Query 039035
Match_columns 646
No_of_seqs 412 out of 2747
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 6E-110 1E-114 944.8 62.1 587 5-646 19-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 2E-105 4E-110 916.2 65.0 593 7-645 13-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 4E-104 9E-109 905.9 66.2 581 10-641 38-658 (659)
4 PLN03140 ABC transporter G fam 100.0 2E-101 5E-106 940.6 67.8 586 11-645 867-1470(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 3E-100 6E-105 934.5 62.1 598 10-641 28-694 (1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 7.9E-99 2E-103 921.7 65.5 577 11-644 759-1393(1394)
7 PLN03140 ABC transporter G fam 100.0 7.3E-99 2E-103 918.8 59.9 572 34-641 176-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 1.3E-97 3E-102 856.0 38.9 578 11-645 787-1387(1391)
9 KOG0065 Pleiotropic drug resis 100.0 4.4E-89 9.5E-94 785.6 40.9 573 34-641 126-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 6.4E-56 1.4E-60 424.9 23.5 233 11-272 2-238 (240)
11 COG1135 AbcC ABC-type metal io 100.0 5.6E-52 1.2E-56 416.7 22.7 238 11-273 1-245 (339)
12 COG1125 OpuBA ABC-type proline 100.0 1.1E-51 2.4E-56 403.0 20.6 221 11-251 1-225 (309)
13 COG1127 Ttg2A ABC-type transpo 100.0 2.2E-50 4.9E-55 392.4 22.5 222 10-251 7-235 (263)
14 COG1131 CcmA ABC-type multidru 100.0 7.3E-50 1.6E-54 417.0 26.5 223 11-254 4-229 (293)
15 COG3839 MalK ABC-type sugar tr 100.0 8.7E-50 1.9E-54 415.6 24.3 230 11-270 3-234 (338)
16 COG1136 SalX ABC-type antimicr 100.0 2E-49 4.4E-54 391.0 25.2 211 12-240 2-220 (226)
17 COG1120 FepC ABC-type cobalami 100.0 7.1E-50 1.5E-54 401.7 21.5 220 11-250 2-227 (258)
18 COG3842 PotA ABC-type spermidi 100.0 1E-49 2.3E-54 417.1 22.3 234 10-272 4-239 (352)
19 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-49 2.3E-54 376.8 18.9 221 11-252 1-223 (245)
20 COG1116 TauB ABC-type nitrate/ 100.0 4E-49 8.6E-54 389.1 23.2 204 11-238 3-207 (248)
21 COG3638 ABC-type phosphate/pho 100.0 6E-49 1.3E-53 381.4 20.7 222 11-251 3-237 (258)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.5E-48 3.3E-53 390.1 24.0 218 11-251 4-227 (254)
23 COG2884 FtsE Predicted ATPase 100.0 1.4E-48 3.1E-53 366.2 20.6 214 11-245 1-220 (223)
24 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-48 2.4E-53 392.0 20.4 222 11-252 2-228 (345)
25 COG1117 PstB ABC-type phosphat 100.0 6.9E-48 1.5E-52 367.8 18.8 235 10-270 6-248 (253)
26 TIGR02314 ABC_MetN D-methionin 100.0 6.3E-47 1.4E-51 402.0 28.2 222 11-250 1-229 (343)
27 PRK13537 nodulation ABC transp 100.0 1E-46 2.2E-51 396.6 28.7 220 10-251 6-227 (306)
28 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-46 3.4E-51 401.9 28.0 220 11-251 3-224 (356)
29 PRK11432 fbpC ferric transport 100.0 2E-46 4.3E-51 400.1 28.1 219 11-251 6-226 (351)
30 COG1124 DppF ABC-type dipeptid 100.0 8.5E-47 1.8E-51 369.2 23.0 222 11-251 3-231 (252)
31 TIGR03265 PhnT2 putative 2-ami 100.0 2E-46 4.4E-51 400.6 28.0 219 11-251 4-224 (353)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 2.9E-46 6.2E-51 400.1 28.5 223 9-251 3-228 (362)
33 cd03261 ABC_Org_Solvent_Resist 100.0 3.9E-46 8.5E-51 378.3 26.5 218 12-250 1-225 (235)
34 PRK09452 potA putrescine/sperm 100.0 4.5E-46 9.7E-51 400.1 28.0 224 6-251 9-234 (375)
35 PRK13536 nodulation factor exp 100.0 9.4E-46 2E-50 393.5 29.2 220 11-252 41-262 (340)
36 COG1122 CbiO ABC-type cobalt t 100.0 5.6E-46 1.2E-50 373.1 24.3 221 11-252 3-229 (235)
37 PRK10851 sulfate/thiosulfate t 100.0 1.8E-45 3.8E-50 393.4 28.1 221 11-251 2-226 (353)
38 COG1137 YhbG ABC-type (unclass 100.0 4.2E-47 9.2E-52 358.7 12.6 222 10-251 3-228 (243)
39 PRK11607 potG putrescine trans 100.0 3.4E-45 7.4E-50 393.9 28.8 219 11-251 19-239 (377)
40 TIGR01288 nodI ATP-binding ABC 100.0 3.3E-45 7.1E-50 385.1 28.1 220 10-251 3-224 (303)
41 cd03265 ABC_DrrA DrrA is the A 100.0 2.7E-45 5.8E-50 368.5 26.0 216 12-249 1-219 (220)
42 PRK11000 maltose/maltodextrin 100.0 3.6E-45 7.8E-50 393.8 28.4 219 11-251 3-223 (369)
43 TIGR00960 3a0501s02 Type II (G 100.0 2.7E-45 5.8E-50 367.4 24.8 210 11-240 1-216 (216)
44 COG3840 ThiQ ABC-type thiamine 100.0 7.3E-46 1.6E-50 345.2 18.9 215 12-250 2-218 (231)
45 cd03259 ABC_Carb_Solutes_like 100.0 3.6E-45 7.7E-50 365.7 25.3 211 12-244 1-213 (213)
46 PRK11153 metN DL-methionine tr 100.0 6.9E-45 1.5E-49 388.3 28.4 222 11-250 1-229 (343)
47 cd03296 ABC_CysA_sulfate_impor 100.0 8.8E-45 1.9E-49 369.3 27.3 220 11-250 2-225 (239)
48 cd03219 ABC_Mj1267_LivG_branch 100.0 6.5E-45 1.4E-49 369.4 26.2 219 12-250 1-231 (236)
49 cd03218 ABC_YhbG The ABC trans 100.0 7.5E-45 1.6E-49 368.0 26.4 216 12-249 1-220 (232)
50 PRK13643 cbiO cobalt transport 100.0 1.3E-44 2.7E-49 377.9 28.4 235 11-263 1-248 (288)
51 TIGR03522 GldA_ABC_ATP gliding 100.0 1E-44 2.2E-49 380.9 27.1 218 11-251 2-221 (301)
52 cd03260 ABC_PstB_phosphate_tra 100.0 6.1E-45 1.3E-49 367.5 24.3 216 12-248 1-226 (227)
53 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-44 3.1E-49 363.2 26.4 216 12-247 1-219 (220)
54 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-44 2.8E-49 361.6 25.7 211 12-244 1-213 (213)
55 PRK09536 btuD corrinoid ABC tr 100.0 9.1E-45 2E-49 392.2 26.4 220 11-250 3-227 (402)
56 PRK13637 cbiO cobalt transport 100.0 3E-44 6.4E-49 374.9 29.3 224 11-251 2-234 (287)
57 cd03269 ABC_putative_ATPase Th 100.0 1E-44 2.2E-49 361.6 24.6 210 12-244 1-210 (210)
58 TIGR01188 drrA daunorubicin re 100.0 9.6E-45 2.1E-49 381.4 25.6 207 36-252 6-214 (302)
59 cd03263 ABC_subfamily_A The AB 100.0 1.3E-44 2.8E-49 363.3 25.0 217 12-249 1-219 (220)
60 cd03258 ABC_MetN_methionine_tr 100.0 1.5E-44 3.3E-49 366.1 25.8 222 11-250 1-229 (233)
61 COG4152 ABC-type uncharacteriz 100.0 2.5E-45 5.5E-50 356.2 18.9 220 11-253 2-221 (300)
62 cd03256 ABC_PhnC_transporter A 100.0 1.3E-44 2.8E-49 368.3 24.8 220 12-250 1-233 (241)
63 PRK13631 cbiO cobalt transport 100.0 4.1E-44 8.8E-49 378.5 29.2 227 6-250 16-264 (320)
64 cd03266 ABC_NatA_sodium_export 100.0 1.8E-44 4E-49 361.8 25.2 216 11-244 1-218 (218)
65 PRK15079 oligopeptide ABC tran 100.0 4.1E-44 8.8E-49 379.9 29.2 234 10-251 7-251 (331)
66 PRK09493 glnQ glutamine ABC tr 100.0 2.8E-44 6.1E-49 365.8 26.7 219 11-250 1-224 (240)
67 PRK13634 cbiO cobalt transport 100.0 4.8E-44 1E-48 373.9 28.4 222 11-250 2-234 (290)
68 COG0411 LivG ABC-type branched 100.0 5.5E-45 1.2E-49 356.8 19.5 221 11-251 4-239 (250)
69 PRK13651 cobalt transporter AT 100.0 5.7E-44 1.2E-48 375.2 28.4 223 11-250 2-253 (305)
70 PRK13647 cbiO cobalt transport 100.0 7.1E-44 1.5E-48 369.8 28.8 218 11-249 4-225 (274)
71 PRK11264 putative amino-acid A 100.0 5.5E-44 1.2E-48 365.9 27.5 219 11-250 3-232 (250)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-44 4.7E-49 361.3 23.9 210 12-240 1-218 (218)
73 cd03224 ABC_TM1139_LivF_branch 100.0 2.6E-44 5.5E-49 361.6 24.4 215 12-250 1-220 (222)
74 TIGR01186 proV glycine betaine 100.0 3.3E-44 7.1E-49 383.4 26.6 207 35-251 5-219 (363)
75 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.1E-44 9E-49 365.1 26.1 218 12-250 1-224 (242)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 1.9E-44 4E-49 359.2 22.8 207 12-244 1-208 (208)
77 TIGR02315 ABC_phnC phosphonate 100.0 2.1E-44 4.6E-49 367.3 23.6 220 11-249 1-233 (243)
78 PRK13650 cbiO cobalt transport 100.0 7.5E-44 1.6E-48 370.5 27.8 220 11-250 4-228 (279)
79 PRK11831 putative ABC transpor 100.0 1.1E-43 2.4E-48 367.5 27.9 219 11-250 7-232 (269)
80 TIGR00972 3a0107s01c2 phosphat 100.0 1E-43 2.3E-48 363.2 27.3 217 11-250 1-231 (247)
81 TIGR02673 FtsE cell division A 100.0 6.5E-44 1.4E-48 356.7 25.2 208 11-239 1-214 (214)
82 cd03234 ABCG_White The White s 100.0 1E-43 2.2E-48 358.5 26.7 219 11-244 3-226 (226)
83 cd03292 ABC_FtsE_transporter F 100.0 5.5E-44 1.2E-48 357.2 24.5 208 12-240 1-214 (214)
84 COG0410 LivF ABC-type branched 100.0 3.9E-44 8.4E-49 348.3 22.2 218 11-251 3-226 (237)
85 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-44 6.4E-49 357.0 22.0 204 13-241 1-205 (205)
86 PRK10895 lipopolysaccharide AB 100.0 7.1E-44 1.5E-48 363.1 25.3 219 11-250 3-225 (241)
87 PRK10619 histidine/lysine/argi 100.0 1.4E-43 3E-48 364.5 27.6 220 10-250 4-240 (257)
88 PRK11629 lolD lipoprotein tran 100.0 1.5E-43 3.3E-48 358.8 27.5 217 11-246 5-229 (233)
89 PRK13646 cbiO cobalt transport 100.0 1.7E-43 3.7E-48 369.1 28.2 222 11-250 2-234 (286)
90 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.9E-43 4E-48 358.9 27.5 218 11-251 1-221 (236)
91 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.1E-44 2E-48 368.1 25.2 206 35-250 36-249 (269)
92 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-43 2.2E-48 355.0 24.0 208 12-240 1-213 (213)
93 PRK13641 cbiO cobalt transport 100.0 2.7E-43 5.8E-48 367.9 28.1 222 11-250 2-233 (287)
94 cd03257 ABC_NikE_OppD_transpor 100.0 1.7E-43 3.6E-48 357.0 25.5 217 11-244 1-228 (228)
95 PRK14273 phosphate ABC transpo 100.0 2.8E-43 6E-48 361.6 27.5 219 11-250 7-237 (254)
96 PRK11614 livF leucine/isoleuci 100.0 1.5E-43 3.3E-48 359.7 25.3 216 11-250 5-225 (237)
97 PRK13636 cbiO cobalt transport 100.0 3.4E-43 7.3E-48 366.3 28.5 220 11-251 5-231 (283)
98 PRK09473 oppD oligopeptide tra 100.0 3.2E-43 7E-48 373.1 28.7 229 11-251 12-251 (330)
99 PRK11022 dppD dipeptide transp 100.0 3.1E-43 6.7E-48 372.9 28.5 229 11-251 3-243 (326)
100 cd03264 ABC_drug_resistance_li 100.0 1.1E-43 2.5E-48 354.3 23.7 209 12-244 1-211 (211)
101 COG4175 ProV ABC-type proline/ 100.0 2E-44 4.3E-49 361.5 18.0 232 10-251 3-254 (386)
102 PRK14247 phosphate ABC transpo 100.0 3.2E-43 6.8E-48 360.3 27.4 225 11-250 3-233 (250)
103 PRK11124 artP arginine transpo 100.0 2.3E-43 5.1E-48 359.5 26.2 217 11-249 2-228 (242)
104 PRK13635 cbiO cobalt transport 100.0 3.3E-43 7.2E-48 365.6 27.8 219 11-250 5-228 (279)
105 PRK11248 tauB taurine transpor 100.0 3.1E-43 6.7E-48 361.2 27.1 213 11-247 1-216 (255)
106 PRK14267 phosphate ABC transpo 100.0 3.5E-43 7.6E-48 360.6 27.3 225 11-250 4-236 (253)
107 PRK10908 cell division protein 100.0 2.7E-43 5.9E-48 354.4 26.0 210 11-241 1-216 (222)
108 PRK13638 cbiO cobalt transport 100.0 3.9E-43 8.4E-48 363.9 27.8 218 11-250 1-224 (271)
109 PRK13644 cbiO cobalt transport 100.0 4.1E-43 8.8E-48 364.1 28.0 218 11-250 1-223 (274)
110 PRK13649 cbiO cobalt transport 100.0 5.9E-43 1.3E-47 364.2 28.7 222 11-250 2-233 (280)
111 PRK11308 dppF dipeptide transp 100.0 5.3E-43 1.2E-47 371.0 28.5 230 11-251 5-244 (327)
112 COG0444 DppD ABC-type dipeptid 100.0 2.8E-43 6.1E-48 359.0 25.2 228 12-251 2-243 (316)
113 PRK14242 phosphate transporter 100.0 5.5E-43 1.2E-47 359.1 27.6 224 8-250 3-236 (253)
114 TIGR02211 LolD_lipo_ex lipopro 100.0 3.4E-43 7.3E-48 353.4 25.4 211 12-241 2-220 (221)
115 TIGR03005 ectoine_ehuA ectoine 100.0 4E-43 8.7E-48 360.0 26.3 218 12-250 1-235 (252)
116 TIGR01978 sufC FeS assembly AT 100.0 4.1E-43 8.9E-48 357.7 26.2 220 12-250 1-233 (243)
117 TIGR03411 urea_trans_UrtD urea 100.0 5.6E-43 1.2E-47 356.7 27.1 218 11-249 2-229 (242)
118 PRK13548 hmuV hemin importer A 100.0 4.6E-43 1E-47 360.7 26.5 218 11-250 2-229 (258)
119 PRK13652 cbiO cobalt transport 100.0 5.5E-43 1.2E-47 363.7 27.2 219 11-250 3-226 (277)
120 PRK14268 phosphate ABC transpo 100.0 7.3E-43 1.6E-47 359.3 27.8 222 11-250 12-241 (258)
121 PRK10070 glycine betaine trans 100.0 5.6E-43 1.2E-47 378.1 28.1 230 11-250 4-253 (400)
122 PRK11300 livG leucine/isoleuci 100.0 5.5E-43 1.2E-47 359.5 26.6 220 11-250 5-242 (255)
123 PRK11231 fecE iron-dicitrate t 100.0 3.7E-43 8E-48 360.9 25.3 219 11-249 2-225 (255)
124 cd03225 ABC_cobalt_CbiO_domain 100.0 2.4E-43 5.2E-48 351.9 23.1 207 13-239 1-211 (211)
125 PRK11247 ssuB aliphatic sulfon 100.0 4.7E-43 1E-47 359.8 25.8 209 9-247 10-219 (257)
126 PRK13639 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 360.8 28.8 219 11-250 1-225 (275)
127 TIGR02769 nickel_nikE nickel i 100.0 7.8E-43 1.7E-47 360.4 27.1 228 11-250 2-239 (265)
128 PRK15093 antimicrobial peptide 100.0 1E-42 2.2E-47 369.9 28.4 230 11-251 3-248 (330)
129 PRK13633 cobalt transporter AT 100.0 9.9E-43 2.1E-47 362.4 27.7 225 10-251 3-233 (280)
130 PRK13648 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 359.8 28.3 220 10-250 6-230 (269)
131 PRK10575 iron-hydroxamate tran 100.0 6.2E-43 1.3E-47 361.2 25.9 223 7-249 7-235 (265)
132 TIGR03415 ABC_choXWV_ATP choli 100.0 5.9E-43 1.3E-47 375.3 26.3 229 12-250 1-253 (382)
133 PRK14235 phosphate transporter 100.0 1.4E-42 2.9E-47 359.0 27.6 223 10-250 18-250 (267)
134 PRK13645 cbiO cobalt transport 100.0 1E-42 2.2E-47 363.9 26.9 225 8-250 3-239 (289)
135 PRK14245 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 355.4 27.2 224 10-250 2-233 (250)
136 cd03235 ABC_Metallic_Cations A 100.0 3.1E-43 6.7E-48 351.7 21.6 209 13-244 1-213 (213)
137 PRK13632 cbiO cobalt transport 100.0 1E-42 2.3E-47 360.6 26.4 220 10-250 6-230 (271)
138 TIGR03740 galliderm_ABC gallid 100.0 7E-43 1.5E-47 351.6 24.3 210 12-248 1-210 (223)
139 PRK10253 iron-enterobactin tra 100.0 9.7E-43 2.1E-47 359.7 25.3 221 10-250 6-232 (265)
140 PRK09984 phosphonate/organopho 100.0 1.2E-42 2.6E-47 358.5 25.6 221 11-249 4-240 (262)
141 PRK14256 phosphate ABC transpo 100.0 2.9E-42 6.2E-47 353.6 28.3 226 9-250 2-235 (252)
142 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-42 2.5E-47 357.4 25.3 218 12-249 2-224 (256)
143 PRK13640 cbiO cobalt transport 100.0 2.2E-42 4.9E-47 360.0 27.7 223 10-251 4-232 (282)
144 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-42 2.8E-47 346.7 24.7 209 12-244 1-211 (211)
145 PRK10584 putative ABC transpor 100.0 2.9E-42 6.3E-47 348.3 27.2 215 10-243 5-227 (228)
146 TIGR03410 urea_trans_UrtE urea 100.0 1.2E-42 2.6E-47 351.5 24.3 213 12-249 1-219 (230)
147 PRK11144 modC molybdate transp 100.0 1.5E-42 3.2E-47 371.6 26.4 210 11-251 1-218 (352)
148 PRK10744 pstB phosphate transp 100.0 2.4E-42 5.2E-47 355.8 26.9 226 8-250 10-243 (260)
149 PRK10771 thiQ thiamine transpo 100.0 2E-42 4.3E-47 350.5 25.7 216 11-250 1-218 (232)
150 PRK14274 phosphate ABC transpo 100.0 2.9E-42 6.2E-47 355.0 27.1 227 7-250 8-242 (259)
151 TIGR00968 3a0106s01 sulfate AB 100.0 2.5E-42 5.4E-47 350.9 26.3 217 12-250 1-219 (237)
152 PRK14250 phosphate ABC transpo 100.0 1.6E-42 3.4E-47 353.3 24.7 213 11-250 3-220 (241)
153 PRK13642 cbiO cobalt transport 100.0 3.5E-42 7.7E-47 357.7 27.5 220 11-250 4-228 (277)
154 PRK14241 phosphate transporter 100.0 3.3E-42 7.2E-47 354.4 27.1 224 11-250 4-241 (258)
155 PRK14269 phosphate ABC transpo 100.0 2.8E-42 6.1E-47 352.5 26.3 222 11-250 2-229 (246)
156 COG4559 ABC-type hemin transpo 100.0 7.1E-43 1.5E-47 332.9 20.1 220 11-250 1-229 (259)
157 TIGR02142 modC_ABC molybdenum 100.0 2.3E-42 5E-47 370.6 26.7 210 16-251 4-221 (354)
158 COG4181 Predicted ABC-type tra 100.0 3.5E-43 7.6E-48 324.0 17.2 213 11-242 6-226 (228)
159 PRK15112 antimicrobial peptide 100.0 3E-42 6.4E-47 356.5 26.3 228 11-250 4-238 (267)
160 PRK14239 phosphate transporter 100.0 4.6E-42 9.9E-47 352.1 27.3 223 11-250 5-235 (252)
161 cd03300 ABC_PotA_N PotA is an 100.0 6E-42 1.3E-46 347.0 27.4 217 12-250 1-219 (232)
162 PRK14237 phosphate transporter 100.0 5.4E-42 1.2E-46 354.5 27.6 223 11-250 20-250 (267)
163 TIGR01277 thiQ thiamine ABC tr 100.0 4.5E-42 9.8E-47 343.4 26.1 210 12-245 1-212 (213)
164 cd03299 ABC_ModC_like Archeal 100.0 5E-42 1.1E-46 348.2 26.7 216 12-250 1-218 (235)
165 PRK14240 phosphate transporter 100.0 6.8E-42 1.5E-46 350.4 27.8 224 10-250 2-233 (250)
166 PRK14270 phosphate ABC transpo 100.0 5.6E-42 1.2E-46 351.3 27.1 223 11-250 4-234 (251)
167 cd03267 ABC_NatA_like Similar 100.0 2.9E-42 6.2E-47 350.2 24.5 223 12-244 1-236 (236)
168 PRK13547 hmuV hemin importer A 100.0 2.9E-42 6.3E-47 356.8 24.8 221 11-249 1-242 (272)
169 PRK14244 phosphate ABC transpo 100.0 4.4E-42 9.6E-47 352.0 25.8 224 11-250 5-236 (251)
170 PRK14259 phosphate ABC transpo 100.0 6.1E-42 1.3E-46 354.4 27.1 222 9-251 11-253 (269)
171 cd03233 ABC_PDR_domain1 The pl 100.0 4.3E-42 9.3E-47 340.7 24.5 194 11-244 3-202 (202)
172 COG4525 TauB ABC-type taurine 100.0 3.5E-42 7.5E-47 323.8 22.3 220 11-252 3-225 (259)
173 PRK14262 phosphate ABC transpo 100.0 7.5E-42 1.6E-46 350.1 26.7 223 11-250 3-233 (250)
174 PRK14248 phosphate ABC transpo 100.0 9.5E-42 2.1E-46 352.9 27.7 221 11-250 21-251 (268)
175 TIGR01184 ntrCD nitrate transp 100.0 3.5E-42 7.5E-47 348.2 23.7 201 39-249 1-202 (230)
176 KOG0058 Peptide exporter, ABC 100.0 5.7E-43 1.2E-47 385.6 19.3 225 5-251 459-691 (716)
177 COG4598 HisP ABC-type histidin 100.0 3.3E-43 7.2E-48 326.3 14.3 220 11-251 6-241 (256)
178 PRK10762 D-ribose transporter 100.0 3.9E-42 8.5E-47 386.1 26.0 219 11-249 4-228 (501)
179 PRK14272 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 348.7 27.5 224 11-250 4-235 (252)
180 PRK14253 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 348.4 27.1 223 11-250 3-232 (249)
181 COG1123 ATPase components of v 100.0 4.6E-42 1E-46 373.7 25.2 232 11-251 280-519 (539)
182 PRK14236 phosphate transporter 100.0 1.3E-41 2.8E-46 352.6 27.4 223 11-250 25-255 (272)
183 COG1123 ATPase components of v 100.0 7.3E-42 1.6E-46 372.1 26.1 229 11-252 5-245 (539)
184 PRK14249 phosphate ABC transpo 100.0 2.2E-41 4.7E-46 346.9 28.0 223 11-250 4-234 (251)
185 PRK13549 xylose transporter AT 100.0 7.2E-42 1.6E-46 384.4 26.7 221 11-249 5-230 (506)
186 PRK14271 phosphate ABC transpo 100.0 2.3E-41 5E-46 351.2 28.3 223 11-250 21-250 (276)
187 PRK14254 phosphate ABC transpo 100.0 2.4E-41 5.2E-46 352.6 28.4 228 2-250 28-268 (285)
188 cd03297 ABC_ModC_molybdenum_tr 100.0 1.2E-41 2.6E-46 340.5 25.0 205 12-244 2-214 (214)
189 PRK10418 nikD nickel transport 100.0 1.8E-41 4E-46 348.1 26.9 216 10-250 3-229 (254)
190 PRK14251 phosphate ABC transpo 100.0 2.4E-41 5.1E-46 346.6 26.8 223 11-250 4-234 (251)
191 PRK11701 phnK phosphonate C-P 100.0 2.6E-41 5.5E-46 347.8 27.1 219 11-250 6-240 (258)
192 PRK14238 phosphate transporter 100.0 2.9E-41 6.2E-46 349.8 27.5 221 11-250 24-254 (271)
193 PRK14258 phosphate ABC transpo 100.0 3.8E-41 8.3E-46 347.1 27.8 225 11-251 7-245 (261)
194 PRK14257 phosphate ABC transpo 100.0 3.3E-41 7.2E-46 357.4 27.9 227 9-251 78-313 (329)
195 PRK14260 phosphate ABC transpo 100.0 3E-41 6.5E-46 347.5 26.8 223 11-250 7-242 (259)
196 TIGR02982 heterocyst_DevA ABC 100.0 2E-41 4.4E-46 340.3 24.9 211 12-240 2-219 (220)
197 PRK09700 D-allose transporter 100.0 1.3E-41 2.9E-46 382.7 26.1 219 11-249 5-232 (510)
198 cd03213 ABCG_EPDR ABCG transpo 100.0 2.8E-41 6E-46 332.8 24.7 190 11-244 3-194 (194)
199 PRK14255 phosphate ABC transpo 100.0 5.3E-41 1.1E-45 344.2 27.6 223 11-250 5-235 (252)
200 TIGR03608 L_ocin_972_ABC putat 100.0 1.6E-41 3.5E-46 337.4 23.1 199 14-235 1-206 (206)
201 TIGR02770 nickel_nikD nickel i 100.0 2.3E-41 4.9E-46 342.3 24.4 203 38-250 1-214 (230)
202 PRK15439 autoinducer 2 ABC tra 100.0 3.1E-41 6.7E-46 379.3 28.0 214 11-250 11-228 (510)
203 PRK14275 phosphate ABC transpo 100.0 4.5E-41 9.7E-46 350.8 27.2 221 11-250 39-269 (286)
204 cd03252 ABCC_Hemolysin The ABC 100.0 7.3E-42 1.6E-46 347.4 20.5 215 12-251 1-225 (237)
205 PRK15056 manganese/iron transp 100.0 2.5E-41 5.4E-46 350.5 24.9 219 11-249 6-228 (272)
206 PRK10419 nikE nickel transport 100.0 4.6E-41 9.9E-46 347.7 26.5 228 11-250 3-240 (268)
207 COG2274 SunT ABC-type bacterio 100.0 4.1E-42 8.9E-47 392.3 20.5 220 10-252 470-697 (709)
208 PRK14261 phosphate ABC transpo 100.0 5.9E-41 1.3E-45 344.1 27.0 223 11-250 6-236 (253)
209 cd03232 ABC_PDR_domain2 The pl 100.0 3.2E-41 6.8E-46 331.9 23.9 187 11-244 3-192 (192)
210 cd03245 ABCC_bacteriocin_expor 100.0 2.1E-41 4.7E-46 340.0 21.8 210 11-244 2-220 (220)
211 PRK14265 phosphate ABC transpo 100.0 9.6E-41 2.1E-45 346.3 26.8 221 11-250 20-257 (274)
212 TIGR02323 CP_lyasePhnK phospho 100.0 9.8E-41 2.1E-45 342.5 26.6 219 11-250 3-237 (253)
213 PRK14243 phosphate transporter 100.0 8.2E-41 1.8E-45 345.1 26.1 221 11-250 10-247 (264)
214 PRK10261 glutathione transport 100.0 6.3E-41 1.4E-45 384.6 27.6 234 3-250 4-257 (623)
215 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-40 3.5E-45 340.6 27.6 220 11-249 7-239 (252)
216 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-41 4.3E-46 343.5 20.5 215 12-251 1-225 (234)
217 cd03254 ABCC_Glucan_exporter_l 100.0 2.8E-41 6E-46 341.3 21.4 215 11-250 2-225 (229)
218 TIGR01257 rim_protein retinal- 100.0 5.1E-41 1.1E-45 413.1 28.1 224 11-254 1937-2162(2272)
219 PRK13543 cytochrome c biogenes 100.0 8.6E-41 1.9E-45 334.4 24.7 203 10-237 10-212 (214)
220 TIGR02633 xylG D-xylose ABC tr 100.0 7.4E-41 1.6E-45 375.9 27.1 221 11-249 1-228 (500)
221 PRK14246 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 342.3 26.5 224 10-251 9-241 (257)
222 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.9E-41 4.2E-46 344.5 20.0 217 12-252 1-227 (238)
223 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.6E-41 7.9E-46 392.0 24.8 213 10-250 450-672 (686)
224 PRK14263 phosphate ABC transpo 100.0 1.8E-40 3.9E-45 341.9 27.1 222 10-250 7-244 (261)
225 PRK10261 glutathione transport 100.0 1.2E-40 2.5E-45 382.4 28.5 230 11-250 313-552 (623)
226 PRK11174 cysteine/glutathione 100.0 3.1E-41 6.7E-46 386.3 23.5 215 10-251 348-572 (588)
227 PRK11176 lipid transporter ATP 100.0 4E-41 8.6E-46 385.0 24.0 218 10-251 340-567 (582)
228 PRK14266 phosphate ABC transpo 100.0 2.1E-40 4.6E-45 339.4 26.9 221 11-250 3-233 (250)
229 PRK13538 cytochrome c biogenes 100.0 9.4E-41 2E-45 331.6 23.4 200 11-235 1-202 (204)
230 PRK11288 araG L-arabinose tran 100.0 1E-40 2.2E-45 374.6 26.6 216 11-246 4-224 (501)
231 PRK14264 phosphate ABC transpo 100.0 2.3E-40 4.9E-45 348.5 27.5 228 5-250 39-288 (305)
232 PRK03695 vitamin B12-transport 100.0 6.9E-41 1.5E-45 342.6 22.8 200 38-249 11-220 (248)
233 COG4988 CydD ABC-type transpor 100.0 8.9E-41 1.9E-45 362.1 24.6 215 11-251 320-543 (559)
234 COG4161 ArtP ABC-type arginine 100.0 3.6E-41 7.7E-46 307.7 17.5 217 11-248 2-227 (242)
235 COG1129 MglA ABC-type sugar tr 100.0 1.2E-40 2.5E-45 360.5 24.6 216 10-245 7-228 (500)
236 PRK09580 sufC cysteine desulfu 100.0 2.9E-40 6.3E-45 337.8 26.1 220 11-249 1-233 (248)
237 PRK14252 phosphate ABC transpo 100.0 4.9E-40 1.1E-44 339.6 27.9 223 10-250 15-248 (265)
238 COG4604 CeuD ABC-type enteroch 100.0 4.3E-42 9.2E-47 323.8 11.3 221 11-251 1-225 (252)
239 PRK10982 galactose/methyl gala 100.0 1.1E-40 2.4E-45 373.5 24.9 216 14-249 1-221 (491)
240 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-40 3E-45 329.7 22.6 196 12-235 1-198 (201)
241 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-40 2.7E-45 344.4 23.0 216 10-251 1-225 (275)
242 PRK10247 putative ABC transpor 100.0 1.5E-40 3.4E-45 335.1 22.9 209 11-245 7-221 (225)
243 PRK15134 microcin C ABC transp 100.0 2.6E-40 5.6E-45 373.8 27.2 225 11-250 5-245 (529)
244 KOG0057 Mitochondrial Fe/S clu 100.0 6.1E-41 1.3E-45 358.0 20.8 217 8-251 348-574 (591)
245 TIGR03269 met_CoM_red_A2 methy 100.0 2.3E-40 5.1E-45 373.5 26.7 219 12-252 1-259 (520)
246 TIGR01257 rim_protein retinal- 100.0 2.8E-40 6E-45 406.7 29.2 222 11-253 928-1151(2272)
247 cd03230 ABC_DR_subfamily_A Thi 100.0 2.2E-40 4.7E-45 320.5 22.3 171 12-240 1-173 (173)
248 PRK13549 xylose transporter AT 100.0 1.3E-40 2.8E-45 374.3 23.9 222 11-249 259-492 (506)
249 PRK10790 putative multidrug tr 100.0 1.8E-40 3.8E-45 380.3 25.4 215 10-251 339-563 (592)
250 PRK15134 microcin C ABC transp 100.0 2.6E-40 5.7E-45 373.7 26.1 230 11-250 275-514 (529)
251 KOG0055 Multidrug/pheromone ex 100.0 6E-41 1.3E-45 388.4 21.2 222 8-251 347-576 (1228)
252 TIGR03269 met_CoM_red_A2 methy 100.0 3.6E-40 7.7E-45 372.0 27.0 228 11-251 279-517 (520)
253 COG1132 MdlB ABC-type multidru 100.0 7.4E-41 1.6E-45 381.4 21.4 219 9-251 326-552 (567)
254 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-40 3.8E-45 333.6 21.5 209 11-245 2-220 (221)
255 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-40 2.5E-45 389.3 23.4 215 10-251 476-700 (710)
256 PRK13546 teichoic acids export 100.0 1.9E-39 4.2E-44 334.2 29.3 223 9-251 2-232 (264)
257 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.7E-40 1.2E-44 330.7 24.8 191 35-244 34-224 (224)
258 TIGR00958 3a01208 Conjugate Tr 100.0 1E-40 2.2E-45 388.7 22.2 217 9-251 476-702 (711)
259 cd03248 ABCC_TAP TAP, the Tran 100.0 9.1E-41 2E-45 336.9 19.0 215 4-240 4-226 (226)
260 PRK11160 cysteine/glutathione 100.0 1.6E-40 3.4E-45 378.7 23.3 217 10-251 337-562 (574)
261 PRK13539 cytochrome c biogenes 100.0 4.2E-40 9E-45 327.7 22.5 199 11-237 2-200 (207)
262 cd03253 ABCC_ATM1_transporter 100.0 2.1E-40 4.5E-45 336.4 20.6 213 12-250 1-223 (236)
263 cd03217 ABC_FeS_Assembly ABC-t 100.0 5E-40 1.1E-44 325.4 22.7 188 12-253 1-195 (200)
264 COG4987 CydC ABC-type transpor 100.0 5.1E-41 1.1E-45 358.4 16.5 216 11-251 336-561 (573)
265 TIGR01189 ccmA heme ABC export 100.0 4.2E-40 9E-45 325.4 21.9 195 12-234 1-197 (198)
266 PRK09700 D-allose transporter 100.0 2.9E-40 6.3E-45 371.8 23.6 214 11-246 265-493 (510)
267 PRK09544 znuC high-affinity zi 100.0 7.1E-40 1.5E-44 335.4 24.0 202 11-250 4-208 (251)
268 TIGR02324 CP_lyasePhnL phospho 100.0 1.2E-39 2.5E-44 328.4 24.6 211 11-236 1-223 (224)
269 TIGR03375 type_I_sec_LssB type 100.0 3.1E-40 6.7E-45 384.7 23.1 218 10-252 462-689 (694)
270 cd03215 ABC_Carb_Monos_II This 100.0 6.7E-40 1.5E-44 319.7 21.5 172 11-240 4-182 (182)
271 cd03229 ABC_Class3 This class 100.0 5.9E-40 1.3E-44 319.0 21.0 172 12-239 1-178 (178)
272 TIGR01193 bacteriocin_ABC ABC- 100.0 4.1E-40 8.8E-45 384.5 23.7 216 10-251 472-697 (708)
273 cd03288 ABCC_SUR2 The SUR doma 100.0 6E-40 1.3E-44 337.4 21.4 220 6-251 14-243 (257)
274 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-40 1.5E-44 367.9 23.7 221 11-248 257-489 (500)
275 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.6E-39 3.4E-44 323.6 23.2 200 10-246 5-207 (207)
276 TIGR01166 cbiO cobalt transpor 100.0 1.2E-39 2.6E-44 320.0 21.6 178 36-222 5-188 (190)
277 PRK13545 tagH teichoic acids e 100.0 3.8E-39 8.3E-44 352.2 27.7 214 11-253 21-234 (549)
278 PRK13657 cyclic beta-1,2-gluca 100.0 9.8E-40 2.1E-44 373.7 24.1 215 10-250 333-557 (588)
279 PRK10938 putative molybdenum t 100.0 7.3E-40 1.6E-44 366.9 22.5 210 11-250 3-223 (490)
280 cd03246 ABCC_Protease_Secretio 100.0 1.1E-39 2.4E-44 315.6 20.7 170 12-240 1-173 (173)
281 COG4172 ABC-type uncharacteriz 100.0 2.6E-39 5.7E-44 333.1 24.5 233 10-251 275-516 (534)
282 cd03247 ABCC_cytochrome_bd The 100.0 1E-39 2.3E-44 317.2 20.3 176 12-244 1-178 (178)
283 COG3845 ABC-type uncharacteriz 100.0 1.6E-39 3.6E-44 344.6 22.5 215 11-245 4-223 (501)
284 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-39 2.8E-44 371.7 23.5 217 10-250 329-555 (571)
285 PRK13540 cytochrome c biogenes 100.0 2.1E-39 4.5E-44 321.0 21.6 195 11-233 1-197 (200)
286 TIGR01842 type_I_sec_PrtD type 100.0 1.7E-39 3.6E-44 368.5 23.3 219 10-250 315-541 (544)
287 COG4148 ModC ABC-type molybdat 100.0 2.8E-40 6E-45 326.5 14.6 195 41-251 16-218 (352)
288 PRK10762 D-ribose transporter 100.0 2.5E-39 5.3E-44 363.4 24.2 204 38-249 267-482 (501)
289 TIGR01846 type_I_sec_HlyB type 100.0 2.7E-39 5.8E-44 376.7 23.2 217 10-251 454-680 (694)
290 TIGR03771 anch_rpt_ABC anchore 100.0 6.6E-39 1.4E-43 322.8 22.6 196 44-250 1-200 (223)
291 TIGR02204 MsbA_rel ABC transpo 100.0 4.2E-39 9.2E-44 367.9 23.7 217 10-250 336-562 (576)
292 PRK11288 araG L-arabinose tran 100.0 4.6E-39 9.9E-44 361.3 22.6 205 37-249 267-483 (501)
293 cd03214 ABC_Iron-Siderophores_ 100.0 3E-39 6.5E-44 314.6 18.2 176 13-244 1-180 (180)
294 PRK10789 putative multidrug tr 100.0 4.8E-39 1E-43 366.3 23.0 217 10-251 312-538 (569)
295 KOG0055 Multidrug/pheromone ex 100.0 1.8E-39 3.8E-44 376.3 19.0 222 8-251 984-1213(1228)
296 TIGR01187 potA spermidine/putr 100.0 1.2E-38 2.6E-43 338.0 23.4 188 54-251 1-190 (325)
297 cd03250 ABCC_MRP_domain1 Domai 100.0 8.4E-39 1.8E-43 317.6 20.1 196 12-239 1-204 (204)
298 TIGR01192 chvA glucan exporter 100.0 2E-38 4.3E-43 362.1 25.8 216 10-251 333-558 (585)
299 PTZ00265 multidrug resistance 100.0 4.9E-39 1.1E-43 395.4 22.3 220 10-250 1164-1451(1466)
300 COG0396 sufC Cysteine desulfur 100.0 4.5E-38 9.8E-43 304.5 24.3 231 11-260 3-242 (251)
301 PRK15439 autoinducer 2 ABC tra 100.0 1.7E-38 3.6E-43 357.2 23.9 204 38-249 278-490 (510)
302 COG4618 ArpD ABC-type protease 100.0 6.5E-39 1.4E-43 339.3 19.1 229 3-253 325-562 (580)
303 cd03228 ABCC_MRP_Like The MRP 100.0 1.6E-38 3.5E-43 306.9 19.8 168 12-239 1-171 (171)
304 cd03290 ABCC_SUR1_N The SUR do 100.0 3.3E-38 7.1E-43 316.6 22.0 201 13-239 2-218 (218)
305 cd03216 ABC_Carb_Monos_I This 100.0 4.3E-38 9.2E-43 301.5 21.6 158 12-242 1-162 (163)
306 COG4586 ABC-type uncharacteriz 100.0 9.4E-39 2E-43 315.2 16.4 234 11-254 3-249 (325)
307 PRK13541 cytochrome c biogenes 100.0 6.4E-38 1.4E-42 309.1 21.6 193 11-233 1-193 (195)
308 PRK10535 macrolide transporter 100.0 1.6E-37 3.4E-42 357.7 27.9 221 11-250 4-231 (648)
309 COG4619 ABC-type uncharacteriz 100.0 5.8E-39 1.3E-43 295.3 12.0 194 35-240 15-212 (223)
310 TIGR02868 CydC thiol reductant 100.0 2.7E-38 5.8E-43 357.7 19.3 188 10-221 333-529 (529)
311 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-37 2.9E-42 299.0 20.9 164 12-239 1-164 (166)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.3E-37 7.1E-42 320.1 25.4 200 11-250 39-246 (282)
313 COG1119 ModF ABC-type molybden 100.0 4E-38 8.7E-43 308.5 17.2 215 11-245 31-256 (257)
314 PLN03232 ABC transporter C fam 100.0 8.4E-38 1.8E-42 387.5 24.1 217 9-251 1232-1458(1495)
315 PRK15064 ABC transporter ATP-b 100.0 2.1E-37 4.6E-42 350.1 24.9 211 11-251 1-242 (530)
316 TIGR02857 CydD thiol reductant 100.0 6.6E-38 1.4E-42 354.4 20.5 201 10-235 319-529 (529)
317 PLN03130 ABC transporter C fam 100.0 1.3E-37 2.8E-42 386.2 24.5 217 9-251 1235-1461(1622)
318 COG4608 AppF ABC-type oligopep 100.0 2E-37 4.4E-42 309.8 20.9 195 11-251 4-199 (268)
319 PRK10522 multidrug transporter 100.0 2.2E-37 4.7E-42 351.3 23.9 204 10-243 321-530 (547)
320 PRK10982 galactose/methyl gala 100.0 2E-37 4.2E-42 347.3 23.1 215 11-247 250-476 (491)
321 PRK11819 putative ABC transpor 100.0 3.7E-37 8.1E-42 349.6 24.6 210 10-250 5-249 (556)
322 PRK10938 putative molybdenum t 100.0 1.8E-37 3.9E-42 347.6 21.5 214 11-244 260-485 (490)
323 KOG0056 Heavy metal exporter H 100.0 3.8E-38 8.3E-43 329.5 14.7 226 4-251 529-761 (790)
324 PRK15177 Vi polysaccharide exp 100.0 3.8E-37 8.2E-42 307.7 20.9 194 37-254 1-195 (213)
325 COG4172 ABC-type uncharacteriz 100.0 4.6E-37 1E-41 316.6 21.7 229 11-251 6-247 (534)
326 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.3E-37 9.4E-42 349.1 23.8 211 10-243 336-551 (555)
327 COG4674 Uncharacterized ABC-ty 100.0 1.1E-37 2.4E-42 293.5 15.1 220 10-250 4-234 (249)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.2E-36 2.6E-41 310.4 23.7 179 38-239 9-193 (246)
329 PRK15064 ABC transporter ATP-b 100.0 7.6E-37 1.6E-41 345.6 24.3 202 11-250 319-524 (530)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-36 2.2E-41 345.9 24.8 210 11-251 4-248 (552)
331 TIGR00957 MRP_assoc_pro multi 100.0 5.4E-37 1.2E-41 380.9 24.2 217 9-251 1282-1508(1522)
332 PTZ00243 ABC transporter; Prov 100.0 5.5E-37 1.2E-41 380.1 24.0 216 10-251 1307-1533(1560)
333 PTZ00265 multidrug resistance 100.0 3.9E-37 8.5E-42 378.6 21.8 213 11-238 382-655 (1466)
334 PRK11819 putative ABC transpor 100.0 6.1E-36 1.3E-40 339.7 26.1 203 11-248 324-530 (556)
335 TIGR01271 CFTR_protein cystic 100.0 4.1E-36 8.9E-41 372.0 25.3 215 9-250 1215-1439(1490)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-35 2.7E-40 337.0 26.0 202 11-247 322-527 (552)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.8E-36 1E-40 307.3 20.1 200 16-244 5-220 (255)
338 PRK13409 putative ATPase RIL; 100.0 8.3E-36 1.8E-40 338.4 24.0 197 11-246 340-537 (590)
339 COG1101 PhnK ABC-type uncharac 100.0 5.1E-36 1.1E-40 286.6 17.5 218 12-244 2-231 (263)
340 PRK10636 putative ABC transpor 100.0 2.5E-35 5.4E-40 338.8 25.0 202 11-251 312-517 (638)
341 COG1134 TagH ABC-type polysacc 100.0 8.8E-35 1.9E-39 285.4 23.8 226 11-255 3-240 (249)
342 KOG0059 Lipid exporter ABCA1 a 100.0 1.5E-35 3.2E-40 350.7 20.4 223 11-254 564-790 (885)
343 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.3E-35 1.4E-39 273.8 19.7 144 12-239 1-144 (144)
344 PRK11147 ABC transporter ATPas 100.0 8.1E-35 1.7E-39 335.0 24.4 204 11-249 319-526 (635)
345 COG4136 ABC-type uncharacteriz 100.0 2.1E-35 4.6E-40 266.9 13.8 192 11-222 2-196 (213)
346 PLN03073 ABC transporter F fam 100.0 2.8E-34 6.1E-39 331.6 26.6 207 10-252 507-715 (718)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 1.2E-34 2.6E-39 280.1 19.7 154 15-248 4-160 (177)
348 TIGR00954 3a01203 Peroxysomal 100.0 8.3E-35 1.8E-39 335.6 21.1 200 10-237 450-653 (659)
349 PRK10636 putative ABC transpor 100.0 2.3E-34 4.9E-39 330.8 24.4 208 11-250 1-235 (638)
350 PLN03232 ABC transporter C fam 100.0 1.3E-34 2.9E-39 359.1 24.1 207 11-251 614-828 (1495)
351 COG4167 SapF ABC-type antimicr 100.0 1.2E-34 2.6E-39 270.0 17.6 229 11-251 4-239 (267)
352 COG5265 ATM1 ABC-type transpor 100.0 4E-35 8.6E-40 304.3 13.9 219 9-251 260-486 (497)
353 cd03238 ABC_UvrA The excision 100.0 5.1E-34 1.1E-38 275.5 20.0 157 35-240 7-166 (176)
354 PLN03130 ABC transporter C fam 100.0 3.4E-34 7.4E-39 355.8 23.0 206 11-251 614-828 (1622)
355 PRK11147 ABC transporter ATPas 100.0 1E-33 2.2E-38 326.0 24.7 207 11-250 3-242 (635)
356 COG4107 PhnK ABC-type phosphon 100.0 3.6E-34 7.9E-39 264.8 16.0 217 11-251 6-241 (258)
357 COG4133 CcmA ABC-type transpor 100.0 2.3E-34 5.1E-39 270.5 14.3 188 12-223 3-192 (209)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-33 5E-38 267.0 19.9 153 14-239 2-157 (157)
359 PRK13409 putative ATPase RIL; 100.0 1.1E-33 2.5E-38 320.9 18.2 181 37-238 88-287 (590)
360 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-33 6E-38 347.8 23.1 210 11-251 636-850 (1522)
361 TIGR01271 CFTR_protein cystic 100.0 1.9E-32 4.1E-37 339.5 24.2 191 36-250 439-635 (1490)
362 COG0488 Uup ATPase components 100.0 5.3E-32 1.1E-36 300.3 20.4 207 11-249 3-238 (530)
363 PLN03073 ABC transporter F fam 100.0 5.3E-32 1.1E-36 312.7 17.7 215 11-249 177-429 (718)
364 PTZ00243 ABC transporter; Prov 100.0 1.7E-31 3.8E-36 331.2 21.3 191 35-250 672-869 (1560)
365 COG4778 PhnL ABC-type phosphon 100.0 1.2E-31 2.7E-36 247.3 14.4 214 10-237 3-227 (235)
366 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-30 2.4E-35 263.4 20.6 191 35-244 7-226 (226)
367 KOG0054 Multidrug resistance-a 100.0 2E-30 4.3E-35 307.9 22.9 206 11-250 518-730 (1381)
368 KOG0054 Multidrug resistance-a 100.0 9.6E-31 2.1E-35 310.5 19.8 219 7-251 1134-1362(1381)
369 PF00005 ABC_tran: ABC transpo 100.0 3E-31 6.5E-36 246.1 12.2 134 39-190 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.5E-29 3.3E-34 258.6 19.7 196 36-246 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 1.1E-28 2.3E-33 267.7 21.8 203 38-248 274-487 (500)
372 COG0488 Uup ATPase components 100.0 9.4E-29 2E-33 274.4 21.8 201 11-250 321-524 (530)
373 COG4138 BtuD ABC-type cobalami 100.0 2.4E-30 5.1E-35 239.8 6.2 197 38-250 14-220 (248)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 3.1E-29 6.7E-34 247.4 13.9 166 40-237 14-190 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.1E-27 2.4E-32 244.1 14.3 184 35-236 14-234 (243)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.3E-27 5E-32 243.2 11.1 186 45-236 22-242 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.6E-28 3.5E-33 244.9 1.9 177 35-237 16-204 (212)
378 cd03240 ABC_Rad50 The catalyti 99.9 7.1E-27 1.5E-31 231.9 13.0 166 41-237 15-197 (204)
379 COG3845 ABC-type uncharacteriz 99.9 7.8E-26 1.7E-30 240.7 21.2 221 11-249 257-490 (501)
380 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.5E-26 7.7E-31 228.6 15.7 179 40-239 18-210 (213)
381 COG4615 PvdE ABC-type sideroph 99.9 9E-27 1.9E-31 239.8 10.4 206 10-244 321-530 (546)
382 PRK00635 excinuclease ABC subu 99.9 4.8E-25 1E-29 268.6 24.7 207 37-251 609-906 (1809)
383 COG4178 ABC-type uncharacteriz 99.9 3E-25 6.6E-30 245.2 16.4 196 10-236 391-587 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 1.9E-24 4.1E-29 253.8 21.7 126 111-251 792-927 (943)
385 COG4170 SapD ABC-type antimicr 99.9 2.9E-25 6.2E-30 211.5 11.4 231 11-252 3-249 (330)
386 TIGR00630 uvra excinuclease AB 99.9 3.8E-23 8.2E-28 242.5 24.1 125 110-249 789-923 (924)
387 KOG0927 Predicted transporter 99.9 1.6E-24 3.4E-29 231.6 11.4 203 10-248 388-593 (614)
388 KOG0927 Predicted transporter 99.9 7.3E-24 1.6E-28 226.5 13.3 214 11-250 75-308 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.8E-23 6E-28 205.2 14.9 171 38-239 11-192 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-23 2.7E-28 215.0 11.1 182 46-237 20-233 (247)
391 COG1245 Predicted ATPase, RNas 99.9 9E-23 1.9E-27 214.0 16.7 173 39-236 357-530 (591)
392 KOG2355 Predicted ABC-type tra 99.9 3.6E-22 7.8E-27 190.0 15.6 214 8-252 10-238 (291)
393 KOG0060 Long-chain acyl-CoA tr 99.9 1E-21 2.2E-26 211.6 17.0 203 11-237 433-641 (659)
394 KOG0066 eIF2-interacting prote 99.9 5.9E-22 1.3E-26 205.9 13.5 198 2-237 577-776 (807)
395 PF01061 ABC2_membrane: ABC-2 99.9 2.7E-23 5.8E-28 205.2 1.0 207 375-582 1-210 (210)
396 KOG0062 ATPase component of AB 99.9 7.4E-22 1.6E-26 210.2 10.0 202 11-250 80-284 (582)
397 KOG0062 ATPase component of AB 99.9 4.3E-21 9.3E-26 204.4 14.0 205 4-242 355-559 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 9.1E-21 2E-25 189.3 14.2 171 39-240 14-212 (213)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 7.1E-21 1.5E-25 188.5 11.0 147 38-244 16-172 (200)
400 COG1245 Predicted ATPase, RNas 99.8 2.6E-20 5.6E-25 195.6 10.4 172 46-237 97-288 (591)
401 COG2401 ABC-type ATPase fused 99.8 1.6E-19 3.5E-24 187.5 14.5 207 11-241 357-588 (593)
402 cd03283 ABC_MutS-like MutS-lik 99.8 5.7E-20 1.2E-24 181.6 9.5 135 36-222 14-149 (199)
403 cd03239 ABC_SMC_head The struc 99.8 5.7E-19 1.2E-23 171.4 16.2 74 162-237 95-172 (178)
404 cd03241 ABC_RecN RecN ATPase i 99.8 1.1E-18 2.3E-23 181.5 15.6 76 161-239 170-249 (276)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.5E-19 5.5E-24 180.0 8.3 152 36-245 17-175 (222)
406 PRK00635 excinuclease ABC subu 99.8 7.8E-18 1.7E-22 206.1 22.4 202 36-251 1503-1796(1809)
407 COG0178 UvrA Excinuclease ATPa 99.8 7.1E-18 1.5E-22 188.2 19.7 128 110-251 783-919 (935)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 1.9E-18 4.1E-23 165.4 12.1 75 161-237 77-155 (162)
409 KOG0064 Peroxisomal long-chain 99.8 1.3E-18 2.8E-23 185.2 11.0 184 11-223 481-671 (728)
410 PRK00349 uvrA excinuclease ABC 99.7 2.4E-17 5.3E-22 194.2 15.3 135 108-250 434-584 (943)
411 cd03243 ABC_MutS_homologs The 99.7 1.9E-17 4E-22 164.3 11.2 155 41-249 21-177 (202)
412 TIGR00630 uvra excinuclease AB 99.7 8.1E-17 1.7E-21 189.4 16.5 135 108-250 432-582 (924)
413 cd03242 ABC_RecF RecF is a rec 99.7 1.9E-16 4.2E-21 164.1 16.7 77 159-240 181-269 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 7.2E-17 1.6E-21 160.0 8.9 137 35-222 15-152 (204)
415 KOG0066 eIF2-interacting prote 99.7 1.8E-17 3.8E-22 172.8 2.5 212 11-247 264-495 (807)
416 cd03284 ABC_MutS1 MutS1 homolo 99.6 7.7E-16 1.7E-20 154.1 10.6 157 36-250 18-180 (216)
417 TIGR02858 spore_III_AA stage I 99.6 1E-15 2.2E-20 157.6 11.2 140 50-249 112-267 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.6 1.2E-14 2.7E-19 151.9 12.6 178 34-235 347-530 (592)
419 TIGR01247 drrB daunorubicin re 99.5 1.1E-12 2.3E-17 133.3 23.3 225 383-635 1-234 (236)
420 PRK00064 recF recombination pr 99.5 4.5E-13 9.8E-18 144.4 18.8 78 159-240 271-359 (361)
421 smart00534 MUTSac ATPase domai 99.5 1.8E-14 3.9E-19 140.9 6.6 81 160-243 60-142 (185)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.7E-14 3.7E-19 144.8 3.8 88 135-236 121-212 (220)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.5 3.8E-13 8.2E-18 134.4 12.1 129 38-222 18-155 (213)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 1.3E-13 2.8E-18 121.3 6.0 73 36-119 2-77 (107)
425 TIGR01291 nodJ ABC-2 type tran 99.4 7.6E-11 1.6E-15 121.1 26.5 233 377-638 7-248 (253)
426 TIGR00025 Mtu_efflux ABC trans 99.4 5.1E-11 1.1E-15 120.7 24.7 220 389-638 2-229 (232)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 5.4E-12 1.2E-16 125.5 17.2 147 464-638 57-204 (208)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.5E-12 3.3E-17 130.5 11.7 133 36-222 18-155 (222)
429 TIGR01069 mutS2 MutS2 family p 99.4 5.7E-13 1.2E-17 155.5 9.0 129 42-222 314-446 (771)
430 KOG0063 RNAse L inhibitor, ABC 99.4 1.2E-12 2.5E-17 137.3 9.6 166 47-237 98-288 (592)
431 PRK07721 fliI flagellum-specif 99.3 1.9E-11 4.1E-16 133.8 17.2 176 35-249 145-341 (438)
432 PTZ00132 GTP-binding nuclear p 99.3 1.5E-12 3.3E-17 130.2 7.3 45 165-209 156-205 (215)
433 TIGR03861 phenyl_ABC_PedC alco 99.3 1.5E-09 3.3E-14 111.4 26.8 200 375-579 2-219 (253)
434 TIGR00634 recN DNA repair prot 99.3 8E-12 1.7E-16 142.5 9.8 77 160-239 439-519 (563)
435 PRK10869 recombination and rep 99.2 2E-11 4.4E-16 138.2 10.6 77 160-239 429-509 (553)
436 PRK00409 recombination and DNA 99.2 9E-12 2E-16 145.9 7.5 81 160-243 389-470 (782)
437 cd01128 rho_factor Transcripti 99.2 5.9E-12 1.3E-16 128.3 4.8 179 44-240 11-211 (249)
438 TIGR00618 sbcc exonuclease Sbc 99.2 2.6E-11 5.7E-16 147.7 11.2 81 157-238 946-1036(1042)
439 PRK08533 flagellar accessory p 99.2 8.2E-11 1.8E-15 119.0 12.9 151 44-236 19-184 (230)
440 PHA02562 46 endonuclease subun 99.2 2E-11 4.3E-16 139.6 9.1 79 158-240 465-555 (562)
441 COG0178 UvrA Excinuclease ATPa 99.2 1.2E-10 2.6E-15 131.1 14.5 138 108-251 426-577 (935)
442 PRK15066 inner membrane transp 99.2 1.6E-08 3.5E-13 104.1 28.9 240 374-640 7-252 (257)
443 PF13304 AAA_21: AAA domain; P 99.2 1.9E-11 4E-16 123.1 6.7 64 159-222 234-300 (303)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.2 6.4E-11 1.4E-15 118.5 10.3 134 36-222 17-154 (218)
445 cd01124 KaiC KaiC is a circadi 99.2 2.5E-10 5.4E-15 111.2 13.0 80 158-237 68-164 (187)
446 TIGR02788 VirB11 P-type DNA tr 99.2 1.3E-10 2.9E-15 122.7 10.5 142 42-250 137-280 (308)
447 PRK13695 putative NTPase; Prov 99.1 3.9E-11 8.4E-16 116.1 5.0 78 161-244 78-157 (174)
448 PRK13830 conjugal transfer pro 99.1 8.2E-10 1.8E-14 130.8 16.6 70 177-246 650-728 (818)
449 cd01120 RecA-like_NTPases RecA 99.1 2E-10 4.2E-15 108.4 8.8 63 162-224 68-140 (165)
450 COG3910 Predicted ATPase [Gene 99.1 1.7E-09 3.6E-14 102.8 13.0 67 155-222 123-189 (233)
451 PRK03918 chromosome segregatio 99.1 3.6E-10 7.7E-15 136.1 10.1 79 157-237 784-868 (880)
452 PRK10246 exonuclease subunit S 99.0 6.8E-10 1.5E-14 134.9 11.3 80 157-237 945-1032(1047)
453 PRK06793 fliI flagellum-specif 99.0 7E-10 1.5E-14 120.7 10.0 156 36-246 144-306 (432)
454 PRK01156 chromosome segregatio 98.9 2.7E-09 5.8E-14 128.7 10.9 77 158-236 798-883 (895)
455 PRK06067 flagellar accessory p 98.9 6.1E-09 1.3E-13 105.7 11.5 163 36-236 11-186 (234)
456 COG0842 ABC-type multidrug tra 98.9 1.7E-07 3.6E-12 96.5 21.8 165 453-643 118-285 (286)
457 cd01131 PilT Pilus retraction 98.9 1.3E-08 2.7E-13 100.8 10.8 57 171-236 66-122 (198)
458 TIGR00606 rad50 rad50. This fa 98.9 4.3E-09 9.3E-14 131.1 9.1 69 160-229 1198-1277(1311)
459 cd01125 repA Hexameric Replica 98.8 2.1E-08 4.5E-13 102.2 11.7 136 49-222 1-160 (239)
460 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.6E-09 5.6E-14 116.1 5.1 51 36-90 19-70 (504)
461 TIGR02168 SMC_prok_B chromosom 98.8 4.3E-09 9.3E-14 130.3 7.8 77 157-236 1085-1165(1179)
462 PRK06995 flhF flagellar biosyn 98.8 1.5E-08 3.3E-13 111.9 10.6 151 37-219 244-400 (484)
463 smart00382 AAA ATPases associa 98.7 3.2E-07 7E-12 83.2 15.3 118 48-219 1-124 (148)
464 PRK02224 chromosome segregatio 98.7 2.2E-08 4.8E-13 120.6 9.6 77 159-237 779-868 (880)
465 TIGR02169 SMC_prok_A chromosom 98.7 2E-08 4.4E-13 124.4 8.7 77 158-237 1071-1151(1164)
466 PRK13891 conjugal transfer pro 98.7 2.6E-07 5.7E-12 110.2 15.6 52 172-223 680-732 (852)
467 cd01130 VirB11-like_ATPase Typ 98.7 4.1E-08 8.9E-13 96.1 6.8 83 38-122 14-98 (186)
468 TIGR01026 fliI_yscN ATPase Fli 98.6 6.2E-08 1.3E-12 106.4 8.3 179 35-252 150-349 (440)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.6 8.2E-09 1.8E-13 104.3 1.2 48 37-87 7-57 (229)
470 TIGR02655 circ_KaiC circadian 98.6 1.3E-08 2.9E-13 114.0 2.5 168 36-236 7-190 (484)
471 TIGR01248 drrC daunorubicin re 98.6 1.1E-06 2.5E-11 83.1 14.3 127 449-578 15-146 (152)
472 TIGR01420 pilT_fam pilus retra 98.6 2.9E-07 6.4E-12 98.8 10.6 124 46-235 119-242 (343)
473 PRK07196 fliI flagellum-specif 98.5 1.1E-07 2.3E-12 103.8 7.1 173 34-244 141-334 (434)
474 TIGR00611 recf recF protein. A 98.5 1.2E-07 2.6E-12 102.4 7.2 60 160-222 274-342 (365)
475 PRK06002 fliI flagellum-specif 98.5 2.3E-07 4.9E-12 101.4 8.4 184 11-244 139-344 (450)
476 PRK14079 recF recombination pr 98.5 2.7E-07 6E-12 99.2 7.8 77 160-244 262-347 (349)
477 COG0419 SbcC ATPase involved i 98.5 4.3E-07 9.3E-12 109.6 10.2 78 158-237 812-897 (908)
478 PRK13898 type IV secretion sys 98.5 4E-06 8.7E-11 99.9 18.0 49 175-223 638-687 (800)
479 cd02023 UMPK Uridine monophosp 98.4 3.1E-07 6.6E-12 90.7 5.3 113 51-194 1-113 (198)
480 COG1682 TagG ABC-type polysacc 98.3 0.00017 3.7E-09 74.3 24.0 202 373-584 16-226 (263)
481 PRK05399 DNA mismatch repair p 98.3 1.2E-06 2.5E-11 104.5 9.0 138 36-231 595-738 (854)
482 PRK09825 idnK D-gluconate kina 98.3 3.3E-07 7.2E-12 88.9 3.6 66 48-119 2-69 (176)
483 PLN03210 Resistant to P. syrin 98.3 1.9E-06 4.2E-11 106.5 10.1 45 41-86 199-243 (1153)
484 TIGR03518 ABC_perm_GldF glidin 98.3 0.00024 5.1E-09 72.5 23.7 183 378-573 2-206 (240)
485 PRK13873 conjugal transfer ATP 98.3 2.1E-05 4.5E-10 94.0 17.6 47 177-223 633-680 (811)
486 PRK01889 GTPase RsgA; Reviewed 98.2 1E-06 2.2E-11 94.9 5.4 107 39-152 185-291 (356)
487 TIGR02680 conserved hypothetic 98.2 1.6E-06 3.5E-11 108.0 7.4 60 158-220 1244-1315(1353)
488 cd01122 GP4d_helicase GP4d_hel 98.2 8.4E-06 1.8E-10 84.5 11.1 39 35-73 16-54 (271)
489 PF13555 AAA_29: P-loop contai 98.2 2.3E-06 5E-11 67.7 4.4 38 38-75 11-49 (62)
490 PRK06315 type III secretion sy 98.2 4.4E-06 9.6E-11 91.6 8.1 110 35-147 151-277 (442)
491 TIGR00416 sms DNA repair prote 98.1 5.8E-06 1.3E-10 91.8 8.4 62 178-239 169-247 (454)
492 TIGR00767 rho transcription te 98.1 7.1E-06 1.5E-10 88.2 7.6 56 8-74 127-193 (415)
493 PRK09270 nucleoside triphospha 98.0 5E-06 1.1E-10 84.1 5.5 75 46-124 30-108 (229)
494 cd00009 AAA The AAA+ (ATPases 98.0 1.4E-05 3E-10 73.2 7.9 54 168-222 73-131 (151)
495 PRK00454 engB GTP-binding prot 98.0 1.9E-06 4.2E-11 84.3 2.1 67 136-210 126-195 (196)
496 TIGR03880 KaiC_arch_3 KaiC dom 98.0 2E-05 4.3E-10 79.3 9.3 58 179-236 107-177 (224)
497 PRK10078 ribose 1,5-bisphospho 98.0 5.8E-06 1.3E-10 80.9 5.1 37 49-90 2-38 (186)
498 PF13558 SbcCD_C: Putative exo 98.0 1.2E-05 2.5E-10 69.2 6.3 48 159-206 30-90 (90)
499 PF00488 MutS_V: MutS domain V 98.0 0.00017 3.6E-09 73.3 15.7 46 177-222 120-167 (235)
500 cd01876 YihA_EngB The YihA (En 98.0 9.2E-06 2E-10 76.4 5.8 65 135-207 100-169 (170)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-110 Score=944.78 Aligned_cols=587 Identities=39% Similarity=0.657 Sum_probs=513.7
Q ss_pred CCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEE
Q 039035 5 PVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVT 83 (646)
Q Consensus 5 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~ 83 (646)
+...+..++|+|++++.+++.. ..+++|+|||++++|||++|||||||||||||||+|+|+...+ .++|+|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~il 91 (613)
T KOG0061|consen 19 PYLEPVKLSFRNLTLSSKEKSK-------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEIL 91 (613)
T ss_pred cccccceeEEEEEEEEecCCCC-------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEE
Confidence 3444458999999998876531 3578999999999999999999999999999999999999874 6789999
Q ss_pred ECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 84 LDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 84 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
+||++.+.+.+++.+|||.|||.++|+|||+|+|.|++.+|++. .++++++++|+++++++||.+|+|+.+|+...|++
T Consensus 92 vNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgi 171 (613)
T KOG0061|consen 92 LNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGL 171 (613)
T ss_pred ECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcc
Confidence 99988887788999999999999999999999999999999987 68899999999999999999999999999888999
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|
T Consensus 172 SGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 172 SGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred ccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcChhhHHHHHHhcCCCCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCcC
Q 039035 243 QGPPKEVTLHVNRLGRKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNIG 322 (646)
Q Consensus 243 ~g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (646)
+|+++++.+||++.|++||++.||+||++|+++..+..+...+............. .. .
