GQ++ G P+EV
Sbjct: 621 EGGDRGGQIVAVGTPEEV 638
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 23 KKKKIEGTWLK----EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLD 67
++++ +G WL+ E +L N ++ P G AV G SG+GKSTL++
Sbjct: 319 ERRRPDGRWLEVVGAREHNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 25/201 (12%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRT 97
+L I+ G ++G +G+GKSTLL + + +G++ +DG +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT---EGEIQIDG-------VSWD 85
Query: 98 SAYIMQEDRLFPMLTVFETLMFAADFR--LGPISWSDKKQRVENLVDQLGLTTTRNTHIG 155
S + Q + F ++ + +F+ FR L P + + Q + + D++GL + G
Sbjct: 86 SITLEQWRKAFGVIPQ-KVFIFSGTFRKNLDP-NAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 156 DXXX------XXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209
+ ++ +L LDEP++ LD + Y +I + A
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQIIRRTLKQAF 202
Query: 210 SGSTVILTIHQPSSRIQLLLD 230
+ TVIL +RI+ +L+
Sbjct: 203 ADCTVILC----EARIEAMLE 219
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA- 236
+G L LDEPT+GL +++ +H + +G TV++ H + D++I L
Sbjct: 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGP 922
Query: 237 -----RGQLMFQGPPKEVT 250
GQ++ G P+EV
Sbjct: 923 EGGDRGGQIVAVGTPEEVA 941
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 22 TKKKKIEGTWLK----EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLD 67
++++ +G WL+ E +L N ++ P G AV G SG+GKSTL++
Sbjct: 620 AERRRPDGRWLEVVGAREHNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA- 236
+G L LDEPT+GL +++ +H + +G TV++ H + D++I L
Sbjct: 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGP 922
Query: 237 -----RGQLMFQGPPKEVT 250
GQ++ G P+EV
Sbjct: 923 EGGDRGGQIVAVGTPEEVA 941
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 22 TKKKKIEGTWLK----EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLD 67
++++ +G WL+ E +L N ++ P G AV G SG+GKSTL++
Sbjct: 620 AERRRPDGRWLEVVGAREHNLKN-VSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---SP 91
E L ++G+ G I ++GP+GAGKSTLL AG + KG + G+ S
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSA 68
Query: 92 SLIKRTSAYIMQED 105
+ + AY+ Q+
Sbjct: 69 TKLALHRAYLSQQQ 82
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89
P G +T+V G SG+GKSTL++ + + + L G + G+ T
Sbjct: 666 PLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHT 708
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---SP 91
E L ++G+ G I ++GP+GAGKSTLL AG + KG + G+ S
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSA 68
Query: 92 SLIKRTSAYIMQED 105
+ + AY+ Q+
Sbjct: 69 TKLALHRAYLSQQQ 82
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLA---GRIASGSLKG 80
+I+ D KG +TAV+GP+G+GKS + D + G ++ SL+G
Sbjct: 17 RISVDFVKG-VTAVVGPNGSGKSNITDAIRWVLGEQSARSLRG 58
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 53 AVMGPSGAGKSTLLDGLAGRI 73
AV+GP+GAGKSTL++ L G +
Sbjct: 697 AVIGPNGAGKSTLINVLTGEL 717
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 32/189 (16%)
Query: 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRT 97
+L +IT KG + GP+G GK+TLL ++ + LKG++ +G P +
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNG---VPITKVKG 78
Query: 98 SAYIMQEDRLFPMLTVFETLMFAA----DFRLGPISWSDKKQRVENL-----VDQLGLTT 148
+ + E+ + P E + A ++ D + VE L + +L T
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGT 138
Query: 149 TRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA 208
R + ++ + LD+P +D S + V++ + I
Sbjct: 139 IRRVQLAST------------------LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 209 RSGSTVILT 217
+ VI++
Sbjct: 181 KEKGIVIIS 189
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 53 AVMGPSGAGKSTLLDGLAGRI 73
AV+GP+GAGKSTL++ L G +
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 53 AVMGPSGAGKSTLLDGLAGRI 73