T Consensus 252 ~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~~-----------~-- 310 (613)
T KOG0061|consen 252 SGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQ--------TD-----------N-- 310 (613)
T ss_pred ecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccc--------cc-----------h--
Confidence 99999999999999999999999999999998853111111110000000000000 00 0
Q ss_pred ccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 039035 323 KRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMVL 402 (646)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~ 402 (646)
. .+... ........ .........++|+.|+++|++|.+++.+|||.++..|+++.
T Consensus 311 --~---~~~~~---~~~~~~~~-----------------~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~ 365 (613)
T KOG0061|consen 311 --L---KKTLE---ALEKSLST-----------------SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQS 365 (613)
T ss_pred --h---hhhHH---HHhhhccc-----------------ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHH
Confidence 0 00000 00000000 00001111679999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Q 039035 403 TVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFF-SSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITYLPFL 481 (646)
Q Consensus 403 i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~ 481 (646)
+.+|+++|++||+.+++..+++++.|++||.+.++.+ .+.++++.|++||++|.||+.+|+|+.++||+|++++++|+.
T Consensus 366 ~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~ 445 (613)
T KOG0061|consen 366 LVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFL 445 (613)
T ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999998888765 567789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCcccc
Q 039035 482 LLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIP 558 (646)
Q Consensus 482 ~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip 558 (646)
++.+++|.+|+|||+|+++ +|++|++++++..++++++|+++++++||...|+.+++++++++++|+||+++.++||
T Consensus 446 ~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip 525 (613)
T KOG0061|consen 446 LVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIP 525 (613)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCccccc
Confidence 9999999999999999986 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHhhCC--CCCccCCCCCcccchHHHHHhcCCcccCCChHHHHHHHHHHHHHHHHHHHHH
Q 039035 559 SYWGWMNKISTITYPFEGLLMNQFQT--NEPFATDRSGNIVTGFDILDALHIKTEGWGKWEKVFILLGWAVFYRILFYII 636 (646)
Q Consensus 559 ~~~~W~~yiS~~~Y~~e~l~~nef~~--~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~ 636 (646)
.||+|++|+||++|++||+++|||.+ .+|....+..|..+|+++++.+++. ..+.|.|+.+++++.++||+++|++
T Consensus 526 ~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~l~~l~~~~~~~~il~y~~ 603 (613)
T KOG0061|consen 526 KYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFE--DSSFWLDLLVLLAFIVFFRVLGYLA 603 (613)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCc--ccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999995 4564322356778999999999997 5799999999999999999999999
Q ss_pred HHhhccccCC
Q 039035 637 LRFFSKNQRS 646 (646)
Q Consensus 637 L~~~~~~~R~ 646 (646)
|+++.|++|+
T Consensus 604 L~~~~~~~~~ 613 (613)
T KOG0061|consen 604 LRFRVKRKRR 613 (613)
T ss_pred HHhhccccCC
Confidence 9999999875
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2e-105 Score=916.24 Aligned_cols=593 Identities=29% Similarity=0.489 Sum_probs=501.9
Q ss_pred CCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEEC
Q 039035 7 DFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLD 85 (646)
Q Consensus 7 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~ 85 (646)
..+..+++.++. +++...- ..+++++.+|+|+|++++|||+++|+|||||||||||++|+|+.+++ ..+|+|.+|
T Consensus 13 ~~~~~~~~~~~~-~~~~~~~---~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~ 88 (617)
T TIGR00955 13 RVAQDGSWKQLV-SRLRGCF---CRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLN 88 (617)
T ss_pred cccccchhhhhh-hhccccc---ccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEEC
Confidence 333477777777 5543211 11234578999999999999999999999999999999999998775 346999999
Q ss_pred CeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCC-CCCCC
Q 039035 86 GKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEG-TRGVS 163 (646)
Q Consensus 86 g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LS 163 (646)
|.+++...+++.+|||+|+|.+++.+||+|||.|++.++.+. .++++++++++++++.+||.+++|+.+|++. .++||
T Consensus 89 g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS 168 (617)
T TIGR00955 89 GMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS 168 (617)
T ss_pred CEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC
Confidence 999875567888999999999999999999999999888754 5667778899999999999999999999853 68999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|||+.++.++||++++|++|+++|+
T Consensus 169 gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 99999999999999999999999999999999999999999999988999999999998889999999999999999999
Q ss_pred cChhhHHHHHHhcCCCCCCCCChHHHHHHhhhhccccchh-HHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCcC
Q 039035 244 GPPKEVTLHVNRLGRKVPKGENSIEYLIDVIQEYDQSEFG-VEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNIG 322 (646)
Q Consensus 244 g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (646)
|+++++.+||+++|++||++.||+||++++++..+..+.. .+...+..+.. ..... ..+
T Consensus 249 G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~-----~~~-------------- 308 (617)
T TIGR00955 249 GSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSF-AVSDI-----GRD-------------- 308 (617)
T ss_pred CCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHH-hcchh-----hHH--------------
Confidence 9999999999999999999999999999998753322111 11111111100 00000 000
Q ss_pred ccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 039035 323 KRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMVL 402 (646)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~ 402 (646)
..+.... ...+. ... ... .......++..+|++|+++|++|++++.+|||.++..|+++.
T Consensus 309 -----~~~~~~~--~~~~~--~~~---------~~~--~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~ 368 (617)
T TIGR00955 309 -----MLVNTNL--WSGKA--GGL---------VKD--SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQT 368 (617)
T ss_pred -----HHHHhhh--hhccc--ccc---------ccc--cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 0000000 00000 000 000 000012356789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Q 039035 403 TVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFFS-SNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITYLPFL 481 (646)
Q Consensus 403 i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~-~~~~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~ 481 (646)
+++|+++|++||+++.++++++++.|++|+++.++.|. ++..++.|+.||++|+||+.+|+|++++|++|++++|+|+.
T Consensus 369 i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~ 448 (617)
T TIGR00955 369 MMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLF 448 (617)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988777664 66889999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCcccc
Q 039035 482 LLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIP 558 (646)
Q Consensus 482 ~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip 558 (646)
++.+++|++|+|||+|+++ +|+.|+++++++.+++.++|+++++++|+..+|+.+++++++++++|+||++++++||
T Consensus 449 ~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip 528 (617)
T TIGR00955 449 IILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIP 528 (617)
T ss_pred HHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhcc
Confidence 9999999999999999986 7888999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHhhCCCC---CccC-CCCCcccchHHHHHhcCCcccCCChHHHHHHHHHHHHHHHHHHH
Q 039035 559 SYWGWMNKISTITYPFEGLLMNQFQTNE---PFAT-DRSGNIVTGFDILDALHIKTEGWGKWEKVFILLGWAVFYRILFY 634 (646)
Q Consensus 559 ~~~~W~~yiS~~~Y~~e~l~~nef~~~~---~~~~-~~~~c~~~g~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~~~~ 634 (646)
+||+|++|+||++|++||++.|||.+.. |... .+..|+.+|+++|+.+|++ .++.|.|+++|+++.++|++++|
T Consensus 529 ~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~--~~~~~~~~~il~~~~~~~~~l~~ 606 (617)
T TIGR00955 529 VYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFR--NADLYLDLIGLVILIFFFRLLAY 606 (617)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCC--cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865 4321 2345999999999999997 46889999999999999999999
Q ss_pred HHHHhhccccC
Q 039035 635 IILRFFSKNQR 645 (646)
Q Consensus 635 ~~L~~~~~~~R 645 (646)
++|+++.+++|
T Consensus 607 ~~L~~~~~~~~ 617 (617)
T TIGR00955 607 FALRIRIRRKR 617 (617)
T ss_pred HHHHHHhhccC
Confidence 99999888876
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.1e-104 Score=905.88 Aligned_cols=581 Identities=29% Similarity=0.456 Sum_probs=478.0
Q ss_pred ceEEEEeEEEEEeccc-ccc--------c--------cccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 10 GGLGFSNLTYTVTKKK-KIE--------G--------TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~-~~~--------~--------~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
..+++.|++|+++... ... . .+..+++.+|+|||+++++||++||+||||||||||||+|+|+
T Consensus 38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 38 ITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred eEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999986542 100 0 0112356799999999999999999999999999999999999
Q ss_pred CCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCcccc
Q 039035 73 IASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRN 151 (646)
Q Consensus 73 ~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~ 151 (646)
.+++..+|+|.+||+++.. ..++.+|||+|++.+++.+||+||+.|++.++.+. .++++++++++++++.+||++++|
T Consensus 118 ~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 118 IQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 9876446999999998753 34567999999999999999999999988776543 456667788999999999999999
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCe
Q 039035 152 THIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 152 ~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 231 (646)
+.+|+..+++|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++++|+|||+++|||+.++.++||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999999999999999999999999999999999999999999999999999999988999999999998778899999
Q ss_pred EEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhhhccccch----h----HHHHHHHHHcCCCCCCCCCc
Q 039035 232 LIILARGQLMFQGPPKEVTLHVNRLGRKVPKGENSIEYLIDVIQEYDQSEF----G----VEVMAEFARTGLRPPPLSND 303 (646)
Q Consensus 232 v~~L~~G~iv~~g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~ 303 (646)
+++|++|++++.|+++++.+||+++|++||++.|||||++|+++.....+. . .+.+.+.+++. .. +
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~ 350 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL-----LA-P 350 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh-----cc-H
Confidence 999999999999999999999999999999999999999999864321100 0 00000000000 00 0
Q ss_pred ccchhhhcccccCCCCCcCccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHH
Q 039035 304 EGNSAMETSVSVGGGTNIGKRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRR 383 (646)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R 383 (646)
+... ..... ............ ... .........+.++|++|+++|++|
T Consensus 351 ~~~~-----------------------~~~~~-~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~s~~~Q~~~L~~R 398 (659)
T PLN03211 351 KVKA-----------------------AIEMS-HFPQANARFVGS-------AST-KEHRSSDRISISTWFNQFSILLQR 398 (659)
T ss_pred HHHH-----------------------HHhhh-hhhcchhhhhhc-------ccc-cccccCCCccCCCHHHHHHHHHHH
Confidence 0000 00000 000000000000 000 000001123557899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhHHHHHHhcCC
Q 039035 384 NFKNIRRTPELFLSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFF-SSNDAVPAFIQERFIFIRETSHN 462 (646)
Q Consensus 384 ~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~v~~~~~er~v~~rE~~~~ 462 (646)
++++ +||+.++..|+++.+++|+++|++||+++ ..++++|.|++||++.+..+ +++++++.|+.||+||+||+.+|
T Consensus 399 ~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~ 475 (659)
T PLN03211 399 SLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASG 475 (659)
T ss_pred HHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCC
Confidence 9999 89999999999999999999999999985 67899999999998777554 67899999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 039035 463 AYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIA 539 (646)
Q Consensus 463 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~ 539 (646)
+|++++|++|++++|+|+.++.+++|++|+|||+||++ +|++|+++++++.++++++|+++++++||..+|+.++|+
T Consensus 476 ~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~ 555 (659)
T PLN03211 476 MYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTV 555 (659)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCC-------CccC---CCCCcccchHHHHHhcCCc
Q 039035 540 FTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNE-------PFAT---DRSGNIVTGFDILDALHIK 609 (646)
Q Consensus 540 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~-------~~~~---~~~~c~~~g~~~L~~~~~~ 609 (646)
+++++++|+||+++ +||+||+|++|+||++|+|||++.|||.+.+ |... ....|.+.++.+++
T Consensus 556 ~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~----- 628 (659)
T PLN03211 556 TMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG----- 628 (659)
T ss_pred HHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhc-----
Confidence 99999999999997 7999999999999999999999999998643 4211 12346555544443
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039035 610 TEGWGKWEKVFILLGWAVFYRILFYIILRFFS 641 (646)
Q Consensus 610 ~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 641 (646)
+.+.|.|+++|++++++||+++|++|++.+
T Consensus 629 --~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 629 --QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 246899999999999999999999998754
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.4e-101 Score=940.57 Aligned_cols=586 Identities=26% Similarity=0.453 Sum_probs=494.0
Q ss_pred eEEEEeEEEEEecccccc-ccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIE-GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~-~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
.++|+||+|+++.+.... .....+++++|+|||++++|||++|||||||||||||||+|+|+.+++..+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 799999999997543211 1112235679999999999999999999999999999999999987655679999999887
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
....+++.+|||+|+|.+++.+||+|||.|++.++.+. .+.+++.++++++++.+||.+++|+.+|+..+++|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 64456778999999999999999999999998877643 45666778899999999999999999998778899999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-CeEEEEcCh-
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR-GQLMFQGPP- 246 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~g~~- 246 (646)
||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+|++
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 999999999999999999999999999999999999999999999999999998778899999999996 899999996
Q ss_pred ---hhHHHHHHhc-CC-CCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCc
Q 039035 247 ---KEVTLHVNRL-GR-KVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNI 321 (646)
Q Consensus 247 ---~~~~~~f~~~-g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (646)
+++.+||+++ |+ +||++.|||||++|+++.........+ +.+.+++. +
T Consensus 1107 ~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d-~~~~~~~s-------------------------~- 1159 (1470)
T PLN03140 1107 RNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGID-FAEHYKSS-------------------------S- 1159 (1470)
T ss_pred cccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccch-HHHHHhcc-------------------------H-
Confidence 5799999998 66 499999999999999764321111111 11111110 0
Q ss_pred CccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 039035 322 GKRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMV 401 (646)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~ 401 (646)
.+++..+. .+. ...+.. . ........+|+.++++|+++|++|+++++||||.++.+|+++
T Consensus 1160 --~~~~~~~~------~~~-~~~~~~---------~--~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~ 1219 (1470)
T PLN03140 1160 --LYQRNKAL------VKE-LSTPPP---------G--ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFF 1219 (1470)
T ss_pred --HHHHHHHH------HHH-hccCCC---------C--ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence 00000000 000 000000 0 000112346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHH
Q 039035 402 LTVMGFMMATMFANPKKDS---QGITNRLCFFVFTVCIFFF-SSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITY 477 (646)
Q Consensus 402 ~i~~~ll~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~~-~~~~~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~ 477 (646)
++++|+++|++||+++++. ++++++.|++|+++.+..+ .+.+.+|.|..||+||+||+++|+|++++|++|++++|
T Consensus 1220 ~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~e 1299 (1470)
T PLN03140 1220 TLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCE 1299 (1470)
T ss_pred HHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 9999999999999998764 6788899999988877766 45677899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCC
Q 039035 478 LPFLLLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTS 554 (646)
Q Consensus 478 lp~~~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~ 554 (646)
+|+.++.+++|++|+|||+||++ .|++|+++++++.++++++|+++++++||.++|..++++++.++++|+||++|+
T Consensus 1300 iP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~ 1379 (1470)
T PLN03140 1300 IPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPR 1379 (1470)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccCh
Confidence 99999999999999999999984 789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhchhHHHHHHHHHHhhCCCCCcc-CCCCCcccchHHH-HHhcCCcccCCChHHHHHHHHHHHHHHHHH
Q 039035 555 NDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFA-TDRSGNIVTGFDI-LDALHIKTEGWGKWEKVFILLGWAVFYRIL 632 (646)
Q Consensus 555 ~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~-~~~~~c~~~g~~~-L~~~~~~~~~~~~w~~~~il~~~~~~~~~~ 632 (646)
++||.||+|++|+||++|+++|++.|||++.++.. +.......+++++ ++.||++ ++++|++++++++|+++|+++
T Consensus 1380 ~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~il~~~~~~f~~~ 1457 (1470)
T PLN03140 1380 PKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYD--PDFMGPVAAVLVGFTVFFAFI 1457 (1470)
T ss_pred HHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcC--cccccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999876421 1110111356676 5789997 678999999999999999999
Q ss_pred HHHHHHhhccccC
Q 039035 633 FYIILRFFSKNQR 645 (646)
Q Consensus 633 ~~~~L~~~~~~~R 645 (646)
+++++++.+++||
T Consensus 1458 ~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1458 FAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHhhcccC
Confidence 9999999999998
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.8e-100 Score=934.54 Aligned_cols=598 Identities=23% Similarity=0.379 Sum_probs=492.5
Q ss_pred ceEEEEeEEEEEeccccc---c-----------------ccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHH
Q 039035 10 GGLGFSNLTYTVTKKKKI---E-----------------GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGL 69 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~---~-----------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L 69 (646)
..+.|+||+.+..+.... . ...+++++++|+|||+.+++||+++|+||||||||||||+|
T Consensus 28 ~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~L 107 (1394)
T TIGR00956 28 LGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTI 107 (1394)
T ss_pred eeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 379999999876332110 0 01123457799999999999999999999999999999999
Q ss_pred HcCCCC--CcceeEEEECCeeCCc--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-----CCHHHHHHH-HHH
Q 039035 70 AGRIAS--GSLKGKVTLDGKETSP--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-----ISWSDKKQR-VEN 139 (646)
Q Consensus 70 ~G~~~~--~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-----~~~~~~~~~-v~~ 139 (646)
+|+.++ ...+|+|.+||++++. ...++.++||+|+|.+++.+||+|||.|+++++.+. .++++..++ +++
T Consensus 108 aG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1394)
T TIGR00956 108 ASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV 187 (1394)
T ss_pred hCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Confidence 999732 1135999999998742 235667999999999999999999999998876532 334444334 577
Q ss_pred HHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEe
Q 039035 140 LVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTI 218 (646)
Q Consensus 140 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~ 218 (646)
+++.+||++++|+++|++.+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++ |+|||+++
T Consensus 188 ~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~ 267 (1394)
T TIGR00956 188 YMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAI 267 (1394)
T ss_pred HHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 99999999
Q ss_pred cCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCC
Q 039035 219 HQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLGRKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPP 298 (646)
Q Consensus 219 H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (646)
|||+.++.++||++++|++|+++++|+++++.+||+++|++||++.||+||++++++..++... .......
T Consensus 268 Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~---------~~~e~~~ 338 (1394)
T TIGR00956 268 YQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIK---------PGYEKKV 338 (1394)
T ss_pred cCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcc---------ccccccC
Confidence 9998889999999999999999999999999999999999999999999999999764321100 0000000
Q ss_pred CCCCcccchhhhcccccCCCCCcCccccchhhHhhhh----------hhhhcccCCCCCCCCCCCccccccchhhccCCC
Q 039035 299 PLSNDEGNSAMETSVSVGGGTNIGKRLPLHASIIAAS----------KEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPK 368 (646)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (646)
+...++....++++ + .+++....++.. +.+++.... .........+.
T Consensus 339 ~~~~~~~~~~~~~s-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 395 (1394)
T TIGR00956 339 PRTPQEFETYWRNS-------P---EYAQLMKEIDEYLDRCSESDTKEAYRESHVA-------------KQSKRTRPSSP 395 (1394)
T ss_pred CCCHHHHHHHHHcC-------H---HHHHHHHHHHHHhhhccchhhHHHHHHHHHh-------------hhcccccCCCC
Confidence 01111111111110 0 000000000000 000000000 00000111345
Q ss_pred ccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 039035 369 FANSFLSETWILMRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFFSSNDAVPAF 448 (646)
Q Consensus 369 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~~v~~~ 448 (646)
|..|+++|+++|++|++++.+|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+..++++..++.+
T Consensus 396 ~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~ 475 (1394)
T TIGR00956 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASM 475 (1394)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999998888878888999
Q ss_pred HHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039035 449 IQERFIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSS 525 (646)
Q Consensus 449 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~ 525 (646)
+.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++ +||+|+++++++.+++.++++++++
T Consensus 476 ~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a 555 (1394)
T TIGR00956 476 YEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGA 555 (1394)
T ss_pred HhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 8999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCC--Ccc--C----------C
Q 039035 526 VVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNE--PFA--T----------D 591 (646)
Q Consensus 526 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~--~~~--~----------~ 591 (646)
++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++|+|||++.|||++.. |.. + .
T Consensus 556 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~ 635 (1394)
T TIGR00956 556 VTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVT 635 (1394)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999998865 421 0 1
Q ss_pred CCCc----------ccchHHHHH-hcCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039035 592 RSGN----------IVTGFDILD-ALHIKTEGWGKWEKVFILLGWAVFYRILFYIILRFFS 641 (646)
Q Consensus 592 ~~~c----------~~~g~~~L~-~~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 641 (646)
...| .++|+++|+ .||++ +++.|+|++||++|+++|++++++++.+.+
T Consensus 636 ~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 636 NKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2245 458999998 57776 679999999999999999999999999876
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.9e-99 Score=921.71 Aligned_cols=577 Identities=25% Similarity=0.423 Sum_probs=486.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-ceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-LKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~g~~~ 89 (646)
.++++||+++++.++ +++.+|+|||++++|||++||+||||||||||||+|+|+.+++. .+|+|.+||+++
T Consensus 759 ~l~~~nl~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~ 830 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKK--------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL 830 (1394)
T ss_pred eEEEEeeEEEecCCC--------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC
Confidence 589999999986431 24579999999999999999999999999999999999987421 249999999998
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
.. .+++.+|||+|+|.+++.+||+|||.|++.++.+. .+++++.++++++++.+||.+++|+.+|+.. .+|||||||
T Consensus 831 ~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrq 908 (1394)
T TIGR00956 831 DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRK 908 (1394)
T ss_pred Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhh
Confidence 53 56788999999999999999999999999887653 5566777899999999999999999998543 389999999
Q ss_pred HHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC-eEEEEcCh
Q 039035 169 RVSIGVDIIHGPP-LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG-QLMFQGPP 246 (646)
Q Consensus 169 Rv~ia~~L~~~P~-lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G-~iv~~g~~ 246 (646)
||+||++|+.+|+ +|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++++|++
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999997 999999999999999999999999999889999999999987777899999999997 99999997
Q ss_pred ----hhHHHHHHhcCC-CCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCc
Q 039035 247 ----KEVTLHVNRLGR-KVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNI 321 (646)
Q Consensus 247 ----~~~~~~f~~~g~-~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (646)
+++.+||++.|+ +||++.|||||++|+++........ +.+.+.++.. ..
T Consensus 989 ~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~-~~~~~~~~~s---------~~---------------- 1042 (1394)
T TIGR00956 989 GENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHAN-QDYHEVWRNS---------SE---------------- 1042 (1394)
T ss_pred ccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchh-ccHHHHHhcC---------HH----------------
Confidence 568999999996 9999999999999998743221111 1111111110 00
Q ss_pred CccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 039035 322 GKRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMV 401 (646)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~ 401 (646)
++...+.++ .... +.... +. .......+++++||++|+++|++|+++++||||.++.+|+++
T Consensus 1043 ---~~~~~~~~~---~~~~----~~~~~------~~--~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~ 1104 (1394)
T TIGR00956 1043 ---YQAVKNELD---RLEA----ELSKA------ED--DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFL 1104 (1394)
T ss_pred ---HHHHHHHHH---Hhhc----ccccC------cc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 000000000 0000 00000 00 000011246789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH-HHHhcCCCCChhHHHHHHHHHHHHH
Q 039035 402 LTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFFSSNDAVPAFIQERFIF-IRETSHNAYRASSYTIAGLITYLPF 480 (646)
Q Consensus 402 ~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~~v~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lp~ 480 (646)
++++|+++|++||+++++++++++++|++|+.+.+..+.+++.+|.|+.||.+| +||+++|+|++++|++|++++|+|+
T Consensus 1105 ~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~ 1184 (1394)
T TIGR00956 1105 TIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184 (1394)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887776666778899999999886 9999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCCch---H-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcc
Q 039035 481 LLLQSAVYAGIVWKALGLRK---S-------FLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGF 550 (646)
Q Consensus 481 ~~~~~~if~~i~Y~~~gl~~---~-------f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf 550 (646)
.++.+++|++|+|||+||+. . |++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||
T Consensus 1185 ~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~ 1264 (1394)
T TIGR00956 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGV 1264 (1394)
T ss_pred HHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999974 2 8999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccccchhhhhhchhHHHHHHHHHHhhCCCC--CccC--------------------------------CC---C
Q 039035 551 FVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNE--PFAT--------------------------------DR---S 593 (646)
Q Consensus 551 ~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~--~~~~--------------------------------~~---~ 593 (646)
++++++||.||+|++|+||++|+++|++.|||++.+ |... .. .
T Consensus 1265 ~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~ 1344 (1394)
T TIGR00956 1265 LAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCS 1344 (1394)
T ss_pred cCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCC
Confidence 999999999999999999999999999999999865 4220 01 1
Q ss_pred Cccc-chHHHHHhcCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039035 594 GNIV-TGFDILDALHIKTEGWGKWEKVFILLGWAVFYRILFYIILRFFSKNQ 644 (646)
Q Consensus 594 ~c~~-~g~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~~ 644 (646)
.|++ +|+++|+.+|++ .++.|+|++++++|++++ ++++++|+++.|.+
T Consensus 1345 yC~~~~~~~~l~~~~~~--~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1345 FCQYSYTNDFLEPISSK--YSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred cCCCCCHHHHHHHcCCc--ccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 3455 899999999997 678999999999999888 89999998875543
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=7.3e-99 Score=918.80 Aligned_cols=572 Identities=23% Similarity=0.416 Sum_probs=478.7
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 112 (646)
.+++||+|||+.++|||+++|+||||||||||||+|+|+++++ .++|+|.+||++++....++.++||+|+|.+++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4578999999999999999999999999999999999999875 345999999998754334678999999999999999
Q ss_pred HHHHHHHHHHccCCC--------CCHHHH------------------------HHHHHHHHHHcCCCccccccccCCCCC
Q 039035 113 VFETLMFAADFRLGP--------ISWSDK------------------------KQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 113 v~e~l~~~~~~~~~~--------~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|+|||.|+++++..+ .+++++ +..++++++.+||++++||.+|++.++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998775321 111111 123578999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999987 599999999999888999999999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCCC-CCCcccchhhhcccccCCC
Q 039035 240 LMFQGPPKEVTLHVNRLGRKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPP-LSNDEGNSAMETSVSVGGG 318 (646)
Q Consensus 240 iv~~g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 318 (646)
++|+|+++++.+||+++|++||++.|||||++++++..++.. ++.....+.. .+.++..++++..
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~~s------ 481 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ--------YWADRNKPYRYISVSEFAERFKSF------ 481 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh--------hhhccCCccccCCHHHHHHHHHhc------
Confidence 999999999999999999999999999999999987533211 1111101100 1111222222110
Q ss_pred CCcCccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHH
Q 039035 319 TNIGKRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSR 398 (646)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r 398 (646)
+. +++..+.++ ...+++.. .......++|..+++.|++.+++|++++++||+.+++.|
T Consensus 482 -~~---~~~~~~~~~--~~~~~~~~----------------~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r 539 (1470)
T PLN03140 482 -HV---GMQLENELS--VPFDKSQS----------------HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFK 539 (1470)
T ss_pred -HH---HHHHHHHHh--hhhhhhhc----------------ccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 00 000000000 00000000 000011245888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHhcCCCCChhHHHHHHHH
Q 039035 399 LMVLTVMGFMMATMFANPKKDS---QGITNRLCFFVFTVCIFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLI 475 (646)
Q Consensus 399 ~~~~i~~~ll~G~~f~~~~~~~---~~~~~~~g~~ff~~~~~~~~~~~~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l 475 (646)
+++.+++|+++|++||+++.++ .+.+.+.|.+||++.+.++++++.++.++.||+||+|||.+++|++++|++|+++
T Consensus 540 ~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l 619 (1470)
T PLN03140 540 TVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFL 619 (1470)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHH
Confidence 9999999999999999987443 3456778899998888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhcccc
Q 039035 476 TYLPFLLLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFV 552 (646)
Q Consensus 476 ~~lp~~~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i 552 (646)
+++|+.++.+++|++|+|||+||++ +||+|+++++++.+++.+++.+++++++++.+|+.+++++++++++|+||++
T Consensus 620 ~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i 699 (1470)
T PLN03140 620 LGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFIL 699 (1470)
T ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcccee
Confidence 9999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccC-CCCCcccchHHHHHhcCCcccCCChHHHHHHHHHHHHHHHH
Q 039035 553 TSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFAT-DRSGNIVTGFDILDALHIKTEGWGKWEKVFILLGWAVFYRI 631 (646)
Q Consensus 553 ~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~-~~~~c~~~g~~~L~~~~~~~~~~~~w~~~~il~~~~~~~~~ 631 (646)
+.++||+||+|++|+||++||+||++.|||.+..+... ..+.+...|+++|+.+|+..++.+.|+|+++|++|+++|++
T Consensus 700 ~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~ 779 (1470)
T PLN03140 700 PKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNV 779 (1470)
T ss_pred chHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987643110 01224568999999999986556789999999999999999
Q ss_pred HHHHHHHhhc
Q 039035 632 LFYIILRFFS 641 (646)
Q Consensus 632 ~~~~~L~~~~ 641 (646)
++|++|++.+
T Consensus 780 l~~l~L~~~~ 789 (1470)
T PLN03140 780 LFTLALTYLN 789 (1470)
T ss_pred HHHHHHHhcC
Confidence 9999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-97 Score=855.96 Aligned_cols=578 Identities=28% Similarity=0.464 Sum_probs=486.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
...|+|+.|+++.+ .+++++|+||++.++||.++||||+||||||||||+||||...+.++|+|++||.+.+
T Consensus 787 V~~w~dl~~~~~~q--------G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQ--------GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD 858 (1391)
T ss_pred eEEEEeCCcccccc--------ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence 45566666655432 2467899999999999999999999999999999999999988888999999999998
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
.+.++|.+|||.|+|.|.+.+||+|.|.|+|.+|++. ++.+++.+.|+++++.++|++++|..||+.. +|||.+||||
T Consensus 859 q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKr 937 (1391)
T KOG0065|consen 859 QETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKR 937 (1391)
T ss_pred hhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhce
Confidence 7789999999999999999999999999999999977 7888888999999999999999999999988 9999999999
Q ss_pred HHHHHHHHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-CeEEEEcChh
Q 039035 170 VSIGVDIIHGP-PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR-GQLMFQGPPK 247 (646)
Q Consensus 170 v~ia~~L~~~P-~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~g~~~ 247 (646)
++||.+|+.|| .||||||||||||++++..|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||.|+..
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999 899999999999999999999999999999999999999999999999999999997 6999999985
Q ss_pred h----HHHHHHhcC-CCCCCCCChHHHHHHhhhhccccchhHHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCcC
Q 039035 248 E----VTLHVNRLG-RKVPKGENSIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNIG 322 (646)
Q Consensus 248 ~----~~~~f~~~g-~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (646)
+ +.+||++.| .+||+..|||||++|+++...+.+...+ .++.+++.
T Consensus 1018 ~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D-~a~~w~~S---------------------------- 1068 (1391)
T KOG0065|consen 1018 ENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVD-FAEIWKNS---------------------------- 1068 (1391)
T ss_pred cccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCcc-HHHHHhcc----------------------------
Confidence 5 567999987 7999999999999999875433322221 22222221
Q ss_pred ccccchhhHhhhhhhhhcccCCCCCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 039035 323 KRLPLHASIIAASKEFDHSVRSPYNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMVL 402 (646)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~ 402 (646)
..+++.++.+++ ..+ .+ +. .......+.+|+.|++.|++.+++|++..+||+|.++.+|++..
T Consensus 1069 ~e~k~~~e~v~~---l~~---~~----------~~-~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~ 1131 (1391)
T KOG0065|consen 1069 EEYKRNKELVKE---LSQ---PP----------PG-FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALT 1131 (1391)
T ss_pred HHHHHHHHHHHH---Hhc---CC----------cc-CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 001111111111 100 00 00 01122335679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHH
Q 039035 403 TVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFFSSND-AVPAFIQERFIFIRETSHNAYRASSYTIAGLITYLPFL 481 (646)
Q Consensus 403 i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~~~~~-~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~ 481 (646)
++.|+++|+.||+.|++.+++||.+|++|+.+++......+ ..+.+..||.+++||+++|+||+.+|++|++++|+|+.
T Consensus 1132 i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~ 1211 (1391)
T KOG0065|consen 1132 IVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYN 1211 (1391)
T ss_pred HHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877766555 45666679999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCcccc
Q 039035 482 LLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIP 558 (646)
Q Consensus 482 ~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip 558 (646)
++++.+|.+++|+++|+.. +|++|++.+++..++.+++|+++.+++||.++|..+.+.+..++.+||||+++++.||
T Consensus 1212 l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP 1291 (1391)
T KOG0065|consen 1212 LLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIP 1291 (1391)
T ss_pred HHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccccccccccc
Confidence 9999999999999999986 7888999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhchhHHHHHHHHHHhhCCCC--CccCC----CCCcccc-hHHHHHhcC----CcccCCChHHHHHHHHHHHH
Q 039035 559 SYWGWMNKISTITYPFEGLLMNQFQTNE--PFATD----RSGNIVT-GFDILDALH----IKTEGWGKWEKVFILLGWAV 627 (646)
Q Consensus 559 ~~~~W~~yiS~~~Y~~e~l~~nef~~~~--~~~~~----~~~c~~~-g~~~L~~~~----~~~~~~~~w~~~~il~~~~~ 627 (646)
.||+|++|+||+.|-+++++..++++.+ |...+ +.+|..+ |+.+...+| +. ++..-....+..++.+
T Consensus 1292 ~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~--~n~~a~~~c~~c~y~v 1369 (1391)
T KOG0065|consen 1292 KFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYL--HNPLATTACVYCAYTV 1369 (1391)
T ss_pred ceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCccee--ccCcceeEEEEeeeeh
Confidence 9999999999999999999999999875 53211 1223333 444445566 43 2222233344456777
Q ss_pred HHHHHHHHHHHhhccccC
Q 039035 628 FYRILFYIILRFFSKNQR 645 (646)
Q Consensus 628 ~~~~~~~~~L~~~~~~~R 645 (646)
.+.+++.+.+++.++.||
T Consensus 1370 ~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1370 ADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 788888888888777665
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-89 Score=785.56 Aligned_cols=573 Identities=27% Similarity=0.454 Sum_probs=484.7
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 112 (646)
...++|+|+|+-++|||++.++||+||||||||++|+|.++.. ...|+|.+||.+.+...-++.++|++|+|.|+|.||
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 4467999999999999999999999999999999999987653 235899999998764333788999999999999999
Q ss_pred HHHHHHHHHHccCCC-----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 039035 113 VFETLMFAADFRLGP-----ISWSDKKQ-RVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLD 186 (646)
Q Consensus 113 v~e~l~~~~~~~~~~-----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLD 186 (646)
|+|+|.|+++++.++ .++.++.+ ..+.+++.+||++|+||+|||+..|++||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 999999999998762 33333332 678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCC
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVNRLGRKVPKGEN 265 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~f~~~g~~~p~~~~ 265 (646)
|+|+|||+.++.++++.|+++++ .+.|+++++|||+++++++||+|++|.+|+++|+||.+++.+||+++|+.||+..+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999997 48999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhccccchhHHHHHHHHHcCCCCCCCCCcccchhhhcccccCCCCCcCccccchhhHhhhhhhhhcccCCC
Q 039035 266 SIEYLIDVIQEYDQSEFGVEVMAEFARTGLRPPPLSNDEGNSAMETSVSVGGGTNIGKRLPLHASIIAASKEFDHSVRSP 345 (646)
Q Consensus 266 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (646)
+|||+.+++++.++..... .+....+..+..+..+.+... + .+.......+ ...++.
T Consensus 366 ~ADfLt~vts~k~~~~~~~-------~~~~~~~~~~~~ef~~~~~~s-------~---~~~~l~~~l~--~~~~~~---- 422 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWN-------KRSKPYPYTSVSEFAEYFLNS-------E---DYAKLKKELS--KPYDKS---- 422 (1391)
T ss_pred HHHHHHHhhcCcccccccc-------ccCCCcccCCHHHHHHHHhcc-------h---hhHHHHHHhc--chhhhh----
Confidence 9999999998433221110 001011111112222222110 0 0110000000 011111
Q ss_pred CCCCCCCCccccccchhhccCCCccCcHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHH
Q 039035 346 YNNSPRSPWRVARSTAAEHLGPKFANSFLSETWILMRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFANPK-KDSQGIT 424 (646)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~-~~~~~~~ 424 (646)
+........++|..++|.|++.+++|.|..+.||..++..++++.+++|+++|++|++.+ .+..+.+
T Consensus 423 ------------k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~ 490 (1391)
T KOG0065|consen 423 ------------KKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGY 490 (1391)
T ss_pred ------------hccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccch
Confidence 001112224678899999999999999999999999999999999999999999999988 8888899
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch---H
Q 039035 425 NRLCFFVFTVCIFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK---S 501 (646)
Q Consensus 425 ~~~g~~ff~~~~~~~~~~~~v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~---~ 501 (646)
.+.|++||++.+.++..++.++...+.||||+|||...+|+++||.++.++.++|+.++.+++|.+|+||++||.+ +
T Consensus 491 ~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~r 570 (1391)
T KOG0065|consen 491 SRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGR 570 (1391)
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHh
Q 039035 502 FLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQ 581 (646)
Q Consensus 502 f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~ne 581 (646)
||.++++++++.+|+.++..++++++++...|+.++++.++.+.+++||+||.++||+||+|++||||+.||+|++++||
T Consensus 571 FF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NE 650 (1391)
T KOG0065|consen 571 FFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNE 650 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccC-----------CCCCccc----chHHHHHhcCCc-----ccCCChHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 039035 582 FQTNEPFAT-----------DRSGNIV----TGFDILDALHIK-----TEGWGKWEKVFILLGWAVFYRILFYIILRFFS 641 (646)
Q Consensus 582 f~~~~~~~~-----------~~~~c~~----~g~~~L~~~~~~-----~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~ 641 (646)
|++.++.+. +...|.. .|.++++..|+- +++.|.|+|+||+++|.++|.++..+++.|.+
T Consensus 651 F~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 651 FHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred hhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 999764221 1235632 355555443332 34789999999999999999999999998876
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-56 Score=424.87 Aligned_cols=233 Identities=29% Similarity=0.531 Sum_probs=210.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+. ..+|+|||+++++||+++|+||||||||||||||.|+..+++ |+|.++|+++.
T Consensus 2 mi~i~~l~K~fg~------------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~--G~I~i~g~~~~ 67 (240)
T COG1126 2 MIEIKNLSKSFGD------------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS--GSITVDGEDVG 67 (240)
T ss_pred eEEEEeeeEEeCC------------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC--ceEEECCEecc
Confidence 5899999999964 469999999999999999999999999999999999999988 99999998764
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ..+|+++|+|+|+.+|||++||.||+.++.. +..+.++++.++++.++|+++||.+.+|.+ |.+|||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~-~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGGQ 141 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-KVKKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGGQ 141 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhH-HHcCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcHH
Confidence 2 3578999999999999999999999998753 334578889999999999999999888765 67999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
||||+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+.. .+.+.+|||++|++|+++..|++
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999965 68999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCCCCChHHHHHH
Q 039035 247 KEVTLHVNRLGRKVPKGENSIEYLID 272 (646)
Q Consensus 247 ~~~~~~f~~~g~~~p~~~~~~d~~~~ 272 (646)
+++.. .|.+....+|+-.
T Consensus 221 ~~~f~--------~p~~~R~~~FL~~ 238 (240)
T COG1126 221 EEFFD--------NPKSERTRQFLSK 238 (240)
T ss_pred HHHhc--------CCCCHHHHHHHHh
Confidence 98754 3666666677643
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-52 Score=416.71 Aligned_cols=238 Identities=29% Similarity=0.476 Sum_probs=210.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++|+++.|..+. .+...+|+|||++|++||+++|+|.||||||||+|+|.++..|++ |+|.++|+++.
T Consensus 1 mI~l~~vsK~~~~~~-------~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts--G~v~v~G~di~ 71 (339)
T COG1135 1 MIELENVSKTFGQTG-------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS--GSVFVDGQDLT 71 (339)
T ss_pred CeEEEeeeeeeccCC-------CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC--ceEEEcCEecc
Confidence 489999999997631 134579999999999999999999999999999999999999988 99999998874
Q ss_pred c------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ...|++||+++|+.+|+...||.||+.|..++. +.+++++++||.++++.+||++.++.+ |.+|||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia--g~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSG 144 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA--GVPKAEIKQRVAELLELVGLSDKADRY-----PAQLSG 144 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc--CCCHHHHHHHHHHHHHHcCChhhhccC-----chhcCc
Confidence 2 346889999999999999999999999988764 478899999999999999999877654 678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+|||||+.+|++|++|||||+|||.+...|+++|+++.++ |.||+++||+++ .+.++|||+.+|++|++++.
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEe
Confidence 9999999999999999999999999999999999999999999865 999999999965 69999999999999999999
Q ss_pred cChhhHHHHHHhcCCCCCCCCChHHHHHHh
Q 039035 244 GPPKEVTLHVNRLGRKVPKGENSIEYLIDV 273 (646)
Q Consensus 244 g~~~~~~~~f~~~g~~~p~~~~~~d~~~~~ 273 (646)
|++.+++.. |.+.-..+|+.+.
T Consensus 224 G~v~~vF~~--------Pk~~~t~~fi~~~ 245 (339)
T COG1135 224 GTVSEVFAN--------PKHAITQEFIGET 245 (339)
T ss_pred ccHHHhhcC--------cchHHHHHHHHhh
Confidence 999998643 5554444554433
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=403.04 Aligned_cols=221 Identities=25% Similarity=0.477 Sum_probs=203.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+++++|+|+.|.+ +.+++|+|++|++||+++++|||||||||+||+|.+++.|++ |+|++||+++.
T Consensus 1 MI~~~nvsk~y~~------------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~--G~I~i~g~~i~ 66 (309)
T COG1125 1 MIEFENVSKRYGN------------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS--GEILIDGEDIS 66 (309)
T ss_pred CceeeeeehhcCC------------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC--ceEEECCeecc
Confidence 4799999999964 469999999999999999999999999999999999999988 99999999975
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ..+|+.||||-|+..|||++||.||+.+...+. ++++++.+++++++|+.+||++. ...+++|++|||||+
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~--~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQ 141 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL--GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQ 141 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc--CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchh
Confidence 4 468999999999999999999999999877653 68889999999999999999752 234567899999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||.+||||+.+|++|+||||+++|||.++.++-+.++++.++ |+|||++|||.. +..+++|||.+|++|+++..++|
T Consensus 142 QRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P 220 (309)
T COG1125 142 QRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTP 220 (309)
T ss_pred hHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCH
Confidence 9999999999999999999999999999999999999999875 999999999965 67899999999999999999999
Q ss_pred hhHHH
Q 039035 247 KEVTL 251 (646)
Q Consensus 247 ~~~~~ 251 (646)
+++..
T Consensus 221 ~~il~ 225 (309)
T COG1125 221 DEILA 225 (309)
T ss_pred HHHHh
Confidence 99975
No 13
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-50 Score=392.38 Aligned_cols=222 Identities=32% Similarity=0.483 Sum_probs=201.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|++++|++++.. +.|++|||++|++||+++||||||+|||||||+|.|+++|++ |+|+++|+++
T Consensus 7 ~~I~vr~v~~~fG~------------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~--GeI~i~G~~i 72 (263)
T COG1127 7 PLIEVRGVTKSFGD------------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK--GEILIDGEDI 72 (263)
T ss_pred ceEEEeeeeeecCC------------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC--CeEEEcCcch
Confidence 38999999999864 579999999999999999999999999999999999999988 9999999987
Q ss_pred Cc------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 90 SP------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 90 ~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
.. ...++++|+++|+..||..|||+||+.|..+-. ...+++..++.+..-|+.+||... +++.+|.+||
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~-~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELS 147 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH-TKLPESLIRELVLMKLELVGLRGA----AADLYPSELS 147 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhc
Confidence 42 246788999999999999999999999976543 247788889999999999999865 2345688999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||+||++||||++.+|+++++||||+||||.++..+-++++++.+. |.|++++|||.. .++.+||++++|.+|++++
T Consensus 148 GGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIA 226 (263)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999876 999999999976 5899999999999999999
Q ss_pred EcChhhHHH
Q 039035 243 QGPPKEVTL 251 (646)
Q Consensus 243 ~g~~~~~~~ 251 (646)
.|+++++..
T Consensus 227 ~Gt~~el~~ 235 (263)
T COG1127 227 EGTPEELLA 235 (263)
T ss_pred eCCHHHHHh
Confidence 999999864
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.3e-50 Score=416.95 Aligned_cols=223 Identities=35% Similarity=0.553 Sum_probs=200.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||+++|+. ++.+|+||||++++||++||+||||||||||||+|+|+..|++ |+|.++|.+..
T Consensus 4 ~i~~~~l~k~~~~-----------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~--G~i~i~G~~~~ 70 (293)
T COG1131 4 VIEVRNLTKKYGG-----------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS--GEILVLGYDVV 70 (293)
T ss_pred eeeecceEEEeCC-----------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc--eEEEEcCEeCc
Confidence 5788999999963 2479999999999999999999999999999999999999977 99999999876
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+||++|++.+++.+||+|||.|.+.++.. +....+++++++++.+||.+..+++ +++||+||||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kq 143 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL--SKEEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQ 143 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHH
Confidence 4 45788899999999999999999999999988743 2245567899999999999755444 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSG-STVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
|++||+||+++|++|||||||+||||.++.++.++|++++++| +||+++||+++ ++.++||+|++|++|++++.|+++
T Consensus 144 rl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987 89999999976 588899999999999999999999
Q ss_pred hHHHHHH
Q 039035 248 EVTLHVN 254 (646)
Q Consensus 248 ~~~~~f~ 254 (646)
++...+.
T Consensus 223 ~l~~~~~ 229 (293)
T COG1131 223 ELKEKFG 229 (293)
T ss_pred HHHHhhc
Confidence 8776654
No 15
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-50 Score=415.61 Aligned_cols=230 Identities=27% Similarity=0.490 Sum_probs=208.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++. .+|+|+|+++++||+++|+||||||||||||+|||+..|++ |+|.++|++++
T Consensus 3 ~i~l~~v~K~yg~~------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~--G~I~i~g~~vt 68 (338)
T COG3839 3 ELELKNVRKSFGSF------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS--GEILIDGRDVT 68 (338)
T ss_pred EEEEeeeEEEcCCc------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEECC
Confidence 68999999999642 28999999999999999999999999999999999999988 99999999987
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...+|.||+|+|+..|||+|||+||+.|+.+.+ +.++++.+++|+++.+.|+|++..|++ |++||||||||
T Consensus 69 ~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~--~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQR 141 (338)
T COG3839 69 DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR--GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQR 141 (338)
T ss_pred CCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC--CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHH
Confidence 5 345689999999999999999999999998765 567889999999999999999887765 67899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++++||||.|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||.+|++|++...|+|.+
T Consensus 142 VAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 142 VALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLE 220 (338)
T ss_pred HHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHH
Confidence 99999999999999999999999999999999999999875 899999999975 6788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHH
Q 039035 249 VTLHVNRLGRKVPKGENSIEYL 270 (646)
Q Consensus 249 ~~~~f~~~g~~~p~~~~~~d~~ 270 (646)
+..+ |.+.-.|+|+
T Consensus 221 ly~~--------P~n~fVA~Fi 234 (338)
T COG3839 221 LYER--------PANLFVAGFI 234 (338)
T ss_pred HhhC--------ccchhhhhhc
Confidence 8654 5555555554
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-49 Score=391.01 Aligned_cols=211 Identities=30% Similarity=0.508 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++||++.|..+. ....+|++||++|++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~--------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~--G~v~i~g~d~~~ 71 (226)
T COG1136 2 IELKNVSKIYGLGG--------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS--GEVLINGKDLTK 71 (226)
T ss_pred cEEeeeEEEeccCC--------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--ceEEECCEEcCc
Confidence 67999999987642 23679999999999999999999999999999999999999977 999999988752
Q ss_pred ------cc-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 92 ------SL-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 92 ------~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. .++.||||+|+..|.|++||.||+.+.+.+. ..+..+.+++++++++.+||.+..+. .+|.+|||
T Consensus 72 l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~--~~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSG 145 (226)
T COG1136 72 LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA--GKSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSG 145 (226)
T ss_pred CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc--CCChhHHHHHHHHHHHhcCChhhhcc----CCchhcCH
Confidence 12 3567999999999999999999999877554 33333567889999999999866552 23678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||||+|||||+.+|++++.||||.+||+.++.++++++++++++ |+|||++|||| .+.+.|||++.|.+|++
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999999875 99999999997 46789999999999983
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.1e-50 Score=401.70 Aligned_cols=220 Identities=35% Similarity=0.559 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|+++.
T Consensus 2 ~L~~~~ls~~y~~------------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~--G~V~l~g~~i~ 67 (258)
T COG1120 2 MLEVENLSFGYGG------------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS--GEVLLDGKDIA 67 (258)
T ss_pred eeEEEEEEEEECC------------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC--CEEEECCCchh
Confidence 5899999999974 469999999999999999999999999999999999999987 99999999875
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCC--CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPI--SWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. .++.+.+|||||.....+.+||+|.+.++..-+.... ..++.++.+++.|+.+|+.+.+++.+. +||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChh
Confidence 3 4577899999999988889999999998754332221 133445689999999999999888764 79999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||.|||||+++|++|+||||||.||...+.+++++++++++ +|+|||+++||++. ..++||++++|++|+++..|
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQG 221 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeec
Confidence 99999999999999999999999999999999999999999995 59999999999874 77899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+|+++.
T Consensus 222 ~p~evl 227 (258)
T COG1120 222 TPEEVL 227 (258)
T ss_pred Ccchhc
Confidence 998875
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=417.13 Aligned_cols=234 Identities=27% Similarity=0.464 Sum_probs=210.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..++++||+++|.+ ..+|+|+|++|++||+++|+|||||||||||++|||+..|++ |+|.++|+++
T Consensus 4 ~~l~i~~v~k~yg~------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~--G~I~l~G~~i 69 (352)
T COG3842 4 PALEIRNVSKSFGD------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS--GEILLDGEDI 69 (352)
T ss_pred ceEEEEeeeeecCC------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEC
Confidence 47999999999963 479999999999999999999999999999999999999988 9999999998
Q ss_pred Cc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 90 SP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+. ...+|.+|+|+|+..|||+|||+||+.|+.+++. ...+++.+++|+++++.++|++.++++ |.+|||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~-~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQ 143 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK-KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQ 143 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC-CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHH
Confidence 75 3457899999999999999999999999987432 245667889999999999999866544 6799999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||+|||||+.+|++|+||||.|+||...+.++...|+++.+ .|.|.|++|||.. +...++|||.+|++|+|...|+|+
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHH
Confidence 99999999999999999999999999999999999999986 4999999999975 578899999999999999999999
Q ss_pred hHHHHHHhcCCCCCCCCChHHHHHH
Q 039035 248 EVTLHVNRLGRKVPKGENSIEYLID 272 (646)
Q Consensus 248 ~~~~~f~~~g~~~p~~~~~~d~~~~ 272 (646)
++.. .|.+.-.|+|+-+
T Consensus 223 eiY~--------~P~~~fVA~FiG~ 239 (352)
T COG3842 223 EIYE--------RPATRFVADFIGE 239 (352)
T ss_pred HHhh--------CcchHHHHHHhCc
Confidence 9854 3666667777654
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=376.75 Aligned_cols=221 Identities=31% Similarity=0.524 Sum_probs=204.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|++++|+++|+.. .++++||||+++.||+++|+|||||||||+|++|++++.|++ |+|.++|.+..
T Consensus 1 Ml~v~~l~K~y~~~-----------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~--G~v~idg~d~~ 67 (245)
T COG4555 1 MLEVTDLTKSYGSK-----------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS--GKVTIDGVDTV 67 (245)
T ss_pred CeeeeehhhhccCH-----------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC--ceEEEeecccc
Confidence 47899999999753 458999999999999999999999999999999999999988 99999998864
Q ss_pred --cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 --PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 --~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+...|++||.++.+..++..||++|||.|.+++. +++..+.+++++++.+.|+|.++.|+++| ++|.||||
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~--~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kq 140 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN--GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQ 140 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHH
Confidence 3567899999998889999999999999999875 56778889999999999999999999987 69999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||... ++.++||++++|++|++++.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999999999999999999999999999999999965 6899999999999999999999988
Q ss_pred HHHH
Q 039035 249 VTLH 252 (646)
Q Consensus 249 ~~~~ 252 (646)
+...
T Consensus 220 l~~r 223 (245)
T COG4555 220 LDAR 223 (245)
T ss_pred HHHH
Confidence 7643
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-49 Score=389.10 Aligned_cols=204 Identities=31% Similarity=0.494 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++++++.|.. ..+|+|||+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|+++.
T Consensus 3 ~l~i~~v~~~f~~------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~--G~V~~~g~~v~ 68 (248)
T COG1116 3 LLEIEGVSKSFGG------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS--GEVLLDGRPVT 68 (248)
T ss_pred eEEEEeeEEEeCc------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCcccC
Confidence 5889999999964 469999999999999999999999999999999999999987 99999999883
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
.....+|||+|++.|+|.+||+||+.++...+ +.++++.+++++++|+.+||.+..|. +|++|||||||||
T Consensus 69 --~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~--~~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRV 139 (248)
T COG1116 69 --GPGPDIGYVFQEDALLPWLTVLDNVALGLELR--GKSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRV 139 (248)
T ss_pred --CCCCCEEEEeccCcccchhhHHhhheehhhcc--ccchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHH
Confidence 33577999999999999999999999998764 25667778899999999999887665 4789999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+|||||+.+|++|+||||+++||+.++..+.+.|.++.+ .++||+++|||..+ ...++|||++|+++
T Consensus 140 aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 140 AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999875 58999999999865 56799999999984
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-49 Score=381.42 Aligned_cols=222 Identities=28% Similarity=0.484 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+++ +++|+|||++|++||++||+||||||||||||+|+|+..+++ |+|.+||.++.
T Consensus 3 ~i~~~nl~k~yp~~-----------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~--G~i~~~g~~i~ 69 (258)
T COG3638 3 MIEVKNLSKTYPGG-----------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS--GEILFNGVQIT 69 (258)
T ss_pred eEEEeeeeeecCCC-----------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc--ceEEecccchh
Confidence 68999999999743 579999999999999999999999999999999999999987 99999998764
Q ss_pred c------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 91 P------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG------PISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
. ..+|+++||++|+..|.+.+||.+|+..+..-+.+ ++..++.+..+-+.|+++|+.+.+.++.+
T Consensus 70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~--- 146 (258)
T COG3638 70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS--- 146 (258)
T ss_pred ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc---
Confidence 2 34678999999999999999999999877533221 22234556788899999999988877764
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+|||||+|||+|||+|+.+|++++.|||+++|||.++.++|+.|+++++ +|.|||++.||.. .+.++|||++-|++
T Consensus 147 --~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~ 223 (258)
T COG3638 147 --TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKA 223 (258)
T ss_pred --cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecC
Confidence 6999999999999999999999999999999999999999999999986 6999999999975 57899999999999
Q ss_pred CeEEEEcChhhHHH
Q 039035 238 GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 G~iv~~g~~~~~~~ 251 (646)
|+++|+||++++.+
T Consensus 224 G~ivfDg~~~el~~ 237 (258)
T COG3638 224 GRIVFDGPASELTD 237 (258)
T ss_pred CcEEEeCChhhhhH
Confidence 99999999988654
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=390.11 Aligned_cols=218 Identities=30% Similarity=0.558 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+++ ++|+|||+++++|++++|+||||||||||+|+|.|+++|.+ |+|.++|++..
T Consensus 4 ~i~v~nl~v~y~~~------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~--G~i~~~g~~~~ 69 (254)
T COG1121 4 MIEVENLTVSYGNR------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS--GEIKIFGKPVR 69 (254)
T ss_pred EEEEeeeEEEECCE------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc--ceEEEcccccc
Confidence 68999999999742 49999999999999999999999999999999999999987 99999999876
Q ss_pred cccccccEEEEccCC---CCCCCCCHHHHHHHHHHccCC---CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PSLIKRTSAYIMQED---RLFPMLTVFETLMFAADFRLG---PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
...-+.+||||||.. .-|| +||+|.+..+..-+.+ ..+ ++.++.++++|+.+|+.+.+|+.+| +|||
T Consensus 70 ~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 70 KRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred ccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 443357899999964 3355 6999999887433321 123 3347899999999999999999987 6999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+++.|+ +++++.|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999999999999999999999999999986 5889999999995 6788999
Q ss_pred ChhhHHH
Q 039035 245 PPKEVTL 251 (646)
Q Consensus 245 ~~~~~~~ 251 (646)
+++++..
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9988753
No 23
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-48 Score=366.25 Aligned_cols=214 Identities=28% Similarity=0.480 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+|+|+++.|++. +.+|+||||++++||++-|.||||||||||||+|.+..+|++ |+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~~g-----------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~--G~i~~~~~dl~ 67 (223)
T COG2884 1 MIRFENVSKAYPGG-----------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR--GKILVNGHDLS 67 (223)
T ss_pred CeeehhhhhhcCCC-----------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC--ceEEECCeecc
Confidence 47899999999764 469999999999999999999999999999999999999988 99999999975
Q ss_pred c------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ..+|++||+|+||..|.+..||+||+.|+.+.. +.+.++.+++|.++|+.+||.+.++.. |.+|||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~--G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSG 140 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI--GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSG 140 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc--CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccCc
Confidence 3 247899999999999999999999999987654 467788999999999999999877654 678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|.||+++|||. ..+..+-.|++.|++|+++.+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999999999999999999999999994 5677788899999999998765
Q ss_pred C
Q 039035 245 P 245 (646)
Q Consensus 245 ~ 245 (646)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 4
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-48 Score=391.96 Aligned_cols=222 Identities=29% Similarity=0.490 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe---
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK--- 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~--- 87 (646)
+|+++|+++.++. ..+++|||++|+.||++|++|||||||||||++|+|++.|+. |.|.+||+
T Consensus 2 ~i~i~~~~~~~~~------------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~--G~I~~~~~~l~ 67 (345)
T COG1118 2 SIRINNVKKRFGA------------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA--GRIRLNGRVLF 67 (345)
T ss_pred ceeehhhhhhccc------------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC--ceEEECCEecc
Confidence 4677888877754 468999999999999999999999999999999999999988 99999999
Q ss_pred eCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 88 ETSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 88 ~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
+.+. ..-.|+||||+|+..+|++|||.+|+.|+.+.+....++.+.+.+++++|+.+.|++.++ ++|.+|||||
T Consensus 68 D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQ 142 (345)
T COG1118 68 DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQ 142 (345)
T ss_pred chhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHH
Confidence 5443 233578999999999999999999999999877444567788999999999999986554 5678999999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||++||||+.+|++|+||||+++||...+.++.+-|+++.++ |.|++++|||+. ++.++||||++|++|+|...|+
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCC
Confidence 99999999999999999999999999999999999999999876 999999999975 6899999999999999999999
Q ss_pred hhhHHHH
Q 039035 246 PKEVTLH 252 (646)
Q Consensus 246 ~~~~~~~ 252 (646)
++++.+.
T Consensus 222 p~ev~~~ 228 (345)
T COG1118 222 PDEVYDH 228 (345)
T ss_pred HHHHhcC
Confidence 9998653
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-48 Score=367.84 Aligned_cols=235 Identities=26% Similarity=0.440 Sum_probs=203.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CcceeEEEECC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS---GSLKGKVTLDG 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~---~~~~G~I~~~g 86 (646)
..++++||++.|+. +++|+|||+.|++++++|+||||||||||||+++..+... .+++|+|.++|
T Consensus 6 ~~~~~~~l~~yYg~------------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 6 PAIEVRDLNLYYGD------------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred ceeEecceeEEECc------------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 36899999999964 4799999999999999999999999999999999987543 35789999999
Q ss_pred eeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ..+|+++|+|+|.+..|| +|++||+.|+.++. +...++.++.|+..|+...|.+.-..++ ++...+
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~--g~~~~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~ 149 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH--GIKDKELDEIVESSLKKAALWDEVKDRL-HKSALG 149 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh--ccchHHHHHHHHHHHHHhHhHHHhHHHh-hCCccC
Confidence 98743 357999999999999999 89999999998764 3333777889999999999975432233 344668
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++|||+|+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELV 227 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEE
Confidence 999999999999999999999999999999999999999999999984 699999999975 678899999999999999
Q ss_pred EEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 039035 242 FQGPPKEVTLHVNRLGRKVPKGENSIEYL 270 (646)
Q Consensus 242 ~~g~~~~~~~~f~~~g~~~p~~~~~~d~~ 270 (646)
++|++++++. .|.+..+.||+
T Consensus 228 E~g~T~~iF~--------~P~~~~TedYi 248 (253)
T COG1117 228 EFGPTDKIFT--------NPKHKRTEDYI 248 (253)
T ss_pred EEcCHHhhhc--------CccHHHHHHHh
Confidence 9999999864 36666666665
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.3e-47 Score=402.04 Aligned_cols=222 Identities=29% Similarity=0.467 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|+.+. ..+.+|+||||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 mI~~~~lsk~y~~~~--------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~--G~I~i~G~~i~ 70 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS--GSVIVDGQDLT 70 (343)
T ss_pred CEEEEEEEEEECCCC--------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 489999999996321 12469999999999999999999999999999999999999987 99999999875
Q ss_pred c---c---cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P---S---LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. . ..++.+||++|+..+++.+||+||+.+..... +.++++.++++.++++.+||.+..|.+ +++|||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSg 143 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSG 143 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCH
Confidence 3 1 24678999999999999999999999876532 345666778899999999998776655 568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+|||||+.+|++|+||||||+||+.++..++++|++++++ |.|||++||++. .+.++||++++|++|++++.
T Consensus 144 GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 58899999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 223 g~~~~v~ 229 (343)
T TIGR02314 223 GTVSEIF 229 (343)
T ss_pred cCHHHHH
Confidence 9998874
No 27
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1e-46 Score=396.58 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=197.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..++++||+++|++ +.+|+||||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++
T Consensus 6 ~~i~i~~l~k~~~~------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~--G~v~i~G~~~ 71 (306)
T PRK13537 6 APIDFRNVEKRYGD------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA--GSISLCGEPV 71 (306)
T ss_pred ceEEEEeEEEEECC------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEec
Confidence 37999999999953 359999999999999999999999999999999999999987 9999999987
Q ss_pred Cc--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 90 SP--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 90 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
.. ...++.+|||+|++.+++.+||+||+.|.+.++ +.+..+.+++++++++.++|.+..++.+ ++||||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 144 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMK 144 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHH
Confidence 53 245678999999999999999999999876653 3344555678899999999988777776 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||++||+||+++|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 145 qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999888999999999975 688999999999999999999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 224 ~l~~ 227 (306)
T PRK13537 224 ALIE 227 (306)
T ss_pred HHHh
Confidence 8754
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-46 Score=401.91 Aligned_cols=220 Identities=26% Similarity=0.440 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~-----------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~--G~I~~~g~~i~ 69 (356)
T PRK11650 3 GLKLQAVRKSYDG-----------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS--GEIWIGGRVVN 69 (356)
T ss_pred EEEEEeEEEEeCC-----------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc--eEEEECCEECC
Confidence 5899999999942 1359999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|++.++|++||+||+.|+.+.+ +.++++.+++++++++.+||++..+++ +++||||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QR 142 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR--GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQR 142 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHH
Confidence 3 223578999999999999999999999987543 345566678899999999998776655 46899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|++++
T Consensus 143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 999999999975 5889999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 222 ~~~ 224 (356)
T PRK11650 222 VYE 224 (356)
T ss_pred HHh
Confidence 753
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-46 Score=400.08 Aligned_cols=219 Identities=25% Similarity=0.455 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~--G~I~~~g~~i~ 71 (351)
T PRK11432 6 FVVLKNITKRFGS------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE--GQIFIDGEDVT 71 (351)
T ss_pred EEEEEeEEEEECC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc--eEEEECCEECC
Confidence 7999999999953 358999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||.+..+++ +++||||||||
T Consensus 72 ~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QR 144 (351)
T PRK11432 72 HRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML--GVPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQR 144 (351)
T ss_pred CCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 3 233578999999999999999999999987643 345667778999999999998766554 56899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999865 999999999975 5889999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 224 ~~~ 226 (351)
T PRK11432 224 LYR 226 (351)
T ss_pred HHh
Confidence 753
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-47 Score=369.18 Aligned_cols=222 Identities=31% Similarity=0.449 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+++.. -..+|+|||+++++||+++|+|+||||||||.++|+|+.+|++ |+|.++|++..
T Consensus 3 ~l~v~nl~~~y~~~~~--------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~--G~I~~~G~~~~ 72 (252)
T COG1124 3 LLSVRNLSIVYGGGKF--------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS--GSILLDGKPLA 72 (252)
T ss_pred eEEEeceEEEecCCcc--------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC--ceEEECCcccC
Confidence 6899999999987532 1269999999999999999999999999999999999999987 99999998765
Q ss_pred cc----cccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS----LIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
+. .+.+.+-+|+||+ .+.|..||++.|.-+... .+.++ .++++.++++.+||.+. ..+++|.+|||
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~--~~~~~--~~~~i~~~L~~VgL~~~----~l~R~P~eLSG 144 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP--HGLSK--SQQRIAELLDQVGLPPS----FLDRRPHELSG 144 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--CCccH--HHHHHHHHHHHcCCCHH----HHhcCchhcCh
Confidence 42 4678899999998 589999999999887654 23333 34459999999999753 33456889999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++|||||+.+|++||||||||+||+..+.+|+++|.+++++ |.|.|+++||.. .+..+|||+++|++|++++.
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEe
Confidence 9999999999999999999999999999999999999999999874 899999999965 68999999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
++.+++..
T Consensus 224 ~~~~~l~~ 231 (252)
T COG1124 224 GPTEELLS 231 (252)
T ss_pred echhhhhc
Confidence 99999864
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2e-46 Score=400.60 Aligned_cols=219 Identities=27% Similarity=0.466 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~--G~I~i~g~~~~ 69 (353)
T TIGR03265 4 YLSIDNIRKRFGA------------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA--GTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc--eEEEECCEECC
Confidence 6899999999963 358999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..+||++||+||+.|+...+ +.++++.+++++++++.+||++..++. +++||||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~--~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QR 142 (353)
T TIGR03265 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR--GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQR 142 (353)
T ss_pred CCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHH
Confidence 3 234678999999999999999999999987543 345667778999999999998877655 56899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++|||+. ++..++|++++|++|++++.|++++
T Consensus 143 vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999875 999999999975 6889999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 222 ~~~ 224 (353)
T TIGR03265 222 IYR 224 (353)
T ss_pred HHh
Confidence 864
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.9e-46 Score=400.13 Aligned_cols=223 Identities=26% Similarity=0.431 Sum_probs=198.9
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
++.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++.+|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~ 70 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA------------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD 70 (362)
T ss_pred ceEEEEEEEEEEECC------------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEE
Confidence 568999999999953 35899999999999999999999999999999999999885444999999998
Q ss_pred CCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 89 TSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 89 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
+.. ...++.+|||+|+..++|.+||+||+.|+...+ +.++++.+++++++++.+||++..+++ +++||||||
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~ 143 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ--KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQ 143 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHH
Confidence 753 224578999999999999999999999987543 345666778899999999998777665 468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS--GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.++ |+|+|++||++. ++..++|++++|++|+++..|+
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999975 5788999999999999999999
Q ss_pred hhhHHH
Q 039035 246 PKEVTL 251 (646)
Q Consensus 246 ~~~~~~ 251 (646)
++++..
T Consensus 223 ~~~~~~ 228 (362)
T TIGR03258 223 PQALYD 228 (362)
T ss_pred HHHHHh
Confidence 998854
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.9e-46 Score=378.28 Aligned_cols=218 Identities=29% Similarity=0.488 Sum_probs=190.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~~ 66 (235)
T cd03261 1 IELRGLTKSFGG------------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS--GEVLIDGEDISG 66 (235)
T ss_pred CeEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEccc
Confidence 578999999853 359999999999999999999999999999999999999977 999999988642
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 92 ------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 92 ------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
..+++.++||+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++.+ ++||||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 140 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT-RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGG 140 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 2346789999999999999999999998754321 2344555678899999999987666554 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999874 999999999975 578899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 220 ~~~~~~ 225 (235)
T cd03261 220 TPEELR 225 (235)
T ss_pred CHHHHc
Confidence 887653
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.5e-46 Score=400.08 Aligned_cols=224 Identities=23% Similarity=0.435 Sum_probs=198.6
Q ss_pred CCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC
Q 039035 6 VDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD 85 (646)
Q Consensus 6 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 85 (646)
......|+++||++.|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++
T Consensus 9 ~~~~~~L~l~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~--G~I~~~ 74 (375)
T PRK09452 9 SSLSPLVELRGISKSFDG------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS--GRIMLD 74 (375)
T ss_pred ccCCceEEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEEC
Confidence 333447999999999953 358999999999999999999999999999999999999977 999999
Q ss_pred CeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 86 GKETSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 86 g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
|+++.. ...++.+|||+|+..+||.+||+||+.|+.+.+ +.+..+.+++++++++.+||++..+++ +++|||
T Consensus 75 g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSg 147 (375)
T PRK09452 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ--KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSG 147 (375)
T ss_pred CEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCH
Confidence 998753 224578999999999999999999999986533 345566677899999999998776655 568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+|||||+.+|++|||||||+|||+..+..+.+.|++++++ |+|+|++||++. ++..++|++++|++|+++..
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999975 58889999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 227 g~~~~i~~ 234 (375)
T PRK09452 227 GTPREIYE 234 (375)
T ss_pred cCHHHHHh
Confidence 99988753
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.4e-46 Score=393.54 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 41 ~i~i~nl~k~y~~------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~--G~i~i~G~~~~ 106 (340)
T PRK13536 41 AIDLAGVSKSYGD------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA--GKITVLGVPVP 106 (340)
T ss_pred eEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc--eEEEECCEECC
Confidence 6999999999953 359999999999999999999999999999999999999987 99999999875
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+||++|++.+++.+||+||+.+...++ +.+..+.+++++++++.+||.+..++.++ +|||||||
T Consensus 107 ~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kq 179 (340)
T PRK13536 107 ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKR 179 (340)
T ss_pred cchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHH
Confidence 3 245678999999999999999999999866543 23444556678899999999987777764 79999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|++||+||+++|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~ 258 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHA 258 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999888999999999975 6889999999999999999999998
Q ss_pred HHHH
Q 039035 249 VTLH 252 (646)
Q Consensus 249 ~~~~ 252 (646)
+...
T Consensus 259 l~~~ 262 (340)
T PRK13536 259 LIDE 262 (340)
T ss_pred HHhh
Confidence 8643
No 36
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-46 Score=373.14 Aligned_cols=221 Identities=27% Similarity=0.451 Sum_probs=198.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|++|+|+.+ ..+|+++|+++++||.++|+||||||||||+++|+|+++|.+ |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~--G~v~~~g~~~~ 69 (235)
T COG1122 3 MIEAENLSFRYPGR-----------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS--GEVLVDGLDTS 69 (235)
T ss_pred eEEEEEEEEEcCCC-----------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC--CEEEECCeecc
Confidence 58899999999753 469999999999999999999999999999999999999987 99999999865
Q ss_pred ----cccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 ----PSLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ----~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
...+++++|||+|++. .+..-||.|.+.|+.... +.++++.+++++++++.+|+.+.+++. +..||||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~--g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSGG 142 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL--GLPREEIEERVAEALELVGLEELLDRP-----PFNLSGG 142 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc--CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCCc
Confidence 3467899999999973 455569999999987643 467778899999999999999876654 5789999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|||++|||.. .+.+++|++++|++|+++++|
T Consensus 143 qkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred ceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999999987 799999999965 688999999999999999999
Q ss_pred ChhhHHHH
Q 039035 245 PPKEVTLH 252 (646)
Q Consensus 245 ~~~~~~~~ 252 (646)
+++++...
T Consensus 222 ~p~~i~~~ 229 (235)
T COG1122 222 DPAEIFND 229 (235)
T ss_pred CHHHHhhh
Confidence 99887653
No 37
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=393.39 Aligned_cols=221 Identities=25% Similarity=0.443 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 2 ~L~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~--G~I~i~g~~i~ 67 (353)
T PRK10851 2 SIEIANIKKSFGR------------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS--GHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEEeCC------------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECC
Confidence 4889999999853 359999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL--GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ...++.+|||+|++.++|.+||+||+.|+...+. ...++++.+++++++++.++|++..+++ +++||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 3 2345789999999999999999999999865421 1234566678899999999998766655 568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|++++.|++
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~ 221 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTP 221 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999876 899999999975 58899999999999999999999
Q ss_pred hhHHH
Q 039035 247 KEVTL 251 (646)
Q Consensus 247 ~~~~~ 251 (646)
+++..
T Consensus 222 ~~i~~ 226 (353)
T PRK10851 222 DQVWR 226 (353)
T ss_pred HHHHh
Confidence 98853
No 38
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-47 Score=358.70 Aligned_cols=222 Identities=27% Similarity=0.475 Sum_probs=200.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|..+||.++|++ ++++++||+++++||+++++|||||||||.+.++.|+.+|++ |+|.+||.++
T Consensus 3 ~~L~a~~l~K~y~k------------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~--G~i~ld~~di 68 (243)
T COG1137 3 STLVAENLAKSYKK------------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS--GKILLDDEDI 68 (243)
T ss_pred cEEEehhhhHhhCC------------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC--ceEEECCccc
Confidence 36889999999864 469999999999999999999999999999999999999998 9999999998
Q ss_pred Ccc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 90 SPS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 90 ~~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
+.. ..|..+||+||++..|..|||+||+....+.+.......+.+++++++|++++|.+.++++- ..||||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGG 143 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGG 143 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccc
Confidence 742 23556999999999999999999999888776433334566678999999999999888764 479999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||+.|||||+.+|+.++||||++|.||.+..+|-++++.|++.|..|++|-|+.. +...+|||.+++++|++..+|+
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~ 222 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGS 222 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCC
Confidence 999999999999999999999999999999999999999999999999999999977 5778999999999999999999
Q ss_pred hhhHHH
Q 039035 246 PKEVTL 251 (646)
Q Consensus 246 ~~~~~~ 251 (646)
++++..
T Consensus 223 p~ei~~ 228 (243)
T COG1137 223 PEEIVN 228 (243)
T ss_pred HHHHhc
Confidence 999864
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=393.86 Aligned_cols=219 Identities=28% Similarity=0.428 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 19 ~l~l~~v~~~~~~------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~--G~I~i~g~~i~ 84 (377)
T PRK11607 19 LLEIRNLTKSFDG------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA--GQIMLDGVDLS 84 (377)
T ss_pred eEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 6999999999853 358999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..+||++||.||+.|+.+.+ +.++++.+++++++++.+||.+..++. +++||||||||
T Consensus 85 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~--~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QR 157 (377)
T PRK11607 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD--KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQR 157 (377)
T ss_pred CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 3 234678999999999999999999999986543 345566778899999999998766554 56899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||+|||...+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|++++
T Consensus 158 VaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 4999999999975 6889999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 237 ~~~ 239 (377)
T PRK11607 237 IYE 239 (377)
T ss_pred HHh
Confidence 754
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.3e-45 Score=385.12 Aligned_cols=220 Identities=27% Similarity=0.431 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++
T Consensus 3 ~~i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~--G~i~~~g~~~ 68 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--GKITVLGEPV 68 (303)
T ss_pred cEEEEEeEEEEeCC------------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEC
Confidence 36899999999953 359999999999999999999999999999999999999977 9999999986
Q ss_pred Cc--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 90 SP--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 90 ~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
.. ...++.+||++|++.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++.+ ++||||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~ 141 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF--GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMK 141 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHH
Confidence 42 234678999999999999999999998755432 2344455567889999999987777665 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999888999999999975 688899999999999999999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-45 Score=368.46 Aligned_cols=216 Identities=28% Similarity=0.508 Sum_probs=189.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++..
T Consensus 1 i~~~~~~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~ 66 (220)
T cd03265 1 IEVENLVKKYGD------------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS--GRATVAGHDVVR 66 (220)
T ss_pred CEEEEEEEEECC------------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEecCc
Confidence 578999999853 359999999999999999999999999999999999999977 999999987642
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
...++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||++..++++ +.||||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 139 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY--GVPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRR 139 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHH
Confidence 234567999999999999999999999876543 2334455678899999999987666654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999999999876 899999999975 5788999999999999999988765
Q ss_pred H
Q 039035 249 V 249 (646)
Q Consensus 249 ~ 249 (646)
+
T Consensus 219 ~ 219 (220)
T cd03265 219 L 219 (220)
T ss_pred c
Confidence 3
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=393.78 Aligned_cols=219 Identities=28% Similarity=0.447 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~i~~l~~~~~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~--G~I~~~g~~i~ 68 (369)
T PRK11000 3 SVTLRNVTKAYGD------------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS--GDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 4899999999953 358999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||++..++. +.+||||||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QR 141 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQR 141 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc--CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHH
Confidence 3 223567999999999999999999999986543 234556667899999999998766655 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++. ++.++||++++|++|+++..|++++
T Consensus 142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999875 999999999975 5788999999999999999999988
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 221 i~~ 223 (369)
T PRK11000 221 LYH 223 (369)
T ss_pred HHh
Confidence 753
No 43
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.7e-45 Score=367.36 Aligned_cols=210 Identities=27% Similarity=0.479 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 68 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR--GKIRFNGQDLT 68 (216)
T ss_pred CeEEEEEEEEecCC----------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEehh
Confidence 37899999999532 1359999999999999999999999999999999999999877 99999999864
Q ss_pred c---c---cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P---S---LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. . .+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ .+|||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 141 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII--GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSG 141 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 2 1 24578999999999999999999999876532 2234445678899999999987666554 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 142 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 142 GEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999999878999999999975 57789999999999974
No 44
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.3e-46 Score=345.21 Aligned_cols=215 Identities=28% Similarity=0.503 Sum_probs=189.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|.+++++++|+.-. =..+++++.||++||+||||||||||||+|+|...|.+ |+|++||++.+.
T Consensus 2 l~L~~V~~~y~~~~--------------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~--G~i~i~g~d~t~ 65 (231)
T COG3840 2 LALDDVRFSYGHLP--------------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS--GEILINGVDHTA 65 (231)
T ss_pred ccccceEEeeCcce--------------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC--ceEEEcCeecCc
Confidence 56788888886531 25788999999999999999999999999999999987 999999999764
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
....|-+++++|+.++|.+|||.+|+.++..-.+ +++ ++.+++++.++.++||..+.++. |.+|||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L-kL~-a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRv 138 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL-KLN-AEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRV 138 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc-ccC-HHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHH
Confidence 3456779999999999999999999988754322 133 45568899999999999877655 568999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
++||+|+.+-+||+||||+|.|||..+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|||.+.|+.++.
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999999999999999999986 5899999999987 57899999999999999999998876
Q ss_pred H
Q 039035 250 T 250 (646)
Q Consensus 250 ~ 250 (646)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 5
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-45 Score=365.67 Aligned_cols=211 Identities=30% Similarity=0.507 Sum_probs=184.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~~ 66 (213)
T cd03259 1 LELKGLSKTYGS------------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS--GEILIDGRDVTG 66 (213)
T ss_pred CeeeeeEEEeCC------------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEEcCc
Confidence 478999999853 359999999999999999999999999999999999999877 999999998753
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +.||||||||+
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 139 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR--GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRV 139 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHH
Confidence 224567999999999999999999998865432 2334455667899999999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++++.|
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999987 4999999999975 578899999999999998765
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-45 Score=388.34 Aligned_cols=222 Identities=28% Similarity=0.466 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|+.+. .++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 1 mi~i~~l~~~y~~~~--------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~--G~I~~~g~~i~ 70 (343)
T PRK11153 1 MIELKNISKVFPQGG--------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS--GRVLVDGQDLT 70 (343)
T ss_pred CEEEEeEEEEeCCCC--------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 478999999996321 12469999999999999999999999999999999999999977 99999999875
Q ss_pred c---c---cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P---S---LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. . ..++.+|||+|++.+++.+||+||+.+....+ +.+.++.+++++++++.+||.+..++. +++|||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSg 143 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA--GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSG 143 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCH
Confidence 3 1 23678999999999999999999999876543 234555667899999999998766655 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.
T Consensus 144 Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 57889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 223 g~~~~~~ 229 (343)
T PRK11153 223 GTVSEVF 229 (343)
T ss_pred cCHHHHH
Confidence 9988874
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-45 Score=369.34 Aligned_cols=220 Identities=24% Similarity=0.436 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 67 (239)
T cd03296 2 SIEVRNVSKRFGD------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS--GTILFGGEDAT 67 (239)
T ss_pred EEEEEeEEEEECC------------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 4889999999953 359999999999999999999999999999999999999877 99999999864
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ...++.++|++|++.+++.+||+||+.+....+.. ....++..++++++++.+||.+..++.+ ++||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 3 12356799999999999999999999987543211 0123344567889999999987666554 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 221 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTP 221 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCH
Confidence 9999999999999999999999999999999999999999875 899999999975 57889999999999999999998
Q ss_pred hhHH
Q 039035 247 KEVT 250 (646)
Q Consensus 247 ~~~~ 250 (646)
+++.
T Consensus 222 ~~~~ 225 (239)
T cd03296 222 DEVY 225 (239)
T ss_pred HHHh
Confidence 7763
No 48
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.5e-45 Score=369.43 Aligned_cols=219 Identities=31% Similarity=0.510 Sum_probs=189.3
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||++.|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+++|.+ |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 66 (236)
T cd03219 1 LEVRGLTKRFGG------------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS--GSVLFDGEDITG 66 (236)
T ss_pred CeeeeeEEEECC------------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC--ceEEECCEECCC
Confidence 478999999853 359999999999999999999999999999999999999877 999999998753
Q ss_pred c---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-C-------CHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 92 S---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-I-------SWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 92 ~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~-------~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
. . .++.++|++|++.+++.+||+||+.+........ . ..++..++++++++.+||++..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 2456999999999999999999999875432111 0 13444567899999999987666554
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGR 220 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 579999999999999999999999999999999999999999999999878999999999976 5788999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (236)
T cd03219 221 VIAEGTPDEVR 231 (236)
T ss_pred EEeecCHHHhc
Confidence 99999887763
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.5e-45 Score=368.04 Aligned_cols=216 Identities=29% Similarity=0.509 Sum_probs=189.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~ 66 (232)
T cd03218 1 LRAENLSKRYGK------------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS--GKILLDGQDITK 66 (232)
T ss_pred CeEEEEEEEeCC------------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEeccc
Confidence 578999999853 359999999999999999999999999999999999999977 999999998642
Q ss_pred ---cc-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 92 ---SL-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 92 ---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
.. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++.+ +.||||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGER 139 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHH
Confidence 12 2457999999999999999999998865432 2234445667899999999987666554 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|+.+
T Consensus 140 qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 140 RRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHH
Confidence 9999999999999999999999999999999999999999888999999999976 588899999999999999999887
Q ss_pred hH
Q 039035 248 EV 249 (646)
Q Consensus 248 ~~ 249 (646)
++
T Consensus 219 ~~ 220 (232)
T cd03218 219 EI 220 (232)
T ss_pred Hh
Confidence 65
No 50
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=377.89 Aligned_cols=235 Identities=28% Similarity=0.418 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++|++++|+.+.. ..+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 71 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-------FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE--GKVTVGDIVVS 71 (288)
T ss_pred CEEEEEEEEEeCCCCc-------ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC--cEEEECCEECc
Confidence 4889999999964210 12359999999999999999999999999999999999999987 99999999864
Q ss_pred c-------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 039035 91 P-------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 160 (646)
. ..+++.+|||+|++ .+++ .||.||+.|+.... +.+.++.++++.++++.+||. +..++. ++
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF--GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 23567899999986 4555 59999999876432 244566677899999999996 344443 56
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHI 222 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999888999999999975 57789999999999999
Q ss_pred EEEcChhhHHH---HHHhcCCCCCCC
Q 039035 241 MFQGPPKEVTL---HVNRLGRKVPKG 263 (646)
Q Consensus 241 v~~g~~~~~~~---~f~~~g~~~p~~ 263 (646)
++.|+++++.. .+...|+.+|..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCChH
Confidence 99999998753 344566666543
No 51
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1e-44 Score=380.89 Aligned_cols=218 Identities=30% Similarity=0.500 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|++++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~--G~i~i~g~~~~ 67 (301)
T TIGR03522 2 SIRVSSLTKLYGT------------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS--GSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEECC------------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEcc
Confidence 3789999999953 359999999999999999999999999999999999999987 99999999875
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+||++|++.+++.+||.||+.+.+.++ +.+.++..++++++++.+||.+..++.+ +.|||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~q 140 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY--GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQ 140 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHH
Confidence 3 235678999999999999999999999877653 2344555678899999999998777665 479999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 799999999975 6889999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 219 ~~~ 221 (301)
T TIGR03522 219 LSA 221 (301)
T ss_pred HHH
Confidence 755
No 52
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.1e-45 Score=367.54 Aligned_cols=216 Identities=28% Similarity=0.443 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCcceeEEEECC
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI-----ASGSLKGKVTLDG 86 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~-----~~~~~~G~I~~~g 86 (646)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~--G~i~~~g 66 (227)
T cd03260 1 IELRDLNVYYGD------------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE--GEVLLDG 66 (227)
T ss_pred CEEEEEEEEcCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC--eEEEECC
Confidence 578999998853 35999999999999999999999999999999999999 7766 9999999
Q ss_pred eeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ..+++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+||.+..++... +++
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~ 141 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG-IKLKEELDERVEEALRKAALWDEVKDRLH---ALG 141 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCChHHhccCC---ccc
Confidence 98642 23467899999999888 7899999998754321 11223345778999999999876554421 368
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++++|++|+++
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999887 99999999975 577899999999999999
Q ss_pred EEcChhh
Q 039035 242 FQGPPKE 248 (646)
Q Consensus 242 ~~g~~~~ 248 (646)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9998765
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=363.19 Aligned_cols=216 Identities=31% Similarity=0.492 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~- 69 (220)
T cd03293 1 LEVRNVSKTYGGGG--------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS--GEVLVDGEPVT- 69 (220)
T ss_pred CeEEEEEEEcCCCC--------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECc-
Confidence 57899999986421 11469999999999999999999999999999999999998876 99999999875
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
..++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.+ ++||||||||++
T Consensus 70 -~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~ 141 (220)
T cd03293 70 -GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ--GVPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVA 141 (220)
T ss_pred -cccCcEEEEecccccccCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHH
Confidence 24677999999999999999999999875433 2333445678899999999987666554 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEe--CCeEEEEcChh
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILA--RGQLMFQGPPK 247 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~g~~~ 247 (646)
||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|+ +|+++..++++
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999999999999999975 5899999999975 5778999999999 79999888653
No 54
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-44 Score=361.58 Aligned_cols=211 Identities=26% Similarity=0.496 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~v~~~g~~~~~ 66 (213)
T cd03301 1 VELENVTKRFGN------------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS--GRIYIGGRDVTD 66 (213)
T ss_pred CEEEeeEEEECC------------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECCc
Confidence 478999999853 259999999999999999999999999999999999999877 999999998743
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..++.+ +.||||||||+
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~ 139 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR--KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRV 139 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHH
Confidence 123467999999999999999999998875432 2344555678899999999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999874 899999999975 578899999999999999875
No 55
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.1e-45 Score=392.18 Aligned_cols=220 Identities=25% Similarity=0.444 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++|.+ |+|.++|+++.
T Consensus 3 ~L~~~nls~~y~~------------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s--G~I~l~G~~i~ 68 (402)
T PRK09536 3 MIDVSDLSVEFGD------------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA--GTVLVAGDDVE 68 (402)
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC--cEEEECCEEcC
Confidence 5899999999953 369999999999999999999999999999999999999977 99999999875
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC--HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS--WSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. ..+++.+|||+|+..+++.+||+||+.++...+..... .++.+++++++++.+|+.+..++.+ ++||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 3 34567899999999999999999999886432111111 2344578999999999987777654 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||+.|||+|+++|++|||||||+|||+.++.+++++|++++++|+|||+++|+++ ++.++||++++|++|++++.|+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999999888999999999975 5889999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 223 ~~ev~ 227 (402)
T PRK09536 223 PADVL 227 (402)
T ss_pred HHHHh
Confidence 98753
No 56
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=374.93 Aligned_cols=224 Identities=27% Similarity=0.450 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+... ...+.+|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~-------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 72 (287)
T PRK13637 2 SIKIENLTHIYMEGT-------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS--GKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEEECCCCC-------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc--cEEEECCEECC
Confidence 389999999996421 012469999999999999999999999999999999999999987 99999999875
Q ss_pred c-----ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCC
Q 039035 91 P-----SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT--TTRNTHIGDEGTRGV 162 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~L 162 (646)
. ...++.+|||+|++. .+...||+||+.+..... +.++++..++++++++.+||. +..++. ++.|
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~L 145 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL--GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFEL 145 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC--CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccC
Confidence 3 235678999999863 333579999999875432 345666677899999999996 444444 5689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||++||+||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. ++.++||++++|++|+++
T Consensus 146 SgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCE 224 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 999999999975 577899999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
+.|+++++..
T Consensus 225 ~~g~~~~~~~ 234 (287)
T PRK13637 225 LQGTPREVFK 234 (287)
T ss_pred EECCHHHHHh
Confidence 9999988753
No 57
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-44 Score=361.64 Aligned_cols=210 Identities=31% Similarity=0.557 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|+++.|++ +.+++|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (210)
T cd03269 1 LEVENVTKRFGR------------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS--GEVLFDGKPLDI 66 (210)
T ss_pred CEEEEEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCCchhH
Confidence 578999998853 359999999999999999999999999999999999999877 999999987753
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
..++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.+|+++..++.+ ++||||||||++
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~ 138 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK--GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQ 138 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHH
Confidence 45678999999999999999999998876543 2334455678899999999987666554 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999878999999999975 577899999999999998764
No 58
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=9.6e-45 Score=381.42 Aligned_cols=207 Identities=26% Similarity=0.454 Sum_probs=185.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc--ccccccEEEEccCCCCCCCCCH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP--SLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. ...++.+||++|++.+++.+||
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS--GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 469999999999999999999999999999999999999987 999999998743 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLD 193 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD 193 (646)
+||+.+.+.++ +.+.++.+++++++++.+||.+..++.+ ++|||||||||+||+||+.+|++|||||||+|||
T Consensus 84 ~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 84 RENLEMMGRLY--GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99999876543 2344555678999999999987777665 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHH
Q 039035 194 STSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 194 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 252 (646)
+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++...
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999888999999999975 68889999999999999999999887543
No 59
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.3e-44 Score=363.35 Aligned_cols=217 Identities=35% Similarity=0.543 Sum_probs=189.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++. ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~----------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 68 (220)
T cd03263 1 LQIRNLTKTYKKG----------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS--GTAYINGYSIRT 68 (220)
T ss_pred CEEEeeEEEeCCC----------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEeccc
Confidence 5789999998531 1469999999999999999999999999999999999999977 999999998743
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
..+++.++|++|++.+++.+||+||+.+....+ ..+..+.+++++++++.+||.+..++.+ ++||||||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 141 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLK--GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRK 141 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHH
Confidence 235677999999999999999999999876443 2334445567899999999987666654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999999976 599999999976 57789999999999999999987764
No 60
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=366.06 Aligned_cols=222 Identities=27% Similarity=0.463 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 1 ~i~~~~l~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 70 (233)
T cd03258 1 MIELKNVSKVFGDTG--------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS--GSVLVDGTDLT 70 (233)
T ss_pred CeEEecceEEccCCC--------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcc
Confidence 378999999986420 01269999999999999999999999999999999999999977 99999999874
Q ss_pred cc------cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS------LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++. ++.|||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA--GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSG 143 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCH
Confidence 31 23577999999999999999999998875433 233444566789999999998766655 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 899999999975 57889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 223 ~~~~~~~ 229 (233)
T cd03258 223 GTVEEVF 229 (233)
T ss_pred cCHHHHh
Confidence 9887653
No 61
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-45 Score=356.21 Aligned_cols=220 Identities=25% Similarity=0.503 Sum_probs=205.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|++++|++++.. +.+++|+||.++||++++++|||||||||.+++|.|++.|++ |+|.++|.+++
T Consensus 2 ~L~ie~vtK~Fg~------------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~--G~I~~~g~~~~ 67 (300)
T COG4152 2 ALEIEGVTKSFGD------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE--GEITWNGGPLS 67 (300)
T ss_pred ceEEecchhccCc------------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC--ceEEEcCcchh
Confidence 4789999999864 579999999999999999999999999999999999999987 99999999987
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
. ..+.+|||.|.+..|+|.+||.|.|.|.++++ ++++++.+++++.+|+++++......+| ++||.|++|++
T Consensus 68 ~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk--Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKI 139 (300)
T COG4152 68 Q-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK--GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKI 139 (300)
T ss_pred h-hhhhhcccChhhhccCccCcHHHHHHHHHHhc--CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHH
Confidence 4 45678999999999999999999999999875 6888999999999999999988777665 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
.+..+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+++|... .+.++||++++|++|+.|.+|+.+++.
T Consensus 140 QfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 140 QFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred HHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 589999999999999999999999998
Q ss_pred HHH
Q 039035 251 LHV 253 (646)
Q Consensus 251 ~~f 253 (646)
..|
T Consensus 219 ~~~ 221 (300)
T COG4152 219 RSF 221 (300)
T ss_pred Hhc
Confidence 754
No 62
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=368.30 Aligned_cols=220 Identities=32% Similarity=0.508 Sum_probs=187.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 67 (241)
T cd03256 1 IEVENLSKTYPNG-----------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS--GSVLIDGTDINK 67 (241)
T ss_pred CEEeeEEEecCCc-----------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC--ceEEECCEeccc
Confidence 4789999988531 359999999999999999999999999999999999998877 999999988642
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 92 ------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR------LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 92 ------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
...++.++|++|++.+++.+||+||+.+..... ......++..++++++++.+||.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 134577999999999999999999998754211 00111233456788999999997665554 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G 221 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDG 221 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999864 999999999976 577899999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (241)
T cd03256 222 RIVFDGPPAELT 233 (241)
T ss_pred EEEeecCHHHhh
Confidence 999999988753
No 63
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-44 Score=378.47 Aligned_cols=227 Identities=26% Similarity=0.396 Sum_probs=192.1
Q ss_pred CCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC
Q 039035 6 VDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD 85 (646)
Q Consensus 6 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 85 (646)
.+....|+++||++.|+.+.. ..+.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~-------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~--G~I~i~ 86 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQE-------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVG 86 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCc-------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CeEEEC
Confidence 333347999999999964210 12469999999999999999999999999999999999999987 999999
Q ss_pred CeeCCc-------------------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHc
Q 039035 86 GKETSP-------------------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQL 144 (646)
Q Consensus 86 g~~~~~-------------------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l 144 (646)
|.++.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~ 163 (320)
T PRK13631 87 DIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL--GVKKSEAKKLAKFYLNKM 163 (320)
T ss_pred CEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc--CCCHHHHHHHHHHHHHHc
Confidence 987632 13567899999986 4666 49999998875321 234555667889999999
Q ss_pred CCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 145 GLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 145 gL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
||. +..++ .+.+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++
T Consensus 164 gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~- 237 (320)
T PRK13631 164 GLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME- 237 (320)
T ss_pred CCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-
Confidence 996 34443 35689999999999999999999999999999999999999999999999878999999999975
Q ss_pred HHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 224 RIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 224 ~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
.+.++||++++|++|+++..|+++++.
T Consensus 238 ~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 238 HVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 577899999999999999999998774
No 64
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.8e-44 Score=361.77 Aligned_cols=216 Identities=28% Similarity=0.510 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+++. +...+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 ~l~~~~v~~~~~~~~--------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 70 (218)
T cd03266 1 MITADALTKRFRDVK--------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA--GFATVDGFDVV 70 (218)
T ss_pred CeEEEEEEEecCCCC--------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC--ceEEECCEEcc
Confidence 378999999996421 11269999999999999999999999999999999999999977 99999999875
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.+ +.|||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 143 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY--GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQ 143 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHH
Confidence 3 235678999999999999999999998865432 2334555678899999999987766654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999878999999999975 578899999999999998754
No 65
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.1e-44 Score=379.93 Aligned_cols=234 Identities=24% Similarity=0.339 Sum_probs=196.3
Q ss_pred ceEEEEeEEEEEeccccccccc-cccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTW-LKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
..|+++||+++|+.+......| ......+++|||++|++||+++|+|+||||||||+++|+|+++|++ |+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~--G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD--GEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC--cEEEECCEE
Confidence 4799999999996431100000 1123569999999999999999999999999999999999999876 999999998
Q ss_pred CCc------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 039035 89 TSP------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGT 159 (646)
Q Consensus 89 ~~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 159 (646)
+.. ..+++.++||+|++ .++|.+||.||+.+......+..++++.+++++++++.+||.+ .. +.++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~-----~~~p 159 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI-----NRYP 159 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh-----cCCc
Confidence 742 12467899999997 5899999999999875433223456667788999999999953 33 3456
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
++|||||||||+||+||+.+|++||+||||+|||..++.+++++|+++.++ |.|||++|||+. .+.++||++++|++|
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G 238 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLG 238 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999999875 999999999975 578899999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 239 ~ive~g~~~~i~~ 251 (331)
T PRK15079 239 HAVELGTYDEVYH 251 (331)
T ss_pred EEEEEcCHHHHHc
Confidence 9999999988753
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.8e-44 Score=365.80 Aligned_cols=219 Identities=27% Similarity=0.470 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 66 (240)
T PRK09493 1 MIEFKNVSKHFGP------------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS--GDLIVDGLKVN 66 (240)
T ss_pred CEEEEeEEEEECC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 3789999999853 359999999999999999999999999999999999999877 99999999875
Q ss_pred c-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. ...++.++|++|++.+++.+||+||+.+..... .....++..++++++++.+||++..++. ++.||||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G 140 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV-RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSGG 140 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHH
Confidence 2 234667999999999999999999998864211 1234445567789999999998666655 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 219 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGD 219 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCC
Confidence 999999999999999999999999999999999999999999878999999999975 5778999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 220 ~~~~~ 224 (240)
T PRK09493 220 PQVLI 224 (240)
T ss_pred HHHHh
Confidence 88764
No 67
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=373.92 Aligned_cols=222 Identities=27% Similarity=0.448 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.... ..+.+|+|||++|++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 72 (290)
T PRK13634 2 DITFQKVEHRYQYKTP-------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS--GTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEEECCCCc-------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--cEEEECCEECc
Confidence 3899999999964210 12469999999999999999999999999999999999999987 99999999874
Q ss_pred c-------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 039035 91 P-------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 160 (646)
. ...++.+|||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.+||. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF--GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1 23467899999986 355 469999999875432 244555667899999999996 445544 46
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||++. ++.++||++++|++|+
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 999999999975 5788999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
+++.|+++++.
T Consensus 224 i~~~g~~~~~~ 234 (290)
T PRK13634 224 VFLQGTPREIF 234 (290)
T ss_pred EEEECCHHHHh
Confidence 99999988864
No 68
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-45 Score=356.80 Aligned_cols=221 Identities=28% Similarity=0.468 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||++++.+ ..+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|++++
T Consensus 4 lL~v~~l~k~FGG------------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~--G~v~~~G~~it 69 (250)
T COG0411 4 LLEVRGLSKRFGG------------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS--GTVIFRGRDIT 69 (250)
T ss_pred eeeeccceeecCC------------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC--ceEEECCcccC
Confidence 5789999999864 479999999999999999999999999999999999999988 99999999986
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcc--------CCCC--CHHHHHHHHHHHHHHcCCCccccccccC
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFR--------LGPI--SWSDKKQRVENLVDQLGLTTTRNTHIGD 156 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 156 (646)
.. ..+..++--+|...+|++|||.||+..++..+ .+.. ..++..+++.++|+.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 42 24567889999999999999999999886533 1111 245667889999999999999998876
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
+||+|||||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++.|+.. .+..+||||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 5999999999999999999999999999999999999999999999998 4799999999975 689999999999
Q ss_pred eCCeEEEEcChhhHHH
Q 039035 236 ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 236 ~~G~iv~~g~~~~~~~ 251 (646)
+.|+++.+|+|+++..
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
No 69
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=375.15 Aligned_cols=223 Identities=22% Similarity=0.388 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+.. ....+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~--G~i~~~g~~~~ 72 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-------TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT--GTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEEECCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--cEEEEeceecc
Confidence 4899999999964310 12359999999999999999999999999999999999999977 99999987541
Q ss_pred ---------------------------cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 039035 91 ---------------------------PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVD 142 (646)
Q Consensus 91 ---------------------------~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~ 142 (646)
....++.+|||+|++ ..+...||+||+.|+.... +.+.++..++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~ 150 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM--GVSKEEAKKRAAKYIE 150 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc--CCCHHHHHHHHHHHHH
Confidence 123467899999985 2334579999999876432 3455666788999999
Q ss_pred HcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 039035 143 QLGLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQP 221 (646)
Q Consensus 143 ~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 221 (646)
.+||. +..++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++
T Consensus 151 ~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 151 LVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred HcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 99996 455544 568999999999999999999999999999999999999999999999988899999999996
Q ss_pred cHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 222 SSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 222 ~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
. .+.++||++++|++|++++.|+++++.
T Consensus 226 ~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 226 D-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred H-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5 578899999999999999999998875
No 70
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-44 Score=369.76 Aligned_cols=218 Identities=24% Similarity=0.398 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.|+.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 70 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR--GRVKVMGREVN 70 (274)
T ss_pred eEEEEEEEEEeCCC-----------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 68999999998531 359999999999999999999999999999999999999977 99999999875
Q ss_pred c---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.+|||+|++. .++..||.||+.|..... ..+.++.+++++++++.+||.+..++. +.+|||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~ 143 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQ 143 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHH
Confidence 3 234577999999963 455679999999865421 234455567889999999998766655 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++++|+|||++||+++ .+.++||++++|++|++++.|++
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999877999999999975 57789999999999999999998
Q ss_pred hhH
Q 039035 247 KEV 249 (646)
Q Consensus 247 ~~~ 249 (646)
+++
T Consensus 223 ~~~ 225 (274)
T PRK13647 223 SLL 225 (274)
T ss_pred HHh
Confidence 654
No 71
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.5e-44 Score=365.86 Aligned_cols=219 Identities=25% Similarity=0.426 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 68 (250)
T PRK11264 3 AIEVKNLVKKFHG------------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA--GTIRVGDITID 68 (250)
T ss_pred cEEEeceEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEEcc
Confidence 5899999999853 259999999999999999999999999999999999999877 99999998764
Q ss_pred c-----------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 91 P-----------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 91 ~-----------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
. ...++.++||+|++.+++.+||.||+.++.... .....++..++++++++.+||.+..++. +
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV-KGEPKEEATARARELLAKVGLAGKETSY-----P 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCcchhhCC-----h
Confidence 2 124567999999999999999999998754321 1233444566789999999998766554 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 679999999999999999999999999999999999999999999999888999999999975 5788999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
+++.|+++++.
T Consensus 222 i~~~~~~~~~~ 232 (250)
T PRK11264 222 IVEQGPAKALF 232 (250)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-44 Score=361.27 Aligned_cols=210 Identities=30% Similarity=0.526 Sum_probs=180.2
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++.+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~--------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~--G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGG--------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS--GEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCC--------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc--eeEEECCEehhh
Confidence 57899999996421 11469999999999999999999999999999999999999877 999999998642
Q ss_pred c-------cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 92 S-------LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 92 ~-------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ..++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.+||++..++.+ +.|||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA--GVPKKERRERAEELLERVGLGDRLNHYP-----SELSG 143 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCH
Confidence 1 13467999999999999999999999876543 2233445567899999999987665554 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. +||++++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999999987 59999999999764 55 8999999999974
No 73
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.6e-44 Score=361.64 Aligned_cols=215 Identities=29% Similarity=0.498 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 66 (222)
T cd03224 1 LEVENLNAGYGK------------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS--GSIRFDGRDITG 66 (222)
T ss_pred CEEeeEEeecCC------------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcCC
Confidence 578999998853 358999999999999999999999999999999999999977 999999988642
Q ss_pred c---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCChHH
Q 039035 92 S---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQL-GLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 ~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGe 166 (646)
. . .++.++|++|++.+++.+|++||+.+....+. ..+.+++++++++.+ ++.+..++. +++|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~ 137 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGE 137 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHH
Confidence 1 1 35679999999999999999999998754321 223345677888888 576655554 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++
T Consensus 138 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999878999999999975 57889999999999999999988
Q ss_pred hhHH
Q 039035 247 KEVT 250 (646)
Q Consensus 247 ~~~~ 250 (646)
+++.
T Consensus 217 ~~~~ 220 (222)
T cd03224 217 AELL 220 (222)
T ss_pred HHHh
Confidence 7653
No 74
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.3e-44 Score=383.36 Aligned_cols=207 Identities=23% Similarity=0.390 Sum_probs=185.7
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccc----cccEEEEccCCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLI----KRTSAYIMQEDRL 107 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~----~~~i~yv~Q~~~l 107 (646)
.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ..+ ++.++||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~--G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA--GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc--eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4569999999999999999999999999999999999999987 999999998753 223 6789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDE 187 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDE 187 (646)
+|.+||+||+.|...+. +.++++..+++.++++.+||++..+++ +++|||||||||+|||||+.+|++|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~--~~~~~~~~~~~~~~l~~vgL~~~~~~~-----p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL--GWPEQERKEKALELLKLVGLEEYEHRY-----PDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999986543 345666778899999999998766655 56899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~ 251 (646)
||+|||+.++..+.+.++++.++ |+|||++||++. ++.++||++++|++|+++..|+++++..
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 99999999999999999999764 999999999975 5788999999999999999999988753
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-44 Score=365.06 Aligned_cols=218 Identities=26% Similarity=0.484 Sum_probs=189.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|++. +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYGGG-----------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS--GEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeCCc-----------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCeEcCc
Confidence 4789999998631 359999999999999999999999999999999999999877 999999988642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCCCCCCCChHH
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT--TRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGe 166 (646)
...++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+ ..++. +++|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~ 140 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQ 140 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHH
Confidence 234678999999999999999999998875432 2334455677899999999975 44444 46899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|+
T Consensus 141 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 219 (242)
T cd03295 141 QQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGT 219 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 999999999975 5788999999999999999998
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 220 ~~~~~ 224 (242)
T cd03295 220 PDEIL 224 (242)
T ss_pred HHHHH
Confidence 87763
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.9e-44 Score=359.16 Aligned_cols=207 Identities=32% Similarity=0.525 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 66 (208)
T cd03268 1 LKTNDLTKTYGK------------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS--GEITFDGKSYQK 66 (208)
T ss_pred CEEEEEEEEECC------------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc--eEEEECCCcccc
Confidence 578999999853 359999999999999999999999999999999999999877 999999987643
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+||.+..++.+ +.|||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 135 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL--GI----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRL 135 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHH
Confidence 234567999999999999999999998875432 11 2356888999999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999888999999999975 577899999999999998765
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.1e-44 Score=367.27 Aligned_cols=220 Identities=29% Similarity=0.464 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~-----------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 67 (243)
T TIGR02315 1 MLEVENLSKVYPN-----------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS--GSILLEGTDIT 67 (243)
T ss_pred CeEEEeeeeecCC-----------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc--cEEEECCEEhh
Confidence 3789999998851 1359999999999999999999999999999999999999877 99999998864
Q ss_pred c------ccccccEEEEccCCCCCCCCCHHHHHHHHHHcc------CCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 91 P------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR------LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
. ..+++.++|++|++.+++.+||+||+.+..... .......+.+++++++++.+||.+..++.
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 2 124677999999999999999999998753210 00111233456789999999998666554
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 4579999999999999999999999999999999999999999999999764 899999999975 57789999999999
Q ss_pred CeEEEEcChhhH
Q 039035 238 GQLMFQGPPKEV 249 (646)
Q Consensus 238 G~iv~~g~~~~~ 249 (646)
|++++.|+++++
T Consensus 222 G~i~~~~~~~~~ 233 (243)
T TIGR02315 222 GEIVFDGAPSEL 233 (243)
T ss_pred CEEEecCCHHHh
Confidence 999999988765
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-44 Score=370.51 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 72 (279)
T PRK13650 4 IIEVKNLTFKYKED---------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES--GQIIIDGDLLT 72 (279)
T ss_pred eEEEEeEEEEcCCC---------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEECC
Confidence 68999999999642 12359999999999999999999999999999999999999987 99999999875
Q ss_pred c---ccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.+|||+|++ ..++..||+||+.|..... +.+.++..++++++++.+||++..++. +++|||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq 145 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK--GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQ 145 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC--CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHH
Confidence 3 23567899999997 4677789999999875432 345556667899999999998766655 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|++|+++..|+
T Consensus 146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 999999999976 45 5799999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 224 ~~~~~ 228 (279)
T PRK13650 224 PRELF 228 (279)
T ss_pred HHHHH
Confidence 98765
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.1e-43 Score=367.48 Aligned_cols=219 Identities=24% Similarity=0.436 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 72 (269)
T PRK11831 7 LVDMRGVSFTRGN------------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH--GEILFDGENIP 72 (269)
T ss_pred eEEEeCeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcc
Confidence 7999999999853 358999999999999999999999999999999999999877 99999998864
Q ss_pred cc------cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS------LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ..++.++|++|+..+++.+||.||+.+...... ..+.++.++++.++++.+||.+..++.+ +.|||
T Consensus 73 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 146 (269)
T PRK11831 73 AMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT-QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSG 146 (269)
T ss_pred ccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCH
Confidence 21 235679999999999999999999988643211 1234445567889999999987666654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999865 899999999965 57889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 226 g~~~~~~ 232 (269)
T PRK11831 226 GSAQALQ 232 (269)
T ss_pred CCHHHHh
Confidence 9988763
No 80
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1e-43 Score=363.21 Aligned_cols=217 Identities=26% Similarity=0.444 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----cceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-----SLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-----~~~G~I~~~ 85 (646)
.|+++||+++|++ +.+++|+|+++++||+++|+||||||||||+++|+|+.+|. + |+|.++
T Consensus 1 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~--G~i~~~ 66 (247)
T TIGR00972 1 AIEIENLNLFYGE------------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE--GKVLFD 66 (247)
T ss_pred CEEEEEEEEEECC------------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCc--eEEEEC
Confidence 3789999999853 25899999999999999999999999999999999999886 5 999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT----TTRNTHIGD 156 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 156 (646)
|+++.. ...++.++|++|++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++
T Consensus 67 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 140 (247)
T TIGR00972 67 GQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG-IKDKKELDEIVEESLKKAALWDEVKDRLHD---- 140 (247)
T ss_pred CEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCCcchhhHhhC----
Confidence 998742 234678999999999888 999999998754431 123445567889999999997 44443
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+++|++++|+
T Consensus 141 -~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 217 (247)
T TIGR00972 141 -SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY 217 (247)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE
Confidence 3568999999999999999999999999999999999999999999999987 499999999975 5788999999999
Q ss_pred CCeEEEEcChhhHH
Q 039035 237 RGQLMFQGPPKEVT 250 (646)
Q Consensus 237 ~G~iv~~g~~~~~~ 250 (646)
+|++++.|+++++.
T Consensus 218 ~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 218 DGELVEYGPTEQIF 231 (247)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 81
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.5e-44 Score=356.75 Aligned_cols=208 Identities=31% Similarity=0.525 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~-----------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~--G~i~~~g~~~~ 67 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR--GQVRIAGEDVN 67 (214)
T ss_pred CEEEEeeeEEeCC-----------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcc
Confidence 3789999999842 1359999999999999999999999999999999999998876 99999999874
Q ss_pred cc------cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS------LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. .+++.++|++|++.+++.+||.||+.+....+ ....++.+++++++++.+||.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 140 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR--GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSG 140 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCH
Confidence 21 24578999999999999999999999875432 233444567889999999998665554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 141 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 141 GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999999878999999999975 5788999999999985
No 82
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1e-43 Score=358.46 Aligned_cols=219 Identities=39% Similarity=0.657 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA---SGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~---~~~~~G~I~~~g~ 87 (646)
.+.++|+++++++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |++ |+|.++|+
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~--G~i~~~g~ 72 (226)
T cd03234 3 VLPWWDVGLKAKNWN--------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS--GQILFNGQ 72 (226)
T ss_pred cceeecceeeeecCc--------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCc--eEEEECCE
Confidence 467999999997531 13579999999999999999999999999999999999998 766 99999999
Q ss_pred eCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHH-HHHHcCCCccccccccCCCCCCCChH
Q 039035 88 ETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVEN-LVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 88 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
++.....++.++|++|++.+++.+||+||+.+........ ...+...+++++ .++.+++.+..++. ++.||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 147 (226)
T cd03234 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGG 147 (226)
T ss_pred ECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHH
Confidence 8765456788999999999999999999999876543221 122223345565 89999997665554 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999998789999999999855688999999999999998765
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.5e-44 Score=357.19 Aligned_cols=208 Identities=29% Similarity=0.516 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~i~~ 67 (214)
T cd03292 1 IEFINVTKTYPNG-----------TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS--GTIRVNGQDVSD 67 (214)
T ss_pred CEEEEEEEEeCCC-----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEccc
Confidence 4789999998532 359999999999999999999999999999999999999877 999999998642
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 92 ------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 92 ------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
...++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+||++..++. +++||||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 140 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT--GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGG 140 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHH
Confidence 124577999999999999999999999876542 233445567789999999998766655 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 141 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 141 EQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999878999999999975 57789999999999974
No 84
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-44 Score=348.27 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=189.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+..|.. .++|++||+++++||+++|+||||||||||||+|+|+.++.+ |+|.++|++++
T Consensus 3 mL~v~~l~~~YG~------------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~--G~I~~~G~dit 68 (237)
T COG0410 3 MLEVENLSAGYGK------------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS--GRIIFDGEDIT 68 (237)
T ss_pred ceeEEeEeecccc------------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eeEEECCeecC
Confidence 6899999999964 479999999999999999999999999999999999999876 99999999986
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCChH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-LTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgG 165 (646)
. +..+..++||||...+||.|||+|||..++..+.. +...+..++++.+.|- |.+.++++-| .||||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGG 140 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGG 140 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHChhHHHHhcCccc-----CCChH
Confidence 4 23577899999999999999999999987654321 1122222677777773 5666666655 69999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. ...+++||.++|.+|+++++|
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999976 789999998854 678999999999999999999
Q ss_pred ChhhHHH
Q 039035 245 PPKEVTL 251 (646)
Q Consensus 245 ~~~~~~~ 251 (646)
+.+++..
T Consensus 220 ~~~eL~~ 226 (237)
T COG0410 220 TAAELLA 226 (237)
T ss_pred CHHHHhc
Confidence 9998854
No 85
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-44 Score=356.96 Aligned_cols=204 Identities=29% Similarity=0.481 Sum_probs=175.8
Q ss_pred EEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc
Q 039035 13 GFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS 92 (646)
Q Consensus 13 ~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~ 92 (646)
+++||+++|++. +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~-----------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~ 67 (205)
T cd03226 1 RIENISFSYKKG-----------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS--GSILLNGKPIKAK 67 (205)
T ss_pred CcccEEEEeCCc-----------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEhhhH
Confidence 368999988531 359999999999999999999999999999999999999977 9999999987544
Q ss_pred cccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 93 LIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 93 ~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
..++.++|++|++. .+..+||+||+.+..... . +..++++++++.+||.+..++.+ ++||||||||++
T Consensus 68 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ 136 (205)
T cd03226 68 ERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL----D--AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLA 136 (205)
T ss_pred HhhcceEEEecChhhhhhhccHHHHHhhhhhhc----C--ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHH
Confidence 45678999999974 344679999998765321 1 11356889999999987666554 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999999888999999999975 577899999999999875
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=363.08 Aligned_cols=219 Identities=26% Similarity=0.486 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 68 (241)
T PRK10895 3 TLTAKNLAKAYKG------------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA--GNIIIDDEDIS 68 (241)
T ss_pred eEEEeCcEEEeCC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECC
Confidence 5899999999853 359999999999999999999999999999999999999877 99999999874
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.++|++|++.+++.+||.||+.+....+. ..+.++.+++++++++.+|+.+..++. ++.|||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 142 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD-DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGE 142 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc-ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHH
Confidence 3 1235679999999999999999999987643321 223344567789999999997655544 46799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
||||+||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||++||++. ++.++||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCH
Confidence 99999999999999999999999999999999999999999888999999999975 57889999999999999999998
Q ss_pred hhHH
Q 039035 247 KEVT 250 (646)
Q Consensus 247 ~~~~ 250 (646)
+++.