AV+GP+GAGKSTL++ L G +
Sbjct: 703 AVIGPNGAGKSTLINVLTGEL 723
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From
Plasmodium Vivax
Length = 187
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 11/62 (17%)
Query: 30 TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG----SLKGK--VT 83
T ++ + +L++ T + P ++G G GK+ +++GLA +I G SLKG+ V+
Sbjct: 29 TEIRRAIQILSRRTKNNP-----ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83
Query: 84 LD 85
LD
Sbjct: 84 LD 85
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 185 LDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS--SRIQLLLDHLIILAR--GQL 240
LDEP++GL +++ + N+ R G+++ + H R L+D G++
Sbjct: 405 LDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEI 464
Query: 241 MFQGPPK 247
++ GPP+
Sbjct: 465 LYSGPPE 471
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 16 NLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS 75
NLT T + + W + +L I +G + AV G +GAGK++LL + G +
Sbjct: 13 NLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 72
Query: 76 GSLKGKVTLDGK 87
+GK+ G+
Sbjct: 73 S--EGKIKHSGR 82
>pdb|4I99|A Chain A, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
pdb|4I99|B Chain B, Crystal Structure Of The Smchead Bound To The C-winged
Helix Domain Of Scpa
Length = 354
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 52 TAVMGPSGAGKSTLLD-------GLAGRIASGSLKGKVTLDG-KETSPSLIKRTSAYIMQ 103
TA++G +G+GKS + D GL+ + S + G K P+ + Y
Sbjct: 29 TAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNN 88
Query: 104 EDRLFPM 110
EDR FP+
Sbjct: 89 EDRGFPI 95
>pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
Atpases
Length = 182
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 52 TAVMGPSGAGKSTLLD-------GLAGRIASGSLKGKVTLDG-KETSPSLIKRTSAYIMQ 103
TA++G +G+GKS + D GL+ + S + G K P+ + Y
Sbjct: 29 TAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRISDLIFAGSKNEPPAKYAEVAIYFNN 88
Query: 104 EDRLFPM 110
EDR FP+
Sbjct: 89 EDRGFPI 95
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 33 KEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS 92
K+ +L KI+ KG + G +GAGK+TLL+ L + S G V L GK P
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS--GTVNLFGK--XPG 86
Query: 93 LIKRTSAYIMQE---------DRLFPMLTVFETLMFAADFRLGPISWSDKKQRVE--NLV 141
+ ++ + Q ++ V + ++ A +G D + R E L+
Sbjct: 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLL 146
Query: 142 DQLGLTTTRNTHIGDXXXXXXXXXXXXXXXIGVDIIHGPPLLFLDEPTSGLD 193
+G + +IG G P +L LDEP +GLD
Sbjct: 147 KLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQ-----PQVLILDEPAAGLD 193
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 14 FSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG 71
+ + Y V K G + E VD L +G I + GPSG GKS++L L G
Sbjct: 138 YRDAGYDVLKVSAKTGEGIDELVDYL--------EGFICILAGPSGVGKSSILSRLTG 187
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV--TLDGKETSPSLIKRTSAYIMQED 105
KGC+ V G SG+GKSTL L + KGK+ LDG L + S ED
Sbjct: 24 KGCVIWVTGLSGSGKSTLACALNQMLYQ---KGKLCYILDGDNVRHGLNRDLS--FKAED 78
Query: 106 RLFPMLTVFETLMFAAD 122
R + V E AD
Sbjct: 79 RAENIRRVGEVAKLFAD 95
>pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases.
pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 182
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 52 TAVMGPSGAGKSTLLD-------GLAGRIASGSLKGKVTLDG-KETSPSLIKRTSAYIMQ 103
TA++G +G+GKS + D GL+ + S + G K P+ + Y
Sbjct: 29 TAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNN 88
Query: 104 EDRLFPM 110
EDR FP+
Sbjct: 89 EDRGFPI 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,071,733
Number of Sequences: 62578
Number of extensions: 650448
Number of successful extensions: 1741
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 156
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)