T Consensus 222 ~~~~ 225 (241)
T PRK10895 222 TEIL 225 (241)
T ss_pred HHHh
Confidence 7763
No 87
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=364.49 Aligned_cols=220 Identities=24% Similarity=0.404 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~ 69 (257)
T PRK10619 4 NKLNVIDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE--GSIVVNGQTI 69 (257)
T ss_pred ccEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEEc
Confidence 47999999999953 359999999999999999999999999999999999999877 9999999876
Q ss_pred Cc----------------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-cc
Q 039035 90 SP----------------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-NT 152 (646)
Q Consensus 90 ~~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~ 152 (646)
.. ..+++.++|++|++.+++.+||+||+.++... ......++.++++.++++.+|+.+.. ++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLGLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 31 13457899999999999999999999875421 11233445567889999999997643 43
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeE
Q 039035 153 HIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 153 ~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 232 (646)
.+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++
T Consensus 149 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i 222 (257)
T PRK10619 149 -----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 222 (257)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 34689999999999999999999999999999999999999999999999888999999999975 577899999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 039035 233 IILARGQLMFQGPPKEVT 250 (646)
Q Consensus 233 ~~L~~G~iv~~g~~~~~~ 250 (646)
++|++|++++.|+++++.
T Consensus 223 ~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 223 IFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEECCEEEEeCCHHHhh
Confidence 999999999999987764
No 88
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=358.82 Aligned_cols=217 Identities=26% Similarity=0.401 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~i~ 74 (233)
T PRK11629 5 LLQCDNLCKRYQEGS--------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS--GDVIFNGQPMS 74 (233)
T ss_pred eEEEEeEEEEcCCCC--------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEcC
Confidence 699999999996421 12469999999999999999999999999999999999999877 99999999874
Q ss_pred cc------cc-cccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 PS------LI-KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~------~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
.. .. ++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++. +++||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 147 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG--KKKPAEINSRALEMLAAVGLEHRANHR-----PSELS 147 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 31 12 257999999999999999999999875432 233445567889999999998766554 45799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +.. +|++++|++|+++.
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~ 225 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976 59999999999764 554 58999999999998
Q ss_pred EcCh
Q 039035 243 QGPP 246 (646)
Q Consensus 243 ~g~~ 246 (646)
.++.
T Consensus 226 ~~~~ 229 (233)
T PRK11629 226 ELSL 229 (233)
T ss_pred Eecc
Confidence 8764
No 89
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=369.14 Aligned_cols=222 Identities=25% Similarity=0.438 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||++.|+++.. ..+.+|+|||++|++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~--G~i~~~g~~i~ 72 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT--GTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEEECCCCc-------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEECc
Confidence 3899999999964210 12469999999999999999999999999999999999999987 99999999874
Q ss_pred c-------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 039035 91 P-------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 160 (646)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF--KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PF 144 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 13567899999986 4555 49999999875432 245556677899999999996 455544 46
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.++|+++++ .|+|||++||++. ++.++||++++|++|+
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGS 223 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999986 4999999999975 5778999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
+++.|+++++.
T Consensus 224 i~~~g~~~~~~ 234 (286)
T PRK13646 224 IVSQTSPKELF 234 (286)
T ss_pred EEEECCHHHHH
Confidence 99999988764
No 90
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.9e-43 Score=358.92 Aligned_cols=218 Identities=29% Similarity=0.508 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~i~ 66 (236)
T TIGR03864 1 ALEVAGLSFAYGA------------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE--GQISVAGHDLR 66 (236)
T ss_pred CEEEEeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc--eEEEECCEEcc
Confidence 4789999999853 359999999999999999999999999999999999999977 99999998764
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.+ +.|||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~q 139 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH--GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRR 139 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 2 123357999999999889999999998765432 2334445567899999999987666554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
|++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|++++|++|++++.|+++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~ 217 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAA 217 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999985 58999999999864 54 59999999999999999987
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 218 ~~~~ 221 (236)
T TIGR03864 218 ELRG 221 (236)
T ss_pred HHHH
Confidence 7653
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-44 Score=368.06 Aligned_cols=206 Identities=26% Similarity=0.428 Sum_probs=180.5
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---cc----ccccEEEEccCCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SL----IKRTSAYIMQEDRL 107 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l 107 (646)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.. .. .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~--G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS--GKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 4568999999999999999999999999999999999999977 999999988642 11 23579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDE 187 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDE 187 (646)
++.+||+||+.+..... .....+..++++++++.+||.+..++.+ ++||||||||++||++|+.+|++|||||
T Consensus 114 ~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ--GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999875432 2334445567899999999987666654 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999764 899999999975 578899999999999999999987764
No 92
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-43 Score=354.97 Aligned_cols=208 Identities=27% Similarity=0.471 Sum_probs=181.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (213)
T cd03262 1 IEIKNLHKSFGD------------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS--GTIIIDGLKLTD 66 (213)
T ss_pred CEEEEEEEEECC------------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEECCc
Confidence 478999999853 359999999999999999999999999999999999999877 999999998732
Q ss_pred -----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 92 -----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 -----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
...++.++|++|++.+++.+|++||+.+..... .....++.+++++++++.+|+.+..++. +++|||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 140 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-KGMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQ 140 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh-cCCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHH
Confidence 234678999999999999999999998864311 1233445566789999999998766655 45799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999888999999999975 57889999999999974
No 93
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=367.86 Aligned_cols=222 Identities=27% Similarity=0.462 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 2 ~i~~~~l~~~~~~~~~-------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 72 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS--GTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEEcCCCCC-------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEECc
Confidence 4789999999963210 02469999999999999999999999999999999999999987 99999999864
Q ss_pred c-------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCC
Q 039035 91 P-------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 160 (646)
. ...++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||+ +..++. ++
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF--GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 2 23456799999996 345 579999998865432 234455667899999999996 455555 45
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999999999999999878999999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (287)
T PRK13641 224 IKHASPKEIF 233 (287)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 94
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.7e-43 Score=357.05 Aligned_cols=217 Identities=25% Similarity=0.409 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 1 ~l~~~~v~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 70 (228)
T cd03257 1 LLEVKNLSVSFPTGG--------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS--GSIIFDGKDLL 70 (228)
T ss_pred CeEEEeeeEeccCCC--------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcc
Confidence 378999999985421 11259999999999999999999999999999999999999877 99999999874
Q ss_pred c------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCCCCC
Q 039035 91 P------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQR-VENLVDQLGLT-TTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~ 160 (646)
. ..+++.++|++|++ .+++.+||+||+.+....... ...++..+. ++++++.+++. +..++. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 23467899999998 467789999999886543211 112222222 36889999995 444544 45
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~ 223 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGK 223 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCE
Confidence 79999999999999999999999999999999999999999999999876 899999999975 5777999999999999
Q ss_pred EEEEc
Q 039035 240 LMFQG 244 (646)
Q Consensus 240 iv~~g 244 (646)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 98654
No 95
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=361.59 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|+ ..+|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 7 IIETENLNLFYTD------------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred eEEEeeeEEEeCC------------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 7999999999853 25999999999999999999999999999999999999864 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT----TTRNTHIGDEG 158 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~ 158 (646)
++.. ...++.++|++|++.+++ +||+||+.+....+ ......+.+++++++++.+++. +..++ .
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~ 147 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH-GTKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----N 147 (254)
T ss_pred ecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----C
Confidence 8632 235678999999988885 89999999875432 1123344567788999999884 22333 4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+++||||||||++||++|+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++. ++.+++|++++|++|
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G 225 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNG 225 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999964 799999999976 577899999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
+++..|+++++.
T Consensus 226 ~i~~~g~~~~~~ 237 (254)
T PRK14273 226 CIEEESSTDELF 237 (254)
T ss_pred EEEEeCCHHHHH
Confidence 999999988874
No 96
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-43 Score=359.74 Aligned_cols=216 Identities=25% Similarity=0.453 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~ 70 (237)
T PRK11614 5 MLSFDKVSAHYGK------------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS--GRIVFDGKDIT 70 (237)
T ss_pred EEEEEeEEEeeCC------------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC--ceEEECCEecC
Confidence 6899999999853 359999999999999999999999999999999999999977 99999999864
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHc-CCCccccccccCCCCCCCChH
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQL-GLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgG 165 (646)
.. ..++.++|++|++.+++.+||.||+.+..... ..++..++++++++.+ ++.+..++. ++.||||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 141 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGG 141 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHH
Confidence 31 24567999999999999999999998864321 1233345677788887 476555444 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 142 EQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCC
Confidence 999999999999999999999999999999999999999999888999999999975 5789999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 221 ~~~~~ 225 (237)
T PRK11614 221 GDALL 225 (237)
T ss_pred HHHHh
Confidence 88774
No 97
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-43 Score=366.34 Aligned_cols=220 Identities=28% Similarity=0.492 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~-----------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~--G~i~i~g~~~~ 71 (283)
T PRK13636 5 ILKVEELNYNYSDG-----------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS--GRILFDGKPID 71 (283)
T ss_pred eEEEEeEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--cEEEECCEECC
Confidence 79999999999521 359999999999999999999999999999999999999977 99999999873
Q ss_pred c-----ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P-----SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ..+++.+||++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~ 144 (283)
T PRK13636 72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL--KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSF 144 (283)
T ss_pred CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCH
Confidence 1 235678999999973 334579999998865422 234555567899999999998766655 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|++++.
T Consensus 145 G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 999999999975 57789999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 224 g~~~~~~~ 231 (283)
T PRK13636 224 GNPKEVFA 231 (283)
T ss_pred CCHHHHhc
Confidence 99988653
No 98
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.2e-43 Score=373.14 Aligned_cols=229 Identities=24% Similarity=0.371 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~ 89 (646)
.|+++||++.|..+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ ..+|+|.++|+++
T Consensus 12 ~L~i~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i 83 (330)
T PRK09473 12 LLDVKDLRVTFSTPD--------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI 83 (330)
T ss_pred eEEEeCeEEEEecCC--------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEEC
Confidence 799999999996431 1346999999999999999999999999999999999999885 1149999999987
Q ss_pred Cc---cc---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 90 SP---SL---IK-RTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 90 ~~---~~---~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
.. .. +| +.++||+|++ .++|.+|+.+++.+...... ..+.++..+++.++++.+||.+..+. .+.+++
T Consensus 84 ~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~ 160 (330)
T PRK09473 84 LNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPH 160 (330)
T ss_pred CcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcc
Confidence 42 11 22 4799999998 68999999999987654321 24555666789999999999753322 245678
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+|||||||||+||+||+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||+. .+.+++|++++|++|+
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGR 239 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999875 999999999975 5778999999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 240 ive~g~~~~i~~ 251 (330)
T PRK09473 240 TMEYGNARDVFY 251 (330)
T ss_pred EEEECCHHHHHh
Confidence 999999988854
No 99
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=372.90 Aligned_cols=229 Identities=24% Similarity=0.336 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--cceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG--SLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G~I~~~g~~ 88 (646)
.|+++||++.|+.+. +...+|+||||+|++||+++|+||||||||||+++|+|++++. ..+|+|.++|++
T Consensus 3 ~L~v~~l~~~~~~~~--------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 3 LLNVDKLSVHFGDES--------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred eEEEeCeEEEECCCC--------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 589999999996431 1246999999999999999999999999999999999998742 135999999998
Q ss_pred CCc---cc----ccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 89 TSP---SL----IKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 89 ~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+.. .. .++.++||+|++ .+.|.+||.+++........ +...++.++++.++++.+||.+..+ ..+.++
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p 151 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ-GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYP 151 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 742 11 224699999998 58999999999877654321 2345566788999999999975321 123457
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
++|||||||||+||+||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||+. .+.+++|+|++|++|
T Consensus 152 ~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G 230 (326)
T PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAG 230 (326)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999986 5999999999975 577899999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 231 ~ive~g~~~~~~~ 243 (326)
T PRK11022 231 QVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCHHHHhh
Confidence 9999999988753
No 100
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-43 Score=354.31 Aligned_cols=209 Identities=31% Similarity=0.516 Sum_probs=182.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+||++++| +++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 i~~~~~~~~~~~------------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 65 (211)
T cd03264 1 LQLENLTKRYGK------------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLK 65 (211)
T ss_pred CEEEEEEEEECC------------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc--cEEEECCCcccc
Confidence 578999998853 25999999999999 999999999999999999999999977 999999987642
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
...++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ ++||||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK--GIPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRR 138 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHH
Confidence 234678999999999999999999999866543 2333445667899999999987666554 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|++++.|
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999986 599999999975 577899999999999998765
No 101
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-44 Score=361.52 Aligned_cols=232 Identities=24% Similarity=0.375 Sum_probs=203.9
Q ss_pred ceEEEEeEEEEEecccccc------cc------ccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc
Q 039035 10 GGLGFSNLTYTVTKKKKIE------GT------WLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS 77 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~------~~------~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~ 77 (646)
..|+++|+++-+.++.+.. +. ...+-..-++|+|++++.||+..|||-||||||||+++|.+++.|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3689999999887643221 10 01122457899999999999999999999999999999999999988
Q ss_pred ceeEEEECCeeCCc---c---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc
Q 039035 78 LKGKVTLDGKETSP---S---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR 150 (646)
Q Consensus 78 ~~G~I~~~g~~~~~---~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 150 (646)
|+|+++|+++.. . . .++++++|+|+..|+|+.||.||..|+.+++ +.+++++++++.++|+.+||+...
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~--Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ--GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec--CCCHHHHHHHHHHHHHHcCchhhh
Confidence 999999998742 1 2 3567999999999999999999999998765 688999999999999999999887
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhc
Q 039035 151 NTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 151 ~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~ 229 (646)
+.+ |++|||||||||.|||||+++|+||++|||+|+|||--+.++-+.|.+|.++ ++|||++|||.+ +..++.
T Consensus 159 ~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG 232 (386)
T COG4175 159 DKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIG 232 (386)
T ss_pred hcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhcc
Confidence 765 6789999999999999999999999999999999999999999999999764 899999999975 678999
Q ss_pred CeEEEEeCCeEEEEcChhhHHH
Q 039035 230 DHLIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 230 D~v~~L~~G~iv~~g~~~~~~~ 251 (646)
|||.+|++|++|..|+|+|+..
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999975
No 102
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=360.28 Aligned_cols=225 Identities=27% Similarity=0.417 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ..+|+|.++|+
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 3 KIEIRDLKVSFGQ------------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred eEEEEeeEEEECC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 5899999999853 35899999999999999999999999999999999998742 12499999999
Q ss_pred eCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 88 ETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 88 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
++.. ..+++.+||++|++.+++.+||+||+.+....+......++..++++++++.+||.+..+.. -+..+.+|||
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 149 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSG 149 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCH
Confidence 8742 24567899999999889999999999987543211113345567789999999986421111 1334568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|+++..|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999999999999965 899999999975 577899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14247 228 PTREVF 233 (250)
T ss_pred CHHHHH
Confidence 988764
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-43 Score=359.49 Aligned_cols=217 Identities=26% Similarity=0.409 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 67 (242)
T PRK11124 2 SIQLNGINCFYGA------------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS--GTLNIAGNHFD 67 (242)
T ss_pred EEEEEeeEEEECC------------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEecc
Confidence 4889999999853 259999999999999999999999999999999999999877 99999999762
Q ss_pred c---------ccccccEEEEccCCCCCCCCCHHHHHHHH-HHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 91 P---------SLIKRTSAYIMQEDRLFPMLTVFETLMFA-ADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~---------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
. ...++.++|++|++.+++.+||.||+.+. .... +...++..++++++++.+||++..++.+ +
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 140 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLERLRLKPYADRFP-----L 140 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 1 13456799999999999999999999753 2221 2233445567899999999987666554 5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++
T Consensus 141 ~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHI 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 79999999999999999999999999999999999999999999999878999999999975 57789999999999999
Q ss_pred EEEcChhhH
Q 039035 241 MFQGPPKEV 249 (646)
Q Consensus 241 v~~g~~~~~ 249 (646)
++.|+++++
T Consensus 220 ~~~~~~~~~ 228 (242)
T PRK11124 220 VEQGDASCF 228 (242)
T ss_pred EEeCCHHHh
Confidence 999987764
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-43 Score=365.58 Aligned_cols=219 Identities=25% Similarity=0.395 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+.. .+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~~----------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~--G~i~~~g~~i~ 72 (279)
T PRK13635 5 IIRVEHISFRYPDA----------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA--GTITVGGMVLS 72 (279)
T ss_pred eEEEEEEEEEeCCC----------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--cEEEECCEECC
Confidence 68999999999532 2359999999999999999999999999999999999999987 99999999875
Q ss_pred c---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.+||++|++. +++..||.||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~ 145 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQ 145 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC--CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHH
Confidence 3 234678999999973 677789999998875432 2344555678999999999987766654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999876 8999999999764 55 599999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 224 ~~~~~ 228 (279)
T PRK13635 224 PEEIF 228 (279)
T ss_pred HHHHh
Confidence 88765
No 105
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=361.20 Aligned_cols=213 Identities=26% Similarity=0.412 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 66 (255)
T PRK11248 1 MLQISHLYADYGG------------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH--GSITLDGKPVE 66 (255)
T ss_pred CEEEEEEEEEeCC------------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECC
Confidence 3789999999853 359999999999999999999999999999999999999977 99999999875
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
. .++.++|++|++.+++.+||+||+.+....+ +....+..++++++++.+||.+..++. +.+||||||||+
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl 137 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA--GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRV 137 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHH
Confidence 3 2346899999999999999999998865432 233445567889999999998766554 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEe--CCeEEEEcChh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILA--RGQLMFQGPPK 247 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~--~G~iv~~g~~~ 247 (646)
+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+ +|+++..++.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999999999965 5899999999975 5788999999998 59999887654
No 106
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=360.56 Aligned_cols=225 Identities=24% Similarity=0.396 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 4 AIETVNLRVYYGS------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred eEEEEeEEEEeCC------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 6899999999853 25999999999999999999999999999999999999874 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++.+||.||+.+....+......++..++++++++.+|+.+..... -+..+++|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 150 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNL 150 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhC
Confidence 8741 23567899999999999999999999987543211112344456788999999985321111 13345789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 699999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 229 ~~~~~~~~ 236 (253)
T PRK14267 229 VGPTRKVF 236 (253)
T ss_pred eCCHHHHH
Confidence 99988764
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.7e-43 Score=354.36 Aligned_cols=210 Identities=26% Similarity=0.411 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~i~ 67 (222)
T PRK10908 1 MIRFEHVSKAYLGG-----------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA--GKIWFSGHDIT 67 (222)
T ss_pred CEEEEeeEEEecCC-----------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEcc
Confidence 37899999998421 359999999999999999999999999999999999999877 99999998764
Q ss_pred c---c---cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P---S---LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~---~---~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. . .+++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+|+.+..++. ++.|||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 140 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA--GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSG 140 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCH
Confidence 2 1 24678999999999889999999998865432 234445556788999999998766554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999999999999878999999999975 577899999999999975
No 108
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-43 Score=363.87 Aligned_cols=218 Identities=25% Similarity=0.379 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 66 (271)
T PRK13638 1 MLATSDLWFRYQD------------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK--GAVLWQGKPLD 66 (271)
T ss_pred CeEEEEEEEEcCC------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc--cEEEECCEEcc
Confidence 4789999999853 359999999999999999999999999999999999999977 99999999863
Q ss_pred c-----ccccccEEEEccCCCC-CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P-----SLIKRTSAYIMQEDRL-FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ...++.++||+|++.. +...|+.||+.+..... +...++..++++++++.+||.+..++. ++.|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 139 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL--GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSH 139 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCH
Confidence 1 1345679999999753 34568999998865432 233445556788999999998766655 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|
T Consensus 140 G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999877999999999975 577899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 988764
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=364.07 Aligned_cols=218 Identities=27% Similarity=0.426 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+++ +.+|+||||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++|.++.
T Consensus 1 ml~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 67 (274)
T PRK13644 1 MIRLENVSYSYPDG-----------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK--GKVLVSGIDTG 67 (274)
T ss_pred CEEEEEEEEEcCCC-----------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEECC
Confidence 37899999998531 359999999999999999999999999999999999999877 99999999874
Q ss_pred c----ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P----SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. ...++.+||++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+ +.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G 140 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL--CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGG 140 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHH
Confidence 2 234678999999975 366689999998865432 2345555678899999999987666554 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++ ..||++++|++|++++.|+
T Consensus 141 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~ 218 (274)
T PRK13644 141 QGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGE 218 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999878999999999976 45 5699999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 219 ~~~~~ 223 (274)
T PRK13644 219 PENVL 223 (274)
T ss_pred HHHHh
Confidence 88764
No 110
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-43 Score=364.21 Aligned_cols=222 Identities=26% Similarity=0.429 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~--G~i~~~g~~i~ 72 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ--GSVRVDDTLIT 72 (280)
T ss_pred eEEEEEEEEEcCCCCc-------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEcc
Confidence 3789999999964210 11359999999999999999999999999999999999999977 99999999864
Q ss_pred c-------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCC
Q 039035 91 P-------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTR 160 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 160 (646)
. ..+++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||.+ ..++. ++
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF--GVSQEEAEALAREKLALVGISESLFEKN-----PF 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 23467799999996 4555 69999998865432 2334455667889999999963 44444 45
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKL 223 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999999999999999877999999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (280)
T PRK13649 224 VLSGKPKDIF 233 (280)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 111
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-43 Score=371.03 Aligned_cols=230 Identities=21% Similarity=0.307 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+.+.... .....+.+|+|||++|++||+++|+|+||||||||+++|+|+++|.+ |+|.++|+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~--~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~--G~i~~~g~~l~ 80 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF--KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG--GELYYQGQDLL 80 (327)
T ss_pred eEEEeeeEEEEcCCCCcc--ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC--cEEEECCEEcC
Confidence 699999999996431100 00113569999999999999999999999999999999999998876 99999999874
Q ss_pred c------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCC
Q 039035 91 P------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 161 (646)
. ..+++.++||+|++ .+.|.+||.+++.+...... ...+++.++++.++++.+||.+ ..+ .++++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~ 154 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-SLSAAERREKALAMMAKVGLRPEHYD-----RYPHM 154 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHCCCChHHhc-----CCCcc
Confidence 2 13567899999997 58999999999987654321 2345566778999999999963 333 45678
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+||+||+.+|++||+||||+|||..++.+++++|++++++ |.|||++|||.. .+.++||++++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 999999999965 57789999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|+++++..
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999988754
No 112
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=358.98 Aligned_cols=228 Identities=25% Similarity=0.421 Sum_probs=197.5
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-C-C-cceeEEEECCee
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-S-G-SLKGKVTLDGKE 88 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~-~-~~~G~I~~~g~~ 88 (646)
|+++||+.+|.... +...+++||||++++||++||+|.|||||||+.++|.|+++ + . ..+|+|.++|++
T Consensus 2 L~v~nL~v~f~~~~--------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~ 73 (316)
T COG0444 2 LEVKNLSVSFPTDA--------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKD 73 (316)
T ss_pred ceEeeeEEEEecCC--------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcc
Confidence 78999999997642 23579999999999999999999999999999999999997 3 2 346999999997
Q ss_pred CC---cc---cc-cccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 89 TS---PS---LI-KRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPI-SWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~---~~---~~-~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
+- .+ .+ .+.|+||+|++ .|.|.+||.+.+.-...... .. ++++.++++.++|+.+||.+.. .+.+.+
T Consensus 74 l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~-~~~~~~ea~~~a~~~L~~Vgi~~~~--~~~~~Y 150 (316)
T COG0444 74 LLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG-KGLSKKEAKERAIELLELVGIPDPE--RRLKSY 150 (316)
T ss_pred cccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHcCCCCHH--HHHhhC
Confidence 53 22 22 35799999997 58999999999988766432 12 4566788999999999998643 244678
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|++|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||.. .+.++||||.+|..
T Consensus 151 PhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYa 229 (316)
T COG0444 151 PHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYA 229 (316)
T ss_pred CcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEEC
Confidence 999999999999999999999999999999999999999999999999997 6999999999975 68999999999999
Q ss_pred CeEEEEcChhhHHH
Q 039035 238 GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 G~iv~~g~~~~~~~ 251 (646)
|++|+.|+++++..
T Consensus 230 G~iVE~g~~~~i~~ 243 (316)
T COG0444 230 GRIVEEGPVEEIFK 243 (316)
T ss_pred cEEEEeCCHHHHhc
Confidence 99999999998864
No 113
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-43 Score=359.12 Aligned_cols=224 Identities=24% Similarity=0.392 Sum_probs=186.8
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----CCcceeEE
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-----SGSLKGKV 82 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-----~~~~~G~I 82 (646)
.+..|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.. |++ |+|
T Consensus 3 ~~~~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~--G~i 68 (253)
T PRK14242 3 SPPKMEARGLSFFYGD------------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE--GEI 68 (253)
T ss_pred CCcEEEEeeeEEEECC------------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCc--eEE
Confidence 3557999999999953 259999999999999999999999999999999999864 344 999
Q ss_pred EECCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 039035 83 TLDGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDE 157 (646)
Q Consensus 83 ~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 157 (646)
.++|+++.. ..+++.++|++|++.+++ .||+||+.+....+. ....++.+++++++++.+|+.+...... +.
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 145 (253)
T PRK14242 69 LLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG-VKDKAYLAERVERSLRHAALWDEVKDRL-HE 145 (253)
T ss_pred EECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCchhhhHHh-hC
Confidence 999988742 134678999999998888 499999998754321 1223344677889999999854221111 33
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 158 GTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
.++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~ 223 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM 223 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC
Confidence 4578999999999999999999999999999999999999999999999964 799999999975 57789999999999
Q ss_pred CeEEEEcChhhHH
Q 039035 238 GQLMFQGPPKEVT 250 (646)
Q Consensus 238 G~iv~~g~~~~~~ 250 (646)
|+++..|+++++.
T Consensus 224 G~i~~~g~~~~~~ 236 (253)
T PRK14242 224 GKLIEVGPTEQIF 236 (253)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887763
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.4e-43 Score=353.35 Aligned_cols=211 Identities=29% Similarity=0.464 Sum_probs=179.7
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++. ..+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|.+ |+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~--------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~ 71 (221)
T TIGR02211 2 LKCENLGKRYQEGK--------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS--GEVLFNGQSLSK 71 (221)
T ss_pred EEEEeeeEEccCCC--------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEhhh
Confidence 78999999996421 12469999999999999999999999999999999999999877 999999998642
Q ss_pred ---cc---cc-ccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 92 ---SL---IK-RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 92 ---~~---~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ++ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 144 (221)
T TIGR02211 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG--KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSG 144 (221)
T ss_pred cCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCH
Confidence 11 22 57999999999999999999999865432 223344456788999999998666554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+. .+|++++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999999864 899999999976 454 58999999999975
No 115
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4e-43 Score=359.96 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=188.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~i~~ 66 (252)
T TIGR03005 1 VRFSDVTKRFGI------------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE--GQIQVEGEQLYH 66 (252)
T ss_pred CEEEEEEEEeCC------------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEccc
Confidence 578999999853 359999999999999999999999999999999999999877 999999987632
Q ss_pred ----------------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 039035 92 ----------------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG 155 (646)
Q Consensus 92 ----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 155 (646)
..+++.++|++|++.+++..||.||+.++.... .....++..++++++++.+|+.+..++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~-- 143 (252)
T TIGR03005 67 MPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-LGMARAEAEKRAMELLDMVGLADKADHM-- 143 (252)
T ss_pred cccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhHhhcC--
Confidence 134678999999999999999999998864321 1233445566789999999998665544
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++
T Consensus 144 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 219 (252)
T TIGR03005 144 ---PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCF 219 (252)
T ss_pred ---hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 4679999999999999999999999999999999999999999999999875 999999999975 57789999999
Q ss_pred EeCCeEEEEcChhhHH
Q 039035 235 LARGQLMFQGPPKEVT 250 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~ 250 (646)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 220 FDKGRIVEQGKPDEIF 235 (252)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999887764
No 116
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=4.1e-43 Score=357.73 Aligned_cols=220 Identities=25% Similarity=0.364 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEECCeeC
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLDGKET 89 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~g~~~ 89 (646)
|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++ |+|.++|+++
T Consensus 1 l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~--G~i~~~g~~~ 66 (243)
T TIGR01978 1 LKIKDLHVSVED------------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTS--GTILFKGQDL 66 (243)
T ss_pred CeEeeEEEEECC------------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc--ceEEECCEec
Confidence 578999999853 35999999999999999999999999999999999995 5666 9999999986
Q ss_pred Cc---cc-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCC-----CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCC
Q 039035 90 SP---SL-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG-----PISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 159 (646)
.. .. .+..++|++|++.+++.+|++|++.+....... ..+..+..++++++++.+||. +..++.+.
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 142 (243)
T TIGR01978 67 LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN---- 142 (243)
T ss_pred CCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----
Confidence 42 12 234589999999999999999999886543211 012234456789999999997 34454432
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh-cCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL-LDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G 238 (646)
.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... ||++++|++|
T Consensus 143 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 143 EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDG 221 (243)
T ss_pred cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCC
Confidence 249999999999999999999999999999999999999999999999888999999999975 56777 8999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
++++.|+++++.
T Consensus 222 ~i~~~g~~~~~~ 233 (243)
T TIGR01978 222 RIVKSGDVELAK 233 (243)
T ss_pred EEEEecCHHHhc
Confidence 999999987554
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.6e-43 Score=356.66 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~ 67 (242)
T TIGR03411 2 ILYLEGLSVSFDG------------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE--GSVLFGGTDLT 67 (242)
T ss_pred eEEEEeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CeEEECCeecC
Confidence 4789999999853 359999999999999999999999999999999999999977 99999998764
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG------PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
.. ..++.++|++|++.+++.+||+||+.+....... ....++.+++++++++.+|+.+..++.+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1245699999999999999999999886432110 0122344567899999999987666554 5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSV 220 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeE
Confidence 7999999999999999999999999999999999999999999999976 799999999975 58889999999999999
Q ss_pred EEEcChhhH
Q 039035 241 MFQGPPKEV 249 (646)
Q Consensus 241 v~~g~~~~~ 249 (646)
+..|+++++
T Consensus 221 ~~~~~~~~~ 229 (242)
T TIGR03411 221 LAEGSLDQV 229 (242)
T ss_pred EeeCCHHHH
Confidence 999988775
No 118
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-43 Score=360.68 Aligned_cols=218 Identities=30% Similarity=0.444 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--G~i~~~g~~~~ 67 (258)
T PRK13548 2 MLEARNLSVRLGG------------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS--GEVRLNGRPLA 67 (258)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CEEEECCEEcc
Confidence 4889999999853 359999999999999999999999999999999999999877 99999998764
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ...++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ .+||||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~ 140 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQ 140 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc--CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHH
Confidence 2 234567999999998888899999998864321 1222334567889999999987666654 57999999
Q ss_pred HHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 168 RRVSIGVDII------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 168 qRv~ia~~L~------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||++++|++|++
T Consensus 141 qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999 5999999999999999999999999999998 67999999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 220 ~~~~~~~~~~ 229 (258)
T PRK13548 220 VADGTPAEVL 229 (258)
T ss_pred EeeCCHHHHh
Confidence 9999887653
No 119
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=363.72 Aligned_cols=219 Identities=28% Similarity=0.440 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||+++|+.. +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 69 (277)
T PRK13652 3 LIETRDLCYSYSGS-----------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS--GSVLIRGEPIT 69 (277)
T ss_pred eEEEEEEEEEeCCC-----------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 48899999999532 249999999999999999999999999999999999999977 99999999874
Q ss_pred c---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.++||+|++. .+...||.||+.+..... ..+.++.+++++++++.+||.+..++.+ +.|||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq 142 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGE 142 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHH
Confidence 2 245678999999974 334579999998765422 2344555678899999999987666654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999975 5778999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 222 ~~~~~ 226 (277)
T PRK13652 222 VEEIF 226 (277)
T ss_pred HHHHh
Confidence 98874
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=359.27 Aligned_cols=222 Identities=22% Similarity=0.397 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ..+|+|.++|+
T Consensus 12 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWYGE------------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 7999999998853 35999999999999999999999999999999999998751 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++ +||+||+.+....+ +.+.++.+++++++++.+|+.+..... -+..++.|
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 155 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH--GANKKDLDGVVENALRSAALWDETSDR-LKSPALSL 155 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhC
Confidence 8642 134677999999998888 89999999875432 233444556789999999984321111 12345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|++++
T Consensus 156 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 156 SGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIE 233 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 899999999975 5778999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 234 ~~~~~~~~ 241 (258)
T PRK14268 234 FGQTRQIF 241 (258)
T ss_pred eCCHHHHh
Confidence 99988764
No 121
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-43 Score=378.07 Aligned_cols=230 Identities=22% Similarity=0.341 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEecccccc-----c-------cccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcc
Q 039035 11 GLGFSNLTYTVTKKKKIE-----G-------TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSL 78 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~-----~-------~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~ 78 (646)
.|+++||++.|....... . .+......+|+|+||++++||+++|+|||||||||||++|+|+++|++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s- 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR- 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC-
Confidence 699999999997643110 0 011123458999999999999999999999999999999999999987
Q ss_pred eeEEEECCeeCCc---cc----ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 039035 79 KGKVTLDGKETSP---SL----IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151 (646)
Q Consensus 79 ~G~I~~~g~~~~~---~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 151 (646)
|+|.++|+++.. .. .++.++||+|+..+++.+||+||+.+....+ +.+.++.+++++++++.+||.+..+
T Consensus 83 -G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~--~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 -GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA--GINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred -CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 999999998742 11 2357999999999999999999999876543 2344556678999999999987666
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcC
Q 039035 152 THIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 152 ~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D 230 (646)
+. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|
T Consensus 160 ~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D 233 (400)
T PRK10070 160 SY-----PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD 233 (400)
T ss_pred cC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence 54 468999999999999999999999999999999999999999999999976 5899999999975 5788999
Q ss_pred eEEEEeCCeEEEEcChhhHH
Q 039035 231 HLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 231 ~v~~L~~G~iv~~g~~~~~~ 250 (646)
++++|++|+++..|+++++.
T Consensus 234 ri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 234 RIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEEECCEEEecCCHHHHH
Confidence 99999999999999988764
No 122
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-43 Score=359.51 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 70 (255)
T PRK11300 5 LLSVSGLMMRFGG------------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG--GTILLRGQHIE 70 (255)
T ss_pred eEEEeeEEEEECC------------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc--ceEEECCEECC
Confidence 6999999999853 359999999999999999999999999999999999999977 99999999874
Q ss_pred cc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccC-----------CCC--CHHHHHHHHHHHHHHcCCCcccccc
Q 039035 91 PS---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRL-----------GPI--SWSDKKQRVENLVDQLGLTTTRNTH 153 (646)
Q Consensus 91 ~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ 153 (646)
.. . .+..++|++|++.+++.+||+||+.++..... +.. ...+..++++++++.+||.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 31 1 24468999999999999999999998643110 000 1123345788899999998766655
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeE
Q 039035 154 IGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 154 vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v 232 (646)
+ ++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++
T Consensus 151 ~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i 224 (255)
T PRK11300 151 A-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRI 224 (255)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 4 579999999999999999999999999999999999999999999999875 899999999975 577899999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 039035 233 IILARGQLMFQGPPKEVT 250 (646)
Q Consensus 233 ~~L~~G~iv~~g~~~~~~ 250 (646)
++|++|++++.|+++++.
T Consensus 225 ~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 225 YVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEEECCeEEecCCHHHHh
Confidence 999999999999987763
No 123
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=360.86 Aligned_cols=219 Identities=30% Similarity=0.436 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 67 (255)
T PRK11231 2 TLRTENLTVGYGT------------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS--GTVFLGDKPIS 67 (255)
T ss_pred EEEEEeEEEEECC------------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC--cEEEECCEEhH
Confidence 4889999999853 359999999999999999999999999999999999998876 99999998764
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADF--RLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. ...++.++|++|+..+++.+|+.||+.++... .......++..++++++++.+||.+..++. ++.||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23456799999999888899999999875311 000111233456788999999998766655 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|+
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~ 221 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGT 221 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcC
Confidence 999999999999999999999999999999999999999999878999999999975 5789999999999999999998
Q ss_pred hhhH
Q 039035 246 PKEV 249 (646)
Q Consensus 246 ~~~~ 249 (646)
++++
T Consensus 222 ~~~~ 225 (255)
T PRK11231 222 PEEV 225 (255)
T ss_pred HHHh
Confidence 7765
No 124
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.4e-43 Score=351.92 Aligned_cols=207 Identities=30% Similarity=0.491 Sum_probs=177.1
Q ss_pred EEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-
Q 039035 13 GFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP- 91 (646)
Q Consensus 13 ~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~- 91 (646)
+++|++++|++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 1 ~~~~l~~~~~~~----------~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~~ 68 (211)
T cd03225 1 ELKNLSFSYPDG----------ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS--GEVLVDGKDLTKL 68 (211)
T ss_pred CceeEEEecCCC----------CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEEcccC
Confidence 468999988531 1359999999999999999999999999999999999999877 999999987642
Q ss_pred --ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 92 --SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
..+++.++|++|++. .++.+||+||+.+....+ .....+.+++++++++.+||.+..++. ++.|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 141 (211)
T cd03225 69 SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQ 141 (211)
T ss_pred CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHH
Confidence 234678999999975 466789999998865432 233344556789999999998666554 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 142 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999877999999999975 5788999999999985
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=359.81 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=183.9
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
+..|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~--G~i~~~g~~ 75 (257)
T PRK11247 10 GTPLLLNAVSKRYGE------------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA--GELLAGTAP 75 (257)
T ss_pred CCcEEEEEEEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEE
Confidence 347999999999953 359999999999999999999999999999999999999977 999999987
Q ss_pred CCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 89 TSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 89 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+. .+++.++|++|++.+++.+||+||+.+... ...+++++++++.+||.+..++. +.+|||||||
T Consensus 76 ~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 76 LA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--------GQWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred HH--HhhCceEEEecCccCCCCCcHHHHHHhccc--------chHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 63 346789999999999999999999987421 11245788999999998766554 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|++++.|+.+
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999999975 5899999999975 577899999999999999988754
No 126
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=360.79 Aligned_cols=219 Identities=28% Similarity=0.459 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~--G~i~~~g~~~~ 67 (275)
T PRK13639 1 ILETRDLKYSYPDG-----------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS--GEVLIKGEPIK 67 (275)
T ss_pred CEEEEEEEEEeCCC-----------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--cEEEECCEECc
Confidence 37899999999531 358999999999999999999999999999999999999877 99999999874
Q ss_pred c-----ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P-----SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+ ++|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~ 140 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL--GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSG 140 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCH
Confidence 1 124678999999963 333469999998764321 2344555678899999999987766654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|
T Consensus 141 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999877999999999975 577899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 220 ~~~~~~ 225 (275)
T PRK13639 220 TPKEVF 225 (275)
T ss_pred CHHHHh
Confidence 998874
No 127
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.8e-43 Score=360.44 Aligned_cols=228 Identities=22% Similarity=0.353 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+..... ....++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~~~~---~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 76 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLF---GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ--GTVSFRGQDLY 76 (265)
T ss_pred eEEEEeEEEEeccCccc---cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEcc
Confidence 48899999999632100 00013469999999999999999999999999999999999999977 99999999864
Q ss_pred cc------cccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 039035 91 PS------LIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~~------~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 161 (646)
.. ..++.++|++|++ .+++.+||+||+.+..... .....++.+++++++++.+||. +..++. +++
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~ 150 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-TSLDESEQKARIAELLDMVGLRSEDADKL-----PRQ 150 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhh
Confidence 21 2456799999996 4677899999998764321 1233344566789999999996 455544 457
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQI 229 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 230 ~~~g~~~~~~ 239 (265)
T TIGR02769 230 VEECDVAQLL 239 (265)
T ss_pred EEECCHHHHc
Confidence 9999988764
No 128
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=369.93 Aligned_cols=230 Identities=21% Similarity=0.317 Sum_probs=189.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--cceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG--SLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G~I~~~g~~ 88 (646)
.|+++||+++|+.+. ..+.+|+||||+|++||+++|+|+||||||||+++|+|++++. ..+|+|.++|++
T Consensus 3 ~L~v~~l~~~y~~~~--------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred eEEEeeeEEEEeCCC--------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 589999999996431 2346999999999999999999999999999999999998631 124999999998
Q ss_pred CCc---cc----ccccEEEEccCCC--CCCCCCHHHHHHHHHHcc-CCC---CCHHHHHHHHHHHHHHcCCCcccccccc
Q 039035 89 TSP---SL----IKRTSAYIMQEDR--LFPMLTVFETLMFAADFR-LGP---ISWSDKKQRVENLVDQLGLTTTRNTHIG 155 (646)
Q Consensus 89 ~~~---~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg 155 (646)
+.. .. .++.++||+|++. +.|.+||.+++.+..... ... ....+.++++.++++.+||.+..+ ..
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~ 152 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AM 152 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HH
Confidence 742 11 2357999999975 688999999998643211 101 112344568899999999975321 12
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
+.++++|||||||||+||+||+.+|++|||||||+|||+.++.+++++|+++.++ |.|||++|||+. .+.+++|++++
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 4457799999999999999999999999999999999999999999999999874 999999999965 57889999999
Q ss_pred EeCCeEEEEcChhhHHH
Q 039035 235 LARGQLMFQGPPKEVTL 251 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~~ 251 (646)
|++|++++.|+++++..
T Consensus 232 m~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 232 LYCGQTVETAPSKELVT 248 (330)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999888753
No 129
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-43 Score=362.38 Aligned_cols=225 Identities=24% Similarity=0.407 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~~~~~------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~i~g~~i 74 (280)
T PRK13633 3 EMIKCKNVSYKYESNEE------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE--GKVYVDGLDT 74 (280)
T ss_pred ceEEEeeeEEEcCCCCC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEec
Confidence 46999999999964210 012469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc----ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 90 SP----SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 90 ~~----~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ...++.+||++|++. .+...||.|++.|..... +.+.++.+++++++++.+||.+..++.+ ++|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL--GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc--CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 53 234678999999974 233469999999875432 2345556678999999999987766654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.. ||++++|++|+++..
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999986 49999999999864 554 999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 226 g~~~~~~~ 233 (280)
T PRK13633 226 GTPKEIFK 233 (280)
T ss_pred cCHHHHhc
Confidence 99988753
No 130
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=359.76 Aligned_cols=220 Identities=22% Similarity=0.390 Sum_probs=189.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++|++++|++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~--G~i~~~g~~~ 73 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS--GEIFYNNQAI 73 (269)
T ss_pred ceEEEEEEEEEcCCC----------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEC
Confidence 379999999998642 1358999999999999999999999999999999999999877 9999999987
Q ss_pred Cc---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 90 SP---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
.. ...++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++. +++||||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 146 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGG 146 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc--CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHH
Confidence 42 245678999999974 677889999998865432 233445566788999999998766654 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.. +|++++|++|++++.|
T Consensus 147 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 147 QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999865 8999999999864 554 9999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 225 ~~~~~~ 230 (269)
T PRK13648 225 TPTEIF 230 (269)
T ss_pred CHHHHh
Confidence 988764
No 131
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-43 Score=361.19 Aligned_cols=223 Identities=28% Similarity=0.414 Sum_probs=189.9
Q ss_pred CCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC
Q 039035 7 DFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG 86 (646)
Q Consensus 7 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g 86 (646)
..+..|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 7 ~~~~~l~i~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g 72 (265)
T PRK10575 7 HSDTTFALRNVSFRVPG------------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE--GEILLDA 72 (265)
T ss_pred CCCceEEEeeEEEEECC------------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--CEEEECC
Confidence 33447999999999853 359999999999999999999999999999999999999877 9999999
Q ss_pred eeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ..+++.++|++|+..+++.+||.||+.+....... .....+..++++++++.++|.+..++.+ ++
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 147 (265)
T PRK10575 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DS 147 (265)
T ss_pred EehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----cc
Confidence 87632 23567799999998888999999999875321110 0112234567899999999976666554 57
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|++
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEM 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999865 899999999975 57789999999999999
Q ss_pred EEEcChhhH
Q 039035 241 MFQGPPKEV 249 (646)
Q Consensus 241 v~~g~~~~~ 249 (646)
+..|+++++
T Consensus 227 ~~~~~~~~~ 235 (265)
T PRK10575 227 IAQGTPAEL 235 (265)
T ss_pred EEecCHHHh
Confidence 999987765
No 132
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.9e-43 Score=375.34 Aligned_cols=229 Identities=22% Similarity=0.378 Sum_probs=195.7
Q ss_pred EEEEeEEEEEecccccc------c------cccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcce
Q 039035 12 LGFSNLTYTVTKKKKIE------G------TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLK 79 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~------~------~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~ 79 (646)
|+++||++-++.+++.. + .+..+...+|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~-- 78 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR-- 78 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--
Confidence 57899999997654321 0 012235679999999999999999999999999999999999999987
Q ss_pred eEEEECCe----eCCc---cc---c-cccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc
Q 039035 80 GKVTLDGK----ETSP---SL---I-KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT 148 (646)
Q Consensus 80 G~I~~~g~----~~~~---~~---~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 148 (646)
|+|.++|+ ++.. .. . ++.++||+|++.++|.+||+||+.++...+ +.++.+.+++++++++.+||++
T Consensus 79 G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~--g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 79 GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ--GMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred cEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCch
Confidence 99999996 3321 11 2 257999999999999999999999986543 3455666788999999999987
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHh
Q 039035 149 TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQL 227 (646)
Q Consensus 149 ~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~ 227 (646)
..++.. .+|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++ |+|||++||+++ ++.+
T Consensus 157 ~~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~ 230 (382)
T TIGR03415 157 WADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALK 230 (382)
T ss_pred hhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 766654 579999999999999999999999999999999999999999999999875 999999999975 5789
Q ss_pred hcCeEEEEeCCeEEEEcChhhHH
Q 039035 228 LLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 228 ~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
++|++++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998875
No 133
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=358.99 Aligned_cols=223 Identities=23% Similarity=0.377 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-----CcceeEEEE
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS-----GSLKGKVTL 84 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-----~~~~G~I~~ 84 (646)
+.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++ |+|.+
T Consensus 18 ~~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~--G~I~~ 83 (267)
T PRK14235 18 IKMRARDVSVFYGE------------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVT--GKITL 83 (267)
T ss_pred ceEEEEeEEEEECC------------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCc--eEEEE
Confidence 38999999999953 3599999999999999999999999999999999999875 45 99999
Q ss_pred CCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 85 DGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 85 ~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+|+++.. ..+++.++|++|++.+++. ||.||+.+....+....+..+..++++++++.+||.+...... +..+
T Consensus 84 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 161 (267)
T PRK14235 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL-HEPG 161 (267)
T ss_pred CCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh-hCCc
Confidence 9998742 2346789999999988885 9999999875432111123344567899999999964211111 2345
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+
T Consensus 162 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~ 239 (267)
T PRK14235 162 TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGN 239 (267)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999976 789999999975 5778999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+++++.
T Consensus 240 i~~~g~~~~~~ 250 (267)
T PRK14235 240 LVEVGDTEKMF 250 (267)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 134
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=363.94 Aligned_cols=225 Identities=24% Similarity=0.374 Sum_probs=188.7
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..+.|+++||+++|+++.. ....+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 3 ~~~~l~i~nl~~~~~~~~~-------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~ 73 (289)
T PRK13645 3 FSKDIILDNVSYTYAKKTP-------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET--GQTIVGDY 73 (289)
T ss_pred ccceEEEEEEEEEeCCCCc-------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCE
Confidence 4568999999999964210 01359999999999999999999999999999999999999877 99999998
Q ss_pred eCCc--------ccccccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccC
Q 039035 88 ETSP--------SLIKRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGD 156 (646)
Q Consensus 88 ~~~~--------~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 156 (646)
++.. ..+++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.
T Consensus 74 ~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~ll~~~~L~~~~~~~~--- 147 (289)
T PRK13645 74 AIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL--GENKQEAYKKVPELLKLVQLPEDYVKRS--- 147 (289)
T ss_pred EccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCChhHhcCC---
Confidence 8631 234678999999973 344 59999998865322 233444556788999999994 455544
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
++.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|
T Consensus 148 --~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l 224 (289)
T PRK13645 148 --PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVM 224 (289)
T ss_pred --hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999986 4899999999975 578899999999
Q ss_pred eCCeEEEEcChhhHH
Q 039035 236 ARGQLMFQGPPKEVT 250 (646)
Q Consensus 236 ~~G~iv~~g~~~~~~ 250 (646)
++|++++.|+++++.
T Consensus 225 ~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 225 HEGKVISIGSPFEIF 239 (289)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 135
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=355.41 Aligned_cols=224 Identities=22% Similarity=0.382 Sum_probs=185.6
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC---CCCCcceeEEEECC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR---IASGSLKGKVTLDG 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~---~~~~~~~G~I~~~g 86 (646)
..|+++|+++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+ .++...+|+|.++|
T Consensus 2 ~~l~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 2 VKIDARDVNFWYGD------------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred cEEEEEEEEEEECC------------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 36899999999853 3599999999999999999999999999999999997 34421249999999
Q ss_pred eeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+||.+...... +..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG-VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFA 146 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCccc
Confidence 98742 234677999999998887 599999988754331 1122334567889999999864321111 234568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++. .+.++||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMV 224 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999995 4799999999976 577899999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
+.|+++++.
T Consensus 225 ~~~~~~~~~ 233 (250)
T PRK14245 225 EYDDTKKIF 233 (250)
T ss_pred EECCHHHHh
Confidence 999998874
No 136
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.1e-43 Score=351.69 Aligned_cols=209 Identities=25% Similarity=0.443 Sum_probs=176.0
Q ss_pred EEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc
Q 039035 13 GFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS 92 (646)
Q Consensus 13 ~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~ 92 (646)
+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 ~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~-- 64 (213)
T cd03235 1 EVEDLTVSYGG------------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS--GSIRVFGKPLE-- 64 (213)
T ss_pred CcccceeEECC------------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--CEEEECCccHH--
Confidence 36889988853 359999999999999999999999999999999999999977 99999998764
Q ss_pred cccccEEEEccCCCCC--CCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 93 LIKRTSAYIMQEDRLF--PMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 93 ~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
..++.++|++|++.+. ..+||+||+.+....+.. ....++.+++++++++.+|+++..++.+ .+|||||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~q 139 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQ 139 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHH
Confidence 3567899999998763 347999999886432110 0112334567899999999986666554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 140 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 140 RVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999999999999878999999999975 578899999999876 65554
No 137
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=360.59 Aligned_cols=220 Identities=25% Similarity=0.431 Sum_probs=189.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..++++|+++.|++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++
T Consensus 6 ~~l~~~nl~~~~~~~----------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~I~~~g~~i 73 (271)
T PRK13632 6 VMIKVENVSFSYPNS----------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS--GEIKIDGITI 73 (271)
T ss_pred eEEEEEeEEEEcCCC----------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEec
Confidence 379999999998531 2469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 90 SP---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +.||||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 146 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGG 146 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHH
Confidence 53 245678999999974 677789999998865422 2344455667899999999987666654 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|+++..|
T Consensus 147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999876 5999999999864 5 479999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 225 ~~~~~~ 230 (271)
T PRK13632 225 KPKEIL 230 (271)
T ss_pred CHHHHh
Confidence 887764
No 138
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7e-43 Score=351.65 Aligned_cols=210 Identities=30% Similarity=0.484 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|+++..
T Consensus 1 l~l~~v~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~~~~~~~ 66 (223)
T TIGR03740 1 LETKNLSKRFGK------------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS--GEIIFDGHPWTR 66 (223)
T ss_pred CEEEeEEEEECC------------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEeccc
Confidence 578999998853 359999999999999999999999999999999999999877 999999988753
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
.. ++.++|++|++.+++.+|++||+.+....+ ... .+++.++++.+||++..++.+ ..||||||||++
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~ 134 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLL--GLP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLG 134 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHc--CCC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHH
Confidence 22 357999999999999999999998765432 111 246788999999987666554 579999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++.+
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999998653
No 139
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-43 Score=359.72 Aligned_cols=221 Identities=27% Similarity=0.398 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++
T Consensus 6 ~~l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~ 71 (265)
T PRK10253 6 ARLRGEQLTLGYGK------------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH--GHVWLDGEHI 71 (265)
T ss_pred cEEEEEEEEEEECC------------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--cEEEECCEEh
Confidence 38999999999963 359999999999999999999999999999999999999877 9999999986
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ...++.++|++|++.+++.+||+||+.+......+ ....+..+++++++++.+||.+..++. ++.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 42 23456799999999999999999999875211100 011123456788999999998666555 467999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999874 899999999975 58899999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 226 g~~~~~~ 232 (265)
T PRK10253 226 GAPKEIV 232 (265)
T ss_pred CCHHHHh
Confidence 9887764
No 140
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=358.46 Aligned_cols=221 Identities=25% Similarity=0.434 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-ceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-LKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~g~~~ 89 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. .+|+|.++|+++
T Consensus 4 ~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTFNQ------------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEeCC------------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 6899999999853 359999999999999999999999999999999999998752 359999999876
Q ss_pred Cc--------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 039035 90 SP--------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG------PISWSDKKQRVENLVDQLGLTTTRNTHIG 155 (646)
Q Consensus 90 ~~--------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 155 (646)
.. ...++.++|++|++.+++.+||+||+.+......+ ....++.+++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 150 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV- 150 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-
Confidence 42 12356799999999999999999999876421000 1112334567899999999987666654
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++
T Consensus 151 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~ 225 (262)
T PRK09984 151 ----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVA 225 (262)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 57999999999999999999999999999999999999999999999986 4899999999975 47889999999
Q ss_pred EeCCeEEEEcChhhH
Q 039035 235 LARGQLMFQGPPKEV 249 (646)
Q Consensus 235 L~~G~iv~~g~~~~~ 249 (646)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999987664
No 141
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=353.65 Aligned_cols=226 Identities=23% Similarity=0.409 Sum_probs=188.7
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEEC
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTLD 85 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~~ 85 (646)
++.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. ..+|+|.++
T Consensus 2 ~~~l~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 69 (252)
T PRK14256 2 NNKVKLEQLNVHFGK------------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLD 69 (252)
T ss_pred CcEEEEEEEEEEeCC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEEC
Confidence 467999999999953 359999999999999999999999999999999999985 32 124999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|+++.. ..+++.++|++|+..+++.+|++||+.+...... .....+.+++++++++.+|+.+...... +..++
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14256 70 DTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG-RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAM 147 (252)
T ss_pred CEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcC
Confidence 998742 2356789999999999999999999987654321 1233444567899999999864211111 23456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDL 225 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 689999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
+..|+++++.
T Consensus 226 ~~~~~~~~~~ 235 (252)
T PRK14256 226 VECGETKKIF 235 (252)
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-42 Score=357.38 Aligned_cols=218 Identities=29% Similarity=0.474 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~ 67 (256)
T TIGR03873 2 LRLSRVSWSAGG------------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA--GTVDLAGVDLHG 67 (256)
T ss_pred ceEEeEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC--CEEEECCEEccc
Confidence 689999999853 359999999999999999999999999999999999999877 999999988642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHH-cc-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAAD-FR-LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
...++.++|++|++.+++.+||+||+.+... .+ ......++..++++++++.+|+.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 142 (256)
T TIGR03873 68 LSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGE 142 (256)
T ss_pred CCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHH
Confidence 2345679999999888888999999987531 10 001112334467899999999976666554 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+.
T Consensus 143 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCH
Confidence 99999999999999999999999999999999999999999877999999999976 57889999999999999999987
Q ss_pred hhH
Q 039035 247 KEV 249 (646)
Q Consensus 247 ~~~ 249 (646)
+++
T Consensus 222 ~~~ 224 (256)
T TIGR03873 222 REV 224 (256)
T ss_pred HHh
Confidence 765
No 143
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=360.00 Aligned_cols=223 Identities=25% Similarity=0.411 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-ceeEEEECCee
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-LKGKVTLDGKE 88 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~g~~ 88 (646)
..|+++|+++.|+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ .+|+|.++|++
T Consensus 4 ~~l~i~~l~~~~~~~----------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred ceEEEEEEEEEcCCC----------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 379999999998532 2359999999999999999999999999999999999998853 23899999998
Q ss_pred CCc---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 89 TSP---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
+.. ...++.+||++|++. .++..||+||+.|....+ ..+.++.+++++++++.+||.+..++. ++.|||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~ 146 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR--AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSG 146 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC--CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCH
Confidence 753 234678999999974 677789999998865322 245556667899999999998766555 468999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.
T Consensus 147 G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 9999999999764 5 57999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 225 g~~~~~~~ 232 (282)
T PRK13640 225 GSPVEIFS 232 (282)
T ss_pred CCHHHHhc
Confidence 99988753
No 144
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-42 Score=346.67 Aligned_cols=209 Identities=28% Similarity=0.485 Sum_probs=178.7
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++ . .|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~------------~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~--G~i~~~g~~~~~ 64 (211)
T cd03298 1 VRLDKIRFSYGEQ------------P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTA 64 (211)
T ss_pred CEEEeEEEEeCCE------------e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEEcCc
Confidence 4789999988531 2 29999999999999999999999999999999999877 999999998743
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+||.+..++. +.+||||||||+
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv 137 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRV 137 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc-Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHH
Confidence 2235679999999999999999999987643211 11 223456789999999998766655 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999864 899999999975 577899999999999998654
No 145
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.9e-42 Score=348.29 Aligned_cols=215 Identities=29% Similarity=0.418 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|+++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++
T Consensus 5 ~~l~~~~l~~~~~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~--G~i~~~g~~~ 74 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS--GEVSLVGQPL 74 (228)
T ss_pred ceEEEeeeEEEccCCC--------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC--eeEEECCEEc
Confidence 4799999999986421 01359999999999999999999999999999999999999977 9999999987
Q ss_pred Ccc---c---c-cccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 90 SPS---L---I-KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 90 ~~~---~---~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
... . . ++.++|++|++.+++.+||.||+.+....+ ..+.++.+++++++++.+||.+..++. +..|
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 147 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQL 147 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhC
Confidence 431 1 1 357999999999999999999998865432 223445567899999999998766655 4579
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+ +.+|++++|++|+++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 899999999976 45 459999999999987
Q ss_pred EE
Q 039035 242 FQ 243 (646)
Q Consensus 242 ~~ 243 (646)
+.
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
No 146
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-42 Score=351.51 Aligned_cols=213 Identities=26% Similarity=0.441 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (230)
T TIGR03410 1 LEVSNLNVYYGQ------------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS--GSIRLDGEDITK 66 (230)
T ss_pred CEEEeEEEEeCC------------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CEEEECCEECCC
Confidence 578999999853 359999999999999999999999999999999999999977 999999988642
Q ss_pred c----cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCChHH
Q 039035 92 S----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-LTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 ~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGe 166 (646)
. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+.++++++.++ +.+..++. +++|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~ 136 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP--RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQ 136 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC--cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHH
Confidence 1 135679999999999999999999988754321 11 2234577777776 45444444 46799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+
T Consensus 137 ~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 137 QQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGA 215 (230)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999975 5788999999999999999999
Q ss_pred hhhH
Q 039035 246 PKEV 249 (646)
Q Consensus 246 ~~~~ 249 (646)
++++
T Consensus 216 ~~~~ 219 (230)
T TIGR03410 216 GDEL 219 (230)
T ss_pred HHHc
Confidence 8776
No 147
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=371.63 Aligned_cols=210 Identities=28% Similarity=0.485 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|++ ||+++|++. . + |+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 1 ~l~~-~l~k~~~~~------------~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~--G~I~~~g~~~~ 63 (352)
T PRK11144 1 MLEL-NFKQQLGDL------------C-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK--GRIVLNGRVLF 63 (352)
T ss_pred CeEE-EEEEEeCCE------------E-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEcc
Confidence 3677 899988531 2 2 8999999999999999999999999999999999977 99999998864
Q ss_pred c-------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 P-------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. ...++.++||+|+..+++.+||+||+.|+.. ...+++++++++.+||.+..++. +++||
T Consensus 64 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 130 (352)
T PRK11144 64 DAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA--------KSMVAQFDKIVALLGIEPLLDRY-----PGSLS 130 (352)
T ss_pred ccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--------hhhHHHHHHHHHHcCCchhhhCC-----cccCC
Confidence 2 1246789999999999999999999988642 12345789999999998766655 46899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++.
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKA 209 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999875 899999999975 6889999999999999999
Q ss_pred EcChhhHHH
Q 039035 243 QGPPKEVTL 251 (646)
Q Consensus 243 ~g~~~~~~~ 251 (646)
.|+++++..
T Consensus 210 ~g~~~~i~~ 218 (352)
T PRK11144 210 FGPLEEVWA 218 (352)
T ss_pred ecCHHHHHh
Confidence 999998854
No 148
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=355.84 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=187.4
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEE
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTL 84 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~ 84 (646)
..+.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. ..+|+|.+
T Consensus 10 ~~~~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 10 APSKIQVRNLNFYYGK------------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CCceEEEEEEEEEeCC------------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 3458999999999953 259999999999999999999999999999999999986 21 12499999
Q ss_pred CCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 85 DGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 85 ~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+|+++.. ..+++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++.+...... +..+
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 154 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE-KLSRAEMDERVEWALTKAALWNEVKDKL-HQSG 154 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC-CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCC
Confidence 9988742 234678999999998888 799999988654321 2344455577899999999853211111 2345
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+
T Consensus 155 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 232 (260)
T PRK10744 155 YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGE 232 (260)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999964 789999999975 5778999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (260)
T PRK10744 233 LIEFGNTDTIF 243 (260)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 149
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-42 Score=350.47 Aligned_cols=216 Identities=26% Similarity=0.468 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.. ..|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~~--------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~ 64 (232)
T PRK10771 1 MLKLTDITWLYHHL--------------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS--GSLTLNGQDHT 64 (232)
T ss_pred CeEEEEEEEEECCc--------------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCeecC
Confidence 37899999999531 138999999999999999999999999999999999977 99999999865
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+||++..++.+ +.||||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 137 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL-KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQR 137 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc-CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHH
Confidence 3 1234679999999999999999999987532111 11 2234567899999999987666654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
++||++++.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 216 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDE 216 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999975 5788999999999999999999877
Q ss_pred HH
Q 039035 249 VT 250 (646)
Q Consensus 249 ~~ 250 (646)
+.
T Consensus 217 ~~ 218 (232)
T PRK10771 217 LL 218 (232)
T ss_pred HH
Confidence 64
No 150
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-42 Score=355.05 Aligned_cols=227 Identities=20% Similarity=0.339 Sum_probs=188.1
Q ss_pred CCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEE
Q 039035 7 DFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVT 83 (646)
Q Consensus 7 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~ 83 (646)
..+..|+++|+++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. ..+|+|.
T Consensus 8 ~~~~~l~i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~ 75 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQ------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75 (259)
T ss_pred cCCceEEEeeEEEEECC------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEE
Confidence 34448999999999853 259999999999999999999999999999999999986 32 1249999
Q ss_pred ECCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 84 LDGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 84 ~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++|+++.. ...++.++|++|++.+++. ||+||+.+....+. ....++..++++++++.+++.+..... -+..
T Consensus 76 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~ 152 (259)
T PRK14274 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG-TKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQ 152 (259)
T ss_pred ECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhh-hhCC
Confidence 99998742 2346789999999988886 99999988654321 123344556788999999985421111 1234
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|
T Consensus 153 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G 230 (259)
T PRK14274 153 ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMG 230 (259)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999975 799999999975 578899999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
+++..|+++++.
T Consensus 231 ~i~~~g~~~~~~ 242 (259)
T PRK14274 231 ELVECNDTNKMF 242 (259)
T ss_pred EEEEECCHHHHh
Confidence 999999988874
No 151
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.5e-42 Score=350.90 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=189.8
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.++..
T Consensus 1 i~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~i~i~g~~~~~ 66 (237)
T TIGR00968 1 IEIANISKRFGS------------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS--GRIRLNGQDATR 66 (237)
T ss_pred CEEEEEEEEECC------------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEcCc
Confidence 478999999853 359999999999999999999999999999999999998877 999999998753
Q ss_pred c-cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 S-LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 ~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
. ..++.++|++|++.+++.+|+.||+.+....+ +.......+.++++++.+++.+..++.. +.|||||+||+
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl 139 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR--KHPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRV 139 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHH
Confidence 2 23567999999999999999999998875432 2233444567899999999976666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+.+++
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999876 899999999975 57889999999999999999998876
Q ss_pred H
Q 039035 250 T 250 (646)
Q Consensus 250 ~ 250 (646)
.
T Consensus 219 ~ 219 (237)
T TIGR00968 219 Y 219 (237)
T ss_pred H
Confidence 4
No 152
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=353.25 Aligned_cols=213 Identities=28% Similarity=0.438 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 68 (241)
T PRK14250 3 EIEFKEVSYSSFG------------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE--GSILIDGVDIK 68 (241)
T ss_pred eEEEEeEEEEeCC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEhh
Confidence 5899999999853 359999999999999999999999999999999999999977 99999998864
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+||. +..++. +..|||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 136 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSGGE 136 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc--C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHH
Confidence 2 235678999999998887 59999998754321 1 1235678899999996 344443 56899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|+
T Consensus 137 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 215 (241)
T PRK14250 137 AQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAK 215 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999874 999999999975 5788999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 216 ~~~~~ 220 (241)
T PRK14250 216 TYDFF 220 (241)
T ss_pred HHHHh
Confidence 88764
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-42 Score=357.68 Aligned_cols=220 Identities=25% Similarity=0.387 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~~---------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~i~ 72 (277)
T PRK13642 4 ILEVENLVFKYEKE---------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE--GKVKIDGELLT 72 (277)
T ss_pred eEEEEEEEEEcCCC---------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--CEEEECCEECC
Confidence 68999999999642 12359999999999999999999999999999999999999977 99999999875
Q ss_pred c---ccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+||.+..++. +..|||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~ 145 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ--GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQ 145 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc--CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHH
Confidence 3 235678999999974 677789999998865422 234455567889999999998766654 46799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .+|++++|++|+++..|+
T Consensus 146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAA 223 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 9999999999764 54 699999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 224 ~~~~~ 228 (277)
T PRK13642 224 PSELF 228 (277)
T ss_pred HHHHh
Confidence 88864
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=354.39 Aligned_cols=224 Identities=22% Similarity=0.353 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.++++|++++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. ..+|+|.++|+
T Consensus 4 ~l~i~~v~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 4 RIDVKDLNIYYGS------------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred cEEEeeEEEEECC------------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 6899999999953 25999999999999999999999999999999999998742 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||.+..... -+..+++|
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 149 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG-VRNKKDLDELVEKSLRGANLWNEVKDR-LDKPGGGL 149 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccC
Confidence 8631 2356789999999999999999999988764321 123445566789999999985211111 12345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe------
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA------ 236 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------ 236 (646)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~ 227 (258)
T PRK14241 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGK 227 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCC
Confidence 99999999999999999999999999999999999999999999964 689999999975 5788999999997
Q ss_pred CCeEEEEcChhhHH
Q 039035 237 RGQLMFQGPPKEVT 250 (646)
Q Consensus 237 ~G~iv~~g~~~~~~ 250 (646)
+|++++.|+++++.
T Consensus 228 ~g~i~~~~~~~~~~ 241 (258)
T PRK14241 228 PGRLVEIDDTEKIF 241 (258)
T ss_pred CceEEecCCHHHHH
Confidence 79999999988764
No 155
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=352.47 Aligned_cols=222 Identities=24% Similarity=0.352 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA---SGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~---~~~~~G~I~~~g~ 87 (646)
.++++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++ |+|.++|+
T Consensus 2 ~~~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~--G~i~~~g~ 67 (246)
T PRK14269 2 IAKTTNLNLFYGK------------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID--GLVEIEGK 67 (246)
T ss_pred ceeeeeeEEEECC------------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCc--eEEEECCE
Confidence 4789999999953 359999999999999999999999999999999999974 455 99999999
Q ss_pred eCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 88 ETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 88 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
++.. ...++.++|++|++.+++ .||+||+.+....+......++.+++++++++.++|.+...... +..++.|||
T Consensus 68 ~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 145 (246)
T PRK14269 68 DVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSG 145 (246)
T ss_pred ecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCH
Confidence 8753 235678999999998887 69999999875432100122344567889999999953211111 234568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+++|++++|++|++++.|
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 899999999975 578899999999999999999
Q ss_pred ChhhHH
Q 039035 245 PPKEVT 250 (646)
Q Consensus 245 ~~~~~~ 250 (646)
+++++.
T Consensus 224 ~~~~~~ 229 (246)
T PRK14269 224 ESKEFF 229 (246)
T ss_pred CHHHHH
Confidence 988764
No 156
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-43 Score=332.89 Aligned_cols=220 Identities=28% Similarity=0.435 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+.+||||++.+ +.+|++||++++|||++||+||||||||||||.|+|...|++ |++.+||.+.+
T Consensus 1 mi~a~nls~~~~G------------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~--G~v~~~g~~l~ 66 (259)
T COG4559 1 MIRAENLSYSLAG------------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS--GEVTLNGVPLN 66 (259)
T ss_pred CeeeeeeEEEeec------------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC--CeEeeCCcChh
Confidence 4789999999865 479999999999999999999999999999999999999988 99999999875
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. .++.++-+.+||+..+-...||+|-+.++..-...+....+..+.+++.|...++.+.+.+.+ ..||||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEq 141 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQ 141 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHH
Confidence 3 345567789999988755569999999885432111222345566889999999988776554 57999999
Q ss_pred HHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 168 RRVSIGVDIIH------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 168 qRv~ia~~L~~------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||.+. ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999985 445999999999999999999999999999999999999999874 67899999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
..|+++++.
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999875
No 157
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.3e-42 Score=370.62 Aligned_cols=210 Identities=28% Similarity=0.488 Sum_probs=183.5
Q ss_pred eEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----
Q 039035 16 NLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---- 91 (646)
Q Consensus 16 ~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---- 91 (646)
||+++|++ +. + |+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 4 ~l~~~~~~------------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~--G~I~~~g~~i~~~~~~ 67 (354)
T TIGR02142 4 RFSKRLGD------------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE--GEIVLNGRTLFDSRKG 67 (354)
T ss_pred EEEEEECC------------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECccCccc
Confidence 78888853 12 4 8999999999999999999999999999999999977 999999998642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
...++.++||+|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkq 138 (354)
T TIGR02142 68 IFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQ 138 (354)
T ss_pred cccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 134678999999999999999999999875421 22344567899999999987666554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|+++
T Consensus 139 RvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 217 (354)
T TIGR02142 139 RVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIA 217 (354)
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999975 578899999999999999999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 218 ~~~~ 221 (354)
T TIGR02142 218 EVWA 221 (354)
T ss_pred HHhc
Confidence 8753
No 158
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-43 Score=324.03 Aligned_cols=213 Identities=30% Similarity=0.471 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++++++++.... .+..||++|++.+++||-+||+|||||||||||-+++|+..|++ |+|.+.|+++.
T Consensus 6 ii~~~~l~ktvg~~~--------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss--GeV~l~G~~L~ 75 (228)
T COG4181 6 IIEVHHLSKTVGQGE--------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS--GEVRLLGQPLH 75 (228)
T ss_pred eeehhhhhhhhcCCC--------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC--ceEEEcCcchh
Confidence 789999999987653 45789999999999999999999999999999999999999988 99999999874
Q ss_pred c------ccc-cccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 P------SLI-KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~------~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. ..+ .+++|||+|...+.|+||..||+...+.++-. +..+.++...++|+.+||.+..+.+ |++||
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge--~~~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLS 148 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE--SSADSRAGAKALLEAVGLGKRLTHY-----PAQLS 148 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC--ccccHHHHHHHHHHHhCcccccccC-----ccccC
Confidence 2 123 47899999999999999999999998887632 3345567789999999998766544 67999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||+|||+||||++..|++||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 149 GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999999976 5999999999985 567799999999999874
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3e-42 Score=356.46 Aligned_cols=228 Identities=20% Similarity=0.334 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+... .....+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGW---FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS--GELLIDDHPLH 78 (267)
T ss_pred eEEEeceEEEecCCCCc---ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC--CEEEECCEECC
Confidence 58999999999632100 00012469999999999999999999999999999999999999977 99999999875
Q ss_pred c---ccccccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCh
Q 039035 91 P---SLIKRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 164 (646)
. ...++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..++. +.+|||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 152 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAP 152 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCH
Confidence 2 123457999999975 6788899999988655432 123344556789999999994 444443 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++++.
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999874 899999999975 57889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 232 ~~~~~~~ 238 (267)
T PRK15112 232 GSTADVL 238 (267)
T ss_pred CCHHHHh
Confidence 9887764
No 160
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=352.08 Aligned_cols=223 Identities=24% Similarity=0.377 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~~g~ 87 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+ ..+|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 5 ILQVSDLSVYYNK------------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 6899999999853 359999999999999999999999999999999999853 53 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++||+|++.+++ +||+||+.+....+ +....+..+++++++++.+++.+..... .+..+++|
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 149 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-GIKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGL 149 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccC
Confidence 8632 234678999999998887 79999999875432 1112333456788899999885321111 13345789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 699999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 228 ~g~~~~~~ 235 (252)
T PRK14239 228 YNDTKQMF 235 (252)
T ss_pred eCCHHHHH
Confidence 99988874
No 161
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-42 Score=347.00 Aligned_cols=217 Identities=28% Similarity=0.478 Sum_probs=189.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++++. +.+++|+|+++++||+++|+||||||||||+++|+|.++|.. |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~--G~i~~~g~~~~~ 66 (232)
T cd03300 1 IELENVSKFYGG------------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS--GEILLDGKDITN 66 (232)
T ss_pred CEEEeEEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEEcCc
Confidence 478999998853 359999999999999999999999999999999999999977 999999998753
Q ss_pred c-cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 S-LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 ~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....++++++++.+|+.+..++.+ +.||||||||+
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl 139 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK--KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRV 139 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 1 23567999999999999999999998876543 2233445567889999999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|+.+++
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999875 999999999975 57889999999999999999987766
Q ss_pred H
Q 039035 250 T 250 (646)
Q Consensus 250 ~ 250 (646)
.
T Consensus 219 ~ 219 (232)
T cd03300 219 Y 219 (232)
T ss_pred H
Confidence 4
No 162
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=354.51 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||+++|+. +.+|+|+|+++++||+++|+|||||||||||++|+|+++|. ..+|+|.++|+
T Consensus 20 ~l~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (267)
T PRK14237 20 ALSTKDLHVYYGK------------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI 87 (267)
T ss_pred EEEEeeEEEEECC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE
Confidence 7999999999853 35999999999999999999999999999999999998641 13499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++ .||+||+.++.... +....++.++++.++++.++|.+..+... +..+++|
T Consensus 88 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~L 164 (267)
T PRK14237 88 DINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTL 164 (267)
T ss_pred EcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccC
Confidence 8742 134678999999998887 59999999865432 11234445677889999999964322222 3456789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|++++
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIE 242 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 799999999976 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 243 ~g~~~~~~ 250 (267)
T PRK14237 243 YDKTRNIF 250 (267)
T ss_pred eCCHHHHh
Confidence 99988874
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.5e-42 Score=343.37 Aligned_cols=210 Identities=26% Similarity=0.454 Sum_probs=181.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++||++.|+. +++|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~--------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 64 (213)
T TIGR01277 1 LALDKVRYEYEH--------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS--GSIKVNDQSHTG 64 (213)
T ss_pred CeEEeeeEEeCC--------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEEccc
Confidence 478999998842 4579999999999999999999999999999999999977 999999998743
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++||+|++.+++.+|+.||+.+...... ....+.+++++++++.+||.+..++. ++.||||||||+
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 137 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRV 137 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--CccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHH
Confidence 2356789999999999999999999987543211 11223356788999999998666555 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|+
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999999864 899999999975 5778999999999999998875
No 164
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-42 Score=348.19 Aligned_cols=216 Identities=31% Similarity=0.519 Sum_probs=188.3
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|+++.|+. ++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++..
T Consensus 1 l~~~~l~~~~~~-------------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~--G~v~i~g~~~~~ 65 (235)
T cd03299 1 LKVENLSKDWKE-------------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS--GKILLNGKDITN 65 (235)
T ss_pred CeeEeEEEEeCC-------------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc--eEEEECCEEcCc
Confidence 468999998842 27999999999999999999999999999999999999987 999999998753
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++.+ +.||||||||+
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 138 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR--KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRV 138 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHH
Confidence 223568999999999999999999998865332 2334455667889999999987666654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+.++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999765 999999999975 57889999999999999999988765
Q ss_pred H
Q 039035 250 T 250 (646)
Q Consensus 250 ~ 250 (646)
.
T Consensus 218 ~ 218 (235)
T cd03299 218 F 218 (235)
T ss_pred H
Confidence 4
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-42 Score=350.43 Aligned_cols=224 Identities=23% Similarity=0.414 Sum_probs=185.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-cceeEEEECC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS--G-SLKGKVTLDG 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~G~I~~~g 86 (646)
+.|+++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++ . ..+|+|.++|
T Consensus 2 ~~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 2 GKISVKDLDLFYGD------------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred CeEEEEEEEEEECC------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 36899999999853 2599999999999999999999999999999999998753 1 1249999999
Q ss_pred eeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ...++.++|++|++.+++ +|++||+.+....+. ..+.++.+++++++++.+++.+...... +..+.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 146 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG-IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALG 146 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCC
Confidence 98742 234678999999998888 899999998754321 1223445677888999998753211111 234568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIV 224 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 799999999975 578899999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
..|+++++.
T Consensus 225 ~~~~~~~~~ 233 (250)
T PRK14240 225 EFGDTVDLF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999988764
No 166
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=351.26 Aligned_cols=223 Identities=22% Similarity=0.330 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (251)
T PRK14270 4 KMESKNLNLWYGE------------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71 (251)
T ss_pred EEEEEEeEEEECC------------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE
Confidence 6899999999853 35899999999999999999999999999999999998651 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++ +|++||+.+...... ....++.+++++++++.+|+.+.... .-+..+++|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~L 148 (251)
T PRK14270 72 NIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG-IKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKL 148 (251)
T ss_pred ecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccC
Confidence 8742 134677999999998888 899999998754321 11234455678899999988531111 112345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++
T Consensus 149 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 149 SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999976 699999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 227 ~~~~~~~~ 234 (251)
T PRK14270 227 FNKTEKIF 234 (251)
T ss_pred eCCHHHHh
Confidence 99998874
No 167
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.9e-42 Score=350.21 Aligned_cols=223 Identities=30% Similarity=0.459 Sum_probs=185.7
Q ss_pred EEEEeEEEEEecccccc-------c--cccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE
Q 039035 12 LGFSNLTYTVTKKKKIE-------G--TWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV 82 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~-------~--~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 82 (646)
+.++|+++.|....... + .+....+++|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~--G~i 78 (236)
T cd03267 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS--GEV 78 (236)
T ss_pred CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc--eEE
Confidence 35788888887643210 0 011234679999999999999999999999999999999999999977 999
Q ss_pred EECCeeCCc--ccccccEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 83 TLDGKETSP--SLIKRTSAYIM-QEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 83 ~~~g~~~~~--~~~~~~i~yv~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
.++|++... ...++.++|++ |++.+++.+||+|++.+....+ ....++..++++++++.+||.+..++.+
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY--DLPPARFKKRLDELSELLDLEELLDTPV----- 151 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCCh-----
Confidence 999987532 23567899998 5567888999999998866542 2334455667889999999987777665
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|
T Consensus 152 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G 230 (236)
T cd03267 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKG 230 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCC
Confidence 479999999999999999999999999999999999999999999999865 899999999975 578899999999999
Q ss_pred eEEEEc
Q 039035 239 QLMFQG 244 (646)
Q Consensus 239 ~iv~~g 244 (646)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998765
No 168
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=356.83 Aligned_cols=221 Identities=26% Similarity=0.377 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc------ceeEEEE
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS------LKGKVTL 84 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~------~~G~I~~ 84 (646)
+|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. .+|+|.+
T Consensus 1 ml~~~nl~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 1 MLTADHLHVARRH------------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred CeEEEEEEEEECC------------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 3789999999853 359999999999999999999999999999999999998860 1499999
Q ss_pred CCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 85 DGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL--GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 85 ~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+|+++.. ..+++.++|++|++.+++.+||+||+.+...... .....++..++++++++.+||.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9998642 2345678999999876667899999987532111 0111133456788999999998665554 4
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhc
Q 039035 160 RGVSGGERRRVSIGVDII---------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~---------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~ 229 (646)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999999876 899999999975 577899
Q ss_pred CeEEEEeCCeEEEEcChhhH
Q 039035 230 DHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 230 D~v~~L~~G~iv~~g~~~~~ 249 (646)
|++++|++|++++.|+++++
T Consensus 223 d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 223 DRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CEEEEEECCeEEEecCHHHH
Confidence 99999999999999988766
No 169
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=352.03 Aligned_cols=224 Identities=22% Similarity=0.380 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~~g~ 87 (646)
.-+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+ |. ..+|+|.++|+
T Consensus 5 ~~~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 5 HASVKNLNLWYGS------------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEEeeeEEEEECC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 3478899998853 359999999999999999999999999999999999976 21 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++. ||+||+.+....+......++.++.++++++.+||.+...+.+ +..+++|
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~L 150 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFEL 150 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhC
Confidence 7632 1346789999999988886 9999998864332111123344567889999999965321111 2345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|++++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 899999999975 5778999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 229 ~~~~~~~~ 236 (251)
T PRK14244 229 YNTTQEIF 236 (251)
T ss_pred eCCHHHHh
Confidence 99987764
No 170
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-42 Score=354.41 Aligned_cols=222 Identities=25% Similarity=0.425 Sum_probs=184.8
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----CCcceeEEE
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-----SGSLKGKVT 83 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-----~~~~~G~I~ 83 (646)
...|+++||+++|+. +.+|+|+||+|++||+++|+|||||||||||++|+|+++ |++ |+|.
T Consensus 11 ~~~l~i~nl~~~~~~------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~--G~v~ 76 (269)
T PRK14259 11 NIIISLQNVTISYGT------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLK--GRVL 76 (269)
T ss_pred CceEEEEeEEEEECC------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCc--eEEE
Confidence 348999999999853 359999999999999999999999999999999999986 344 9999
Q ss_pred ECCeeCC-----cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 84 LDGKETS-----PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 84 ~~g~~~~-----~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++|+++. ...+++.++|++|++.+++. ||+||+.+.+..+ ... .+.+++++++++.+++....... -+..
T Consensus 77 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~ 151 (269)
T PRK14259 77 FDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN--GYT-GDMDELVERSLRKAAVWDECKDK-LNES 151 (269)
T ss_pred ECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc--CCc-HHHHHHHHHHHHHhCCcchhhhh-hCCC
Confidence 9998763 12356779999999988885 9999999876432 122 23345678889998874321111 2344
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR- 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~- 237 (646)
+++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++
T Consensus 152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~ 229 (269)
T PRK14259 152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAE 229 (269)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecc
Confidence 578999999999999999999999999999999999999999999999965 799999999975 58899999999996
Q ss_pred ----------CeEEEEcChhhHHH
Q 039035 238 ----------GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 ----------G~iv~~g~~~~~~~ 251 (646)
|++++.|+++++..
T Consensus 230 ~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 230 EVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccccccccceEEEeCCHHHHHh
Confidence 67899999988754
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-42 Score=340.70 Aligned_cols=194 Identities=33% Similarity=0.541 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---CCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA---SGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~---~~~~~G~I~~~g~ 87 (646)
.+.|+||+|.|+.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++ |+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~--------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~--G~i~i~g~ 72 (202)
T cd03233 3 TLSWRNISFTTGKGR--------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE--GDIHYNGI 72 (202)
T ss_pred eEEEEccEEEeccCC--------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcc--eEEEECCE
Confidence 689999999998642 24579999999999999999999999999999999999998 555 99999999
Q ss_pred eCCc--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 88 ETSP--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 88 ~~~~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
++.. ...++.++|++|++.+++.+||+||+.+..... . +..+..||||
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~-----~~~~~~LS~G 122 (202)
T cd03233 73 PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------G-----NEFVRGISGG 122 (202)
T ss_pred ECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------c-----ccchhhCCHH
Confidence 8753 235678999999999999999999998754210 1 2334579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+..+++.++||++++|++|++++.|
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875 6787777766555688899999999999998764
No 172
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=323.80 Aligned_cols=220 Identities=26% Similarity=0.445 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
++..++++.+|+.+ .+.+|+|+|++|.+||.++++||||||||||||+++|+.+|.. |+|.+||++++
T Consensus 3 ~l~~~~~sl~y~g~----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~--G~i~l~~r~i~ 70 (259)
T COG4525 3 MLNVSHLSLSYEGK----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR--GSIQLNGRRIE 70 (259)
T ss_pred eeehhheEEecCCc----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc--ceEEECCEecc
Confidence 56778899999764 2569999999999999999999999999999999999999988 99999999986
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
..- ..-|.|+|++.++|.+||.||+.|+.+++ ++.+.++++++.+++..+||++..++.+ .+|||||||||
T Consensus 71 gPg--aergvVFQ~~~LlPWl~~~dNvafgL~l~--Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRv 141 (259)
T COG4525 71 GPG--AERGVVFQNEALLPWLNVIDNVAFGLQLR--GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRV 141 (259)
T ss_pred CCC--ccceeEeccCccchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHH
Confidence 432 23489999999999999999999998775 6788999999999999999998776554 68999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC--CeEEEEcChh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR--GQLMFQGPPK 247 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~ 247 (646)
.|||||+.+|++|+||||++.||.-+++++-++|-++.+ .|+.++++||+..+ ..-+++++++|+. ||++..-+++
T Consensus 142 GiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 142 GIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999999999999876 59999999999875 4458999999996 7999887776
Q ss_pred hHHHH
Q 039035 248 EVTLH 252 (646)
Q Consensus 248 ~~~~~ 252 (646)
=...|
T Consensus 221 f~rR~ 225 (259)
T COG4525 221 FARRY 225 (259)
T ss_pred HHHHh
Confidence 43333
No 173
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-42 Score=350.10 Aligned_cols=223 Identities=22% Similarity=0.383 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 3 IIEIENFSAYYGE------------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eEEEEeeEEEeCC------------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5899999999853 35899999999999999999999999999999999998741 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++ .||+||+.+...... ....++.++.++++++.+|+.+..+. ..+..+++|
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~L 147 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG-VKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRL 147 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhc
Confidence 8642 134678999999998888 899999998654321 12233445668889999998642211 123456789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++.
T Consensus 148 S~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 148 SGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIE 225 (250)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 799999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 226 ~g~~~~~~ 233 (250)
T PRK14262 226 YGPTREIV 233 (250)
T ss_pred ecCHHHHH
Confidence 99988764
No 174
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-42 Score=352.92 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----CCcceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-----SGSLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-----~~~~~G~I~~~ 85 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++ |+|.++
T Consensus 21 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~--G~i~~~ 86 (268)
T PRK14248 21 ILEVKDLSIYYGE------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE--GEILYE 86 (268)
T ss_pred eEEEEEEEEEeCC------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCc--eEEEEC
Confidence 7999999999853 359999999999999999999999999999999999864 455 999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|+++.. ...++.++|++|++.+++. |++||+.+...... .......++.+++.++.+++.+.... .-+..++
T Consensus 87 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~ 163 (268)
T PRK14248 87 GLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG-ERRKSVLDEIVEESLTKAALWDEVKD-RLHSSAL 163 (268)
T ss_pred CEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcc
Confidence 998742 1346789999999988885 99999988653221 11222334567888999988531111 1123456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++
T Consensus 164 ~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDL 241 (268)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999965 689999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 242 ~~~~~~~~~~ 251 (268)
T PRK14248 242 VEYDQTEQIF 251 (268)
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 175
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.5e-42 Score=348.24 Aligned_cols=201 Identities=31% Similarity=0.436 Sum_probs=173.6
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999999877 99999999875321 23589999999999999999998
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAY 198 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~ 198 (646)
+......+....++.+++++++++.+||.+..++.+ ++||||||||++||++|+.+|++|||||||+|||+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 864311122344455667899999999987666554 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 199 SVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 199 ~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
.+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|++.++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999875 899999999975 57889999999999999988865543
No 176
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-43 Score=385.61 Aligned_cols=225 Identities=27% Similarity=0.487 Sum_probs=195.6
Q ss_pred CCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE
Q 039035 5 PVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL 84 (646)
Q Consensus 5 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 84 (646)
|....|.|+|+||+|.|+.++ +.+||+|+||+|+|||++||+||||+||||+.++|-.++.|++ |+|.+
T Consensus 459 p~~~~G~IeF~~VsFaYP~Rp---------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts--G~Ill 527 (716)
T KOG0058|consen 459 PDHLQGVIEFEDVSFAYPTRP---------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS--GRILL 527 (716)
T ss_pred cccccceEEEEEeeeecCCCC---------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC--CeEEE
Confidence 445567999999999999874 5689999999999999999999999999999999999999988 99999
Q ss_pred CCeeCC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHcCCCccccccccC
Q 039035 85 DGKETS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK-----QRVENLVDQLGLTTTRNTHIGD 156 (646)
Q Consensus 85 ~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~ 156 (646)
||.|+. ...+|++||+|.|+|.||.. ||+|||.|+.. ..+.++.+ +.+++.+. ++++..||.||.
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGE 600 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGE 600 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHH--hCccccccccCC
Confidence 999975 35688999999999999998 99999999764 23333332 23344444 567889999996
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+. .+||||||||++|||||+.||+||||||.||+||+++...+-+.|.++.+ |+|||++.|..+ ..+.+|+|++++
T Consensus 601 kG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 KG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID 676 (716)
T ss_pred cc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc
Confidence 54 48999999999999999999999999999999999999999999999876 599999999975 346799999999
Q ss_pred CCeEEEEcChhhHHH
Q 039035 237 RGQLMFQGPPKEVTL 251 (646)
Q Consensus 237 ~G~iv~~g~~~~~~~ 251 (646)
+|++++.|..+|+..
T Consensus 677 ~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLS 691 (716)
T ss_pred CCeEEecccHHHHhh
Confidence 999999999888764
No 177
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-43 Score=326.33 Aligned_cols=220 Identities=24% Similarity=0.424 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||.++|.. ..+|++||+..+.|+++.|+|.|||||||+|+||.-+.+|+. |.|.+||+++.
T Consensus 6 ~l~v~dlHK~~G~------------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~--G~I~v~geei~ 71 (256)
T COG4598 6 ALEVEDLHKRYGE------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA--GSIRVNGEEIR 71 (256)
T ss_pred ceehhHHHhhccc------------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC--ceEEECCeEEE
Confidence 6889999988854 469999999999999999999999999999999999999987 99999998752
Q ss_pred c----------------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 039035 91 P----------------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI 154 (646)
Q Consensus 91 ~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 154 (646)
. +.+|.+.|+|+|+.++++.+||.||+.-+. ...-+.++++..++++.+|.++|+.+.+|.
T Consensus 72 ~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaP-vhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~-- 148 (256)
T COG4598 72 LKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAP-VHVLGVSKAEAIERAEKYLAKVGIAEKADA-- 148 (256)
T ss_pred eeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcc-hHhhcCCHHHHHHHHHHHHHHhCchhhhhc--
Confidence 0 124567899999999999999999997643 223346788888999999999999887764
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 155 GDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 155 g~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
+|..|||||+||++|||||+.+|+++++|||||.|||+..-++++.+++|+++|+|.+++||... ...+...++++
T Consensus 149 ---YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~f 224 (256)
T COG4598 149 ---YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIF 224 (256)
T ss_pred ---CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEE
Confidence 46789999999999999999999999999999999999999999999999999999999999965 68899999999
Q ss_pred EeCCeEEEEcChhhHHH
Q 039035 235 LARGQLMFQGPPKEVTL 251 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~~ 251 (646)
|++|.+-+.|+|+++..
T Consensus 225 Lh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 225 LHQGKIEEEGPPEQVFG 241 (256)
T ss_pred eecceecccCChHHHhc
Confidence 99999999999999853
No 178
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=386.05 Aligned_cols=219 Identities=23% Similarity=0.375 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 4 ~i~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~ 69 (501)
T PRK10762 4 LLQLKGIDKAFPG------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA--GSILYLGKEVT 69 (501)
T ss_pred eEEEeeeEEEeCC------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECC
Confidence 6899999999953 359999999999999999999999999999999999999987 99999999874
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL--GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ..++.++||+|++.+++.+||+||+.++...+. ...+.++.+++++++++.+||.+..++.+ ++|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 134679999999999999999999988643221 11234445567899999999987766654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999999999999888999999999975 578899999999999999999
Q ss_pred ChhhH
Q 039035 245 PPKEV 249 (646)
Q Consensus 245 ~~~~~ 249 (646)
+++++
T Consensus 224 ~~~~~ 228 (501)
T PRK10762 224 EVADL 228 (501)
T ss_pred CcCcC
Confidence 88765
No 179
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=348.74 Aligned_cols=224 Identities=21% Similarity=0.380 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---ceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS---LKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|.. .+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 4 LLSAQDVNIYYGD------------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEEEeeeEEEECC------------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 6899999999853 359999999999999999999999999999999999987641 2599999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..... .+..++.|
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 149 (252)
T PRK14272 72 DIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGL 149 (252)
T ss_pred EcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccC
Confidence 8642 2346679999999999999999999987654321 112334456677888888764321111 12345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++
T Consensus 150 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 150 SGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 799999999976 5778999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 228 ~~~~~~~~ 235 (252)
T PRK14272 228 HGPTDQLF 235 (252)
T ss_pred eCCHHHHH
Confidence 99988874
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=348.40 Aligned_cols=223 Identities=23% Similarity=0.368 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ..+|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 3 KFNIENLDLFYGE------------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred eEEEeccEEEECC------------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 5899999999853 35999999999999999999999999999999999998763 12499999998
Q ss_pred eCCc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 88 ETSP----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 88 ~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
++.. ...++.++|++|++.+++ .||.||+.+..... .....+..+++++++++.+++.+..... -+..+.+||
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS 147 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ-GIKDKKVLDEVVERSLRGAALWDEVKDR-LKSHAFGLS 147 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc-CCCchHHHHHHHHHHHHHcCCchhhhHH-hhcCcccCC
Confidence 8631 235678999999999887 79999998865332 1112334456788889999885422111 133456899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..
T Consensus 148 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEH 225 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 599999999975 58889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 226 g~~~~~~ 232 (249)
T PRK14253 226 DDTQVIF 232 (249)
T ss_pred CCHHHHH
Confidence 9987763
No 181
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.6e-42 Score=373.66 Aligned_cols=232 Identities=28% Similarity=0.432 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||++.|..++... ....+...+++||||++++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+.+
T Consensus 280 ll~V~~l~k~y~~~~~~~-~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~--G~i~~~g~~~~ 356 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLF-VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS--GSIIFDGQDLD 356 (539)
T ss_pred eeEeeeeeeeeccccccc-cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEEeCcccc
Confidence 789999999998653111 111245679999999999999999999999999999999999999977 99999998732
Q ss_pred --c---ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 --P---SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 --~---~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. ...++.+-+|+||+ .|.|.+||.+++......... ...++.++++.++++.+||.. .+.+++|++||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~-~~~~~~~~rv~~ll~~VgL~~----~~l~ryP~elS 431 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG-GSGAERRARVAELLELVGLPP----EFLDRYPHELS 431 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc-cchHHHHHHHHHHHHHcCCCH----HHHhcCchhcC
Confidence 1 23566788888886 589999999999987765432 235677789999999999984 24567789999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++|||.. .+..+||||++|++|++|+
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE 510 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVE 510 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999875 999999999965 6899999999999999999
Q ss_pred EcChhhHHH
Q 039035 243 QGPPKEVTL 251 (646)
Q Consensus 243 ~g~~~~~~~ 251 (646)
.|+.+++..
T Consensus 511 ~G~~~~v~~ 519 (539)
T COG1123 511 EGPTEKVFE 519 (539)
T ss_pred eCCHHHHhc
Confidence 998888754
No 182
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=352.60 Aligned_cols=223 Identities=26% Similarity=0.375 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++. ..+|+|.++|.
T Consensus 25 ~l~~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~ 92 (272)
T PRK14236 25 ALEVRNLNLFYGD------------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQ 92 (272)
T ss_pred EEEEEEEEEEECC------------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCE
Confidence 7999999999853 25899999999999999999999999999999999998741 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++. ||+||+.+...... ....++.+++++++++.+++.+...+. -+..+..|
T Consensus 93 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 169 (272)
T PRK14236 93 NIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG-INNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGL 169 (272)
T ss_pred ECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccC
Confidence 8742 2346789999999988886 99999988654321 112233456788899999986421111 12345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|+++.
T Consensus 170 S~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999976 799999999975 5778999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 248 ~g~~~~~~ 255 (272)
T PRK14236 248 YGDTDTLF 255 (272)
T ss_pred cCCHHHHh
Confidence 99987764
No 183
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.3e-42 Score=372.13 Aligned_cols=229 Identities=28% Similarity=0.454 Sum_probs=201.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--cceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG--SLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G~I~~~g~~ 88 (646)
.|+++||+++|.... +...+++||||++.+||++||+|.|||||||+.++|.|++++. ..+|+|.++|++
T Consensus 5 lL~V~nL~v~~~~~~--------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~d 76 (539)
T COG1123 5 LLEVENLTVEFATDG--------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76 (539)
T ss_pred eEEEeceEEEEecCC--------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcc
Confidence 799999999998641 2357999999999999999999999999999999999999875 236999999987
Q ss_pred CCc---c----cccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 89 TSP---S----LIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 89 ~~~---~----~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+.. . ...+.|+||+|++ .+.|-+||.+.+.-....+. ..+.++.++++.++++.+||.+.... +.+|
T Consensus 77 l~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~-~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yP 152 (539)
T COG1123 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG-KGSRAEARKRAVELLEQVGLPDPERR---DRYP 152 (539)
T ss_pred hhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHcCCCChhhh---ccCC
Confidence 531 1 1346799999997 47888999999988776653 23478888999999999999877654 6789
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
++|||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++|||+++|.+|
T Consensus 153 heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G 231 (539)
T COG1123 153 HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKG 231 (539)
T ss_pred cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECC
Confidence 99999999999999999999999999999999999999999999999985 5999999999975 688999999999999
Q ss_pred eEEEEcChhhHHHH
Q 039035 239 QLMFQGPPKEVTLH 252 (646)
Q Consensus 239 ~iv~~g~~~~~~~~ 252 (646)
++++.|+++++...
T Consensus 232 ~iVE~G~~~~i~~~ 245 (539)
T COG1123 232 EIVETGPTEEILSN 245 (539)
T ss_pred EEEEecCHHHHHhc
Confidence 99999999999764
No 184
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=346.95 Aligned_cols=223 Identities=26% Similarity=0.376 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---ceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS---LKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~G~I~~~g~ 87 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. .+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 4 KIKIRGVNFFYHK------------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred eEEEEEEEEEECC------------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 6899999999853 359999999999999999999999999999999999998751 2499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++. |++||+.+....+. ....++.++.++++++.+++.+..... .+..+.+|
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 148 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG-TTAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLAL 148 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC-CChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccC
Confidence 8642 2346789999999998885 99999998754321 111233445678888888875422111 23456789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+.++||++++|++|++++
T Consensus 149 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 149 SGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999999999999999999999999995 5899999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 227 ~~~~~~~~ 234 (251)
T PRK14249 227 YGRTGEIF 234 (251)
T ss_pred eCCHHHHH
Confidence 99988774
No 185
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-42 Score=384.39 Aligned_cols=221 Identities=25% Similarity=0.400 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||+|+|+|+.+|+..+|+|.++|+++.
T Consensus 5 ~l~~~nl~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 5 LLEMKNITKTFGG------------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eEEEeeeEEEeCC------------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 6999999999953 3599999999999999999999999999999999999986212399999999875
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL-GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
.. ..++.+|||+|++.+++.+||+||+.+....+. ...+.++..++++++++.+||.+..++.+ ++||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 31 134679999999999999999999988754321 11233445567899999999987666655 579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999975 5778999999999999999998
Q ss_pred hhhH
Q 039035 246 PKEV 249 (646)
Q Consensus 246 ~~~~ 249 (646)
++++
T Consensus 227 ~~~~ 230 (506)
T PRK13549 227 AAGM 230 (506)
T ss_pred cccC
Confidence 8765
No 186
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=351.24 Aligned_cols=223 Identities=22% Similarity=0.403 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|. ..+|+|.++|.
T Consensus 21 ~l~i~nl~~~~~~------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 88 (276)
T PRK14271 21 AMAAVNLTLGFAG------------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88 (276)
T ss_pred EEEEeeEEEEECC------------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence 7899999999963 35999999999999999999999999999999999998752 12499999998
Q ss_pred eCCc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 88 ETSP----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 88 ~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
++.. ..+++.++|++|++.+++ .||+||+.+..... ...+.++.++++.++++.+|+.+..++.. +..++.||
T Consensus 89 ~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS 165 (276)
T PRK14271 89 SIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH-KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLS 165 (276)
T ss_pred EccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCC
Confidence 8642 235678999999998888 79999998764322 11234455566788999999975332221 23457899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+++|++++|++|+++..
T Consensus 166 gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999976 589999999975 57889999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+++++.
T Consensus 244 g~~~~~~ 250 (276)
T PRK14271 244 GPTEQLF 250 (276)
T ss_pred CCHHHHH
Confidence 9988874
No 187
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=352.57 Aligned_cols=228 Identities=23% Similarity=0.409 Sum_probs=188.9
Q ss_pred CCCCCCCCc--eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----
Q 039035 2 PGKPVDFTG--GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA----- 74 (646)
Q Consensus 2 ~~~~~~~~~--~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~----- 74 (646)
+++|.+..+ .|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+
T Consensus 28 ~~~~~~~~~~~~l~i~~l~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~ 95 (285)
T PRK14254 28 SGDPAASSGETVIEARDLNVFYGD------------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAA 95 (285)
T ss_pred CCCccccCCCceEEEEEEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCC
Confidence 367777755 7999999999853 359999999999999999999999999999999999986
Q ss_pred CCcceeEEEECCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc
Q 039035 75 SGSLKGKVTLDGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT 149 (646)
Q Consensus 75 ~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 149 (646)
|++ |+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....+ .... +..++++++++.+||.+.
T Consensus 96 p~~--G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~-~~~~~~~~~l~~~~l~~~ 169 (285)
T PRK14254 96 RVE--GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ--GYDG-DIDERVEESLRRAALWDE 169 (285)
T ss_pred CCc--eEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc--CCcH-HHHHHHHHHHHHcCCCch
Confidence 445 999999988632 2356789999999988886 9999999875442 1222 345678999999998532
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 150 RNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 150 ~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
.... -+..+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++. .+.+++
T Consensus 170 i~~~-~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~ 246 (285)
T PRK14254 170 VKDQ-LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARIS 246 (285)
T ss_pred hHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhc
Confidence 1111 12345689999999999999999999999999999999999999999999999864 89999999975 577899
Q ss_pred CeEE-EEeCCeEEEEcChhhHH
Q 039035 230 DHLI-ILARGQLMFQGPPKEVT 250 (646)
Q Consensus 230 D~v~-~L~~G~iv~~g~~~~~~ 250 (646)
|+++ +|++|+++..|+++++.
T Consensus 247 dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 247 DKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred CEEEEEeeCCEEEEeCCHHHHH
Confidence 9975 67999999999987763
No 188
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=340.54 Aligned_cols=205 Identities=31% Similarity=0.494 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
+++ ||+++|++. .+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.++..
T Consensus 2 ~~~-~l~~~~~~~------------~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 63 (214)
T cd03297 2 LCV-DIEKRLPDF------------TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFD 63 (214)
T ss_pred cee-eeeEecCCe------------ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEeccc
Confidence 345 889888642 34 99999999 9999999999999999999999999877 999999987641
Q ss_pred -------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 92 -------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 92 -------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
...++.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++. +++|||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 134 (214)
T cd03297 64 SRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSG 134 (214)
T ss_pred ccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCH
Confidence 124567999999999999999999998765321 2234456789999999998665554 457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..
T Consensus 135 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 57789999999999999876
Q ss_pred c
Q 039035 244 G 244 (646)
Q Consensus 244 g 244 (646)
|
T Consensus 214 g 214 (214)
T cd03297 214 G 214 (214)
T ss_pred C
Confidence 5
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-41 Score=348.09 Aligned_cols=216 Identities=22% Similarity=0.364 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC----CcceeEEEEC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS----GSLKGKVTLD 85 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~----~~~~G~I~~~ 85 (646)
..|+++||+++| + +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++ |+|.++
T Consensus 3 ~~l~~~~l~~~~-~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~--G~i~~~ 67 (254)
T PRK10418 3 QQIELRNIALQA-A------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA--GRVLLD 67 (254)
T ss_pred cEEEEeCeEEEe-c------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcC--CEEEEC
Confidence 379999999988 2 2489999999999999999999999999999999999988 66 999999
Q ss_pred CeeCCcccc-cccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc---ccccccCCCC
Q 039035 86 GKETSPSLI-KRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT---RNTHIGDEGT 159 (646)
Q Consensus 86 g~~~~~~~~-~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~ 159 (646)
|+++..... ++.++||+|++. +.+.+|+.+++.+.+... +... .++++.++++.++|.+. .++ .+
T Consensus 68 g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~ 138 (254)
T PRK10418 68 GKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL--GKPA--DDATLTAALEAVGLENAARVLKL-----YP 138 (254)
T ss_pred CeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc--CCCh--HHHHHHHHHHHcCCCChhhhhhc-----CC
Confidence 998753333 467999999974 456789999987654322 1122 23678999999999752 333 35
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G 217 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHG 217 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999999864 899999999975 577899999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
+++..|+++++.
T Consensus 218 ~i~~~~~~~~~~ 229 (254)
T PRK10418 218 RIVEQGDVETLF 229 (254)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
No 190
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=346.64 Aligned_cols=223 Identities=24% Similarity=0.405 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~~g~ 87 (646)
.|+++|++++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~------------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 4 IISAKDVHLSYGN------------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred eEEEEeeEEEECC------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 6899999999853 359999999999999999999999999999999999986 21 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++ .||+||+.+....+ .....+..+++++++++.+++...... .-+..+++|
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~L 148 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA-GVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAF 148 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhC
Confidence 8642 234677999999998886 79999998865432 111223345678889999998521100 112345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++.
T Consensus 149 S~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 149 SGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999964 799999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 227 ~~~~~~~~ 234 (251)
T PRK14251 227 AGPTEEMF 234 (251)
T ss_pred eCCHHHHH
Confidence 99988764
No 191
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.6e-41 Score=347.81 Aligned_cols=219 Identities=21% Similarity=0.367 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee--
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-- 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-- 88 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 6 ~l~~~~l~~~~~~------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 71 (258)
T PRK11701 6 LLSVRGLTKLYGP------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA--GEVHYRMRDGQ 71 (258)
T ss_pred eEEEeeeEEEcCC------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CEEEECCcccc
Confidence 6999999999853 359999999999999999999999999999999999999977 999999987
Q ss_pred ---CCc---cc----ccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-ccccccc
Q 039035 89 ---TSP---SL----IKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIG 155 (646)
Q Consensus 89 ---~~~---~~----~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 155 (646)
+.. .. .++.++|++|++ .+++.+|+.||+.+..... ......+.+++++++++.+++.+ ..++.
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-- 148 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-GARHYGDIRATAGDWLERVEIDAARIDDL-- 148 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHcCCChhHHhCC--
Confidence 532 11 245699999997 3677889999997653221 11122344567889999999963 44444
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
++.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++
T Consensus 149 ---~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~ 224 (258)
T PRK11701 149 ---PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLV 224 (258)
T ss_pred ---CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 4689999999999999999999999999999999999999999999999865 899999999975 57789999999
Q ss_pred EeCCeEEEEcChhhHH
Q 039035 235 LARGQLMFQGPPKEVT 250 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~ 250 (646)
|++|++++.|+++++.
T Consensus 225 l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 225 MKQGRVVESGLTDQVL 240 (258)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 192
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-41 Score=349.79 Aligned_cols=221 Identities=20% Similarity=0.329 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----CCcceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-----SGSLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-----~~~~~G~I~~~ 85 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |++ |+|.++
T Consensus 24 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~--G~i~~~ 89 (271)
T PRK14238 24 VFDTQNLNLWYGE------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTT--GKILYR 89 (271)
T ss_pred EEEEeeeEEEECC------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCc--eeEEEC
Confidence 7999999999853 258999999999999999999999999999999999986 455 999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|+++.. ..+++.++|++|++.+++. ||+||+.++...+. ..+.+..++.+.++++.+++.+..... -+..++
T Consensus 90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~ 166 (271)
T PRK14238 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHG-IKDKKTLDEIVEKSLRGAAIWDELKDR-LHDNAY 166 (271)
T ss_pred CEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcchHHHH-HhcCcc
Confidence 988632 2346789999999988875 99999998754321 112223345677888887653211111 133457
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++
T Consensus 167 ~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYV 244 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 799999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
+..|+++++.
T Consensus 245 ~~~g~~~~~~ 254 (271)
T PRK14238 245 NEYDDTDKIF 254 (271)
T ss_pred EEeCCHHHHH
Confidence 9999988763
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=347.06 Aligned_cols=225 Identities=22% Similarity=0.355 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|+ ..+|+|.++|+
T Consensus 7 ~l~~~nl~~~~~~------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYYDT------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEeCC------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 7999999999853 25899999999999999999999999999999999999874 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|+..+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~L 151 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG-WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDL 151 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccC
Confidence 8631 234677999999988888 899999988653321 113334456788999999985422211 23445789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC----
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR---- 237 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~---- 237 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.++||++++|++
T Consensus 152 SgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~ 230 (261)
T PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENR 230 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCc
Confidence 99999999999999999999999999999999999999999999975 5899999999975 68899999999999
Q ss_pred -CeEEEEcChhhHHH
Q 039035 238 -GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 -G~iv~~g~~~~~~~ 251 (646)
|++++.|+++++..
T Consensus 231 ~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 231 IGQLVEFGLTKKIFN 245 (261)
T ss_pred CceEEEeCCHHHHHh
Confidence 99999999998743
No 194
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-41 Score=357.39 Aligned_cols=227 Identities=22% Similarity=0.363 Sum_probs=189.5
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEEC
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLD 85 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~ 85 (646)
.+.|+++|++++|... .+.+|+|+|++|++||+++|+|||||||||||++|+|+..+. ..+|+|.++
T Consensus 78 ~~~i~~~nls~~y~~~----------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred CceEEEEeeEEEecCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3489999999999632 235999999999999999999999999999999999998531 124999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS-WSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
|+++.. ..+++.++||+|++.+++ .|++||+.|+.... ..+ ++..++.++++++.++|.+..++.++ +.+
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAG 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCc
Confidence 998752 245778999999998886 69999999865332 222 22234557888999988644444443 456
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.++||++++|++|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~ 301 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGW 301 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999876 699999999975 5778899999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 302 i~e~g~~~~l~~ 313 (329)
T PRK14257 302 IEEAGETKTIFI 313 (329)
T ss_pred EEEeCCHHHHhc
Confidence 999999999853
No 195
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=347.46 Aligned_cols=223 Identities=22% Similarity=0.390 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---ceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS---LKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~G~I~~~g~ 87 (646)
.|+++|++++|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+++. .+|+|.++|+
T Consensus 7 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYYNT------------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEECC------------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 6899999999853 259999999999999999999999999999999999987531 2599999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++ +||+||+.+....+. ..++.+..++++++++.+|+.+.... ..+..+++|
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~L 151 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA-KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGL 151 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccC
Confidence 8642 234568999999998888 899999988754321 12333445678889999998532111 123446789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe-----C
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA-----R 237 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-----~ 237 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +
T Consensus 152 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~ 229 (259)
T PRK14260 152 SGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRI 229 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCC
Confidence 99999999999999999999999999999999999999999999975 699999999976 5889999999998 5
Q ss_pred CeEEEEcChhhHH
Q 039035 238 GQLMFQGPPKEVT 250 (646)
Q Consensus 238 G~iv~~g~~~~~~ 250 (646)
|++++.|+++++.
T Consensus 230 G~i~~~~~~~~~~ 242 (259)
T PRK14260 230 GQMVEFGVTTQIF 242 (259)
T ss_pred ceEEEeCCHHHHh
Confidence 9999999998874
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-41 Score=340.31 Aligned_cols=211 Identities=28% Similarity=0.491 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|+++.|+.+. +++.+|+|+||++++||+++|+||||||||||+++|+|.++|++ |+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~~--------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~--G~i~~~g~~~~~ 71 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE--GSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEEEccCCC--------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEEhHh
Confidence 78999999986421 12569999999999999999999999999999999999999877 999999998742
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 92 ------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 92 ------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
...++.++|++|++.+++.+|+.||+.+...... ....++.+++++++++.+||.+..++. ++.||||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G 145 (220)
T TIGR02982 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP-NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGG 145 (220)
T ss_pred cCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHH
Confidence 1246789999999999999999999998764321 234455567899999999998666655 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ +.++||++++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999986 5899999999974 4579999999999986
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=382.68 Aligned_cols=219 Identities=21% Similarity=0.353 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+.+|++ |+|.++|+++.
T Consensus 5 ~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~--G~i~~~g~~i~ 70 (510)
T PRK09700 5 YISMAGIGKSFGP------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK--GTITINNINYN 70 (510)
T ss_pred eEEEeeeEEEcCC------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc--cEEEECCEECC
Confidence 6999999999953 359999999999999999999999999999999999999877 99999999875
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHcc--CCC---CCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFR--LGP---ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~--~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
.. ..++.++||+|++.+++.+||+||+.++.... ..+ .+.++.+++++++++.+||.+..++.+ ++
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----AN 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hh
Confidence 31 12457999999999999999999998754211 001 123445678899999999987666655 57
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEe
Confidence 9999999999999999999999999999999999999999999999888999999999975 578899999999999999
Q ss_pred EEcChhhH
Q 039035 242 FQGPPKEV 249 (646)
Q Consensus 242 ~~g~~~~~ 249 (646)
+.|+++++
T Consensus 225 ~~g~~~~~ 232 (510)
T PRK09700 225 CSGMVSDV 232 (510)
T ss_pred eecchhhC
Confidence 99998775
No 198
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.8e-41 Score=332.81 Aligned_cols=190 Identities=50% Similarity=0.802 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~g~~ 88 (646)
.|+++||+++|+.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.+ |+|.++|++
T Consensus 3 ~l~~~~ls~~~~~~~~------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~--G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPS------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS--GEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCC------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc--eEEEECCEe
Confidence 5899999999964210 01246999999999999999999999999999999999999 8876 999999998
Q ss_pred CCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 89 TSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 89 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+.....++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------------~LS~G~~q 118 (194)
T cd03213 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------------GLSGGERK 118 (194)
T ss_pred CchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------------cCCHHHHH
Confidence 764455678999999999999999999997643110 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++..++.++||++++|++|++++.|
T Consensus 119 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 119 RVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998779999999999865677899999999999998764
No 199
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=344.25 Aligned_cols=223 Identities=25% Similarity=0.375 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CC-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SG-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~-~~~G~I~~~g~ 87 (646)
.|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+ ..+|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 72 (252)
T PRK14255 5 IITSSDVHLFYGK------------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ 72 (252)
T ss_pred eEEEEeEEEEECC------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE
Confidence 6899999999853 359999999999999999999999999999999999865 42 12499999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++ .||+||+.+....+. ....+..++++.+.++.+++....... -+..+++|
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~L 149 (252)
T PRK14255 73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG-VKDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSL 149 (252)
T ss_pred EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccC
Confidence 8632 234678999999998888 699999998654321 112223345677888888874221111 13345789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++.
T Consensus 150 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 150 SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIE 227 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 589999999975 5788999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|++.++.
T Consensus 228 ~~~~~~~~ 235 (252)
T PRK14255 228 FADTKQMF 235 (252)
T ss_pred eCCHHHHh
Confidence 99988764
No 200
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.6e-41 Score=337.37 Aligned_cols=199 Identities=30% Similarity=0.479 Sum_probs=171.9
Q ss_pred EEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC---
Q 039035 14 FSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS--- 90 (646)
Q Consensus 14 ~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~--- 90 (646)
++||++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 1 i~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~~~ 66 (206)
T TIGR03608 1 LKNISKKFGD------------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS--GQVYLNGKETPPLN 66 (206)
T ss_pred CcceEEEECC------------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEEccccc
Confidence 4688888853 359999999999999999999999999999999999999877 99999999853
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.++|++|++.+++.+|++||+.+..... .....+..++++++++.+||++..++.+ ++|||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~ 139 (206)
T TIGR03608 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK--KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGE 139 (206)
T ss_pred hhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHH
Confidence 1 124568999999999999999999999865432 2334455678899999999987666654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. . .+.||++++|
T Consensus 140 ~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 140 QQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999999999877999999999975 3 4689999875
No 201
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.3e-41 Score=342.31 Aligned_cols=203 Identities=25% Similarity=0.402 Sum_probs=174.2
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC----CcceeEEEECCeeCCcccc-cccEEEEccCCC--CCCC
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS----GSLKGKVTLDGKETSPSLI-KRTSAYIMQEDR--LFPM 110 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~----~~~~G~I~~~g~~~~~~~~-~~~i~yv~Q~~~--l~~~ 110 (646)
+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++ |+|.++|+++..... ++.++|++|++. +.+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~--G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS--GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccc--cEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999988 66 999999998753323 357999999984 5677
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc---cccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 039035 111 LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT---TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDE 187 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDE 187 (646)
+|+.|++.+..... .....+.+++++++++.+||.+ ..++. ++.|||||||||+||++|+.+|++|+|||
T Consensus 79 ~t~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSL--GKLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 89999998765432 1122344567899999999973 33433 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
||+|||+.++..+.+.|++++++ |+|||+++|+++ ++..++|++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999874 899999999975 578899999999999999999988774
No 202
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.1e-41 Score=379.35 Aligned_cols=214 Identities=23% Similarity=0.382 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 11 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 76 (510)
T PRK15439 11 LLCARSISKQYSG------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCA 76 (510)
T ss_pred eEEEEeEEEEeCC------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECC
Confidence 7999999999953 359999999999999999999999999999999999999977 99999998874
Q ss_pred cc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 PS---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
.. . .++.+|||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+ ++|||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~ 145 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVAD 145 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHH
Confidence 21 1 235699999999999999999999875321 1334567899999999987666654 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCh
Confidence 99999999999999999999999999999999999999999888999999999975 57889999999999999999998
Q ss_pred hhHH
Q 039035 247 KEVT 250 (646)
Q Consensus 247 ~~~~ 250 (646)
+++.
T Consensus 225 ~~~~ 228 (510)
T PRK15439 225 ADLS 228 (510)
T ss_pred HHcC
Confidence 7753
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=350.82 Aligned_cols=221 Identities=21% Similarity=0.391 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C---CcceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--S---GSLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~---~~~~G~I~~~ 85 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++ |+|.++
T Consensus 39 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~--G~I~~~ 104 (286)
T PRK14275 39 HVVAKNFSIYYGE------------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTT--GALMFD 104 (286)
T ss_pred EEEEeeeEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCc--eEEEEC
Confidence 7999999999853 248999999999999999999999999999999999854 3 55 999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|+++.. ..+++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+.+.... .-+..++
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~ 181 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG-INDKKQLEEIVEKSLRKAALWDEVSD-RLDKNAL 181 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC-CCcHHHHHHHHHHHHHHhCCccchhh-HhhCChh
Confidence 988642 1346789999999988885 99999998754321 11223345678889999987421100 1123456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVL 259 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999975 689999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
+..|+++++.
T Consensus 260 ~~~g~~~~~~ 269 (286)
T PRK14275 260 VEHAPTAQLF 269 (286)
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.3e-42 Score=347.37 Aligned_cols=215 Identities=27% Similarity=0.498 Sum_probs=174.3
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|+++.|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~~~ 68 (237)
T cd03252 1 ITFEHVRFRYKPD----------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN--GRVLVDGHDLAL 68 (237)
T ss_pred CEEEEEEEecCCC----------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--CEEEECCeehHh
Confidence 4789999998532 2459999999999999999999999999999999999999977 999999987642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCCC
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK-----QRVENLVDQL--GLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 161 (646)
..+++.++|++|++.+++ .||.||+.+... .....+.. ...+++++.+ ++.+..+ ..+++
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~ 138 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP----GMSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAG 138 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCc
Confidence 235678999999988775 699999987431 11111111 1223444444 3333222 34578
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++.. + +.||++++|++|+++
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIV 215 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999974 8999999999864 5 469999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
+.|+++++..
T Consensus 216 ~~~~~~~~~~ 225 (237)
T cd03252 216 EQGSHDELLA 225 (237)
T ss_pred EEcCHHHHHh
Confidence 9999887643
No 205
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=350.49 Aligned_cols=219 Identities=25% Similarity=0.422 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~-----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 72 (272)
T PRK15056 6 GIVVNDVTVTWRNG-----------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS--GKISILGQPTR 72 (272)
T ss_pred eEEEEeEEEEecCC-----------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEhH
Confidence 68999999999531 359999999999999999999999999999999999999977 99999999875
Q ss_pred cccccccEEEEccCCCCC--CCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 PSLIKRTSAYIMQEDRLF--PMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
....++.++|++|++.+. ...+++|++.++...... .....+.+++++++++.+||.+..++.+ ..|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~ 147 (272)
T PRK15056 73 QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQ 147 (272)
T ss_pred HhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHH
Confidence 322234699999997652 234789988654211000 1112334456788999999987766655 5799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+++++ +|++++.|++
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~ 225 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPT 225 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCH
Confidence 99999999999999999999999999999999999999999888999999999975 578899999877 8999999988
Q ss_pred hhH
Q 039035 247 KEV 249 (646)
Q Consensus 247 ~~~ 249 (646)
+++
T Consensus 226 ~~~ 228 (272)
T PRK15056 226 ETT 228 (272)
T ss_pred Hhc
Confidence 775
No 206
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=4.6e-41 Score=347.72 Aligned_cols=228 Identities=22% Similarity=0.332 Sum_probs=188.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+...... .+.++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~---~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s--G~i~~~g~~~~ 77 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSG---KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ--GNVSWRGEPLA 77 (268)
T ss_pred eEEEeceEEEecCCcccc---ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEecc
Confidence 589999999996310000 0012469999999999999999999999999999999999998876 99999998764
Q ss_pred c------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 039035 91 P------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 161 (646)
. ...++.++|++|++ .+++..|+.|++.+.... .......+..++++++++.+|+. +..++. ++.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~ 151 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH-LLSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQ 151 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Ccc
Confidence 2 12467899999997 467789999999765431 11233445566889999999996 344544 467
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQI 230 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 57789999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 231 ~~~g~~~~~~ 240 (268)
T PRK10419 231 VETQPVGDKL 240 (268)
T ss_pred eeeCChhhcc
Confidence 9999987764
No 207
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.1e-42 Score=392.32 Aligned_cols=220 Identities=27% Similarity=0.503 Sum_probs=187.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
|.++++|++|+|+.. +..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|.. |+|++||.++
T Consensus 470 g~I~~~nvsf~y~~~----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~--G~I~~dg~dl 537 (709)
T COG2274 470 GEIEFENVSFRYGPD----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ--GRILLDGVDL 537 (709)
T ss_pred ceEEEEEEEEEeCCC----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEeH
Confidence 489999999999764 2369999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQ-----RVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+ ...+|+.+|||+||+.+|.. |++||+.++. +..+.++..+ -+++.+. .+....||.+|+ ...+
T Consensus 538 ~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~ 609 (709)
T COG2274 538 NDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----PEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGAN 609 (709)
T ss_pred HhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----CCCCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCC
Confidence 4 45789999999999999987 9999998753 2333222211 1233333 344557888875 4468
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++|||||+++|+||+||||||+||+.+...+.+.|.++.+ |+|+|+++|.++ ..+.||+|++|++|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999875 799999999975 45789999999999999
Q ss_pred EEcChhhHHHH
Q 039035 242 FQGPPKEVTLH 252 (646)
Q Consensus 242 ~~g~~~~~~~~ 252 (646)
.+|+.+|+...
T Consensus 687 ~~gs~~ell~~ 697 (709)
T COG2274 687 EQGSHEELLAQ 697 (709)
T ss_pred ccCCHHHHHHh
Confidence 99999998653
No 208
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-41 Score=344.12 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS--G-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~G~I~~~g~ 87 (646)
.|+++|+++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++ . ..+|+|.++|+
T Consensus 6 ~i~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 6 ILSTKNLNLWYGE------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eEEEeeeEEEECC------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 7999999999853 3599999999999999999999999999999999998753 2 12599999999
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ...++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+...+. .+..++.|
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 150 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG-EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSL 150 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC-CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhC
Confidence 8642 2346779999999988885 99999998765431 112334456788899999885321111 13345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++.
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 699999999975 5778999999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 229 ~g~~~~~~ 236 (253)
T PRK14261 229 FDKTTQIF 236 (253)
T ss_pred cCCHHHHH
Confidence 99988764
No 209
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-41 Score=331.86 Aligned_cols=187 Identities=44% Similarity=0.702 Sum_probs=164.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--CCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--SGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~~~~G~I~~~g~~ 88 (646)
.|+++|+++.|+... .++.+|+|+|+++++||+++|+||||||||||+++|+|+.. +++ |+|.++|++
T Consensus 3 ~l~~~~l~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~--G~i~~~g~~ 72 (192)
T cd03232 3 VLTWKNLNYTVPVKG--------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT--GEILINGRP 72 (192)
T ss_pred EEEEeeeEEEecCCC--------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcc--eEEEECCEe
Confidence 689999999996421 12469999999999999999999999999999999999864 555 999999998
Q ss_pred CCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 89 TSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 89 ~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+. ...++.++|++|++.+++.+||+||+.+...+ + +|||||||
T Consensus 73 ~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------------~------------------~LSgGe~q 115 (192)
T cd03232 73 LD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL------------------R------------------GLSVEQRK 115 (192)
T ss_pred hH-HHhhhceEEecccCccccCCcHHHHHHHHHHH------------------h------------------cCCHHHhH
Confidence 75 44567899999999999999999999874311 0 49999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-CeEEEEc
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR-GQLMFQG 244 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv~~g 244 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++.++.+.||++++|++ |++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999999999878999999999986446789999999999 9999865
No 210
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.1e-41 Score=340.00 Aligned_cols=210 Identities=31% Similarity=0.540 Sum_probs=175.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~ 69 (220)
T cd03245 2 RIEFRNVSFSYPNQ----------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS--GSVLLDGTDIR 69 (220)
T ss_pred eEEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--CeEEECCEEhH
Confidence 58899999998532 2459999999999999999999999999999999999998877 99999998764
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CCCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG------DEGTRG 161 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~ 161 (646)
. ...++.++|++|++.+++ .||.||+.+... ... .++++++++.+++.+..++... ...+.+
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 2 234568999999998887 599999976421 111 2346678888888765554321 123468
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|+++
T Consensus 141 LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999999999764 89999999976 44 799999999999998
Q ss_pred EEc
Q 039035 242 FQG 244 (646)
Q Consensus 242 ~~g 244 (646)
+.|
T Consensus 218 ~~~ 220 (220)
T cd03245 218 ADG 220 (220)
T ss_pred ecC
Confidence 754
No 211
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-41 Score=346.33 Aligned_cols=221 Identities=23% Similarity=0.332 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++. ..+|+|.++|+
T Consensus 20 ~l~~~nl~~~~~~------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 20 VFEVEGVKVFYGG------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR 87 (274)
T ss_pred eEEEeeEEEEeCC------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE
Confidence 8999999999853 35999999999999999999999999999999999997531 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++. ||.||+.+....+ ... .+.++.+++.++.+++....... -+..+..|
T Consensus 88 ~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 162 (274)
T PRK14265 88 NIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN--GYK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTAL 162 (274)
T ss_pred ecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc--Cch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccC
Confidence 8632 2346789999999988875 9999998865432 111 12334567788888874221111 13345789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe------
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA------ 236 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------ 236 (646)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|+
T Consensus 163 SgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~ 240 (274)
T PRK14265 163 SGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEY 240 (274)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999975 799999999975 5888999999998
Q ss_pred ---CCeEEEEcChhhHH
Q 039035 237 ---RGQLMFQGPPKEVT 250 (646)
Q Consensus 237 ---~G~iv~~g~~~~~~ 250 (646)
+|++++.|+++++.
T Consensus 241 ~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 241 GKRRGKLVEFSPTEQMF 257 (274)
T ss_pred cccCceEEEeCCHHHHH
Confidence 89999999998875
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.8e-41 Score=342.46 Aligned_cols=219 Identities=24% Similarity=0.396 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee--
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-- 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-- 88 (646)
.|+++||++.|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++
T Consensus 3 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 68 (253)
T TIGR02323 3 LLQVSGLSKSYGG------------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTATYIMRSGA 68 (253)
T ss_pred eEEEeeeEEEeCC------------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEEeccccc
Confidence 5899999999853 258999999999999999999999999999999999999877 999999976
Q ss_pred ---CCc---c----cccccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-ccccccc
Q 039035 89 ---TSP---S----LIKRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIG 155 (646)
Q Consensus 89 ---~~~---~----~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 155 (646)
+.. . ..++.++|++|++. +.+.+|+.||+.+.... .......+.+++++++++.+|+.+ ..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IGARHYGNIRAAAHDWLEEVEIDPTRIDDL-- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hcccchHHHHHHHHHHHHHcCCChhhhhcC--
Confidence 431 1 12356999999974 45678999999764321 111112234567899999999963 45544
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++
T Consensus 146 ---~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~ 221 (253)
T TIGR02323 146 ---PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLV 221 (253)
T ss_pred ---chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 4679999999999999999999999999999999999999999999998764 899999999975 57789999999
Q ss_pred EeCCeEEEEcChhhHH
Q 039035 235 LARGQLMFQGPPKEVT 250 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~ 250 (646)
|++|++++.|+++++.
T Consensus 222 l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 222 MQQGRVVESGLTDQVL 237 (253)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999987764
No 213
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-41 Score=345.12 Aligned_cols=221 Identities=26% Similarity=0.383 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--C-cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS--G-SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~--~-~~~G~I~~~g~ 87 (646)
.|+++||+++|+. +.+|+|+|+++++||+++|+||||||||||+++|+|+..+ . ..+|+|.++|+
T Consensus 10 ~l~i~~v~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 10 VLRTENLNVYYGS------------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEEEeeeEEEECC------------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 6999999999853 2589999999999999999999999999999999998752 1 12499999998
Q ss_pred eCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 88 ETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 88 ~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
++.. ..+++.++|++|++.+++. ||.||+.+....+ ... .+..++++++++.+++.+..+.. .+..+++|
T Consensus 78 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~L 152 (264)
T PRK14243 78 NLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARIN--GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSL 152 (264)
T ss_pred EccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhc--Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccC
Confidence 7631 2346789999999988884 9999998865432 111 23345677788888875321111 13345689
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe------
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA------ 236 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------ 236 (646)
|||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+
T Consensus 153 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~ 230 (264)
T PRK14243 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEG 230 (264)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999976 589999999975 5889999999998
Q ss_pred ---CCeEEEEcChhhHH
Q 039035 237 ---RGQLMFQGPPKEVT 250 (646)
Q Consensus 237 ---~G~iv~~g~~~~~~ 250 (646)
+|++++.|+++++.
T Consensus 231 ~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 231 GGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cccCceEEEeCCHHHHH
Confidence 79999999998874
No 214
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=384.59 Aligned_cols=234 Identities=22% Similarity=0.337 Sum_probs=195.0
Q ss_pred CCCCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE
Q 039035 3 GKPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV 82 (646)
Q Consensus 3 ~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 82 (646)
++.......|+++||+++|.... .+..+|+||||++++||++||+||||||||||+++|+|+++|++ |+|
T Consensus 4 ~~~~~~~~~l~v~~l~~~y~~~~--------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~--G~i 73 (623)
T PRK10261 4 SDELDARDVLAVENLNIAFMQEQ--------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG--GLV 73 (623)
T ss_pred cccCCCCceEEEeceEEEecCCC--------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC--eEE
Confidence 45555666899999999996421 12469999999999999999999999999999999999999877 999
Q ss_pred EECCeeCC-------------cc---ccc-ccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 039035 83 TLDGKETS-------------PS---LIK-RTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQ 143 (646)
Q Consensus 83 ~~~g~~~~-------------~~---~~~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~ 143 (646)
.++|.++. .. .++ +.+|||+|++ .+++.+||.||+.+..+... ..+..+.+++++++++.
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~ 152 (623)
T PRK10261 74 QCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ-GASREEAMVEAKRMLDQ 152 (623)
T ss_pred EECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Confidence 99986431 00 122 4799999997 68899999999999865421 24455666789999999
Q ss_pred cCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCc
Q 039035 144 LGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPS 222 (646)
Q Consensus 144 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 222 (646)
+||.+.. ...+.++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++.
T Consensus 153 ~gL~~~~--~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 153 VRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred CCCCChh--hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 9996321 1113345789999999999999999999999999999999999999999999999865 999999999975
Q ss_pred HHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 223 SRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 223 ~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
.+.++||+|++|++|++++.|+++++.
T Consensus 231 -~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 231 -VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred -HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 578899999999999999999988764
No 215
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-40 Score=340.60 Aligned_cols=220 Identities=23% Similarity=0.316 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR--IASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~--~~~~~~~G~I~~~g~~ 88 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+ .+|.+ |+|.++|.+
T Consensus 7 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~--G~i~~~g~~ 72 (252)
T CHL00131 7 ILEIKNLHASVNE------------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILE--GDILFKGES 72 (252)
T ss_pred eEEEEeEEEEeCC------------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCC--ceEEECCEE
Confidence 6999999999853 2599999999999999999999999999999999998 45665 999999998
Q ss_pred CCc---ccccc-cEEEEccCCCCCCCCCHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 039035 89 TSP---SLIKR-TSAYIMQEDRLFPMLTVFETLMFAADFRL-----GPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~-~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 158 (646)
+.. ...++ .++|++|++.+++.+|+.|++.+...... ......+..++++++++.+|+. +..++.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 149 (252)
T CHL00131 73 ILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN--- 149 (252)
T ss_pred cccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc---
Confidence 643 12222 48899999999999999999987543211 0112223446788999999996 34444432
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh-cCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL-LDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~ 237 (646)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++
T Consensus 150 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~ 227 (252)
T CHL00131 150 -EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN 227 (252)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC
Confidence 259999999999999999999999999999999999999999999999878999999999975 45555 899999999
Q ss_pred CeEEEEcChhhH
Q 039035 238 GQLMFQGPPKEV 249 (646)
Q Consensus 238 G~iv~~g~~~~~ 249 (646)
|++++.|+++.+
T Consensus 228 G~i~~~~~~~~~ 239 (252)
T CHL00131 228 GKIIKTGDAELA 239 (252)
T ss_pred CEEEEecChhhh
Confidence 999999988743
No 216
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-41 Score=343.46 Aligned_cols=215 Identities=27% Similarity=0.466 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~ 68 (234)
T cd03251 1 VEFKNVTFRYPGD----------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS--GRILIDGHDVRD 68 (234)
T ss_pred CEEEEEEEEeCCC----------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC--CEEEECCEEhhh
Confidence 4789999998542 1359999999999999999999999999999999999999977 999999987642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCCC
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK-----QRVENLVDQL--GLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 161 (646)
...++.++|++|++.+++ .||+||+.+.... ....+.. ..++++++.+ ++.+..+. .+..
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~ 138 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVK 138 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCc
Confidence 234678999999998887 6999999875321 1111111 1245555555 55443333 3568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||++||++. ++.. ||++++|++|+++
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEe
Confidence 999999999999999999999999999999999999999999999974 899999999986 4554 9999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
..|+++++..
T Consensus 216 ~~~~~~~~~~ 225 (234)
T cd03251 216 ERGTHEELLA 225 (234)
T ss_pred eeCCHHHHHH
Confidence 9998877643
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-41 Score=341.30 Aligned_cols=215 Identities=24% Similarity=0.418 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+.. +.+++|+|+++++||+++|+|||||||||||++|+|+.+|.+ |+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~-----------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 68 (229)
T cd03254 2 EIEFENVNFSYDEK-----------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK--GQILIDGIDIR 68 (229)
T ss_pred eEEEEEEEEecCCC-----------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--CEEEECCEeHH
Confidence 58999999998531 359999999999999999999999999999999999999877 99999998764
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCCCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH------IGDEGTRG 161 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~ 161 (646)
. ..+++.++|++|++.+++. ||+||+.+.... .. .+++++.++.+++.+..+.. ..+..+++
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd03254 69 DISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139 (229)
T ss_pred HcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC----CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc
Confidence 2 2456779999999988876 999999875321 11 12334444444443222111 01234578
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||++||++.. +. .||++++|++|+++
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~ 216 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-IK-NADKILVLDDGKII 216 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-Hh-hCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999996 58999999999754 54 59999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
+.|+.+++.
T Consensus 217 ~~~~~~~~~ 225 (229)
T cd03254 217 EEGTHDELL 225 (229)
T ss_pred EeCCHHHHH
Confidence 999877664
No 218
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.1e-41 Score=413.15 Aligned_cols=224 Identities=26% Similarity=0.387 Sum_probs=201.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+++ ++.+|+|||+.|++||++||+||||||||||+|+|+|.++|++ |+|.++|+++.
T Consensus 1937 ~L~v~nLsK~Y~~~----------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts--G~I~i~G~~i~ 2004 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT----------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS--GDATVAGKSIL 2004 (2272)
T ss_pred eEEEEEEEEEECCC----------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc--cEEEECCEECc
Confidence 79999999999642 2469999999999999999999999999999999999999987 99999999874
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+.+|+++ ++|||||||
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~--g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKq 2077 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR--GVPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKR 2077 (2272)
T ss_pred chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 2 234678999999999999999999999877654 3445555678899999999988777765 479999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.++|||+++|++|+++..|++++
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~ 2156 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQH 2156 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999888999999999965 6889999999999999999999999
Q ss_pred HHHHHH
Q 039035 249 VTLHVN 254 (646)
Q Consensus 249 ~~~~f~ 254 (646)
+...|.
T Consensus 2157 Lk~~~g 2162 (2272)
T TIGR01257 2157 LKSKFG 2162 (2272)
T ss_pred HHHHhC
Confidence 987764
No 219
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.6e-41 Score=334.40 Aligned_cols=203 Identities=25% Similarity=0.340 Sum_probs=177.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++|+++++++ +.+++++|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++
T Consensus 10 ~~l~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~i 75 (214)
T PRK13543 10 PLLAAHALAFSRNE------------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTA 75 (214)
T ss_pred ceEEEeeEEEecCC------------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC--eeEEECCEEc
Confidence 37999999998853 359999999999999999999999999999999999999977 9999999987
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
.....++.++|++|++.+++.+|+.||+.+....+ .. ...+.++++++.++|.+..++.+ ..||||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 145 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH--GR---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKR 145 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc--CC---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHH
Confidence 64334567999999999999999999998865432 11 12346788999999987666654 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. ++.+++|++++++.
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 146 LALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999888999999999975 58899999999864
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.4e-41 Score=375.89 Aligned_cols=221 Identities=23% Similarity=0.360 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||+++|+|+.+|+..+|+|.++|+++.
T Consensus 1 ~l~i~~l~~~~~~------------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 1 LLEMKGIVKTFGG------------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred CEEEEeEEEEeCC------------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 3789999999853 3599999999999999999999999999999999999886212399999999875
Q ss_pred cc----cccccEEEEccCCCCCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCCCC
Q 039035 91 PS----LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTR-NTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LS 163 (646)
.. ..++.+|||+|++.+++.+||.||+.+....... ....++.+++++++++.+||.+.. ++. +++||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 31 1346799999999999999999999886543211 123344557789999999997654 333 45799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeee
Confidence 99999999999999999999999999999999999999999999888999999999975 57889999999999999999
Q ss_pred cChhhH
Q 039035 244 GPPKEV 249 (646)
Q Consensus 244 g~~~~~ 249 (646)
|++++.
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 887654
No 221
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=342.27 Aligned_cols=224 Identities=25% Similarity=0.422 Sum_probs=185.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC---
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG--- 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g--- 86 (646)
..++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|
T Consensus 9 ~~i~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~--G~v~~~G~~~ 74 (257)
T PRK14246 9 DVFNISRLYLYIND------------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD--SKIKVDGKVL 74 (257)
T ss_pred hheeeeeEEEecCC------------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--CceeEcCEEE
Confidence 47999999999854 358999999999999999999999999999999999998865 5555554
Q ss_pred ---eeCC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 87 ---KETS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 87 ---~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
+++. ....++.++|++|++.+++.+||+||+.+..... ....+++.+++++++++.+++.+..... -+..++
T Consensus 75 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 152 (257)
T PRK14246 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH-GIKEKREIKKIVEECLRKVGLWKEVYDR-LNSPAS 152 (257)
T ss_pred ECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcc
Confidence 4442 1235678999999999999999999999875432 1123345557789999999996421111 123456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|++|++
T Consensus 153 ~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGEL 230 (257)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999965 699999999975 57789999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
+..|+++++..
T Consensus 231 ~~~g~~~~~~~ 241 (257)
T PRK14246 231 VEWGSSNEIFT 241 (257)
T ss_pred EEECCHHHHHh
Confidence 99999887653
No 222
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.9e-41 Score=344.51 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=173.8
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|+++.|++. .++.+|+|+||++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~---------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~ 69 (238)
T cd03249 1 IEFKNVSFRYPSR---------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS--GEILLDGVDIRD 69 (238)
T ss_pred CeEEEEEEecCCC---------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC--CEEEECCEehhh
Confidence 4789999998642 12469999999999999999999999999999999999999877 999999987642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCCCCCC
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQ-----RVENLVDQL--GLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~ 161 (646)
...++.++|++|++.+++ .||+||+.+.... ...++..+ .+.++++.+ ++.... +..++.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~ 139 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD----ATDEEVEEAAKKANIHDFIMSLPDGYDTLV-----GERGSQ 139 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC----CCHHHHHHHHHHcChHHHHHhhccccceee-----ccCCcc
Confidence 234567999999998876 5999999875321 11111111 122233333 332222 234578
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. ++. .||++++|++|+++
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVV 216 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 7999999999976 454 89999999999999
Q ss_pred EEcChhhHHHH
Q 039035 242 FQGPPKEVTLH 252 (646)
Q Consensus 242 ~~g~~~~~~~~ 252 (646)
+.|+.+++...
T Consensus 217 ~~~~~~~~~~~ 227 (238)
T cd03249 217 EQGTHDELMAQ 227 (238)
T ss_pred EeCCHHHHhhc
Confidence 99988776543
No 223
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.6e-41 Score=391.98 Aligned_cols=213 Identities=28% Similarity=0.424 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++||+++|+.. ++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||+++
T Consensus 450 ~~I~~~nvsf~Y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~--G~I~idg~~i 517 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD----------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDL 517 (686)
T ss_pred ceEEEEEEEEEcCCC----------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CEEEECCEEc
Confidence 479999999999642 2469999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 159 (646)
. ...+|+.+|||+|++.+|+. |++||+.++.. .+ ++++.++++..|+.+ ..||.+|+. .
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~-----~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP-----LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-G 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-C
Confidence 5 35688999999999999987 99999987531 22 234566677666653 457888754 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++||+++ ..+.+|+|++|++|+
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999886 589999999975 346799999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
+++.|+.+++.
T Consensus 662 iv~~G~~~~Ll 672 (686)
T TIGR03797 662 VVQQGTYDELM 672 (686)
T ss_pred EEEECCHHHHH
Confidence 99999998875
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-40 Score=341.93 Aligned_cols=222 Identities=23% Similarity=0.322 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDG 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g 86 (646)
..+.+++++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|. ..+|+|.++|
T Consensus 7 ~~~~~~~~~~~~~~------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 74 (261)
T PRK14263 7 IVMDCKLDKIFYGN------------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLG 74 (261)
T ss_pred ceEEEEeEEEEeCC------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECC
Confidence 37889999988853 35999999999999999999999999999999999999761 1249999999
Q ss_pred eeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 87 KETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 87 ~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+... +..++.
T Consensus 75 ~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~ 149 (261)
T PRK14263 75 QDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR--Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLS 149 (261)
T ss_pred EeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC--c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCccc
Confidence 98642 23467799999999887 5899999998765321 1 2334567899999999864332222 235678
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe-----
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA----- 236 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~----- 236 (646)
||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ ++|||++||++. ++.++||++++|+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~ 227 (261)
T PRK14263 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQ 227 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999964 799999999975 5788999999996
Q ss_pred ---CCeEEEEcChhhHH
Q 039035 237 ---RGQLMFQGPPKEVT 250 (646)
Q Consensus 237 ---~G~iv~~g~~~~~~ 250 (646)
+|+++..|+++++.
T Consensus 228 ~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 228 GTRTGYLVEMGPTAQIF 244 (261)
T ss_pred ccCCceEEEeCCHHHHH
Confidence 89999999988764
No 225
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=382.37 Aligned_cols=230 Identities=23% Similarity=0.341 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+.+.... ......+.+|+||||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++.
T Consensus 313 ~L~~~~l~~~y~~~~~~~-~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~--G~I~~~g~~i~ 389 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLL-NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG--GEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEEEEcCCCccc-cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC--cEEEECCEECC
Confidence 699999999996321000 000012469999999999999999999999999999999999999877 99999999874
Q ss_pred c------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 039035 91 P------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 161 (646)
. ..+++.++||+|++ .+++.+||.|++.+....+. ....++.+++++++++.+||. +..++. +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~ 463 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHE 463 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----ccc
Confidence 2 12456899999997 58999999999988654321 123445567899999999996 444544 568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+||++|+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||++++|++|++
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQI 542 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 999999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 543 v~~g~~~~i~ 552 (623)
T PRK10261 543 VEIGPRRAVF 552 (623)
T ss_pred EEecCHHHHh
Confidence 9999998874
No 226
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.1e-41 Score=386.31 Aligned_cols=215 Identities=24% Similarity=0.380 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|+++.+.+ ++.+|+|+|++++|||.+||+||||||||||+++|+|++ |.+ |+|.+||.++
T Consensus 348 ~~i~~~~vsf~~~~-----------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~--G~I~i~g~~i 413 (588)
T PRK11174 348 VTIEAEDLEILSPD-----------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ--GSLKINGIEL 413 (588)
T ss_pred ceEEEEeeEEeccC-----------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC--cEEEECCEec
Confidence 37999999976642 235999999999999999999999999999999999999 866 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~ 159 (646)
. .+.+|+.++||+|++.+|+. |++|||.++. +..++ ++++++++..++ ++..||.+|+. .
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~-G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-A 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC-C
Confidence 5 35678999999999999987 9999998852 22333 334444554443 34568888865 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCe
Confidence 5799999999999999999999999999999999999999999999886 4899999999985 346799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++..
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999888753
No 227
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4e-41 Score=385.00 Aligned_cols=218 Identities=27% Similarity=0.436 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|++. ++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.++
T Consensus 340 ~~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~--G~I~i~g~~i 407 (582)
T PRK11176 340 GDIEFRNVTFTYPGK----------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE--GEILLDGHDL 407 (582)
T ss_pred CeEEEEEEEEecCCC----------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC--ceEEECCEEh
Confidence 479999999999643 2469999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~ 159 (646)
+. ..+++.++||+|++.+|+. |++||+.++.. ...+ +++++++++..|+ ++..||.+|+. .
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~---~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFND-TIANNIAYART---EQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN-G 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC---CCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-C
Confidence 53 4578899999999999986 99999987421 1122 2345556666553 34468888865 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||+|+++|++|+||||||+||+.++.++++.|+++. +++|+|++||+++ ..+.||+|++|++|+
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~ 555 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999985 4799999999984 456799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++.+
T Consensus 556 i~e~g~~~~l~~ 567 (582)
T PRK11176 556 IVERGTHAELLA 567 (582)
T ss_pred EEEeCCHHHHHh
Confidence 999999988753
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=339.38 Aligned_cols=221 Identities=23% Similarity=0.414 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC--C---CcceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA--S---GSLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~---~~~~G~I~~~ 85 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.. | ++ |+|.++
T Consensus 3 ~l~~~~v~~~~~~------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~--G~v~~~ 68 (250)
T PRK14266 3 RIEVENLNTYFDD------------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE--GHIYLD 68 (250)
T ss_pred EEEEEeEEEEeCC------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCc--cEEEEC
Confidence 5889999998853 359999999999999999999999999999999999864 2 44 999999
Q ss_pred CeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 86 GKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 86 g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
|.++.. ...++.++|++|++.+++. |+.||+.+...... ..+.+..++++.++++.+|+.+...... +..++
T Consensus 69 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 145 (250)
T PRK14266 69 GVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG-EDDEDFIEERVEESLKAAALWDEVKDKL-DKSAL 145 (250)
T ss_pred CEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC-CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcc
Confidence 998642 2346789999999988885 99999987653321 1233445677899999999854322111 34467
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |.|||++||++. ++.+.+|++++|++|++
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEI 223 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeE
Confidence 8999999999999999999999999999999999999999999999965 899999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
++.|+++++.
T Consensus 224 ~~~g~~~~~~ 233 (250)
T PRK14266 224 IESGLTDQIF 233 (250)
T ss_pred EEeCCHHHHH
Confidence 9999988874
No 229
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.4e-41 Score=331.63 Aligned_cols=200 Identities=25% Similarity=0.326 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~~~~------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~--G~v~~~g~~~~ 66 (204)
T PRK13538 1 MLEARNLACERDE------------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA--GEVLWQGEPIR 66 (204)
T ss_pred CeEEEEEEEEECC------------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEcc
Confidence 3789999999853 358999999999999999999999999999999999999977 99999998864
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.++|++|++.+++.+||.||+.+....+ .. +.+++++++++.+||.+..++. ++.|||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 136 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH--GP---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQR 136 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc--Cc---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 2 235678999999999999999999998876432 11 2346788999999998766655 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.+..+|++++
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999999999999999999999999878999999999976 466666677766
No 230
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=374.59 Aligned_cols=216 Identities=26% Similarity=0.369 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~~~------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~I~~~g~~i~ 69 (501)
T PRK11288 4 YLSFDGIGKTFPG------------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA--GSILIDGQEMR 69 (501)
T ss_pred eEEEeeeEEEECC------------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CEEEECCEECC
Confidence 6899999999953 259999999999999999999999999999999999999977 99999999874
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
. ..+++.+|||+|++.+++.+||.||+.++....... ....+.+++++++++.+||.+..++. +.+||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHH
Confidence 2 124678999999999999999999999854211111 23445567889999999997655554 4579999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..++
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999999999999999999999999888999999999975 5788999999999999987765
Q ss_pred h
Q 039035 246 P 246 (646)
Q Consensus 246 ~ 246 (646)
.
T Consensus 224 ~ 224 (501)
T PRK11288 224 D 224 (501)
T ss_pred c
Confidence 3
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=348.51 Aligned_cols=228 Identities=24% Similarity=0.377 Sum_probs=186.5
Q ss_pred CCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-----CCcce
Q 039035 5 PVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-----SGSLK 79 (646)
Q Consensus 5 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-----~~~~~ 79 (646)
++.....|+++||++.|++ +.+|+++|+++++||+++|+|||||||||||++|+|+++ |.+
T Consensus 39 ~~~~~~~l~i~nl~~~~~~------------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~-- 104 (305)
T PRK14264 39 EFDGDAKLSVEDLDVYYGD------------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID-- 104 (305)
T ss_pred ccCCCceEEEEEEEEEeCC------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCc--
Confidence 3444457999999999853 359999999999999999999999999999999999986 345
Q ss_pred eEEEECCeeCCc-----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC----------CCC-HHHHHHHHHHHHHH
Q 039035 80 GKVTLDGKETSP-----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG----------PIS-WSDKKQRVENLVDQ 143 (646)
Q Consensus 80 G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~-~~~~~~~v~~~l~~ 143 (646)
|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....... ... .+..+++++++++.
T Consensus 105 G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (305)
T PRK14264 105 GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQ 183 (305)
T ss_pred eEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHH
Confidence 999999988642 2346789999999988874 999999987542110 011 12335678899999
Q ss_pred cCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 144 LGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 144 lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
+++.+...... +..+++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.
T Consensus 184 ~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~- 260 (305)
T PRK14264 184 AALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ- 260 (305)
T ss_pred cCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-
Confidence 98853222222 344678999999999999999999999999999999999999999999999987 489999999975
Q ss_pred HHHhhcCeE-EEEeCCeEEEEcChhhHH
Q 039035 224 RIQLLLDHL-IILARGQLMFQGPPKEVT 250 (646)
Q Consensus 224 ~i~~~~D~v-~~L~~G~iv~~g~~~~~~ 250 (646)
.+.++||++ ++|++|++++.|+++++.
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 578899996 578999999999988764
No 232
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.9e-41 Score=342.57 Aligned_cols=200 Identities=26% Similarity=0.438 Sum_probs=173.8
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
+|+|+||++++||+++|+||||||||||+++|+|+.++ + |+|.++|+++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~--G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-S--GSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-C--eEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 79999999999999999999999999999999999853 4 999999998742 23456799999998888889999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHh-------CCCEEEEeC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH-------GPPLLFLDE 187 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-------~P~lllLDE 187 (646)
||+.+.... ..+.++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|+|||
T Consensus 88 ~nl~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE 159 (248)
T PRK03695 88 QYLTLHQPD---KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE 159 (248)
T ss_pred HHHHhcCcc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence 999876321 1223344667899999999987666554 5799999999999999998 679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|+.+++
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999878999999999975 57889999999999999999987765
No 233
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-41 Score=362.11 Aligned_cols=215 Identities=29% Similarity=0.507 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++.+||++.|+++ +++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+..
T Consensus 320 ei~~~~l~~~y~~g-----------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~--G~I~vng~~l~ 386 (559)
T COG4988 320 EISLENLSFRYPDG-----------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ--GEIRVNGIDLR 386 (559)
T ss_pred eeeecceEEecCCC-----------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC--ceEEECCcccc
Confidence 55666999999764 369999999999999999999999999999999999999976 99999998764
Q ss_pred ---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCCCCCC
Q 039035 91 ---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT------TRNTHIGDEGTRG 161 (646)
Q Consensus 91 ---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~ 161 (646)
.+.++++++||+|++.+++. |++||+.++.. ..+ ++.+.+++++.||.+ -.|+.+|+ ..++
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~----~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~ 456 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP----DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAG 456 (559)
T ss_pred ccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC----cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCC
Confidence 46789999999999999998 99999987531 223 345667777776654 34677775 4578
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.+++++ +|++++||++.. ..-+|+|++|++|+++
T Consensus 457 LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~--~~~~D~I~vld~G~l~ 533 (559)
T COG4988 457 LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED--AADADRIVVLDNGRLV 533 (559)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH--HhcCCEEEEecCCcee
Confidence 9999999999999999999999999999999999999999999999875 999999999753 4569999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
+.|.++++.+
T Consensus 534 ~~g~~~~L~~ 543 (559)
T COG4988 534 EQGTHEELSE 543 (559)
T ss_pred ccCCHHHHhh
Confidence 9999998853
No 234
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-41 Score=307.68 Aligned_cols=217 Identities=27% Similarity=0.411 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|.++|+++.|+. .++|.||+++.+.||.+.++||||||||||++.|.=+..|.+ |+..+.|...+
T Consensus 2 sirv~~in~~yg~------------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s--g~l~ia~~~fd 67 (242)
T COG4161 2 SIQLNGINCFYGA------------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS--GTLNIAGNHFD 67 (242)
T ss_pred ceEEccccccccc------------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC--CeEEecccccc
Confidence 3788999999964 369999999999999999999999999999999999888887 99999887542
Q ss_pred c---------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 91 P---------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~---------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
. ..+|+.+|+|+|+-+++|.+||.|||.-+ .++..++++++.+.+..++++++.|.+.+|+. |-.
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~-----plh 141 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRY-----PLH 141 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccC-----cee
Confidence 1 24788999999999999999999999764 45555688888899999999999999888755 567
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||+|||+|||||+.+|++|++||||+.|||+-..++++++++|+..|.|-+++||... ...+.+.+++.|.+|+|+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~iv 220 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIV 220 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999965 578899999999999999
Q ss_pred EEcChhh
Q 039035 242 FQGPPKE 248 (646)
Q Consensus 242 ~~g~~~~ 248 (646)
+.|+.+.
T Consensus 221 e~g~a~~ 227 (242)
T COG4161 221 EQGDASC 227 (242)
T ss_pred eecchhh
Confidence 9998654
No 235
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=360.51 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=196.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..++++|++|+|+. .++|+||||++++||++||+|.||||||||+|+|+|.++|++ |+|.++|++.
T Consensus 7 ~ll~~~~i~K~Fgg------------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~--G~I~~~G~~~ 72 (500)
T COG1129 7 PLLELRGISKSFGG------------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS--GEILIDGKPV 72 (500)
T ss_pred ceeeeecceEEcCC------------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC--ceEEECCEEc
Confidence 37999999999964 479999999999999999999999999999999999999988 9999999987
Q ss_pred Cc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 90 SP----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL--GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 90 ~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
.. +.....|+.|+|+..+.|+|||.||+.++...+. .-+++++.+++..++|+.+|+....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 52 2345679999999999999999999998876543 237788889999999999999644777776 599
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
+||||.|.||+||..++++|+||||||.|+......+.+++++|+++|.+||++||... +++++|||+.+|+||+.+..
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999964 79999999999999999998
Q ss_pred cC
Q 039035 244 GP 245 (646)
Q Consensus 244 g~ 245 (646)
++
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 88
No 236
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-40 Score=337.83 Aligned_cols=220 Identities=25% Similarity=0.319 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~g~~ 88 (646)
.|+++||++.|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++ |+|.++|++
T Consensus 1 ~i~~~nl~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~--G~i~~~g~~ 66 (248)
T PRK09580 1 MLSIKDLHVSVED------------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 66 (248)
T ss_pred CeEEEEEEEEeCC------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCc--eEEEECCCc
Confidence 3789999999853 35999999999999999999999999999999999995 5766 999999987
Q ss_pred CCc---cc-ccccEEEEccCCCCCCCCCHHHHHHHHHH-ccC-CC---CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 039035 89 TSP---SL-IKRTSAYIMQEDRLFPMLTVFETLMFAAD-FRL-GP---ISWSDKKQRVENLVDQLGLT-TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~~-~~---~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 158 (646)
+.. .. .++.++|++|++.+++.+|+.+++.+... ++. .. ....+..+.++++++.+++. +..++.+.
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (248)
T PRK09580 67 LLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN--- 143 (248)
T ss_pred cccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC---
Confidence 642 12 23569999999998888888777654321 111 01 12223456788899999995 33443321
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh-cCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL-LDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~ 237 (646)
++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++
T Consensus 144 -~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 144 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ 221 (248)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC
Confidence 369999999999999999999999999999999999999999999999888999999999975 45565 899999999
Q ss_pred CeEEEEcChhhH
Q 039035 238 GQLMFQGPPKEV 249 (646)
Q Consensus 238 G~iv~~g~~~~~ 249 (646)
|++++.|+++.+
T Consensus 222 g~i~~~g~~~~~ 233 (248)
T PRK09580 222 GRIVKSGDFTLV 233 (248)
T ss_pred CeEEEeCCHHHH
Confidence 999999988754
No 237
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=339.59 Aligned_cols=223 Identities=23% Similarity=0.356 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc---ceeEEEECC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS---LKGKVTLDG 86 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~---~~G~I~~~g 86 (646)
+.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. .+|+|.++|
T Consensus 15 ~~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 15 QKSEVNKLNFYYGG------------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred ceEEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 48999999999853 259999999999999999999999999999999999987521 349999999
Q ss_pred eeCC---c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC-HHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 87 KETS---P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS-WSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 87 ~~~~---~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
.++. . ..+++.++|++|++.+++. ||+||+.+..... ... +...+++++++++.+++.+..... -+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~ 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKDR-LGDL 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc--CCChHHHHHHHHHHHHHHcCCchhhhHH-HhCC
Confidence 7653 1 2346789999999998886 9999998865432 122 223346788888888874211111 1234
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G 236 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMG 236 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999976 699999999975 578899999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
+++..|+.+++.
T Consensus 237 ~i~~~g~~~~~~ 248 (265)
T PRK14252 237 ELIEFGATDTIF 248 (265)
T ss_pred EEEEeCCHHHHH
Confidence 999999988764
No 238
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-42 Score=323.82 Aligned_cols=221 Identities=25% Similarity=0.428 Sum_probs=198.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+++++|++++|++ +.+|+++|.++++|.+++|+|||||||||||.+++.+++.++ |+|.++|.++.
T Consensus 1 MI~i~nv~K~y~~------------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~--G~i~i~g~~~~ 66 (252)
T COG4604 1 MITIENVSKSYGT------------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS--GEITIDGLELT 66 (252)
T ss_pred CeeehhhhHhhCC------------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC--ceEEEeeeecc
Confidence 4789999999964 479999999999999999999999999999999999999988 99999999975
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ..+.++++..-|+.+....+||+|-+.|+.-.+..+...++.+..+++.++.++|++..|+.+ .+||||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQr 141 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQR 141 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhcccchh
Confidence 3 456788999999999999999999999985443333333566788999999999998887765 47999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
||.-||+.++.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||.+ ....++|+|+-|++|+++..|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCH
Confidence 9999999999999999999999999999999999999999976 999999999987 46789999999999999999999
Q ss_pred hhHHH
Q 039035 247 KEVTL 251 (646)
Q Consensus 247 ~~~~~ 251 (646)
+++..
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 99863
No 239
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=373.48 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=186.0
Q ss_pred EEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc--
Q 039035 14 FSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-- 91 (646)
Q Consensus 14 ~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-- 91 (646)
++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 ~~nl~~~~~~------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~~ 66 (491)
T PRK10982 1 MSNISKSFPG------------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS--GSILFQGKEIDFKS 66 (491)
T ss_pred CCceEEEeCC------------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc--eEEEECCEECCCCC
Confidence 3688888853 359999999999999999999999999999999999999977 999999998742
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
...++.++||+|++.+++.+||+||+.+........ .+.++..++++++++.+|+.+..++.+ .+|||||||
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 141 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQ 141 (491)
T ss_pred HHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHH
Confidence 123567999999998999999999998754211111 233444567899999999987666554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++
T Consensus 142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhh
Confidence 999999999999999999999999999999999999999888999999999975 5788999999999999999998876
Q ss_pred H
Q 039035 249 V 249 (646)
Q Consensus 249 ~ 249 (646)
.
T Consensus 221 ~ 221 (491)
T PRK10982 221 L 221 (491)
T ss_pred C
Confidence 4
No 240
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-40 Score=329.67 Aligned_cols=196 Identities=29% Similarity=0.381 Sum_probs=172.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||++.|++ +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.++..
T Consensus 1 l~i~~l~~~~~~------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (201)
T cd03231 1 LEADELTCERDG------------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA--GRVLLNGGPLDF 66 (201)
T ss_pred CEEEEEEEEeCC------------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEeccc
Confidence 578999998853 358999999999999999999999999999999999999977 999999988642
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
..+++.++|++|++.+++.+||+||+.+.... . ..++++++++.+|+.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 133 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRR 133 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHH
Confidence 34567899999999999999999999875321 1 2456889999999987666554 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++.. ....+|+++++
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999999998889999999999764 67799999887
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-40 Score=344.44 Aligned_cols=216 Identities=19% Similarity=0.302 Sum_probs=181.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||++.|+.. ...+|+|+|++|++||+++|+||||||||||+++|+|+.+ .+ |+|.++|.++
T Consensus 1 g~i~~~nls~~~~~~----------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~--G~I~i~g~~i 67 (275)
T cd03289 1 GQMTVKDLTAKYTEG----------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE--GDIQIDGVSW 67 (275)
T ss_pred CeEEEEEEEEEeCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC--cEEEECCEEh
Confidence 368999999999642 2359999999999999999999999999999999999986 44 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGD------EGTR 160 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~ 160 (646)
.. ..+++.++||+|++.+++. ||+||+.... ..+ .+++.+.++.+||.+..+...+. +...
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~-----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG-----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc-----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 42 3467889999999999985 9999996321 112 23567788889987554443321 1235
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. +++|||+++|++. .+. .||++++|++|++
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i 214 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKV 214 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeE
Confidence 699999999999999999999999999999999999999999999875 4899999999974 455 5999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|+++++..
T Consensus 215 ~~~g~~~~l~~ 225 (275)
T cd03289 215 RQYDSIQKLLN 225 (275)
T ss_pred eecCCHHHHhh
Confidence 99999999864
No 242
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.5e-40 Score=335.10 Aligned_cols=209 Identities=29% Similarity=0.422 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+++|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 7 ~i~~~~l~~~~~~------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 72 (225)
T PRK10247 7 LLQLQNVGYLAGD------------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS--GTLLFEGEDIS 72 (225)
T ss_pred eEEEeccEEeeCC------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CeEEECCEEcC
Confidence 7999999999853 359999999999999999999999999999999999998877 99999998764
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.++|++|++.+++. ||+||+.+....+. .. ..+++++++++.+|+. ...++. ++.|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~ 142 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--QQ--PDPAIFLDDLERFALPDTILTKN-----IAELSGGE 142 (225)
T ss_pred cCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC--CC--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHH
Confidence 2 2346789999999988875 99999988654321 11 1235678999999995 344444 46799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEe-CCeEEEEc
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILA-RGQLMFQG 244 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv~~g 244 (646)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++. .+ +.||++++|+ ++..+.+|
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 143 KQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhh
Confidence 99999999999999999999999999999999999999999864 899999999976 45 4699999995 45555555
Q ss_pred C
Q 039035 245 P 245 (646)
Q Consensus 245 ~ 245 (646)
.
T Consensus 221 ~ 221 (225)
T PRK10247 221 R 221 (225)
T ss_pred h
Confidence 4
No 243
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.6e-40 Score=373.76 Aligned_cols=225 Identities=22% Similarity=0.346 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++|++++|+... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|. ..+|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~~~--------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 76 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE 76 (529)
T ss_pred eEEEeceEEEecCCC--------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCE
Confidence 699999999996321 1246999999999999999999999999999999999999862 12499999999
Q ss_pred eCCcc------ccc-ccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc---cccccc
Q 039035 88 ETSPS------LIK-RTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT---RNTHIG 155 (646)
Q Consensus 88 ~~~~~------~~~-~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg 155 (646)
++... ..+ +.+|||+|++. +++.+||.|++.+...... +.+..+..++++++++.+||.+. .++.
T Consensus 77 ~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (529)
T PRK15134 77 SLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR-GMRREAARGEILNCLDRVGIRQAAKRLTDY-- 153 (529)
T ss_pred ecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHCCCCChHHHHhhC--
Confidence 86421 122 57999999974 6778899999886543211 23445566789999999999752 3444
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
+++|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .+.++||++++
T Consensus 154 ---~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~ 229 (529)
T PRK15134 154 ---PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAV 229 (529)
T ss_pred ---CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEE
Confidence 5689999999999999999999999999999999999999999999999875 899999999975 57789999999
Q ss_pred EeCCeEEEEcChhhHH
Q 039035 235 LARGQLMFQGPPKEVT 250 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~ 250 (646)
|++|++++.|+++++.
T Consensus 230 l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 230 MQNGRCVEQNRAATLF 245 (529)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
No 244
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-41 Score=357.96 Aligned_cols=217 Identities=28% Similarity=0.483 Sum_probs=186.5
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
.++.|+|+|++++|+.+ ++||+++||+|++||-+||+|+|||||||++|+|.+... .+ |+|++||+
T Consensus 348 ~~~~I~F~dV~f~y~~k-----------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~s--G~I~IdG~ 413 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPK-----------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YS--GSILIDGQ 413 (591)
T ss_pred CCCcEEEEeeEEEeCCC-----------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cC--CcEEECCe
Confidence 33489999999999753 459999999999999999999999999999999999987 44 99999999
Q ss_pred eCC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCC
Q 039035 88 ETS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDE 157 (646)
Q Consensus 88 ~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~ 157 (646)
++. .+.+|+.|||||||..||.+ ||.+|+.|+.. ..+. ++|.++.++.|+. +...|.+|++
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 874 46789999999999999987 99999998642 2333 3455556665554 4456778865
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 158 GTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
. ..|||||||||+||||++.||+|+++|||||.||+.+..++++.+++. ..|+|+|++.|+.+ ...-||+|++|++
T Consensus 485 G-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 G-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDN 560 (591)
T ss_pred c-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEEC
Confidence 4 569999999999999999999999999999999999999999999993 45899999999964 5578999999999
Q ss_pred CeEEEEcChhhHHH
Q 039035 238 GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 G~iv~~g~~~~~~~ 251 (646)
|++...|+.+++..
T Consensus 561 G~v~e~gth~ell~ 574 (591)
T KOG0057|consen 561 GTVKEYGTHSELLA 574 (591)
T ss_pred CeeEEeccHHHHhh
Confidence 99999999999875
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.3e-40 Score=373.47 Aligned_cols=219 Identities=28% Similarity=0.406 Sum_probs=186.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEEC----
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLD---- 85 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~---- 85 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+. +|++ |+|.++
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~--G~i~~~~~~~ 66 (520)
T TIGR03269 1 IEVKNLTKKFDG------------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS--GRIIYHVALC 66 (520)
T ss_pred CEEEEEEEEECC------------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc--eEEEEecccc
Confidence 578999999853 35999999999999999999999999999999999997 5766 999997
Q ss_pred -------------------CeeCC----------c---ccccccEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCHHH
Q 039035 86 -------------------GKETS----------P---SLIKRTSAYIMQE-DRLFPMLTVFETLMFAADFRLGPISWSD 132 (646)
Q Consensus 86 -------------------g~~~~----------~---~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 132 (646)
|.++. . ...++.++||+|+ +.+++.+||+||+.+..... ..+.++
T Consensus 67 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--~~~~~~ 144 (520)
T TIGR03269 67 EKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI--GYEGKE 144 (520)
T ss_pred ccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc--CCCHHH
Confidence 22210 0 1235679999997 67889999999999875432 234455
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cC
Q 039035 133 KKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SG 211 (646)
Q Consensus 133 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g 211 (646)
.+++++++++.+||++..++. +++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 567899999999998766554 457999999999999999999999999999999999999999999999976 49
Q ss_pred CEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHH
Q 039035 212 STVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 212 ~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 252 (646)
+|||++||++. .+.++||++++|++|++++.|+++++...
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999999975 57789999999999999999998877554
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.8e-40 Score=406.66 Aligned_cols=222 Identities=29% Similarity=0.478 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 928 ~L~I~nLsK~y~~~----------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts--G~I~i~G~dI~ 995 (2272)
T TIGR01257 928 GVCVKNLVKIFEPS----------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS--GTVLVGGKDIE 995 (2272)
T ss_pred eEEEEeEEEEecCC----------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc--eEEEECCEECc
Confidence 79999999999532 2469999999999999999999999999999999999999987 99999999875
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+||++|++.+++.+||+|++.|.++++ +.+.++.+++++++++.+||++.+|+.+ ++|||||||
T Consensus 996 ~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk--g~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQ 1068 (2272)
T TIGR01257 996 TNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK--GRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQR 1068 (2272)
T ss_pred chHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 3 235678999999999999999999999987654 3344556678999999999988777665 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||+||+||+.+|++|+|||||+|||+.++..+.++|++++ +|+|||++||+++ ++..++||+++|++|+++..|++++
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~ 1146 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLF 1146 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999995 5999999999975 5788999999999999999999999
Q ss_pred HHHHH
Q 039035 249 VTLHV 253 (646)
Q Consensus 249 ~~~~f 253 (646)
+...|
T Consensus 1147 Lk~~~ 1151 (2272)
T TIGR01257 1147 LKNCF 1151 (2272)
T ss_pred HHHhc
Confidence 87665
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=320.54 Aligned_cols=171 Identities=35% Similarity=0.570 Sum_probs=155.9
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (173)
T cd03230 1 IEVRNLSKRYGK------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS--GEIKVLGKDIKK 66 (173)
T ss_pred CEEEEEEEEECC------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEEccc
Confidence 478999998853 258999999999999999999999999999999999998876 999999998643
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
...++.++|++|++.+++.+|+.||+. ||||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qr 103 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQR 103 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHH
Confidence 245678999999999999999999873 99999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+++|++++|++|++
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999888999999999975 57789999999999974
No 248
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-40 Score=374.28 Aligned_cols=222 Identities=21% Similarity=0.346 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCcceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-SGSLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~g~~~ 89 (646)
.|+++||++.|+.. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++ |+|.++|+++
T Consensus 259 ~l~~~~l~~~~~~~---------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~--G~i~~~g~~~ 327 (506)
T PRK13549 259 ILEVRNLTAWDPVN---------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE--GEIFIDGKPV 327 (506)
T ss_pred eEEEecCccccccc---------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--cEEEECCEEC
Confidence 69999999988421 12359999999999999999999999999999999999998 466 9999999886
Q ss_pred Cc----ccccccEEEEccCC---CCCCCCCHHHHHHHHHHccCCC---CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 039035 90 SP----SLIKRTSAYIMQED---RLFPMLTVFETLMFAADFRLGP---ISWSDKKQRVENLVDQLGLT-TTRNTHIGDEG 158 (646)
Q Consensus 90 ~~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 158 (646)
.. ...++.++||+|++ .+++.+||.||+.+........ .+.++.+++++++++.+++. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 403 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI---- 403 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc----
Confidence 42 12356799999995 4788999999998753211111 13334456789999999996 4556554
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. ++.++||++++|++|
T Consensus 404 -~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G 481 (506)
T PRK13549 404 -ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEG 481 (506)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999988999999999975 588999999999999
Q ss_pred eEEEEcChhhH
Q 039035 239 QLMFQGPPKEV 249 (646)
Q Consensus 239 ~iv~~g~~~~~ 249 (646)
+++..|+++++
T Consensus 482 ~i~~~~~~~~~ 492 (506)
T PRK13549 482 KLKGDLINHNL 492 (506)
T ss_pred EEEEEeccccC
Confidence 99999987665
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-40 Score=380.29 Aligned_cols=215 Identities=23% Similarity=0.411 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+.+ +.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.++
T Consensus 339 ~~i~~~~v~f~y~~~-----------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~--G~I~idg~~i 405 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-----------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE--GEIRLDGRPL 405 (592)
T ss_pred CeEEEEEEEEEeCCC-----------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--ceEEECCEEh
Confidence 479999999999632 359999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
+ ...++++++||+|++.+|+. |++|||.++. ..+ +++++++++.+|+. +..||.+|+. .
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~-----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g 474 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR-----DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ-G 474 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC-C
Confidence 5 35678999999999999997 9999998853 122 24567777777755 3457888753 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ....||+|++|++|+
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQ 551 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCE
Confidence 67999999999999999999999999999999999999999999999865 699999999985 345799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
++..|+.+++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999998753
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.6e-40 Score=373.68 Aligned_cols=230 Identities=24% Similarity=0.363 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+.+.... .....++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ .+ |+|.++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~-~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~--G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGIL-KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQ--GEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCcccc-ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CC--cEEEECCEEcc
Confidence 699999999996311000 000012469999999999999999999999999999999999984 54 99999998764
Q ss_pred c---c---cccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC
Q 039035 91 P---S---LIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~---~---~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 161 (646)
. . .+++.++||+|++ .+++.+||.||+.+....+....+..+.+++++++++.+||. +..++. +++
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 425 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY-----PAE 425 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-----Ccc
Confidence 2 1 1356799999996 488899999999987543211133445567889999999996 345554 467
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 57889999999999999
Q ss_pred EEEcChhhHH
Q 039035 241 MFQGPPKEVT 250 (646)
Q Consensus 241 v~~g~~~~~~ 250 (646)
+..|+++++.
T Consensus 505 ~~~~~~~~~~ 514 (529)
T PRK15134 505 VEQGDCERVF 514 (529)
T ss_pred EEEcCHHHHh
Confidence 9999988774
No 251
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6e-41 Score=388.44 Aligned_cols=222 Identities=28% Similarity=0.505 Sum_probs=190.2
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..+.++++|++|+|+.++ +..||+|+|+.|++|+.+||+|||||||||++++|.+++.|++ |+|.+||.
T Consensus 347 ~~g~ief~nV~FsYPsRp---------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~--G~V~idG~ 415 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP---------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS--GEVLIDGE 415 (1228)
T ss_pred cccceEEEEEEecCCCCC---------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC--ceEEEcCc
Confidence 446899999999999873 4679999999999999999999999999999999999999987 99999999
Q ss_pred eCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCC
Q 039035 88 ETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQR-----VENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 88 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
++.. +.+|.+||.|.|+|.+|.. |++||+.|+. +..+.++..+. +.+.+. .|.+..||.+|+..+
T Consensus 416 di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~----~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 416 DIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK----PDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGERGV 488 (1228)
T ss_pred cchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCC----CcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCCCC
Confidence 8753 5678999999999988875 9999999863 22333332221 222222 456677899998765
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+||||||||++|||||+.+|+|||||||||+||+++...+.+.|.+.. +|+|.|+++|+.+ .+.+ +|+|+++++|+
T Consensus 489 -qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~ 564 (1228)
T KOG0055|consen 489 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGK 564 (1228)
T ss_pred -CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCE
Confidence 499999999999999999999999999999999999999999998765 5899999999976 5766 99999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|.++|+..
T Consensus 565 IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 565 IVEQGTHDELIA 576 (1228)
T ss_pred EEEecCHHHHHh
Confidence 999999999875
No 252
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.6e-40 Score=371.97 Aligned_cols=228 Identities=24% Similarity=0.367 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC-Cee-
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD-GKE- 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~-g~~- 88 (646)
.|+++||+++|++.. ..++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~~-------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~--G~i~~~~g~~~ 349 (520)
T TIGR03269 279 IIKVRNVSKRYISVD-------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS--GEVNVRVGDEW 349 (520)
T ss_pred eEEEeccEEEeccCC-------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEEecCCcc
Confidence 799999999995310 012469999999999999999999999999999999999999877 999996 542
Q ss_pred --CCc------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 89 --TSP------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 89 --~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
+.. ...++.+|||+|++.+++.+||.||+.+...+. .+.++.+++++++++.+||.+.......+..++
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE---LPDELARMKAVITLKMVGFDEEKAEEILDKYPD 426 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCCCCccchhhhhCChh
Confidence 211 123567999999999999999999998764331 233334567899999999974210001123456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 999999999975 5788999999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
++..|+++++..
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999999887643
No 253
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.4e-41 Score=381.44 Aligned_cols=219 Identities=26% Similarity=0.466 Sum_probs=187.2
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.++++|+++.|++ ++++|+|+|++++|||.+||+||||||||||+++|.|+++|.+ |+|.+||.+
T Consensus 326 ~~~I~f~~vsf~y~~-----------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~--G~I~idg~d 392 (567)
T COG1132 326 IGSIEFENVSFSYPG-----------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS--GEILIDGID 392 (567)
T ss_pred CCeEEEEEEEEEcCC-----------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC--CeEEECCEe
Confidence 357999999999974 2469999999999999999999999999999999999999976 999999998
Q ss_pred CC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCC
Q 039035 89 TS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQR-----VENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 89 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
+. ...+|+.++||+|++.+|. -||+||+.++.. ..++++..+. +++.++. +.+..||.+| +...
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~--lp~g~dt~vg-e~G~ 464 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP----DATDEEIEEALKLANAHEFIAN--LPDGYDTIVG-ERGV 464 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHh--Ccccccceec-CCCc
Confidence 75 3568999999999999999 599999998642 2344333322 2333433 3456789998 4456
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +|+|+++++|+++ .+.+ +|+|++|++|++
T Consensus 465 ~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i 541 (567)
T COG1132 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRI 541 (567)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999887 5789999999985 4555 999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|+++++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999999865
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-40 Score=333.62 Aligned_cols=209 Identities=22% Similarity=0.339 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++++.. ++.+|+|+||++++||+++|+||||||||||+++|+|..+|.+ |+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 69 (221)
T cd03244 2 DIEFKNVSLRYRPN----------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS--GSILIDGVDIS 69 (221)
T ss_pred cEEEEEEEEecCCC----------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC--CEEEECCEEhH
Confidence 58999999998642 2469999999999999999999999999999999999999877 99999998864
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN-------THIGDEGTR 160 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~ 160 (646)
. ..+++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+..+ +.. +..++
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~-----~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~ 138 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG-----EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGE 138 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCC
Confidence 2 245678999999998776 59999986431 111 234566677777654332 111 23567
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. ++. .||++++|++|++
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~ 215 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRV 215 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeE
Confidence 8999999999999999999999999999999999999999999999865 689999999975 454 4999999999999
Q ss_pred EEEcC
Q 039035 241 MFQGP 245 (646)
Q Consensus 241 v~~g~ 245 (646)
++.|+
T Consensus 216 ~~~~~ 220 (221)
T cd03244 216 VEFDS 220 (221)
T ss_pred EecCC
Confidence 98875
No 255
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-40 Score=389.28 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++|+|+.. ++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.++
T Consensus 476 ~~I~~~~vsf~y~~~----------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~--G~I~idg~~i 543 (710)
T TIGR03796 476 GYVELRNITFGYSPL----------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS--GEILFDGIPR 543 (710)
T ss_pred CeEEEEEEEEecCCC----------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEeH
Confidence 479999999999753 2469999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
. ...+|+.+|||+|++.+|+. |++|||.++. +..+. +++.++++..|+. +..||.+|+. .
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG-G 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC-C
Confidence 4 35678999999999999976 9999998642 12232 3455556665554 3457888754 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+++|++|+||||||+||+.++.++.+.|++ .++|+|++||+++. + +.||+|++|++|+
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~-i-~~~D~Iivl~~G~ 688 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST-I-RDCDEIIVLERGK 688 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH-H-HhCCEEEEEeCCE
Confidence 68999999999999999999999999999999999999999999986 48999999999753 4 5699999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++.+
T Consensus 689 i~~~G~~~~Ll~ 700 (710)
T TIGR03796 689 VVQRGTHEELWA 700 (710)
T ss_pred EEEecCHHHHHH
Confidence 999999998864
No 256
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=334.21 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=187.7
Q ss_pred CceEEEEeEEEEEeccccc----c----ccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee
Q 039035 9 TGGLGFSNLTYTVTKKKKI----E----GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG 80 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~----~----~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G 80 (646)
+..++++||+++|...+.. + .......+.+|+++|+++++||+++|+||||||||||+++|+|+++|++ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~--G 79 (264)
T PRK13546 2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV--G 79 (264)
T ss_pred CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc--e
Confidence 3578999999998763211 0 0112345679999999999999999999999999999999999999987 9
Q ss_pred EEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 81 KVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 81 ~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
+|.++|. +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..++.+ +
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM--GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K 142 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence 9999984 356778777788899999998765432 2344555567788999999987666554 5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|.+++++|+|||++||++. .+.+++|++++|++|++
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL 221 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence 79999999999999999999999999999999999999999999999878999999999965 57889999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
+..|+.+++..
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999887754
No 257
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.7e-40 Score=330.69 Aligned_cols=191 Identities=27% Similarity=0.425 Sum_probs=163.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++++|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~--G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS--GTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEchh---------hcccccCCCCCcHH
Confidence 4579999999999999999999999999999999999999977 999999986531 11123456778999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
||+.+....+ ..+.++.+++++++++.+||.+..++.+ ++||||||||++||++|+.+|+++||||||+|||+
T Consensus 103 enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 103 ENIYLNGRLL--GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9998875432 2234455567889999999987776655 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 195 TSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 195 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999877899999999975 577899999999999998765
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-40 Score=388.69 Aligned_cols=217 Identities=26% Similarity=0.431 Sum_probs=183.3
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+++||+++|++++ ++.+|+|+|++++|||.+||+||||||||||+++|+|+++|++ |+|.+||++
T Consensus 476 ~~~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~--G~I~idg~~ 544 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRP---------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG--GQVLLDGVP 544 (711)
T ss_pred CCeEEEEEEEEECCCCC---------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC--CEEEECCEE
Confidence 35799999999997531 3469999999999999999999999999999999999999987 999999998
Q ss_pred CC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 039035 89 TS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~ 158 (646)
+. ...++++++||+|++.+|+. |++|||.++.. ..+ ++++.++++..++. +..||.+|+.
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~----~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~- 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT----DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK- 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC----CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-
Confidence 74 34578899999999999986 99999987531 222 24456666666654 3457888754
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
...||||||||++|||+++++|++|+||||||+||+.+...+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G 689 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKG 689 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECC
Confidence 46799999999999999999999999999999999999999988 22 235899999999975 34679999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+.+++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998764
No 259
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=9.1e-41 Score=336.89 Aligned_cols=215 Identities=27% Similarity=0.455 Sum_probs=176.4
Q ss_pred CCCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEE
Q 039035 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVT 83 (646)
Q Consensus 4 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 83 (646)
.+.+..+.|+++|+++.|+++ .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.
T Consensus 4 ~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~ 72 (226)
T cd03248 4 APDHLKGIVKFQNVTFAYPTR---------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG--GQVL 72 (226)
T ss_pred CCCCcCceEEEEEEEEEeCCC---------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--cEEE
Confidence 456677799999999999642 12359999999999999999999999999999999999999977 9999
Q ss_pred ECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC---HHHHHHHHHHHHHHc--CCCcccccccc
Q 039035 84 LDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS---WSDKKQRVENLVDQL--GLTTTRNTHIG 155 (646)
Q Consensus 84 ~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~---~~~~~~~v~~~l~~l--gL~~~~~~~vg 155 (646)
++|+++.. ...++.++|++|++.+++ .||+||+.+..... ... ....+..++++++.+ |+.+..+..
T Consensus 73 ~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-- 147 (226)
T cd03248 73 LDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEK-- 147 (226)
T ss_pred ECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcC--
Confidence 99987642 234577999999998876 59999998753211 110 011122357788888 776554444
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++. .||++++|
T Consensus 148 ---~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l 221 (226)
T cd03248 148 ---GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVL 221 (226)
T ss_pred ---CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEe
Confidence 468999999999999999999999999999999999999999999999875 699999999976 454 59999999
Q ss_pred eCCeE
Q 039035 236 ARGQL 240 (646)
Q Consensus 236 ~~G~i 240 (646)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99874
No 260
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-40 Score=378.74 Aligned_cols=217 Identities=28% Similarity=0.499 Sum_probs=188.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|++. ++.+|+|+|++++|||.+||+||||||||||+++|+|.++|++ |+|.+||.++
T Consensus 337 ~~i~~~~v~f~y~~~----------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~--G~I~i~g~~i 404 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ--GEILLNGQPI 404 (574)
T ss_pred CeEEEEEEEEECCCC----------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEEh
Confidence 479999999999642 2359999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc------ccccccCCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT------RNTHIGDEGTR 160 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~ 160 (646)
.. ..+|+.++||+|++.+|+. |++||+.++.. .. .++++.++++..++.+. .||.+|+. ..
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~----~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~ 474 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP----NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GR 474 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC----cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-CC
Confidence 53 4678899999999999886 99999987531 12 23467788888888643 56777754 56
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. + +.+|++++|++|++
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~i 551 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQI 551 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCeE
Confidence 799999999999999999999999999999999999999999999986 48999999999863 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|+.+++.+
T Consensus 552 ~~~g~~~~l~~ 562 (574)
T PRK11160 552 IEQGTHQELLA 562 (574)
T ss_pred EEeCCHHHHHh
Confidence 99999988753
No 261
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-40 Score=327.74 Aligned_cols=199 Identities=25% Similarity=0.363 Sum_probs=170.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 67 (207)
T PRK13539 2 MLEGEDLACVRGG------------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA--GTIKLDGGDID 67 (207)
T ss_pred EEEEEeEEEEECC------------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEeCc
Confidence 5899999999853 358999999999999999999999999999999999998877 99999998764
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
....++.++|++|++.+++.+||+||+.+....+ .. ..++++++++.+||.+..++. ++.||||||||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 136 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL--GG----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRV 136 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--CC----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHH
Confidence 2225678999999998888999999998765432 11 124588999999997655554 457999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.. |+++.+..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999888999999999975 4554 88877743
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-40 Score=336.44 Aligned_cols=213 Identities=28% Similarity=0.457 Sum_probs=172.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~--G~v~~~g~~~~~ 67 (236)
T cd03253 1 IEFENVTFAYDPG-----------RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS--GSILIDGQDIRE 67 (236)
T ss_pred CEEEEEEEEeCCC-----------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CEEEECCEEhhh
Confidence 4789999988531 358999999999999999999999999999999999999877 999999987642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCCC
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-------RNTHIGDEGTRG 161 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~ 161 (646)
..+++.++|++|++.+++ .||+||+.+... ..+..+ +.+.++..++.+. .++.+ +..++.
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~ 137 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLK 137 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCc
Confidence 235677999999998886 699999987532 111111 2223333333221 11222 233568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+. .||++++|++|+++
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIV 214 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987 999999999976 454 49999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
..|+.+++.
T Consensus 215 ~~~~~~~~~ 223 (236)
T cd03253 215 ERGTHEELL 223 (236)
T ss_pred eeCCHHHHh
Confidence 999877654
No 263
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5e-40 Score=325.42 Aligned_cols=188 Identities=26% Similarity=0.404 Sum_probs=161.8
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEECCeeC
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLDGKET 89 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~g~~~ 89 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|.. +|++ |+|.++|+++
T Consensus 1 l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~--G~i~~~g~~~ 66 (200)
T cd03217 1 LEIKDLHVSVGG------------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE--GEILFKGEDI 66 (200)
T ss_pred CeEEEEEEEeCC------------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCc--cEEEECCEEC
Confidence 578999998853 25999999999999999999999999999999999994 5666 9999999987
Q ss_pred Ccc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 90 SPS---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 90 ~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
... . .++.++|++|++.+++..|+++++. . ..+.||||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~---------------------------------~-----~~~~LS~G 108 (200)
T cd03217 67 TDLPPEERARLGIFLAFQYPPEIPGVKNADFLR---------------------------------Y-----VNEGFSGG 108 (200)
T ss_pred CcCCHHHHhhCcEEEeecChhhccCccHHHHHh---------------------------------h-----ccccCCHH
Confidence 531 2 2445999999999888888887660 0 01369999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHh-hcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQL-LLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~-~~D~v~~L~~G~iv~~g 244 (646)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ ++|++++|++|++++.|
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999976 4666 79999999999999999
Q ss_pred ChhhHHHHH
Q 039035 245 PPKEVTLHV 253 (646)
Q Consensus 245 ~~~~~~~~f 253 (646)
+.+ +..++
T Consensus 188 ~~~-~~~~~ 195 (200)
T cd03217 188 DKE-LALEI 195 (200)
T ss_pred cHH-HHhhh
Confidence 544 54444
No 264
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-41 Score=358.38 Aligned_cols=216 Identities=31% Similarity=0.519 Sum_probs=189.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+|++|++++ .++|+|+|+++++||-+||+|+||||||||+++|+|-.+|++ |+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~~~~----------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~--G~i~~~g~~~~ 403 (573)
T COG4987 336 ALELRNVSFTYPGQQ----------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ--GSITLNGVEIA 403 (573)
T ss_pred eeeeccceeecCCCc----------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC--CeeeECCcChh
Confidence 699999999998753 469999999999999999999999999999999999999987 99999998864
Q ss_pred ---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCCC
Q 039035 91 ---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-------RNTHIGDEGTR 160 (646)
Q Consensus 91 ---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 160 (646)
++.+++.+++++|..++|.. |+++||.++. +..+ .+.+.++++++||++. .|+.+|+ ..+
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~ 473 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGR 473 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCC
Confidence 34578899999999999987 9999998753 2233 3456777888887643 4567765 457
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... .+.||+|++|++|++
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gki 550 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKI 550 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCee
Confidence 8999999999999999999999999999999999999999999998775 8999999999764 478999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|..+++..
T Consensus 551 ie~G~~~~Ll~ 561 (573)
T COG4987 551 IEEGTHAELLA 561 (573)
T ss_pred eecCCHHhhhc
Confidence 99999998764
No 265
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=4.2e-40 Score=325.44 Aligned_cols=195 Identities=27% Similarity=0.363 Sum_probs=167.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|.++|++ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (198)
T TIGR01189 1 LAARNLACSRGE------------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS--GEVRWNGTALAE 66 (198)
T ss_pred CEEEEEEEEECC------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--cEEEECCEEccc
Confidence 578999998853 359999999999999999999999999999999999999877 999999987642
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
..+++.++|++|++.+++.+||.||+.+....+. . + +++++++++.+||.+..++.+ +.||||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRR 135 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHH
Confidence 2345779999999989998999999988654321 1 1 346788999999987666554 5799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. + .+++++.
T Consensus 136 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 999999999999999999999999999999999999998889999999999854 2 4677654
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=371.84 Aligned_cols=214 Identities=22% Similarity=0.402 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.+. .+|+|+||++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++.
T Consensus 265 ~l~~~~l~~~~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~--G~I~~~g~~~~ 328 (510)
T PRK09700 265 VFEVRNVTSRDR--------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG--GEIRLNGKDIS 328 (510)
T ss_pred EEEEeCccccCC--------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC--CeEEECCEECC
Confidence 699999987531 38999999999999999999999999999999999999977 99999998864
Q ss_pred c----ccccccEEEEccC---CCCCCCCCHHHHHHHHHHcc---CC---C-CCHHHHHHHHHHHHHHcCCC-cccccccc
Q 039035 91 P----SLIKRTSAYIMQE---DRLFPMLTVFETLMFAADFR---LG---P-ISWSDKKQRVENLVDQLGLT-TTRNTHIG 155 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~---~~l~~~lTv~e~l~~~~~~~---~~---~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 155 (646)
. ...++.+|||+|+ ..+++.+||+||+.+....+ .. . ....+.+++++++++.+||. +..++.+
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 407 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI- 407 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-
Confidence 2 1235679999998 46889999999998753221 00 1 12233345688999999996 5666655
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
++|||||||||+||++|+.+|++|||||||+|||+.++..++++|++++++|.|||++|||+. .+.++||++++|
T Consensus 408 ----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l 482 (510)
T PRK09700 408 ----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF 482 (510)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999888999999999975 578899999999
Q ss_pred eCCeEEEEcCh
Q 039035 236 ARGQLMFQGPP 246 (646)
Q Consensus 236 ~~G~iv~~g~~ 246 (646)
++|+++..++.
T Consensus 483 ~~G~i~~~~~~ 493 (510)
T PRK09700 483 CEGRLTQILTN 493 (510)
T ss_pred ECCEEEEEecC
Confidence 99999988865
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.1e-40 Score=335.37 Aligned_cols=202 Identities=25% Similarity=0.402 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+++||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 4 ~l~~~~l~~~~~~------------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~--G~i~~~~---- 65 (251)
T PRK09544 4 LVSLENVSVSFGQ------------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE--GVIKRNG---- 65 (251)
T ss_pred EEEEeceEEEECC------------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECC----
Confidence 6899999999853 359999999999999999999999999999999999999977 9999987
Q ss_pred cccccccEEEEccCCCCCCCC--CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPML--TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+..++|++|++.+++.+ |+.+++.+. +... .+++.++++.+||.+..++. ++.|||||||
T Consensus 66 ----~~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~q 127 (251)
T PRK09544 66 ----KLRIGYVPQKLYLDTTLPLTVNRFLRLR-----PGTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQ 127 (251)
T ss_pred ----ccCEEEeccccccccccChhHHHHHhcc-----cccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHH
Confidence 24699999998877764 777776431 1111 24578899999998766655 4579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+++..|+++
T Consensus 128 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~ 205 (251)
T PRK09544 128 RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPE 205 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHH
Confidence 999999999999999999999999999999999999999876 899999999975 5788999999996 4799999887
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
++.
T Consensus 206 ~~~ 208 (251)
T PRK09544 206 VVS 208 (251)
T ss_pred HHh
Confidence 763
No 268
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.2e-39 Score=328.42 Aligned_cols=211 Identities=27% Similarity=0.394 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC--Ce-
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD--GK- 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~--g~- 87 (646)
.|+++||++.|+..++. ..++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++ |.
T Consensus 1 ml~~~~l~~~~~~~~~~-----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~~~g~~ 73 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQG-----GVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS--GRILVRHEGAW 73 (224)
T ss_pred CEEEEeeEEEeecccCC-----CcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CeEEEecCCCc
Confidence 37899999999642100 012469999999999999999999999999999999999999877 999998 42
Q ss_pred -eCCc---c---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCC
Q 039035 88 -ETSP---S---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-RNTHIGDEG 158 (646)
Q Consensus 88 -~~~~---~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~ 158 (646)
++.. . . .++.++|++|++.+++.+||+|++.+..... +...++..+++.++++.+||.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER--GVPREAARARARELLARLNIPERLWHLP----- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhhCC-----
Confidence 3321 1 1 2357999999999999999999998865432 23334455678899999999753 3433
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||+++.+.
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 468999999999999999999999999999999999999999999999987899999999995 45778999998763
No 269
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.1e-40 Score=384.67 Aligned_cols=218 Identities=29% Similarity=0.520 Sum_probs=186.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|++. ++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||.++
T Consensus 462 ~~I~~~~vsf~Y~~~----------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~--G~I~idg~~l 529 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE--GSVLLDGVDI 529 (694)
T ss_pred ceEEEEEEEEEeCCC----------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEEh
Confidence 479999999999642 2469999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
. ...+|+.++||+|++.+|+. |++|||.++. +..+. +++.++++..++. +..||.+|+. .
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----PYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGER-G 599 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----CCCCH----HHHHHHHHHcChHHHHHhCcccccceecCC-C
Confidence 5 34678999999999999986 9999998742 12232 3445555555443 4467888764 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCE
Confidence 67999999999999999999999999999999999999999999999864 799999999985 346899999999999
Q ss_pred EEEEcChhhHHHH
Q 039035 240 LMFQGPPKEVTLH 252 (646)
Q Consensus 240 iv~~g~~~~~~~~ 252 (646)
+++.|+.+++.+.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999988653
No 270
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.7e-40 Score=319.70 Aligned_cols=172 Identities=26% Similarity=0.444 Sum_probs=155.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++| +|+++|+++++||+++|+||||||||||+++|+|.++|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~~----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~ 65 (182)
T cd03215 4 VLEVRGLSVKG----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS--GEITLDGKPVT 65 (182)
T ss_pred EEEEeccEEEe----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEECC
Confidence 58899998764 6999999999999999999999999999999999999977 99999998875
Q ss_pred c----ccccccEEEEccCC---CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 P----SLIKRTSAYIMQED---RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. ...++.++|++|+. .+++.+|++||+.+... ||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS 106 (182)
T cd03215 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LS 106 (182)
T ss_pred ccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cC
Confidence 3 13467899999984 57888999999976321 99
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999877999999999975 58889999999999974
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-40 Score=318.97 Aligned_cols=172 Identities=33% Similarity=0.571 Sum_probs=155.7
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +.+++|+|+++++||+++|+||||||||||+++|+|.++|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~~ 66 (178)
T cd03229 1 LELKNVSKRYGQ------------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS--GSILIDGEDLTD 66 (178)
T ss_pred CEEEEEEEEECC------------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEEccc
Confidence 478999998853 359999999999999999999999999999999999999876 999999988642
Q ss_pred -----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 92 -----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 92 -----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
...++.++|++|++.+++.+|++||+.+. |||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~ 105 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQ 105 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHH
Confidence 23567899999999999899999987541 99999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++|+
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999887 899999999975 5777999999999885
No 272
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.1e-40 Score=384.49 Aligned_cols=216 Identities=25% Similarity=0.433 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|+.. +.+|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|++||.++
T Consensus 472 ~~I~~~~vsf~y~~~-----------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~--G~I~idg~~i 538 (708)
T TIGR01193 472 GDIVINDVSYSYGYG-----------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSL 538 (708)
T ss_pred CcEEEEEEEEEcCCC-----------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC--cEEEECCEEH
Confidence 479999999999632 369999999999999999999999999999999999999987 9999999986
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
. ...+|+.+|||+|++.+|+. |++|||.++.+ +..+. +++.++++..|+. ...||.+|+. .
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~-G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE-G 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC-C
Confidence 4 35678999999999999987 99999987531 12232 3345555555543 3457888754 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++||||++++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ..+.+|+|++|++|+
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999985 4899999999985 346899999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++.+
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
No 273
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6e-40 Score=337.43 Aligned_cols=220 Identities=20% Similarity=0.292 Sum_probs=176.2
Q ss_pred CCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC
Q 039035 6 VDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD 85 (646)
Q Consensus 6 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 85 (646)
+...+.|+++|++++|++. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|.+ |+|.++
T Consensus 14 ~~~~~~i~~~~l~~~~~~~----------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~i~ 81 (257)
T cd03288 14 VGLGGEIKIHDLCVRYENN----------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD--GKIVID 81 (257)
T ss_pred ccCCceEEEEEEEEEeCCC----------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC--CeEEEC
Confidence 3445589999999999642 2369999999999999999999999999999999999998877 999999
Q ss_pred CeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccc
Q 039035 86 GKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-------NTHIG 155 (646)
Q Consensus 86 g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg 155 (646)
|+++.. ..+++.++|++|++.+++. |++||+.... .... +.+.++++..++.+.. ++.+
T Consensus 82 g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~-----~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~- 150 (257)
T cd03288 82 GIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC-----KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVV- 150 (257)
T ss_pred CEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC-----CCCH----HHHHHHHHHhCcHHHHhhcccccCcEe-
Confidence 998742 2456789999999988874 9999985321 0111 1223333333332211 1222
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.++++. ++.|||++||++.. +.. ||++++|
T Consensus 151 ~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dri~~l 227 (257)
T cd03288 151 TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADLVLVL 227 (257)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCEEEEE
Confidence 23457899999999999999999999999999999999999999999999875 48999999999864 554 9999999
Q ss_pred eCCeEEEEcChhhHHH
Q 039035 236 ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 236 ~~G~iv~~g~~~~~~~ 251 (646)
++|+++..|+++++..
T Consensus 228 ~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 228 SRGILVECDTPENLLA 243 (257)
T ss_pred ECCEEEEeCCHHHHHh
Confidence 9999999999887653
No 274
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.1e-40 Score=367.94 Aligned_cols=221 Identities=22% Similarity=0.346 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CcceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS-GSLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~G~I~~~g~~~ 89 (646)
.|+++|++++|..+ +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+ |+|.++|+++
T Consensus 257 ~l~~~~l~~~~~~~---------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~--G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVIN---------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE--GNVFINGKPV 325 (500)
T ss_pred eEEEeCCccccccc---------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC--eEEEECCEEC
Confidence 69999999877321 123599999999999999999999999999999999999985 56 9999999887
Q ss_pred Cc----ccccccEEEEccCC---CCCCCCCHHHHHHHHHH--ccC-CCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 039035 90 SP----SLIKRTSAYIMQED---RLFPMLTVFETLMFAAD--FRL-GPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEG 158 (646)
Q Consensus 90 ~~----~~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~--~~~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 158 (646)
.. ...++.+|||+|+. .+++.+||+||+.+... ... ......+.+++++++++.++|.+ ..++.+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 401 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI---- 401 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc----
Confidence 42 23456799999995 58899999999987532 110 11223444567899999999963 455554
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|
T Consensus 402 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 402 -GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEG 479 (500)
T ss_pred -ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999988999999999975 588899999999999
Q ss_pred eEEEEcChhh
Q 039035 239 QLMFQGPPKE 248 (646)
Q Consensus 239 ~iv~~g~~~~ 248 (646)
+++..++.++
T Consensus 480 ~i~~~~~~~~ 489 (500)
T TIGR02633 480 KLKGDFVNHA 489 (500)
T ss_pred EEEEEEcccc
Confidence 9998776543
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-39 Score=323.56 Aligned_cols=200 Identities=23% Similarity=0.344 Sum_probs=167.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|+.. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++
T Consensus 5 ~~l~~~~l~~~~~~~----------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~--G~i~~~g~~~ 72 (207)
T cd03369 5 GEIEVENLSVRYAPD----------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE--GKIEIDGIDI 72 (207)
T ss_pred CeEEEEEEEEEeCCC----------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CeEEECCEEh
Confidence 479999999998642 1359999999999999999999999999999999999999877 9999999986
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
.. ...++.++|++|++.+++. ||+||+.+.. .... +.+.+.++ + +..++.|||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~-----~~~~----~~~~~~l~---~---------~~~~~~LS~G~ 130 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD-----EYSD----EEIYGALR---V---------SEGGLNLSQGQ 130 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC-----CCCH----HHHHHHhh---c---------cCCCCcCCHHH
Confidence 42 2346789999999988874 9999996521 1121 22333333 2 22356899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +.. +|++++|++|+++..|++
T Consensus 131 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999999999985 48999999999764 554 999999999999988763
No 276
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.2e-39 Score=320.01 Aligned_cols=178 Identities=28% Similarity=0.432 Sum_probs=153.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-----ccccccEEEEccCCC-CCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-----SLIKRTSAYIMQEDR-LFP 109 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~-l~~ 109 (646)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.. ..+++.++|++|++. .+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS--GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 469999999999999999999999999999999999999877 999999998641 134567999999973 233
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPT 189 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPt 189 (646)
..||+||+.+..... ..+.++..++++++++.+||.+..++. +++||||||||++||++|+.+|++++|||||
T Consensus 83 ~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 83 AADVDQDVAFGPLNL--GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 479999999865432 234445566789999999998766655 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 190 SGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 190 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999888999999999974
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=352.20 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=178.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||++.++.+ ..+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~---------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s--GeI~I~G~~~- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG---------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK--GTVDIKGSAA- 88 (549)
T ss_pred eeEEEEEEEecCCC---------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc--eEEEECCEee-
Confidence 45555555554332 12469999999999999999999999999999999999999977 9999999642
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
++.+...+.+.+||+||+.+..... ..+.++..++++++++.++|.+..++.+ +.||||||||+
T Consensus 89 ---------~i~~~~~l~~~lTV~EnL~l~~~~~--~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRV 152 (549)
T PRK13545 89 ---------LIAISSGLNGQLTGIENIELKGLMM--GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRL 152 (549)
T ss_pred ---------eEEeccccCCCCcHHHHHHhhhhhc--CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHH
Confidence 1223445677789999998754332 2344555667889999999987766654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999888999999999975 578899999999999999999998876
Q ss_pred HHH
Q 039035 251 LHV 253 (646)
Q Consensus 251 ~~f 253 (646)
..+
T Consensus 232 ~~~ 234 (549)
T PRK13545 232 DHY 234 (549)
T ss_pred hhH
Confidence 543
No 278
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.8e-40 Score=373.74 Aligned_cols=215 Identities=25% Similarity=0.461 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+.+ +.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+|.+ |+|.+||.++
T Consensus 333 ~~I~~~~vsf~y~~~-----------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~--G~I~i~g~~i 399 (588)
T PRK13657 333 GAVEFDDVSFSYDNS-----------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS--GRILIDGTDI 399 (588)
T ss_pred CeEEEEEEEEEeCCC-----------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--CEEEECCEEh
Confidence 369999999999642 258999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
.. ..+++.++||+|++.+|+. |++||+.++. +..++ +++.++++..|+. +..||.+|+. .
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~-g 469 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----PDATD----EEMRAAAERAQAHDFIERKPDGYDTVVGER-G 469 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCC-C
Confidence 53 4678899999999999986 9999998752 22232 2344555555543 3457777754 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+.||||||||++|||+|+++|++++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGR 546 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999875 4799999999975 457899999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+.+++.
T Consensus 547 i~~~g~~~~l~ 557 (588)
T PRK13657 547 VVESGSFDELV 557 (588)
T ss_pred EEEeCCHHHHH
Confidence 99999988774
No 279
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.3e-40 Score=366.95 Aligned_cols=210 Identities=25% Similarity=0.316 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~--G~i~~~~~~~~ 68 (490)
T PRK10938 3 SLQISQGTFRLSD------------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS--GERQSQFSHIT 68 (490)
T ss_pred eEEEEeEEEEcCC------------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC--ceEEECCcccc
Confidence 5899999999953 249999999999999999999999999999999999999977 99999997653
Q ss_pred c---ccccccEEEEccCCCC--C------CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRL--F------PMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l--~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
. ...++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||++..++.+
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~----- 133 (490)
T PRK10938 69 RLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE----------VKDPARCEQLAQQFGITALLDRRF----- 133 (490)
T ss_pred cCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc----------hhHHHHHHHHHHHcCCHhhhhCCc-----
Confidence 2 2234669999998642 1 146888877531 123467889999999987666654
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+
T Consensus 134 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCT 212 (490)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 579999999999999999999999999999999999999999999999888999999999975 5789999999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+++++.
T Consensus 213 i~~~~~~~~~~ 223 (490)
T PRK10938 213 LAETGEREEIL 223 (490)
T ss_pred EEEeCCHHHHh
Confidence 99999887753
No 280
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.1e-39 Score=315.57 Aligned_cols=170 Identities=30% Similarity=0.540 Sum_probs=153.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|++++|++. ++.+++++|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~----------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~--G~i~~~g~~~~~ 68 (173)
T cd03246 1 LEVENVSFRYPGA----------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS--GRVRLDGADISQ 68 (173)
T ss_pred CEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC--CeEEECCEEccc
Confidence 4789999988642 2359999999999999999999999999999999999999977 999999988642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
..+++.++|++|++.+++. ||+||+ |||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~-tv~~~l--------------------------------------------LS~G~~q 103 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFSG-SIAENI--------------------------------------------LSGGQRQ 103 (173)
T ss_pred CCHHHHHhheEEECCCCccccC-cHHHHC--------------------------------------------cCHHHHH
Confidence 2456789999999988874 999886 8999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|++
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999878999999999975 45 58999999999974
No 281
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=333.07 Aligned_cols=233 Identities=25% Similarity=0.384 Sum_probs=206.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+.+|++..|+.+... ..+......++++||+++++||.++|+|+||||||||=.+|.+++++. |+|.++|+++
T Consensus 275 ~ll~~~~v~v~f~i~~g~-~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~---G~I~F~G~~i 350 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGF-LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ---GEIRFDGQDI 350 (534)
T ss_pred ceEEecceEEEEecCCcc-ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC---ceEEECCccc
Confidence 389999999999876322 112234467999999999999999999999999999999999998753 9999999998
Q ss_pred Cc------ccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 90 SP------SLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 90 ~~------~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
+. ..+|+.+-.|+||+ .+.|.+||.+-+..+.....+..+.+++.+++.+.|+++||+... -+++|++
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----r~RYPhE 426 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----RNRYPHE 426 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----hhcCCcc
Confidence 63 24678899999998 589999999999999888777789999999999999999997532 3567899
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.+ .|.+-++++||.. .+..+||+|++|++|+|
T Consensus 427 FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~Gki 505 (534)
T COG4172 427 FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKI 505 (534)
T ss_pred cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999985 5999999999965 68999999999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
|+.|++++++.
T Consensus 506 VE~G~~~~if~ 516 (534)
T COG4172 506 VEQGPTEAVFA 516 (534)
T ss_pred eeeCCHHHHhc
Confidence 99999999864
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1e-39 Score=317.18 Aligned_cols=176 Identities=30% Similarity=0.544 Sum_probs=155.8
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+.+ ++.+++|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 i~~~~~~~~~~~~----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~--G~i~~~g~~~~~ 68 (178)
T cd03247 1 LSINNVSFSYPEQ----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ--GEITLDGVPVSD 68 (178)
T ss_pred CEEEEEEEEeCCC----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC--CEEEECCEEHHH
Confidence 5789999998542 1359999999999999999999999999999999999999877 999999987642
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
..+++.++|++|++.+++ .|++||+ +..||||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~~i-----------------------------------------~~~LS~G~~qr 106 (178)
T cd03247 69 LEKALSSLISVLNQRPYLFD-TTLRNNL-----------------------------------------GRRFSGGERQR 106 (178)
T ss_pred HHHHHHhhEEEEccCCeeec-ccHHHhh-----------------------------------------cccCCHHHHHH
Confidence 235678999999988876 5998886 24699999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
++||++++.+|++|+|||||+|||+.++..+++.|++++ ++.|||++||++. .+ +.+|++++|++|++++.|
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999996 5899999999976 45 469999999999998764
No 283
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=344.59 Aligned_cols=215 Identities=29% Similarity=0.435 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|+. ..+++|||+++++||++||+|+||||||||+++|.|.++|++ |+|.++|+++.
T Consensus 4 ~l~~~~itK~f~~------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~--GeI~v~G~~v~ 69 (501)
T COG3845 4 ALEMRGITKRFPG------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS--GEIRVDGKEVR 69 (501)
T ss_pred eEEEeccEEEcCC------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc--ceEEECCEEec
Confidence 6899999999973 469999999999999999999999999999999999999988 99999999864
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR-LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
- +..+..||+|+|+..|.|++||.||+..+..-. ....+..+.+++++++.++.||+-..|.+++ .||-|
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG 144 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVG 144 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcc
Confidence 2 346778999999999999999999999886542 2235677888999999999999887888876 59999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||||.|-++|..+|++|||||||+-|-|...+++++.|++++++|+|||++||... ++.++|||+.+|.+|+++-..+
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999999965 6999999999999999887665
No 284
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-39 Score=371.74 Aligned_cols=217 Identities=26% Similarity=0.424 Sum_probs=186.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++||+++|+.. ++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+|.+ |+|.+||.++
T Consensus 329 ~~i~~~~v~f~y~~~----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~--G~I~i~g~~i 396 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS--GQILLDGHDL 396 (571)
T ss_pred CeEEEEEEEEEcCCC----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC--CeEEECCEeH
Confidence 479999999999643 2469999999999999999999999999999999999999987 9999999986
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
+ ...+++.++||+|++.+|+. |++|||.++.. +..+ +++++++++.+|+. +..|+.+|+. .
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~---~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT---EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-G 467 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC---CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-C
Confidence 4 34578899999999999887 99999987531 0122 34566667766654 3457888765 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+.||||||||++|||+++.+|++++||||||+||+.++..+++.|++++ +++|+|++||+++ ..+.||+|++|++|+
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~ 544 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGR 544 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCE
Confidence 5799999999999999999999999999999999999999999999885 4799999999974 467899999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+.+++.
T Consensus 545 i~~~g~~~~l~ 555 (571)
T TIGR02203 545 IVERGTHNELL 555 (571)
T ss_pred EEeeCCHHHHH
Confidence 99999998875
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.1e-39 Score=321.00 Aligned_cols=195 Identities=24% Similarity=0.334 Sum_probs=167.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++|++++|++ +++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~~~~------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~v~~~g~~~~ 66 (200)
T PRK13540 1 MLDVIELDFDYHD------------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK--GEILFERQSIK 66 (200)
T ss_pred CEEEEEEEEEeCC------------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eeEEECCCccc
Confidence 3789999999853 359999999999999999999999999999999999999977 99999998764
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ..+++.++|++|+..+++.+||+||+.+..... .. +.+++++++.+++.+..++.+ .+|||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~ 134 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKR 134 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHH
Confidence 2 345678999999998889999999998864221 11 246889999999976555554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEE
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 233 (646)
|++||++++.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. .+.+|...
T Consensus 135 rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 135 QVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 9999999999999999999999999999999999999998789999999999753 35577543
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.7e-39 Score=368.46 Aligned_cols=219 Identities=30% Similarity=0.440 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+.. ++.+|+|+|++++|||.++|+||||||||||+++|+|.++|++ |+|.+||.++
T Consensus 315 ~~i~~~~v~~~y~~~----------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~i 382 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS--GSVRLDGADL 382 (544)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEeh
Confidence 479999999999642 2468999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCCCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQ-----RVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
.. ..+++.++||+|++.+++. |++||+.+.. +..+.++..+ ..++.++.+ .+..|+.+|. ....
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~ 454 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGAT 454 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCC
Confidence 43 4567899999999999986 9999998532 1123322211 223444443 2334666664 4578
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||++|||||+++|++|+|||||+|||+.++.++.+.|+++..+|+|+|+++|+++ ..+.||++++|++|+++
T Consensus 455 LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIA 532 (544)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999767899999999985 34689999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
+.|+.+++.
T Consensus 533 ~~g~~~~l~ 541 (544)
T TIGR01842 533 RFGERDEVL 541 (544)
T ss_pred eeCCHHHHh
Confidence 999988764
No 287
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=326.50 Aligned_cols=195 Identities=29% Similarity=0.494 Sum_probs=174.3
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-------ccccccEEEEccCCCCCCCCCH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-------SLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
++++..+.-.++||.|+||||||||+|+|+|+.+|+. |.|.+||+.+.. ...+|+||||+||..|||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde--G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE--GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc--cEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5777777757999999999999999999999999988 999999986421 2347889999999999999999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLD 193 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD 193 (646)
+.||.|+.... .....+++.+.||++|..+++ |..|||||||||+|||||+++|++|+||||.+.||
T Consensus 94 rgNL~YG~~~~--------~~~~fd~iv~lLGI~hLL~R~-----P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD 160 (352)
T COG4148 94 RGNLRYGMWKS--------MRAQFDQLVALLGIEHLLDRY-----PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160 (352)
T ss_pred ecchhhhhccc--------chHhHHHHHHHhCcHHHHhhC-----CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcc
Confidence 99999986431 345678899999999877654 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHH
Q 039035 194 STSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 194 ~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~ 251 (646)
-.-+.+++-.|.+|+++ +..|+.+||.+. ++.+++|+|++|++|++...|+.+++..
T Consensus 161 ~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 161 LPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999999976 899999999965 6899999999999999999999998853
No 288
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=363.44 Aligned_cols=204 Identities=25% Similarity=0.405 Sum_probs=175.5
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----ccccccEEEEccCC---CCCCC
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP----SLIKRTSAYIMQED---RLFPM 110 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~~ 110 (646)
+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.. ...++.+|||+|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~--G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS--GYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 6999999999999999999999999999999999999977 999999988742 12456799999996 57889
Q ss_pred CCHHHHHHHHHHccC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 039035 111 LTVFETLMFAADFRL----GPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFL 185 (646)
Q Consensus 111 lTv~e~l~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllL 185 (646)
+||.||+.+...... +..+.++.+++++++++.+||. +..++.+ +.|||||||||+||++|+.+|++|||
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999987532111 1122334456789999999995 5556554 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 186 DEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 186 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999888999999999975 68899999999999999999987765
No 289
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.7e-39 Score=376.69 Aligned_cols=217 Identities=27% Similarity=0.489 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|+.. ++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.++
T Consensus 454 ~~i~~~~vsf~y~~~----------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~--G~I~idg~~i 521 (694)
T TIGR01846 454 GAITFENIRFRYAPD----------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDL 521 (694)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCEeh
Confidence 479999999999642 2459999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
.. ..+|+.++||+|++.+++. |++||+.++. +..+. +++.++++..++. ...||.+|+. .
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g 591 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK-G 591 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC-C
Confidence 53 4678899999999999886 9999998642 12232 2344445544433 3457788754 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+++|++|+||||||+||+.++.++.+.|+++. +++|+|++||+++ .+ +.||++++|++|+
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~ 668 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQ 668 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCE
Confidence 6899999999999999999999999999999999999999999999985 5899999999985 34 5699999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++.+
T Consensus 669 i~~~g~~~~l~~ 680 (694)
T TIGR01846 669 IAESGRHEELLA 680 (694)
T ss_pred EEEeCCHHHHHH
Confidence 999999988753
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.6e-39 Score=322.79 Aligned_cols=196 Identities=27% Similarity=0.460 Sum_probs=165.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCC--CCCCHHHHHHHHH
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLF--PMLTVFETLMFAA 121 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~ 121 (646)
+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++. ..++.++|++|++.++ ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK--GTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999999977 99999998764 2456799999998764 3479999998753
Q ss_pred HccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 039035 122 DFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYS 199 (646)
Q Consensus 122 ~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~ 199 (646)
..... .....+.+++++++++.+|+++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0112234457899999999987666554 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 200 VIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 200 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
+.+.|++++++|+|||++||++. ++.++||+++++ +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999878999999999975 588899999999 89999999887763
No 291
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.2e-39 Score=367.90 Aligned_cols=217 Identities=27% Similarity=0.462 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|+.+ .++.+|+|+|++++|||.++|+||||||||||+|+|+|+++|.+ |+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~---------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~--G~I~i~g~~i 404 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR---------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS--GRILLDGVDL 404 (576)
T ss_pred ceEEEEEEEEECCCC---------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC--CEEEECCEEH
Confidence 469999999999742 12469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
+. ..+++.++|+||++.+|+. |++||+.++. +..+ ++++.+.++..|+. +..|+.+|+. .
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----PDAT----DEEVEAAARAAHAHEFISALPEGYDTYLGER-G 474 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----CCCC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCC-C
Confidence 53 4577889999999998886 9999998742 1222 23456666666653 2346777653 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||+++.+|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|+++.|++|+
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGR 551 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCE
Confidence 6799999999999999999999999999999999999999999999985 4899999999974 346799999999999
Q ss_pred EEEEcChhhHH
Q 039035 240 LMFQGPPKEVT 250 (646)
Q Consensus 240 iv~~g~~~~~~ 250 (646)
++..|+.+++.
T Consensus 552 ~~~~g~~~~l~ 562 (576)
T TIGR02204 552 IVAQGTHAELI 562 (576)
T ss_pred EEeeecHHHHH
Confidence 99999988764
No 292
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=361.27 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=175.5
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----ccccccEEEEccCC---CCCC
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP----SLIKRTSAYIMQED---RLFP 109 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~---~l~~ 109 (646)
.+++|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~--G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA--GQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC--ceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 48999999999999999999999999999999999999877 999999987642 12356799999986 4889
Q ss_pred CCCHHHHHHHHHHccC-C-C--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 039035 110 MLTVFETLMFAADFRL-G-P--ISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLF 184 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~-~-~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lll 184 (646)
.+||.||+.+...... . . ....+.+++++++++.+|+. +..++.+ ..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987532111 0 0 12233346789999999994 5666665 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 185 LDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 185 LDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
|||||+|||+.++.+++++|++++++|.|||++|||+. ++.++||++++|++|++++.|+++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999988999999999975 58899999999999999999987654
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3e-39 Score=314.58 Aligned_cols=176 Identities=35% Similarity=0.589 Sum_probs=152.8
Q ss_pred EEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-
Q 039035 13 GFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP- 91 (646)
Q Consensus 13 ~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~- 91 (646)
+++|++++|++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++..
T Consensus 1 ~~~~l~~~~~~------------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~--G~v~~~g~~~~~~ 66 (180)
T cd03214 1 EVENLSVGYGG------------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS--GEILLDGKDLASL 66 (180)
T ss_pred CeeEEEEEECC------------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECCcC
Confidence 47899998853 259999999999999999999999999999999999999877 999999988742
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
..+++.++|++| +++.+||.+..++. ++.||||||||
T Consensus 67 ~~~~~~~~i~~~~q------------------------------------~l~~~gl~~~~~~~-----~~~LS~G~~qr 105 (180)
T cd03214 67 SPKELARKIAYVPQ------------------------------------ALELLGLAHLADRP-----FNELSGGERQR 105 (180)
T ss_pred CHHHHHHHHhHHHH------------------------------------HHHHcCCHhHhcCC-----cccCCHHHHHH
Confidence 234456888887 55666776544443 45799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.+++|++++|++|++++.|
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999876 899999999975 577899999999999998654
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-39 Score=366.30 Aligned_cols=217 Identities=20% Similarity=0.362 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+.. ++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||+++
T Consensus 312 ~~I~~~~v~~~y~~~----------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~--G~i~~~g~~~ 379 (569)
T PRK10789 312 GELDVNIRQFTYPQT----------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE--GDIRFHDIPL 379 (569)
T ss_pred CcEEEEEEEEECCCC----------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CEEEECCEEH
Confidence 469999999999642 2469999999999999999999999999999999999999987 9999999986
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~ 159 (646)
.. ..+++.++||+|++.+++. |++||+.++. +..+. +++++.++..++ ++..|+.+|+. .
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----PDATQ----QEIEHVARLASVHDDILRLPQGYDTEVGER-G 449 (569)
T ss_pred hhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----CCCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCC-C
Confidence 42 4567889999999999986 9999998742 12232 234445555544 34457777754 5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||+|+++|++|+|||||++||+.++..+.+.|+++. +|+|+|++||+++. .+.+|++++|++|+
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~ 526 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGH 526 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCE
Confidence 6799999999999999999999999999999999999999999999985 58999999999853 46799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
++..|+.+++.+
T Consensus 527 i~~~g~~~~l~~ 538 (569)
T PRK10789 527 IAQRGNHDQLAQ 538 (569)
T ss_pred EEEecCHHHHHH
Confidence 999999887753
No 295
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-39 Score=376.26 Aligned_cols=222 Identities=29% Similarity=0.495 Sum_probs=192.9
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..|.|+++||+|.||.+ ++.+||+|+|+++++|+.+||+|||||||||.+.+|-..++|+. |+|.+||.
T Consensus 984 ~~G~I~~~~V~F~YPsR---------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~--G~V~IDg~ 1052 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTR---------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA--GKVKIDGV 1052 (1228)
T ss_pred ceeEEEEeeeEeeCCCC---------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC--CeEEECCc
Confidence 44689999999999976 35789999999999999999999999999999999999999987 99999999
Q ss_pred eCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCC
Q 039035 88 ETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK-----QRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 88 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
++.. ..+|+++|.|.|+|.||.. |++||+.|+.. ..+.+|.. +.+.+.+ .+|.+-.||.+|++.
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~~----~vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGerG- 1124 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGSE----EVSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGERG- 1124 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccCC----CCCHHHHHHHHHHhhhHHHH--hcCcCcccCccCccc-
Confidence 8753 5689999999999999997 99999999821 13433322 2223333 367888999999765
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++||||++.||+||||||.||+||+++..-+-+.|.+.. .|+|.|++.|+++. + +-||.|.++++|+
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST-I-qnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST-I-QNADVIAVLKNGK 1201 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-h-hcCCEEEEEECCE
Confidence 5899999999999999999999999999999999999999999999875 58999999999863 5 5799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+.+++..
T Consensus 1202 VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1202 VVEQGTHDELLA 1213 (1228)
T ss_pred EEecccHHHHHh
Confidence 999999999864
No 296
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.2e-38 Score=338.02 Aligned_cols=188 Identities=29% Similarity=0.494 Sum_probs=166.1
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHH
Q 039035 54 VMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSD 132 (646)
Q Consensus 54 I~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~ 132 (646)
|+|||||||||||++|+|+.+|++ |+|.++|+++.. ...++.++|++|++.+++.+||+||+.|+...+ ..+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~--G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS--GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR--KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc--eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc--CCCHHH
Confidence 689999999999999999999987 999999998753 224578999999999999999999999986532 234455
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C
Q 039035 133 KKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-G 211 (646)
Q Consensus 133 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g 211 (646)
.+++++++++.+||.+..++. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 567899999999998766655 4689999999999999999999999999999999999999999999999865 9
Q ss_pred CEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHH
Q 039035 212 STVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 212 ~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~ 251 (646)
+|||++||++. ++.++||++++|++|+++..|+++++..
T Consensus 152 ~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 152 ITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999975 5788999999999999999999988753
No 297
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.4e-39 Score=317.58 Aligned_cols=196 Identities=28% Similarity=0.464 Sum_probs=156.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|+.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|
T Consensus 1 l~~~~l~~~~~~~~~-------~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~--G~i~~~g----- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQ-------ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS--GSVSVPG----- 66 (204)
T ss_pred CEEeEEEEecCCCCc-------cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC--CeEEEcC-----
Confidence 578999999864200 01359999999999999999999999999999999999999977 9999998
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCCh
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-------NTHIGDEGTRGVSG 164 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSg 164 (646)
.++|++|++.+++ .|++||+.+... ... +...+.++.+++.+.. ++.+ +..+++|||
T Consensus 67 -----~i~~~~q~~~l~~-~t~~enl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~ 130 (204)
T cd03250 67 -----SIAYVSQEPWIQN-GTIRENILFGKP-----FDE----ERYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSG 130 (204)
T ss_pred -----EEEEEecCchhcc-CcHHHHhccCCC-----cCH----HHHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCH
Confidence 5999999998875 699999987432 111 1223333333332211 1222 234678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE-KVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|||||++||++|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||++||++. .+.. +|++++|++|+
T Consensus 131 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 131 GQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999999999999999999999999999998 56777667899999999975 4555 99999999985
No 298
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2e-38 Score=362.10 Aligned_cols=216 Identities=25% Similarity=0.426 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|++. +.+|+|+|+++++||.++|+||||||||||+++|+|..+|++ |+|.+||.++
T Consensus 333 ~~i~~~~v~~~y~~~-----------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~~ 399 (585)
T TIGR01192 333 GAVEFRHITFEFANS-----------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV--GQILIDGIDI 399 (585)
T ss_pred CeEEEEEEEEECCCC-----------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC--CEEEECCEEh
Confidence 369999999999642 258999999999999999999999999999999999999977 9999999986
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~ 159 (646)
.. ..+++.++||+|++.+++ .|++||+.++. +..+.++ +.+.++..++ .+..|+.+|+ ..
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~ 469 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----EGATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RG 469 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----CCCCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CC
Confidence 42 457889999999999887 49999998752 1223332 2233333332 2334666664 35
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|++||+++ .+ +.+|++++|++|+
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~ 546 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGR 546 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999885 4899999999985 34 5699999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
++..|+.+++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999887753
No 299
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.9e-39 Score=395.41 Aligned_cols=220 Identities=24% Similarity=0.414 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-------------
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG------------- 76 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~------------- 76 (646)
+.|+++||+|+|+.++ ++++|+|+||+++||+.+||+||||||||||+++|.|+++|.
T Consensus 1164 g~I~f~nVsF~Y~~~~---------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRP---------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred ceEEEEEEEEECCCCC---------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 5799999999997531 246999999999999999999999999999999999999872
Q ss_pred ---------------------------------------cceeEEEECCeeCC---cccccccEEEEccCCCCCCCCCHH
Q 039035 77 ---------------------------------------SLKGKVTLDGKETS---PSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 77 ---------------------------------------~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
..+|+|++||.++. ...+|+.+|||+|++.+|+. |++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHH
Confidence 02599999999874 35688999999999999975 999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLG-------LTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDE 187 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDE 187 (646)
|||.|+. +..+.+ .++++++..+ |.+..||.+|+. ...||||||||++|||||+.+|+||||||
T Consensus 1314 eNI~~g~----~~at~e----eI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1314 ENIKFGK----EDATRE----DVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred HHHhcCC----CCCCHH----HHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999863 123333 3444455443 455678999854 46799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEEeC----CeEE-EEcChhhHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIILAR----GQLM-FQGPPKEVT 250 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~g~~~~~~ 250 (646)
|||+||+.+...|.+.|.++. .+++|+|+++|+++. .+.||+|++|++ |+++ +.|+.+++.
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999987 368999999999753 467999999999 9955 899998875
No 300
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-38 Score=304.53 Aligned_cols=231 Identities=26% Similarity=0.387 Sum_probs=201.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++++..+ +.||++||++|++||+.+||||||||||||.++|+|.-...-++|+|.++|+++.
T Consensus 3 ~L~I~dLhv~v~~~-----------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 3 MLEIKDLHVEVEGK-----------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eeEEeeeEEEecCc-----------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 68999999998642 3799999999999999999999999999999999998654445699999999975
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCC
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 163 (646)
. +..|..+...+|.|.=+|..|+.+.|..+.+.+... . ..+..+++++.++.+++++ .+++.+. .++|
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~-~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFS 146 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI-LPEFIKELKEKAELLGLDEEFLERYVN----EGFS 146 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccc-cHHHHHHHHHHHHHcCCCHHHhhcccC----CCcC
Confidence 3 345677889999999999999999999887654321 1 2456678999999999987 5677665 4899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc--CeEEEEeCCeEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL--DHLIILARGQLM 241 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~--D~v~~L~~G~iv 241 (646)
||||||..|+..++.+|++.+||||-||||..+-..+.+.++.++++|.+++++||.. .+.++. |++.+|.+|+|+
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999999999985 466766 999999999999
Q ss_pred EEcChhhHHHHHHhcCCCC
Q 039035 242 FQGPPKEVTLHVNRLGRKV 260 (646)
Q Consensus 242 ~~g~~~~~~~~f~~~g~~~ 260 (646)
..|.+ ++..++++-||.|
T Consensus 225 ~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 225 KSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred ecCCH-HHHHHHHHhchHH
Confidence 99999 8888888888765
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.7e-38 Score=357.19 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=173.0
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc----cccccEEEEccCC---CCCCC
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS----LIKRTSAYIMQED---RLFPM 110 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~----~~~~~i~yv~Q~~---~l~~~ 110 (646)
+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~--G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG--GRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC--cEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5999999999999999999999999999999999999877 9999999987431 1345799999984 58888
Q ss_pred CCHHHHHHHHHHccCC-CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 039035 111 LTVFETLMFAADFRLG-PISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP 188 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP 188 (646)
+|+.||+......+.. .....+.+++++++++.+||+ +..++++ +.|||||||||+||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 9999998643111111 111223346789999999996 5566654 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 189 TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 189 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
|+|||+.++..+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|.++++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999988999999999975 58899999999999999999877654
No 302
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.5e-39 Score=339.27 Aligned_cols=229 Identities=30% Similarity=0.441 Sum_probs=196.7
Q ss_pred CCCCCCCc-eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeE
Q 039035 3 GKPVDFTG-GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGK 81 (646)
Q Consensus 3 ~~~~~~~~-~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 81 (646)
.++.+.|. .|.++++++.-++ .++.+|+++||.+++||.++|+||||||||||.|+|.|..+|.+ |.
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~PPg----------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~--G~ 392 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAPPG----------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS--GS 392 (580)
T ss_pred CCCCCCCCceeeEeeeeecCCC----------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC--Cc
Confidence 45666665 9999999984332 35789999999999999999999999999999999999999987 99
Q ss_pred EEECCeeCC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHH-----HHHHHHHHHHHHcCCCcccccc
Q 039035 82 VTLDGKETS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWS-----DKKQRVENLVDQLGLTTTRNTH 153 (646)
Q Consensus 82 I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~ 153 (646)
|++||.+++ .+.+-++|||.||+-.||+. ||.||+.= +.- ..+.+ .+.+.|++++- .+.+-.||.
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f~~-~~d~~kIieAA~lAgvHelIl--~lP~GYdT~ 465 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIAR---FGE-EADPEKVIEAARLAGVHELIL--RLPQGYDTR 465 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHh---ccc-cCCHHHHHHHHHHcChHHHHH--hCcCCccCc
Confidence 999998864 45678999999999999998 99999952 211 12222 22344666654 567788999
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEE
Q 039035 154 IGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 154 vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 233 (646)
+|+.. ..||||||||+++||||..+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|+
T Consensus 466 iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkil 542 (580)
T COG4618 466 IGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKIL 542 (580)
T ss_pred cCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceee
Confidence 99754 689999999999999999999999999999999999999999999999999999999999986 567899999
Q ss_pred EEeCCeEEEEcChhhHHHHH
Q 039035 234 ILARGQLMFQGPPKEVTLHV 253 (646)
Q Consensus 234 ~L~~G~iv~~g~~~~~~~~f 253 (646)
+|++|++-.+|+.+|+....
T Consensus 543 vl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 543 VLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred eecCChHHhcCCHHHHHHHh
Confidence 99999999999999998764
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=306.88 Aligned_cols=168 Identities=33% Similarity=0.582 Sum_probs=149.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++ +..+++|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~--G~i~~~g~~~~~ 68 (171)
T cd03228 1 IEFKNVSFSYPGR----------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS--GEILIDGVDLRD 68 (171)
T ss_pred CEEEEEEEEcCCC----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC--CEEEECCEEhhh
Confidence 4789999988642 1359999999999999999999999999999999999999876 999999988642
Q ss_pred ---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 92 ---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 92 ---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
..+++.++|++|++.+++ .|+.||+ |||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~ 103 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQ 103 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHH
Confidence 234677999999988776 5888876 9999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.. ||++++|++|+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999964 799999999976 4666 99999999885
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.3e-38 Score=316.57 Aligned_cols=201 Identities=26% Similarity=0.397 Sum_probs=162.0
Q ss_pred EEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-
Q 039035 13 GFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP- 91 (646)
Q Consensus 13 ~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~- 91 (646)
.+.|+++.++.. +.+++|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++..
T Consensus 2 ~~~~~~~~~~~~-----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~--G~i~~~g~~~~~~ 68 (218)
T cd03290 2 QVTNGYFSWGSG-----------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE--GKVHWSNKNESEP 68 (218)
T ss_pred eeeeeEEecCCC-----------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC--CeEEECCcccccc
Confidence 567888887632 469999999999999999999999999999999999998877 999999987632
Q ss_pred ------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCC
Q 039035 92 ------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRN-------THIGDEG 158 (646)
Q Consensus 92 ------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~ 158 (646)
...++.++|++|++.++ ..|++||+.+... ... ++..++++.+++.+..+ +.. +..
T Consensus 69 ~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 137 (218)
T cd03290 69 SFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP-----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GER 137 (218)
T ss_pred cccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc-----CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccC
Confidence 12346799999999887 5799999987431 111 22345566666643221 111 234
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE--KVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+..|||||||||+||++|+.+|++|||||||+|||+.++..+++ +++.+.++|.|||++||++.. + ..+|++++|+
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~ 215 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMK 215 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEec
Confidence 67899999999999999999999999999999999999999998 677776678999999999864 5 4699999999
Q ss_pred CCe
Q 039035 237 RGQ 239 (646)
Q Consensus 237 ~G~ 239 (646)
+|+
T Consensus 216 ~G~ 218 (218)
T cd03290 216 DGS 218 (218)
T ss_pred CCC
Confidence 884
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.3e-38 Score=301.50 Aligned_cols=158 Identities=29% Similarity=0.446 Sum_probs=144.1
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|++ +++++++|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~--G~v~~~g~~~~~ 66 (163)
T cd03216 1 LELRGITKRFGG------------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS--GEILVDGKEVSF 66 (163)
T ss_pred CEEEEEEEEECC------------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEECCc
Confidence 578999999953 259999999999999999999999999999999999999977 999999988753
Q ss_pred ----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 92 ----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 92 ----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
...++.++|++| ||||||
T Consensus 67 ~~~~~~~~~~i~~~~q----------------------------------------------------------LS~G~~ 88 (163)
T cd03216 67 ASPRDARRAGIAMVYQ----------------------------------------------------------LSVGER 88 (163)
T ss_pred CCHHHHHhcCeEEEEe----------------------------------------------------------cCHHHH
Confidence 124567899988 999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.+|++++|++|++++
T Consensus 89 qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999878999999999965 5778999999999999875
No 306
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.4e-39 Score=315.15 Aligned_cols=234 Identities=28% Similarity=0.399 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEecccc--cc-----cccc--ccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeE
Q 039035 11 GLGFSNLTYTVTKKKK--IE-----GTWL--KEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGK 81 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~--~~-----~~~~--~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 81 (646)
.+..+||++.|....+ .- ..++ +....+++||||+|++|++++.+|||||||||+||+|+|++.|++ |+
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~--G~ 80 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS--GK 80 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC--Ce
Confidence 5788999887754221 10 1122 223568999999999999999999999999999999999999988 99
Q ss_pred EEECCeeCC--cccccccEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 82 VTLDGKETS--PSLIKRTSAYIM-QEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 82 I~~~g~~~~--~~~~~~~i~yv~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
|.++|.+.- .+.+-+.+++|+ |...+...+.+.|.+.....++ .++.++-+++.+.+.+.|+|++..+.++
T Consensus 81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy--~Ipd~~F~~r~~~l~eiLdl~~~lk~~v---- 154 (325)
T COG4586 81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY--EIPDDEFAERLDFLTEILDLEGFLKWPV---- 154 (325)
T ss_pred EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH--hCCHHHHHHHHHHHHHHhcchhhhhhhh----
Confidence 999998653 234456677775 5556777777888887765543 4677888899999999999998777665
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|.||-|||.|+.||.+|+++|+||||||||-|||..++..+.+.|++..+ ++.||+.+||+.+ .+..+||||++++.
T Consensus 155 -r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~ 232 (325)
T COG4586 155 -RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ 232 (325)
T ss_pred -hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC
Confidence 68999999999999999999999999999999999999999999999985 5999999999976 58999999999999
Q ss_pred CeEEEEcChhhHHHHHH
Q 039035 238 GQLMFQGPPKEVTLHVN 254 (646)
Q Consensus 238 G~iv~~g~~~~~~~~f~ 254 (646)
|+++|+|+.+++...|.
T Consensus 233 Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 233 GQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcEeecccHHHHHHHhC
Confidence 99999999999877653
No 307
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.4e-38 Score=309.11 Aligned_cols=193 Identities=24% Similarity=0.290 Sum_probs=162.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|++ +.+++ +|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~------------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~g~~i~ 65 (195)
T PRK13541 1 MLSLHQLQFNIEQ------------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS--GNIYYKNCNIN 65 (195)
T ss_pred CeEEEEeeEEECC------------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCcccC
Confidence 3789999999853 23555 999999999999999999999999999999999977 99999998875
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
... ++.++|++|+..+++.+||+||+.+....+ . ..++++++++.+++.+..++.+ +.||||||||+
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl 132 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY--N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIV 132 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc--c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHH
Confidence 322 456899999988888899999998865322 1 2346788899999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEE
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 233 (646)
+||++++.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|++.. + +.+|-+.
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~~ 193 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQILQ 193 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhheec
Confidence 99999999999999999999999999999999998877789999999999763 4 3466543
No 308
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=357.74 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++++|+..+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 4 ~l~~~nl~~~y~~~~--------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~--G~i~~~g~~i~ 73 (648)
T PRK10535 4 LLELKDIRRSYPSGE--------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS--GTYRVAGQDVA 73 (648)
T ss_pred EEEEeeEEEEeCCCC--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEEcC
Confidence 699999999996421 12469999999999999999999999999999999999999977 99999999875
Q ss_pred c---cc----ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 P---SL----IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~---~~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. .. .++.++|++|+..+++.+|+.||+.+..... +...++.++++.++++.+||.+..|+.. +.||
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS 146 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLS 146 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCC
Confidence 3 11 2467999999999999999999999865322 2344566678899999999987666554 5799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||+||++|||+|+.+|++|+|||||+|||+.++..+.++|++++++|+|+|++||++. .+ +.||++++|++|++++.
T Consensus 147 ~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999999878999999999975 34 57999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|++++..
T Consensus 225 g~~~~~~ 231 (648)
T PRK10535 225 PPAQEKV 231 (648)
T ss_pred cCccccc
Confidence 9998775
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-39 Score=295.27 Aligned_cols=194 Identities=28% Similarity=0.437 Sum_probs=171.6
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC---cccccccEEEEccCCCCCCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS---PSLIKRTSAYIMQEDRLFPML 111 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~---~~~~~~~i~yv~Q~~~l~~~l 111 (646)
+..||+|+|+.+++||..+|.||||||||||+|+++.++.|++ |++++.|++++ ++.+|+.++|+.|.+.||+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~--G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS--GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC--ceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 4579999999999999999999999999999999999999988 99999999975 46789999999999999998
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 039035 112 TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSG 191 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsg 191 (646)
||++|+.|..++|..+. .++...++++++++.+.. .+..+..||||||||++|+|.|..-|+||+||||||.
T Consensus 92 tVeDNlifP~~~r~rr~----dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 92 TVEDNLIFPWQIRNRRP----DRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred chhhccccchHHhccCC----ChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 99999999887764332 245678899999997542 2333457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 192 LDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 192 LD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||+.++..|-++|.++. .+.+.++.+||++.. ..+.+|+++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 99999999999999987 578999999999864 5578999999999875
No 310
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.7e-38 Score=357.66 Aligned_cols=188 Identities=31% Similarity=0.520 Sum_probs=161.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++||+|+|+++ +.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.++
T Consensus 333 ~~I~~~~vsf~Y~~~-----------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~--G~I~i~g~~i 399 (529)
T TIGR02868 333 PTLELRDLSFGYPGS-----------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ--GEVTLDGVSV 399 (529)
T ss_pred ceEEEEEEEEecCCC-----------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEEh
Confidence 479999999999642 249999999999999999999999999999999999999987 9999999886
Q ss_pred C--cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCC
Q 039035 90 S--PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGTR 160 (646)
Q Consensus 90 ~--~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 160 (646)
. ...+|+.++||+|++.+|+. |++|||.++. +..+ +++++++++..+++ +..||.+|+.. .
T Consensus 400 ~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G-~ 469 (529)
T TIGR02868 400 SSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----PDAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGG-A 469 (529)
T ss_pred hhHHHHHHhheEEEccCcccccc-cHHHHHhccC----CCCC----HHHHHHHHHHcCCHHHHHhCcccccchhcccc-C
Confidence 5 35678899999999999987 9999998852 1222 23456666666554 44688998644 5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQP 221 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 221 (646)
.||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 799999999999999999999999999999999999999999999864 479999999984
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-37 Score=298.97 Aligned_cols=164 Identities=30% Similarity=0.433 Sum_probs=145.0
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++|++++|+++ +.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 1 i~~~~~~~~~~~~-----------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--G~i~~~~~---- 63 (166)
T cd03223 1 IELENLSLATPDG-----------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS--GRIGMPEG---- 63 (166)
T ss_pred CEEEEEEEEcCCC-----------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECCC----
Confidence 4789999988532 359999999999999999999999999999999999999877 99999873
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
+.++|++|++.++ ..||+||+.+. .+++||||||||++
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~ 101 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP-------------------------------------WDDVLSGGEQQRLA 101 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc-------------------------------------CCCCCCHHHHHHHH
Confidence 5799999998765 57999998642 12479999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
||++|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. . .+.||++++|++|.
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~ 164 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence 999999999999999999999999999999999986 689999999975 3 46999999998753
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.3e-37 Score=320.09 Aligned_cols=200 Identities=28% Similarity=0.435 Sum_probs=163.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++. . +.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|
T Consensus 39 ~l~i~nls~~--~------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~--G~I~i~g---- 98 (282)
T cd03291 39 NLFFSNLCLV--G------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE--GKIKHSG---- 98 (282)
T ss_pred eEEEEEEEEe--c------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECC----
Confidence 7999999984 1 259999999999999999999999999999999999999977 9999988
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCCC
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-------NTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 163 (646)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++ ..+..||
T Consensus 99 ------~i~yv~q~~~l~~~-tv~enl~~~~~~-----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LS 161 (282)
T cd03291 99 ------RISFSSQFSWIMPG-TIKENIIFGVSY-----DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLS 161 (282)
T ss_pred ------EEEEEeCccccccc-CHHHHhhccccc-----CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCC
Confidence 38999999988875 999999864211 11 1223334444443221 22222 2456899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV-HNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||++||++|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYF 238 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999865 5554 57999999999764 4 5799999999999999
Q ss_pred EcChhhHH
Q 039035 243 QGPPKEVT 250 (646)
Q Consensus 243 ~g~~~~~~ 250 (646)
.|+++++.
T Consensus 239 ~g~~~~~~ 246 (282)
T cd03291 239 YGTFSELQ 246 (282)
T ss_pred ECCHHHHH
Confidence 99988764
No 313
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-38 Score=308.48 Aligned_cols=215 Identities=26% Similarity=0.408 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|++.++++ +.||+|+|++|+|||-.+|+|||||||||||++++|..+|++ |.+.+.|+...
T Consensus 31 li~l~~v~v~r~g------------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss--g~~~~~G~~~G 96 (257)
T COG1119 31 LIELKNVSVRRNG------------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS--GDVTLLGRRFG 96 (257)
T ss_pred eEEecceEEEECC------------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC--Cceeeeeeecc
Confidence 6999999999865 479999999999999999999999999999999999999986 99999999874
Q ss_pred c----ccccccEEEEccC--CCCCCCCCHHHHHHHHH--HccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 91 P----SLIKRTSAYIMQE--DRLFPMLTVFETLMFAA--DFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~--~~l~~~lTv~e~l~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
. .++|++||+|.-. ..+.+..+|+|-+.-+. ...... ...++..+++..+++.+|+.+.+|+..+ .
T Consensus 97 ~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~ 171 (257)
T COG1119 97 KGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----S 171 (257)
T ss_pred CCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----h
Confidence 3 4578999999743 34566778888875332 222222 2345667889999999999998888876 6
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS--GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
||-||||||.|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|++||++. ++-..++++++|++|+
T Consensus 172 LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~ 250 (257)
T COG1119 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250 (257)
T ss_pred cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999865 899999999975 6889999999999999
Q ss_pred EEEEcC
Q 039035 240 LMFQGP 245 (646)
Q Consensus 240 iv~~g~ 245 (646)
++++|.
T Consensus 251 v~~~g~ 256 (257)
T COG1119 251 VVAQGK 256 (257)
T ss_pred eeeccc
Confidence 999874
No 314
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.4e-38 Score=387.50 Aligned_cols=217 Identities=18% Similarity=0.272 Sum_probs=185.7
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+++||+++|+.. .+.+|+|+|++|+|||.+||+||||||||||+++|.|+++|++ |+|.+||.+
T Consensus 1232 ~g~I~f~nVsf~Y~~~----------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~--G~I~IdG~d 1299 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPG----------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK--GRIMIDDCD 1299 (1495)
T ss_pred CCcEEEEEEEEEECCC----------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC--ceEEECCEE
Confidence 3579999999999532 2469999999999999999999999999999999999999987 999999998
Q ss_pred CC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 039035 89 TS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~ 158 (646)
+. ...+|++++||||++.+|+. |++|||.+.. ..++ +++.++++..++. +..|+.+|+.
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~-----~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS-----EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 75 35688999999999999987 9999997531 1222 3455666666553 3457888753
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. -||+|++|++|
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i~-~~DrIlVL~~G 1445 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-II-DCDKILVLSSG 1445 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-HH-hCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999875 47999999999853 54 59999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++.+
T Consensus 1446 ~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1446 QVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999863
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=350.11 Aligned_cols=211 Identities=24% Similarity=0.354 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|++ +++|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|.
T Consensus 1 ml~i~~ls~~~~~------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~--G~i~~~~~--- 63 (530)
T PRK15064 1 MLSTANITMQFGA------------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA--GNVSLDPN--- 63 (530)
T ss_pred CEEEEEEEEEeCC------------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEecCC---
Confidence 3789999999953 359999999999999999999999999999999999999977 99999873
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHH-cc-----------CCCC------------------CHHHHHHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD-FR-----------LGPI------------------SWSDKKQRVENL 140 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~-----------~~~~------------------~~~~~~~~v~~~ 140 (646)
+.+||++|++.+++.+||+|++.++.. .+ .+.. ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 358999999999999999999987521 00 0000 001234678899
Q ss_pred HHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 039035 141 VDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ 220 (646)
Q Consensus 141 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 220 (646)
++.+||.+..+ +..+.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||+
T Consensus 139 l~~~gl~~~~~----~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 211 (530)
T PRK15064 139 LLGVGIPEEQH----YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD 211 (530)
T ss_pred HHhCCCChhHh----cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 99999975332 122457999999999999999999999999999999999999999999863 58999999999
Q ss_pred CcHHHHhhcCeEEEEeCCeE-EEEcChhhHHH
Q 039035 221 PSSRIQLLLDHLIILARGQL-MFQGPPKEVTL 251 (646)
Q Consensus 221 ~~~~i~~~~D~v~~L~~G~i-v~~g~~~~~~~ 251 (646)
+. .+.++||++++|++|++ ++.|++++...
T Consensus 212 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 212 RH-FLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 75 57889999999999999 58898877643
No 316
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.6e-38 Score=354.45 Aligned_cols=201 Identities=31% Similarity=0.499 Sum_probs=171.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+++ ++.+|+|+|++++|||.++|+||||||||||+|+|+|+.+|++ |+|.+||.++
T Consensus 319 ~~i~~~~v~f~y~~~----------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~I~~~g~~i 386 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR----------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE--GSIAVNGVPL 386 (529)
T ss_pred CeEEEEEEEEECCCC----------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEeh
Confidence 479999999999753 2369999999999999999999999999999999999999987 9999999987
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGT 159 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 159 (646)
. .+.+++.++||+|++.+|+. |++||+.++.. ..+ ++++++.++..++.+ ..||.+|+ ..
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~----~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP----DAS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC----CCC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-cc
Confidence 4 34678899999999999975 99999987531 122 234566666666543 35788875 44
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
..||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.||++++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 6799999999999999999999999999999999999999999999985 58999999999753 4679999875
No 317
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-37 Score=386.18 Aligned_cols=217 Identities=18% Similarity=0.292 Sum_probs=186.1
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.|.|+++||+++|... ...+|+|+|++|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.+
T Consensus 1235 ~g~I~f~nVsf~Y~~~----------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~--G~I~IDG~d 1302 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPE----------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER--GRILIDGCD 1302 (1622)
T ss_pred CCcEEEEEEEEEeCCC----------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC--ceEEECCEe
Confidence 3589999999999542 2369999999999999999999999999999999999999987 999999998
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~ 158 (646)
+.. ..+|+++++||||+.+|+. |++|||.++. ..+ ++++.++++..++. ...|+.+|+.
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~-----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN-----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC-----CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 753 5688999999999999987 9999997532 122 23455556655543 4567888753
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. +. -||+|++|++|
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I~-~~DrIlVLd~G 1448 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-II-DCDRILVLDAG 1448 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-HH-hCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999875 48999999999764 54 59999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999863
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-37 Score=309.83 Aligned_cols=195 Identities=25% Similarity=0.381 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||++.|+.+.. .++.....+++||||++++||+++|+|+||||||||-|+|.|+++|++ |+|.++|+++.
T Consensus 4 ll~v~~l~k~f~~~~~---~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~--G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKG---FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS--GEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccc---cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC--ceEEEcCcchh
Confidence 6899999999986532 011113579999999999999999999999999999999999999987 99999998864
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
... .++..+++.++|+.+||.. ...+++|++||||||||+
T Consensus 79 ~~~------------------------------------~~~~~~~v~elL~~Vgl~~----~~~~ryPhelSGGQrQRi 118 (268)
T COG4608 79 KLS------------------------------------KEERRERVLELLEKVGLPE----EFLYRYPHELSGGQRQRI 118 (268)
T ss_pred hcc------------------------------------hhHHHHHHHHHHHHhCCCH----HHhhcCCcccCchhhhhH
Confidence 211 2456678999999999864 233567899999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
.|||||+.+|+++++|||||.||...+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|..|++|+.|+.+++
T Consensus 119 ~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHH
Confidence 9999999999999999999999999999999999999864 999999999965 68999999999999999999999998
Q ss_pred HH
Q 039035 250 TL 251 (646)
Q Consensus 250 ~~ 251 (646)
..
T Consensus 198 ~~ 199 (268)
T COG4608 198 FS 199 (268)
T ss_pred hh
Confidence 64
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-37 Score=351.31 Aligned_cols=204 Identities=21% Similarity=0.283 Sum_probs=172.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|+++ +.+|+|+|+++++||.+||+||||||||||+++|+|.++|++ |+|.+||.++
T Consensus 321 ~~i~~~~v~f~y~~~-----------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~~ 387 (547)
T PRK10522 321 QTLELRNVTFAYQDN-----------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS--GEILLDGKPV 387 (547)
T ss_pred ceEEEEEEEEEeCCC-----------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEEC
Confidence 479999999999632 258999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCC--CCCCCCh
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDE--GTRGVSG 164 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSg 164 (646)
.. ..+++.++||+|++.+|+. |++|| . + +..++.+++.++.+++.+..+ .++. ....|||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~----~~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSg 452 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K----PANPALVEKWLERLKMAHKLE--LEDGRISNLKLSK 452 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHH-hhccc---c-----C----chHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCH
Confidence 53 3578899999999988876 78776 1 0 122356788899999875433 2221 1357999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||++|||+++.+|++|+||||||+||+.++..+.+.+.+..+ +|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999987654 5899999999974 4568999999999999866
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=347.33 Aligned_cols=215 Identities=21% Similarity=0.341 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.
T Consensus 250 ~i~~~~l~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~i~ 313 (491)
T PRK10982 250 ILEVRNLTSLR--------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA--GTITLHGKKIN 313 (491)
T ss_pred EEEEeCccccc--------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc--cEEEECCEECC
Confidence 68999998752 148999999999999999999999999999999999999977 99999998874
Q ss_pred cc----cccccEEEEccCC---CCCCCCCHHHHHHHHH-H--ccCCC-CCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 039035 91 PS----LIKRTSAYIMQED---RLFPMLTVFETLMFAA-D--FRLGP-ISWSDKKQRVENLVDQLGLT-TTRNTHIGDEG 158 (646)
Q Consensus 91 ~~----~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~-~--~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 158 (646)
.. ..++.++|++|+. .+++.+|+.+|..+.. . ..... .+..+.+++++++++.+++. +..++.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 388 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ----- 388 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc-----
Confidence 31 2356699999985 4788899887743321 0 01101 12234456788999999995 344554
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+.+|||||||||+||++++.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g 467 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNG 467 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999888999999999975 578999999999999
Q ss_pred eEEEEcChh
Q 039035 239 QLMFQGPPK 247 (646)
Q Consensus 239 ~iv~~g~~~ 247 (646)
+++..++.+
T Consensus 468 ~i~~~~~~~ 476 (491)
T PRK10982 468 LVAGIVDTK 476 (491)
T ss_pred EEEEEEccc
Confidence 999877653
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-37 Score=349.59 Aligned_cols=210 Identities=26% Similarity=0.311 Sum_probs=175.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|++ ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.+++
T Consensus 5 ~~l~i~~l~~~y~~-----------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~--G~i~~~~--- 68 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE--GEARPAP--- 68 (556)
T ss_pred EEEEEeeEEEEeCC-----------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEecC---
Confidence 47999999999952 1369999999999999999999999999999999999999977 9999975
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHH-cc------------CCCCCH---------------------HHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD-FR------------LGPISW---------------------SDKKQ 135 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~~------------~~~~~~---------------------~~~~~ 135 (646)
+..+|||+|++.+++.+||.||+.++.. .+ ...... .+..+
T Consensus 69 -----~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 69 -----GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred -----CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 2459999999999999999999987531 00 000000 01245
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 039035 136 RVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVI 215 (646)
Q Consensus 136 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 215 (646)
+++++++.+||.. .++. +++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAK-----VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEE
Confidence 6888999999953 4544 45799999999999999999999999999999999999999999999873 5999
Q ss_pred EEecCCcHHHHhhcCeEEEEeCCeEE-EEcChhhHH
Q 039035 216 LTIHQPSSRIQLLLDHLIILARGQLM-FQGPPKEVT 250 (646)
Q Consensus 216 ~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~~ 250 (646)
++||++. .+.++||++++|++|+++ +.|+.++..
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 9999975 588899999999999986 888877653
No 322
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.8e-37 Score=347.62 Aligned_cols=214 Identities=22% Similarity=0.279 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CcceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS-GSLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~G~I~~~g~~~ 89 (646)
.|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++ ++ |+|.++|+++
T Consensus 260 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~--G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYND------------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYS--NDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEECC------------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccC--CeEEEecccC
Confidence 7999999999853 2589999999999999999999999999999999998754 35 9999999865
Q ss_pred Cc----ccccccEEEEccCCCCCC--CCCHHHHHHHHHHc--cCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCC
Q 039035 90 SP----SLIKRTSAYIMQEDRLFP--MLTVFETLMFAADF--RLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTR 160 (646)
Q Consensus 90 ~~----~~~~~~i~yv~Q~~~l~~--~lTv~e~l~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 160 (646)
.. ...++.+||++|++.++. ..|+++++.+.... ........+.+++++++++.+||.+ ..++.+ +
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF-----H 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch-----h
Confidence 32 124567999999876544 35777776543211 1111111233567899999999986 566554 5
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCcHHHHh-hcCeEEEEeCC
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSG-STVILTIHQPSSRIQL-LLDHLIILARG 238 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~-~~D~v~~L~~G 238 (646)
+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ ++|++++|++|
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G 479 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDG 479 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCC
Confidence 799999999999999999999999999999999999999999999998776 57999999975 4666 58999999999
Q ss_pred eEEEEc
Q 039035 239 QLMFQG 244 (646)
Q Consensus 239 ~iv~~g 244 (646)
++++.-
T Consensus 480 ~i~~~~ 485 (490)
T PRK10938 480 DIYRYV 485 (490)
T ss_pred ceEEee
Confidence 988764
No 323
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=329.52 Aligned_cols=226 Identities=27% Similarity=0.456 Sum_probs=191.5
Q ss_pred CCCCCCc-eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE
Q 039035 4 KPVDFTG-GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV 82 (646)
Q Consensus 4 ~~~~~~~-~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I 82 (646)
.|...+. .++|+|+++.|+. ++++|+||||++.||+.+||+||||+||||+|++|.....-.+ |.|
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p-----------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s--GsI 595 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDP-----------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS--GSI 595 (790)
T ss_pred CCccccCCeEEEEEeEEecCC-----------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC--ceE
Confidence 4455554 9999999999975 4679999999999999999999999999999999999987766 999
Q ss_pred EECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHH--HHH-HHcCCCccccccccC
Q 039035 83 TLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVE--NLV-DQLGLTTTRNTHIGD 156 (646)
Q Consensus 83 ~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~~~vg~ 156 (646)
.+||+++.. ..+|+.||.||||..+|.+ |+..|+.|+. +..+.++..+.++ .+= +.+++.+..+++||.
T Consensus 596 ~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGE 670 (790)
T KOG0056|consen 596 TIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGE 670 (790)
T ss_pred EEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhh
Confidence 999999753 5689999999999999987 9999998853 2333343322211 111 236788889999998
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+.. .|||||||||+|||+++.+|.+++|||.||+||..+...|-..|.+++. |+|-|++.|..+. +. -+|.|++++
T Consensus 671 RGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-iv-nAD~ILvi~ 746 (790)
T KOG0056|consen 671 RGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-IV-NADLILVIS 746 (790)
T ss_pred ccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-ee-cccEEEEEe
Confidence 766 4999999999999999999999999999999999999999999999986 7888889999764 44 599999999
Q ss_pred CCeEEEEcChhhHHH
Q 039035 237 RGQLMFQGPPKEVTL 251 (646)
Q Consensus 237 ~G~iv~~g~~~~~~~ 251 (646)
+|+|++.|..+|+..
T Consensus 747 ~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 747 NGRIVERGRHEELLK 761 (790)
T ss_pred CCeEeecCcHHHHHh
Confidence 999999999998864
No 324
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.8e-37 Score=307.75 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=160.3
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEE-ECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVT-LDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
++|+|||+++++||+++|+||||||||||+++|+|+.+|++ |+|. ++|.... +.|+..+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s--G~i~~~~~~~~~----------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE--GDFIGLRGDALP----------LGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC--CCEEEecCceec----------cccccccCCcCcHHH
Confidence 37999999999999999999999999999999999999977 9997 7775321 234567889999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST 195 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~ 195 (646)
|+.+....+ ..+.++. .+.+.+.++|++..++.+ ++||||||||++||++|+.+|++++|||||++||+.
T Consensus 69 nl~~~~~~~--~~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLY--GLDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHc--CCCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 999876543 2222222 233445677876666655 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHHHH
Q 039035 196 SAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHVN 254 (646)
Q Consensus 196 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~f~ 254 (646)
++..+.+.+.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.++...++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 99999998865543 468999999976 5778999999999999999999998876654
No 325
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-37 Score=316.57 Aligned_cols=229 Identities=23% Similarity=0.390 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---cceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG---SLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~---~~~G~I~~~g~ 87 (646)
.|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.+.|+++.. ..+|+|.++|+
T Consensus 6 lL~v~nLsV~f~~~~--------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~ 77 (534)
T COG4172 6 LLSIRNLSVAFHQEG--------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE 77 (534)
T ss_pred ceeeeccEEEEecCC--------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh
Confidence 799999999987542 3568999999999999999999999999999999999998652 34699999999
Q ss_pred eCC---cccc---c-ccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 88 ETS---PSLI---K-RTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 88 ~~~---~~~~---~-~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++- ...+ | .+|++++|++ .|.|-.|+.+.+....++.. ++++++.++++.++|+.+|+.+..... +.+
T Consensus 78 dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr-g~~~~~Ar~r~lelL~~VgI~~p~~rl--~~y 154 (534)
T COG4172 78 DLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR-GLSRAAARARALELLELVGIPEPEKRL--DAY 154 (534)
T ss_pred hhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHcCCCchhhhh--hhC
Confidence 862 2222 2 4799999998 48888899999888776642 467788889999999999998765433 678
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|++|||||||||.||+||+++|++||.||||++||...+.+|+++|++|.++ |..++++|||.. -+.+++|||.+|.+
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~ 233 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQH 233 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEec
Confidence 9999999999999999999999999999999999999999999999999864 999999999965 68899999999999
Q ss_pred CeEEEEcChhhHHH
Q 039035 238 GQLMFQGPPKEVTL 251 (646)
Q Consensus 238 G~iv~~g~~~~~~~ 251 (646)
|++++.|.+++++.
T Consensus 234 G~ivE~~~t~~lF~ 247 (534)
T COG4172 234 GEIVETGTTETLFA 247 (534)
T ss_pred cEEeecCcHHHHhh
Confidence 99999999988763
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.3e-37 Score=349.14 Aligned_cols=211 Identities=21% Similarity=0.279 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|++++. .++.+|+|+|+++++||.++|+||||||||||+++|+|.++|++ |+|.+||.++
T Consensus 336 ~~i~~~~v~f~y~~~~~-------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~--G~i~~~g~~i 406 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE--GEILLDGAAV 406 (555)
T ss_pred ceEEEEEEEEEeCCCCC-------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEC
Confidence 47999999999975310 12359999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCCCCCCCChH
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH-IGDEGTRGVSGG 165 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-vg~~~~~~LSgG 165 (646)
.. ..+++.++||+|++.+|.. |++||.. + +..+++++++++.+++.+..+.. -|-+....||||
T Consensus 407 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgG 474 (555)
T TIGR01194 407 SADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTG 474 (555)
T ss_pred CCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHH
Confidence 53 4567889999999988876 8888731 1 12345678899999987654321 222234679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH-NIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~-~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||++|||+++.+|++|+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 475 q~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 475 QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998664 56567999999999975 4578999999999999854
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=293.52 Aligned_cols=220 Identities=24% Similarity=0.421 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC-ee
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG-KE 88 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g-~~ 88 (646)
..|+++|||+++++ ..+|+++||++.+||+-+|+|||||||||+|++|+|..+|+. |+|+++| .+
T Consensus 4 ~iL~~~~vsVsF~G------------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~--G~v~f~g~~d 69 (249)
T COG4674 4 IILYLDGVSVSFGG------------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE--GEVLFDGDTD 69 (249)
T ss_pred ceEEEeceEEEEcc------------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc--ceEEEcCchh
Confidence 47899999999964 469999999999999999999999999999999999999987 9999999 66
Q ss_pred CCc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC------CCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 89 TSP----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG------PISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
+.. .-.|..||-=+|.+..|+.+||+|||..+.+...+ .....+.+++++++|...||.+.+|..-+
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~--- 146 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA--- 146 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh---
Confidence 643 12456789999999999999999999987643211 01123456789999999999998887655
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.||.||||++.|++-++.+|++|+||||++|+-.....+..++|++++. +.+|+++.||. ..+.+++|+|.+|++|
T Consensus 147 --~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G 222 (249)
T COG4674 147 --LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEG 222 (249)
T ss_pred --hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEecc
Confidence 6999999999999999999999999999999999999999999999986 58999999996 5799999999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
.+...|+.+++.
T Consensus 223 ~VL~EGsld~v~ 234 (249)
T COG4674 223 SVLAEGSLDEVQ 234 (249)
T ss_pred ceeecccHHHhh
Confidence 999999998874
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-36 Score=310.39 Aligned_cols=179 Identities=22% Similarity=0.303 Sum_probs=153.0
Q ss_pred cccceeEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 039035 38 LLNKITGDAP-----KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 38 iL~~vs~~i~-----~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 112 (646)
.+++++++++ +||+++|+||||||||||+++|+|+.+|++ |+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~--G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE--GDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC--CeEEECCc---------eEEEecccccCCCCCC
Confidence 6677777776 799999999999999999999999999977 99999984 5899999988778899
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 039035 113 VFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGL 192 (646)
Q Consensus 113 v~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgL 192 (646)
|+|++.+...... . ....++++++.+||.+..++.+ +.|||||||||+||++|+.+|++++|||||++|
T Consensus 78 v~e~l~~~~~~~~---~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 78 VRDLLSSITKDFY---T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred HHHHHHHHhhhcc---c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 9999976432110 1 1234678999999987666554 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 193 DSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 193 D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|+.++..+.+.|+++++ .|+|||++||++. .+..+||++++|+++.
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEP 193 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCC
Confidence 99999999999999986 4899999999965 5778999999997643
No 329
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=345.59 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+
T Consensus 319 ~l~~~~l~~~~~~------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~--G~i~~~~~--- 381 (530)
T PRK15064 319 ALEVENLTKGFDN------------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS--GTVKWSEN--- 381 (530)
T ss_pred eEEEEeeEEeeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCc---
Confidence 7999999999853 358999999999999999999999999999999999999977 99999873
Q ss_pred cccccccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHH
Q 039035 91 PSLIKRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 167 (646)
+.+||++|+.. +++.+||+|++.+.. .. ...+++++++++.+|+. +..++. +.+||||||
T Consensus 382 -----~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~ 444 (530)
T PRK15064 382 -----ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEK 444 (530)
T ss_pred -----eEEEEEcccccccCCCCCcHHHHHHHhc---cC----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHH
Confidence 46999999864 566799999986421 11 11235688999999994 455555 457999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE-EEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM-FQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~ 246 (646)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++++|++|+++ +.|++
T Consensus 445 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 445 GRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCH
Confidence 9999999999999999999999999999999999999887 459999999975 688899999999999998 88888
Q ss_pred hhHH
Q 039035 247 KEVT 250 (646)
Q Consensus 247 ~~~~ 250 (646)
+++.
T Consensus 521 ~~~~ 524 (530)
T PRK15064 521 EEYL 524 (530)
T ss_pred HHHH
Confidence 7654
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-36 Score=345.85 Aligned_cols=210 Identities=26% Similarity=0.318 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||+++|+. ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.+++
T Consensus 4 ~i~~~nls~~~~~-----------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~--G~i~~~~---- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-----------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN--GEARPAP---- 66 (552)
T ss_pred EEEEeeEEEecCC-----------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEecC----
Confidence 6899999999952 1359999999999999999999999999999999999999977 9999975
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHc-c------------CCCCCHH---------------------HHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADF-R------------LGPISWS---------------------DKKQR 136 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~------------~~~~~~~---------------------~~~~~ 136 (646)
+..+|||+|++.+++.+||.||+.++... + ......+ +...+
T Consensus 67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (552)
T TIGR03719 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142 (552)
T ss_pred ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 24699999999999999999999875321 0 0000010 01245
Q ss_pred HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Q 039035 137 VENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVIL 216 (646)
Q Consensus 137 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~ 216 (646)
++++++.+|+.. .++. ++.|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+
T Consensus 143 ~~~~l~~~~l~~-~~~~-----~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIi 213 (552)
T TIGR03719 143 LEIAMDALRCPP-WDAD-----VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVA 213 (552)
T ss_pred HHHHHhhCCCCc-ccCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEE
Confidence 677788888843 3444 4679999999999999999999999999999999999999999999876 359999
Q ss_pred EecCCcHHHHhhcCeEEEEeCCeEE-EEcChhhHHH
Q 039035 217 TIHQPSSRIQLLLDHLIILARGQLM-FQGPPKEVTL 251 (646)
Q Consensus 217 ~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~~~ 251 (646)
+||++. .+..+||++++|++|+++ +.|+.++..+
T Consensus 214 isHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 214 VTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999975 588899999999999976 7888877544
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.4e-37 Score=380.87 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=186.0
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+|+|++++|+.+ ...+|+|||++|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.+
T Consensus 1282 ~g~I~f~nVsf~Y~~~----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~--G~I~IdG~d 1349 (1522)
T TIGR00957 1282 RGRVEFRNYCLRYRED----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE--GEIIIDGLN 1349 (1522)
T ss_pred CCcEEEEEEEEEeCCC----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC--CeEEECCEE
Confidence 3589999999999753 1359999999999999999999999999999999999999977 999999999
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~ 158 (646)
+.. ..+|++++|||||+.+|+. |++|||.... ..++ +++.++++..++. +..|+.+|+ .
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~-----~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS-----QYSD----EEVWWALELAHLKTFVSALPDKLDHECAE-G 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc-----CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-C
Confidence 753 5688999999999999997 9999996311 1232 3456666666654 346788875 3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. + .-+|+|++|++|
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVld~G 1495 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-I-MDYTRVIVLDKG 1495 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999998865 47999999999753 4 469999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++.+
T Consensus 1496 ~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1496 EVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 332
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.5e-37 Score=380.07 Aligned_cols=216 Identities=21% Similarity=0.312 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+|+||+++|+.. ...+|+||||+|+|||.+||+|+||||||||+++|.|+++|.+ |+|.+||.++
T Consensus 1307 G~I~f~nVsf~Y~~~----------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~--G~I~IDG~di 1374 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG----------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG--GEIRVNGREI 1374 (1560)
T ss_pred CeEEEEEEEEEeCCC----------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEEc
Confidence 579999999999643 2359999999999999999999999999999999999999977 9999999997
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 159 (646)
.. ..+|+.++||||++.+|+. |++|||.... ..+ ++++.++++..|+.+ ..|+.+|+ ..
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~-----~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G 1443 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL-----EAS----SAEVWAALELVGLRERVASESEGIDSRVLE-GG 1443 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCccc-----CCC----HHHHHHHHHHCCChHHHhhCcccccccccC-Cc
Confidence 53 5688999999999999987 9999995321 122 245777777777653 35788875 34
Q ss_pred CCCChHHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHG-PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~-P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|
T Consensus 1444 ~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G 1520 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHG 1520 (1560)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 57999999999999999996 89999999999999999999999999864 4799999999975 34579999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 1521 ~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1521 AVAEMGSPRELVM 1533 (1560)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999863
No 333
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.9e-37 Score=378.62 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC-CeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD-GKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~-g~~~ 89 (646)
.|+++||+++|+.++ ++.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++ |.++
T Consensus 382 ~I~~~nVsf~Y~~~~---------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~--G~I~i~~g~~i 450 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---------DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE--GDIIINDSHNL 450 (1466)
T ss_pred cEEEEEEEEEcCCCC---------CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC--CeEEEeCCcch
Confidence 799999999997531 2469999999999999999999999999999999999999987 999994 6765
Q ss_pred C---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccC---------CC------------------------------
Q 039035 90 S---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL---------GP------------------------------ 127 (646)
Q Consensus 90 ~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~---------~~------------------------------ 127 (646)
. ...+|+.+|||+|++.+|+. ||+||+.++..... ..
T Consensus 451 ~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1466)
T PTZ00265 451 KDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTT 529 (1466)
T ss_pred hhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccccc
Confidence 3 24567889999999999985 99999998631000 00
Q ss_pred -----C-----CHHHHHHHHHHHHHHcCCCc-------cccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 039035 128 -----I-----SWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS 190 (646)
Q Consensus 128 -----~-----~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts 190 (646)
. ..+..++++.++++.+++.+ ..||.+|. ....||||||||++|||||+.+|++||||||||
T Consensus 530 ~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTS 608 (1466)
T PTZ00265 530 DSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATS 608 (1466)
T ss_pred chhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 0 00112346777777776653 34677765 467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 191 GLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 191 gLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+||+.++..+.+.|+++++ +|+|+|+++|+++ .+ +.||+|++|++|
T Consensus 609 aLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 609 SLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 9999999999999999986 5899999999986 35 689999999987
No 334
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-36 Score=339.66 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=170.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||++|++||+++|+||||||||||+++|+|+.+|++ |+|.+++.
T Consensus 324 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~--G~i~~~~~--- 386 (556)
T PRK11819 324 VIEAENLSKSFGD------------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS--GTIKIGET--- 386 (556)
T ss_pred EEEEEeEEEEECC------------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCc---
Confidence 7999999999853 359999999999999999999999999999999999999977 99999541
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 168 (646)
..+||++|+. .+++.+||.|++.+..... ..... ..+++++++.+|+.+ ..++.+ .+|||||||
T Consensus 387 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~q 452 (556)
T PRK11819 387 -----VKLAYVDQSRDALDPNKTVWEEISGGLDII--KVGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERN 452 (556)
T ss_pred -----eEEEEEeCchhhcCCCCCHHHHHHhhcccc--ccccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHH
Confidence 1599999996 7888999999998864322 11111 224567899999963 345544 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-CeEE-EEcCh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR-GQLM-FQGPP 246 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~g~~ 246 (646)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.++||++++|++ |++. +.|+.
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 9999999999999999999999999999999999999873 4 8999999975 58889999999996 7776 56655
Q ss_pred hh
Q 039035 247 KE 248 (646)
Q Consensus 247 ~~ 248 (646)
++
T Consensus 529 ~~ 530 (556)
T PRK11819 529 QE 530 (556)
T ss_pred HH
Confidence 44
No 335
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.1e-36 Score=371.96 Aligned_cols=215 Identities=21% Similarity=0.316 Sum_probs=185.0
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+++||+++|+.. ...+|+|||++|+|||.+||+|+||||||||+++|.|+++ .+ |+|.+||.+
T Consensus 1215 ~g~I~f~nVs~~Y~~~----------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~--G~I~IdG~d 1281 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEA----------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TE--GEIQIDGVS 1281 (1490)
T ss_pred CCeEEEEEEEEEeCCC----------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CC--cEEEECCEE
Confidence 3589999999999742 2469999999999999999999999999999999999985 44 999999999
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~ 158 (646)
+.. ..+|+.++||||++.+|+. |++|||.... ..+ ++++.++++..+|. +..|+.+|+ .
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~-----~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE-----QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc-----CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 753 4678999999999999997 9999995421 122 34677788877764 346788875 3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
...||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+++|+++. + ..||+|++|++|
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGS 1427 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999875 47999999999753 4 469999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
++++.|+++++.
T Consensus 1428 ~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1428 SVKQYDSIQKLL 1439 (1490)
T ss_pred EEEEeCCHHHHH
Confidence 999999999885
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-35 Score=337.02 Aligned_cols=202 Identities=26% Similarity=0.404 Sum_probs=169.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|++|++||+++|+|||||||||||++|+|+.+|++ |+|.+++.
T Consensus 322 ~l~~~~l~~~~~~------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~--G~i~~~~~--- 384 (552)
T TIGR03719 322 VIEAENLSKGFGD------------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS--GTIKIGET--- 384 (552)
T ss_pred EEEEeeEEEEECC------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--eEEEECCc---
Confidence 7999999999853 359999999999999999999999999999999999999977 99999542
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 168 (646)
..+||++|+. .+++.+||.|++.+..... ..... ..+++++++.+|+.+ ..++.+ ..|||||||
T Consensus 385 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~q 450 (552)
T TIGR03719 385 -----VKLAYVDQSRDALDPNKTVWEEISGGLDII--QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERN 450 (552)
T ss_pred -----eEEEEEeCCccccCCCCcHHHHHHhhcccc--ccCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHH
Confidence 1599999996 4888999999998864321 11111 234567899999964 345544 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC-CeEE-EEcCh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR-GQLM-FQGPP 246 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~-G~iv-~~g~~ 246 (646)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+. .+.++||++++|++ |+++ +.|+.
T Consensus 451 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999999883 3 8999999975 57889999999987 5776 55654
Q ss_pred h
Q 039035 247 K 247 (646)
Q Consensus 247 ~ 247 (646)
+
T Consensus 527 ~ 527 (552)
T TIGR03719 527 S 527 (552)
T ss_pred H
Confidence 3
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-36 Score=307.27 Aligned_cols=200 Identities=25% Similarity=0.336 Sum_probs=165.9
Q ss_pred eEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEE-----------E
Q 039035 16 NLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVT-----------L 84 (646)
Q Consensus 16 ~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-----------~ 84 (646)
||+++|+.+ +.+|+|+| .+++||+++|+|||||||||||++|+|+++|++ |+|. +
T Consensus 5 ~~~~~y~~~-----------~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~--G~I~~~~~~~~~~~~~ 70 (255)
T cd03236 5 EPVHRYGPN-----------SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL--GKFDDPPDWDEILDEF 70 (255)
T ss_pred CcceeecCc-----------chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC--ceEeeccccchhhhhc
Confidence 677777532 25899999 599999999999999999999999999999987 9996 7
Q ss_pred CCeeCCcc--c-cc--ccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 85 DGKETSPS--L-IK--RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 85 ~g~~~~~~--~-~~--~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
+|+++... . .+ ..++|++|+..+++. ++.+++.+.. ...+.++.++++++.+||.+..++. +
T Consensus 71 ~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-------~~~~~~~~~~~~l~~~gl~~~~~~~-----~ 137 (255)
T cd03236 71 RGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-------KKKDERGKLDELVDQLELRHVLDRN-----I 137 (255)
T ss_pred cCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh-------chhHHHHHHHHHHHHcCCchhhcCC-----h
Confidence 78776421 1 11 247899999888884 8888887642 1223456789999999998766554 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++| +|+
T Consensus 138 ~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~ 215 (255)
T cd03236 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGE 215 (255)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCC
Confidence 579999999999999999999999999999999999999999999999888999999999975 577799999999 566
Q ss_pred EEEEc
Q 039035 240 LMFQG 244 (646)
Q Consensus 240 iv~~g 244 (646)
+.+.|
T Consensus 216 ~~~~~ 220 (255)
T cd03236 216 PGAYG 220 (255)
T ss_pred CCcce
Confidence 66554
No 338
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.3e-36 Score=338.35 Aligned_cols=197 Identities=24% Similarity=0.327 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|++ ..|+++|+++++||+++|+||||||||||+++|+|+++|++ |+|.++
T Consensus 340 ~l~~~~ls~~~~~-------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~--G~I~~~----- 399 (590)
T PRK13409 340 LVEYPDLTKKLGD-------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE--GEVDPE----- 399 (590)
T ss_pred EEEEcceEEEECC-------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEEe-----
Confidence 6999999998843 24899999999999999999999999999999999999987 999985
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..++.+ .+|||||||||
T Consensus 400 -----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRv 462 (590)
T PRK13409 400 -----LKISYKPQYIKPDYDGTVEDLLRSITDD----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRV 462 (590)
T ss_pred -----eeEEEecccccCCCCCcHHHHHHHHhhh----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHH
Confidence 1489999998888899999999875321 111 235788999999987666654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..++|++++|+ |++...|..
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999999999999999874 899999999975 5788999999996 588777763
No 339
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=286.58 Aligned_cols=218 Identities=29% Similarity=0.410 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|+++.+.+.. ..++++|+++|++|..|+++.|+|.||||||||+|+|+|.+.|++ |+|.++|.+++.
T Consensus 2 i~~~~~~~~f~~g~-------~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~--G~I~Idg~dVtk 72 (263)
T COG1101 2 ISLSNATKTFFKGT-------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS--GQILIDGVDVTK 72 (263)
T ss_pred cccccceeeecCCC-------hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC--ceEEECceeccc
Confidence 56777777775542 246789999999999999999999999999999999999999988 999999999875
Q ss_pred cc---ccccEEEEccCC--CCCCCCCHHHHHHHHHHccC-CCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCC
Q 039035 92 SL---IKRTSAYIMQED--RLFPMLTVFETLMFAADFRL-GPISW---SDKKQRVENLVDQL--GLTTTRNTHIGDEGTR 160 (646)
Q Consensus 92 ~~---~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~ 160 (646)
.. ....++-|+||+ ..++.||+.||+..+..-.. .+.+. ..+++...+-++.+ ||++..++++|
T Consensus 73 ~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig----- 147 (263)
T COG1101 73 KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG----- 147 (263)
T ss_pred CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----
Confidence 32 224577899998 47999999999998754211 11222 23334455556654 56777788877
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
-|||||||-+++++|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||+.. +..++.+|+++|++|+
T Consensus 148 lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~ 226 (263)
T COG1101 148 LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGK 226 (263)
T ss_pred hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCe
Confidence 5999999999999999999999999999999999999999999999875 5789999999976 4678999999999999
Q ss_pred EEEEc
Q 039035 240 LMFQG 244 (646)
Q Consensus 240 iv~~g 244 (646)
||.+-
T Consensus 227 IvlDv 231 (263)
T COG1101 227 IVLDV 231 (263)
T ss_pred EEEEc
Confidence 99763
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=338.76 Aligned_cols=202 Identities=24% Similarity=0.370 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+|++|++||+++|+|||||||||||++|+|..+|++ |+|.+++.
T Consensus 312 ~l~~~~l~~~y~~------------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~--G~i~~~~~--- 374 (638)
T PRK10636 312 LLKMEKVSAGYGD------------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS--GEIGLAKG--- 374 (638)
T ss_pred eEEEEeeEEEeCC------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CeEEECCC---
Confidence 7999999999853 359999999999999999999999999999999999999987 99999741
Q ss_pred cccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHH
Q 039035 91 PSLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGer 167 (646)
..+||++|+. .+.+..|+.+++.- .. .....++++++++.+++.. ..++++ +.||||||
T Consensus 375 -----~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGek 436 (638)
T PRK10636 375 -----IKLGYFAQHQLEFLRADESPLQHLAR---LA-----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEK 436 (638)
T ss_pred -----EEEEEecCcchhhCCccchHHHHHHH---hC-----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHH
Confidence 2589999974 35566788877531 11 1223457889999999963 455555 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE-EEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM-FQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~ 246 (646)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCH
Confidence 9999999999999999999999999999999999999987 34 9999999964 688899999999999997 88988
Q ss_pred hhHHH
Q 039035 247 KEVTL 251 (646)
Q Consensus 247 ~~~~~ 251 (646)
++...
T Consensus 513 ~~~~~ 517 (638)
T PRK10636 513 EDYQQ 517 (638)
T ss_pred HHHHH
Confidence 87643
No 341
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.8e-35 Score=285.45 Aligned_cols=226 Identities=24% Similarity=0.304 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEecccccc------------ccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcc
Q 039035 11 GLGFSNLTYTVTKKKKIE------------GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSL 78 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~ 78 (646)
.|+++||++.++...... +.....+..+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 588999999887542100 1113456789999999999999999999999999999999999999988
Q ss_pred eeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 79 KGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 79 ~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
|+|.++|+-...-. =.-.+.|.+|.+||+.+-+.+ .++++++.+++++++++.-+|.+..|.++
T Consensus 82 -G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~--~G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 82 -GKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLI--LGLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred -ceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 99999996432111 112356779999999987754 36788999999999999999999888776
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
+.+|-||+-|+++|.+...+|++||+||-.+--|+.-+++-.+.++++.++++|||+++|++. .+.++||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCC
Confidence 579999999999999999999999999999999999999999999999888899999999975 699999999999999
Q ss_pred eEEEEcChhhHHHHHHh
Q 039035 239 QLMFQGPPKEVTLHVNR 255 (646)
Q Consensus 239 ~iv~~g~~~~~~~~f~~ 255 (646)
++.+.|+++++.+++..
T Consensus 224 ~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 224 QIRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999999887654
No 342
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=350.66 Aligned_cols=223 Identities=28% Similarity=0.452 Sum_probs=203.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.+..+||++.|+.++ + +++++|+.|++||+.+++|||||||||++|+|+|..+|++ |++.++|.++.
T Consensus 564 ~~~~~~L~k~y~~~~----------~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~--G~a~i~g~~i~ 630 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD----------G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS--GEALIKGHDIT 630 (885)
T ss_pred eEEEcceeeeecchh----------h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc--ceEEEecCccc
Confidence 678888888886541 1 8999999999999999999999999999999999999988 99999999875
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
. ...++.+||+||+|.+++.+|.+|+|.+.++++ ++++.+.++.++.+++.+||.+.+|+.++ .+|||+
T Consensus 631 ~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr--G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~ 703 (885)
T KOG0059|consen 631 VSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR--GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGN 703 (885)
T ss_pred cccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc--CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcc
Confidence 3 236788999999999999999999999999876 56677778889999999999999988865 699999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|||+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||+|||.. ++...+|||+.+|.+|++...|++
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecCh
Confidence 9999999999999999999999999999999999999999999888999999995 578999999999999999999999
Q ss_pred hhHHHHHH
Q 039035 247 KEVTLHVN 254 (646)
Q Consensus 247 ~~~~~~f~ 254 (646)
+++...|.
T Consensus 783 q~LKsrfG 790 (885)
T KOG0059|consen 783 QELKSRYG 790 (885)
T ss_pred HHHHhhcC
Confidence 99987664
No 343
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.3e-35 Score=273.77 Aligned_cols=144 Identities=33% Similarity=0.459 Sum_probs=132.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++++|+++.|++ ..+++++|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|+
T Consensus 1 l~~~~l~~~~~~------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~--G~i~~~~~---- 62 (144)
T cd03221 1 IELENLSKTYGG------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--GIVTWGST---- 62 (144)
T ss_pred CEEEEEEEEECC------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc--eEEEECCe----
Confidence 478999998853 258999999999999999999999999999999999999877 99999984
Q ss_pred ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 92 SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 92 ~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
+.++|++| ||+||+||++
T Consensus 63 ----~~i~~~~~----------------------------------------------------------lS~G~~~rv~ 80 (144)
T cd03221 63 ----VKIGYFEQ----------------------------------------------------------LSGGEKMRLA 80 (144)
T ss_pred ----EEEEEEcc----------------------------------------------------------CCHHHHHHHH
Confidence 46899998 9999999999
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 172 IGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
||++|+.+|++++|||||+|||+.++..+.+.|+++ ++||+++||++. ++.+++|++++|++|+
T Consensus 81 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 81 LAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999987 479999999975 5778999999999985
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.1e-35 Score=335.05 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=170.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|++ +.+|+|+|++|++|++++|+|||||||||||++|+|..+|++ |+|.+ |.++
T Consensus 319 ~l~~~~l~~~~~~------------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~--G~i~~-~~~~- 382 (635)
T PRK11147 319 VFEMENVNYQIDG------------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS--GRIHC-GTKL- 382 (635)
T ss_pred eEEEeeeEEEECC------------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--cEEEE-CCCc-
Confidence 7999999999853 359999999999999999999999999999999999999977 99998 4321
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerq 168 (646)
.+||++|+. .+++.+||.|++.+.... . ... ....++.++++.+++. +..++.+ +.|||||||
T Consensus 383 ------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekq 447 (635)
T PRK11147 383 ------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V-MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERN 447 (635)
T ss_pred ------EEEEEeCcccccCCCCCHHHHHHhhccc-c-ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHH
Confidence 499999985 588999999999875321 0 011 1234678899999995 3455554 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe-CCeEEE-EcCh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA-RGQLMF-QGPP 246 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~-~G~iv~-~g~~ 246 (646)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++.. .|+.
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999999999999999999999999876 459999999964 6788999999998 798764 5655
Q ss_pred hhH
Q 039035 247 KEV 249 (646)
Q Consensus 247 ~~~ 249 (646)
++.
T Consensus 524 ~~y 526 (635)
T PRK11147 524 HDA 526 (635)
T ss_pred HHH
Confidence 443
No 345
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=266.93 Aligned_cols=192 Identities=28% Similarity=0.407 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~ 89 (646)
.+.++|++...++ ..+|-|+|++|.+||++.||||||||||||+..+.|-+.+. +++|++++|++++
T Consensus 2 ~l~l~nvsl~l~g------------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLRLPG------------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeecCCC------------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 5788999876654 46899999999999999999999999999999999998765 5789999999988
Q ss_pred Cc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 90 SP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
+. ...+|++|..+||+.+||.++|.+||.|+.... +.-+.++..++..+++.||....+.. |.+||||||-
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~---~KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrA 141 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPAT---LKGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRA 141 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEecCcc---cccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHH
Confidence 63 345789999999999999999999999875432 33346677899999999998876644 5689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecCCc
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN-IARSGSTVILTIHQPS 222 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~~~ 222 (646)
||++-|+|+..|+.++||||+|.||..-+.++.+.+-. +...|..+|.+|||..
T Consensus 142 RvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 142 RVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 99999999999999999999999999999999997755 4456999999999954
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.8e-34 Score=331.56 Aligned_cols=207 Identities=22% Similarity=0.327 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||++.|+++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.+++
T Consensus 507 ~~L~~~~ls~~y~~~-----------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~--G~I~~~~--- 570 (718)
T PLN03073 507 PIISFSDASFGYPGG-----------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS--GTVFRSA--- 570 (718)
T ss_pred ceEEEEeeEEEeCCC-----------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--ceEEECC---
Confidence 379999999998532 358999999999999999999999999999999999999977 9999875
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 168 (646)
+..+||++|+. .+.+++.++..+......+... .++++++++.+|+.+ ..++. ++.|||||||
T Consensus 571 -----~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkq 634 (718)
T PLN03073 571 -----KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKS 634 (718)
T ss_pred -----ceeEEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHH
Confidence 24699999975 3455666664332111111111 356788999999973 44444 4679999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE-EEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM-FQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~ 247 (646)
||+||++|+.+|++|||||||+|||+.++..+++.|++. +| |||++|||+. .+..+||++++|++|+++ +.|+.+
T Consensus 635 RvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHH
Confidence 999999999999999999999999999999998888765 34 9999999965 588899999999999998 788877
Q ss_pred hHHHH
Q 039035 248 EVTLH 252 (646)
Q Consensus 248 ~~~~~ 252 (646)
+...+
T Consensus 711 ~~~~~ 715 (718)
T PLN03073 711 DYKKT 715 (718)
T ss_pred HHHHH
Confidence 65443
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-34 Score=280.12 Aligned_cols=154 Identities=23% Similarity=0.412 Sum_probs=135.3
Q ss_pred EeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccc
Q 039035 15 SNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLI 94 (646)
Q Consensus 15 ~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~ 94 (646)
.||+++|++ +.+++++ +++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+
T Consensus 4 ~~l~~~~~~------------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~------ 62 (177)
T cd03222 4 PDCVKRYGV------------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG--DNDEWDGIT------ 62 (177)
T ss_pred CCeEEEECC------------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC--cEEEECCEE------
Confidence 578888753 3578884 8999999999999999999999999999999987 999999852
Q ss_pred cccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHH
Q 039035 95 KRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGV 174 (646)
Q Consensus 95 ~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 174 (646)
++|++|+.. ||||||||++||+
T Consensus 63 ---i~~~~q~~~-------------------------------------------------------LSgGq~qrv~lar 84 (177)
T cd03222 63 ---PVYKPQYID-------------------------------------------------------LSGGELQRVAIAA 84 (177)
T ss_pred ---EEEEcccCC-------------------------------------------------------CCHHHHHHHHHHH
Confidence 788888532 8999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE--cChhh
Q 039035 175 DIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSG-STVILTIHQPSSRIQLLLDHLIILARGQLMFQ--GPPKE 248 (646)
Q Consensus 175 ~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~--g~~~~ 248 (646)
+|+.+|++++|||||+|||+.++..+.+.++++++++ .|||++||++. .+.++||++++|+++-.++. |+|..
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9999999999999999999999999999999998765 99999999975 57789999999998766655 55543
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.3e-35 Score=335.56 Aligned_cols=200 Identities=21% Similarity=0.279 Sum_probs=163.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||++.++++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.++++ |+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~-----------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~--G~i~~~~--- 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-----------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG--GRLTKPA--- 513 (659)
T ss_pred CeEEEEeeEEECCCC-----------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CeEeecC---
Confidence 479999999988532 359999999999999999999999999999999999998876 9998764
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CCCCCCCChH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG----DEGTRGVSGG 165 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgG 165 (646)
++.++||+|++.+++. |++||+.++...... ...+..+++++++++.+|+.+..++..| ....+.||||
T Consensus 514 -----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgG 586 (659)
T TIGR00954 514 -----KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM-KRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGG 586 (659)
T ss_pred -----CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh-hccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHH
Confidence 4679999999998887 999999875321100 0011123467889999999865544321 1134689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
||||++|||+|+++|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++. .+.+|++++|+.
T Consensus 587 qkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL--WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH--HHhCCEEEEEeC
Confidence 99999999999999999999999999999999999998876 38999999999763 478999999973
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=330.81 Aligned_cols=208 Identities=25% Similarity=0.355 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||+|++||++||+||||||||||||+|+|..+|++ |+|.++|..
T Consensus 1 ~i~i~nls~~~g~------------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~--G~I~~~~~~-- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG--GSYTFPGNW-- 64 (638)
T ss_pred CEEEEEEEEEeCC------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEecCCC--
Confidence 4789999999954 369999999999999999999999999999999999999987 999998741
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHH-----------------------Hcc--CCCCCHHHHHHHHHHHHHHcC
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAA-----------------------DFR--LGPISWSDKKQRVENLVDQLG 145 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-----------------------~~~--~~~~~~~~~~~~v~~~l~~lg 145 (646)
.++|++|+.... ..|+.+++.-.. .+. .......+.+++++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 378888864333 245555442110 000 000011123467899999999
Q ss_pred CC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH
Q 039035 146 LT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSR 224 (646)
Q Consensus 146 L~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 224 (646)
+. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .
T Consensus 138 l~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~ 208 (638)
T PRK10636 138 FSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-F 208 (638)
T ss_pred CCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-H
Confidence 96 4556655 479999999999999999999999999999999999999999998875 579999999965 6
Q ss_pred HHhhcCeEEEEeCCeEE-EEcChhhHH
Q 039035 225 IQLLLDHLIILARGQLM-FQGPPKEVT 250 (646)
Q Consensus 225 i~~~~D~v~~L~~G~iv-~~g~~~~~~ 250 (646)
+.++||++++|++|+++ |.|+.+...
T Consensus 209 l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 209 LDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred HHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 88899999999999986 677766543
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-34 Score=359.12 Aligned_cols=207 Identities=26% Similarity=0.462 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|++++|+.+ .++.+|+|+|+++++||.++|+||||||||||+++|.|.++|.+ |.+.
T Consensus 614 ~I~~~~vsF~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~--G~i~------- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK---------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE--TSSV------- 675 (1495)
T ss_pred cEEEEeeEEEcCCC---------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC--CCEE-------
Confidence 69999999999743 13469999999999999999999999999999999999999876 7653
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCCCCCC
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LS 163 (646)
.+++.++||+|++.+++. |++|||.|+.. .+ +++.+++++..+| .+..+|.+|+.. ..||
T Consensus 676 --~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~-----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LS 742 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNA-TVRENILFGSD-----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNIS 742 (1495)
T ss_pred --EecCcEEEEcCccccccc-cHHHHhhcCCc-----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccC
Confidence 356789999999999986 99999998642 22 2345555555554 344578888754 4799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEK-VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||||++||||+.++|++++||||||+||+.++.++++. ++.+ .+|+|+|++||+++ ..+.+|+|++|++|++++
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999998765 4443 36899999999975 356799999999999999
Q ss_pred EcChhhHHH
Q 039035 243 QGPPKEVTL 251 (646)
Q Consensus 243 ~g~~~~~~~ 251 (646)
.|+.+++..
T Consensus 820 ~Gt~~eL~~ 828 (1495)
T PLN03232 820 EGTFAELSK 828 (1495)
T ss_pred ecCHHHHHh
Confidence 999988753
No 351
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=270.00 Aligned_cols=229 Identities=21% Similarity=0.344 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++++..+... .++....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||+++.
T Consensus 4 LLeV~nLsKtF~~~~~l---f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs--G~il~n~~~L~ 78 (267)
T COG4167 4 LLEVRNLSKTFRYRTGL---FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS--GEILINDHPLH 78 (267)
T ss_pred hhhhhhhhhhhhhhhhh---hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC--ceEEECCcccc
Confidence 47889999988654321 12334678999999999999999999999999999999999999987 99999999875
Q ss_pred cc---cccccEEEEccCCC--CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCCh
Q 039035 91 PS---LIKRTSAYIMQEDR--LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~---~~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 164 (646)
.. ...+.|-+++||+. +.|.+.+..-|....++.. .+..+++.+++.+.|+.+||-+ .++ -+++-||-
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T-~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~ 152 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNT-DLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAP 152 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcc-cCChHHHHHHHHHHHHHhccCccccc-----cchhhcCc
Confidence 32 23467999999984 7888888888887665432 3667788899999999999954 333 34678999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||++||||+.+|++++.||...+||...+.++.++.-+|.+ .|.+-|.++.+.- .+.+++|+|++|++|++|+.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeec
Confidence 999999999999999999999999999999999999999999986 4999999999864 68999999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|++.++..
T Consensus 232 G~t~~v~a 239 (267)
T COG4167 232 GSTADVLA 239 (267)
T ss_pred CChhhhhc
Confidence 99998864
No 352
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-35 Score=304.32 Aligned_cols=219 Identities=28% Similarity=0.502 Sum_probs=187.8
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
++.+.|+|+++.|..+ +++|+++||++++|+.+||+||||+||||++++|...+++.+ |.|.++|++
T Consensus 260 ~g~v~F~~V~F~y~~~-----------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s--G~I~id~qd 326 (497)
T COG5265 260 LGAVAFINVSFAYDPR-----------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS--GSITIDGQD 326 (497)
T ss_pred cceEEEEEEEeecccc-----------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC--ceEEEcchh
Confidence 3479999999999753 679999999999999999999999999999999999999987 999999998
Q ss_pred CC---cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCC
Q 039035 89 TS---PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKK-----QRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 89 ~~---~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
+. ...+|+.||.||||..||.+ |...|+.|+.. ..+.++.. +.+.+.++ .+.+..++.||.++.
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl- 398 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL- 398 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-
Confidence 74 35688999999999999887 99999988632 23444332 22333444 356678899997665
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.|||||||||+|||+++.+|++|++||.||.||..+.+++...|++++ .|+|-+++.|..+. +. -+|.|++|++|+|
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl~~g~i 475 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVLDNGRI 475 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEeeCCEE
Confidence 499999999999999999999999999999999999999999999987 58999999999874 44 4899999999999
Q ss_pred EEEcChhhHHH
Q 039035 241 MFQGPPKEVTL 251 (646)
Q Consensus 241 v~~g~~~~~~~ 251 (646)
++.|..+++..
T Consensus 476 ~erg~h~~ll~ 486 (497)
T COG5265 476 VERGTHEELLA 486 (497)
T ss_pred EecCcHHHHHH
Confidence 99999998864
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.1e-34 Score=275.54 Aligned_cols=157 Identities=27% Similarity=0.379 Sum_probs=132.0
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
.+.+|+|+|+++++||+++|+||||||||||||+|.+ .+ |+|.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~--G~v~~~~~~~~--~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----AS--GKARLISFLPK--FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cC--CcEEECCcccc--cccccEEEEhH-----------
Confidence 4679999999999999999999999999999999964 33 99999886321 22345788887
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHG--PPLLFLDEPTSG 191 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~--P~lllLDEPtsg 191 (646)
.++++.++|... .+++ ++.||||||||++||++|+.+ |++++|||||+|
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 235677788642 4443 468999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 192 LDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 192 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
||+.++..+.+.|++++++|+|||++||++. .+ +.+|++++|.+|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 9999999999999999878999999999975 34 67999999976544
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.4e-34 Score=355.77 Aligned_cols=206 Identities=26% Similarity=0.465 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcce-eEEEECCeeC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLK-GKVTLDGKET 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~-G~I~~~g~~~ 89 (646)
.++++|++++|+.+ .++.+|+|+|+++++||.++|+||||||||||+++|.|.+++. + |+|.+
T Consensus 614 ~I~~~nvsf~y~~~---------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~GG~I~l----- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK---------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR--SDASVVI----- 677 (1622)
T ss_pred ceEEEeeEEEccCC---------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC--CCceEEE-----
Confidence 69999999999743 1246899999999999999999999999999999999999874 5 78874
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCC
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGTRGV 162 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~L 162 (646)
++.++||+|++.++.. |++|||.|+.. .+ +++.+++++..+|. +..+|.+|+.. ..|
T Consensus 678 -----~~~Iayv~Q~p~Lfng-TIreNI~fg~~-----~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~L 741 (1622)
T PLN03130 678 -----RGTVAYVPQVSWIFNA-TVRDNILFGSP-----FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNI 741 (1622)
T ss_pred -----cCeEEEEcCccccCCC-CHHHHHhCCCc-----cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCC
Confidence 4579999999999886 99999998642 12 34566666666554 34578888754 579
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE-KVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||++||||+.++|++++||||||+||+.++.++++ .++.+. +|+|+|++||+++ ..+.+|+|++|++|+++
T Consensus 742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIK 818 (1622)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999998875 555553 5899999999974 45679999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
+.|+.+++..
T Consensus 819 e~Gt~~eL~~ 828 (1622)
T PLN03130 819 EEGTYEELSN 828 (1622)
T ss_pred EeCCHHHHHh
Confidence 9999988753
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-33 Score=325.99 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=163.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||++++||+++|+|||||||||||++|+|..+|++ |+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~--G~I~~~~~~-- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD--GRIIYEQDL-- 66 (635)
T ss_pred EEEEeeEEEEeCC------------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC--eEEEeCCCC--
Confidence 5899999999953 369999999999999999999999999999999999999987 999998631
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHH------------------------------HHHcc--CCCCCHHHHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMF------------------------------AADFR--LGPISWSDKKQRVE 138 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~------------------------------~~~~~--~~~~~~~~~~~~v~ 138 (646)
.++|++|++......+|.+++.. ...+. .......+.+++++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 25677765433333455554321 11000 00000112346789
Q ss_pred HHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Q 039035 139 NLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTI 218 (646)
Q Consensus 139 ~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~ 218 (646)
++++.+|+.. ++. +.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++|
T Consensus 141 ~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs 210 (635)
T PRK11147 141 EVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS 210 (635)
T ss_pred HHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 9999999962 333 46799999999999999999999999999999999999999999999873 5999999
Q ss_pred cCCcHHHHhhcCeEEEEeCCeEE-EEcChhhHH
Q 039035 219 HQPSSRIQLLLDHLIILARGQLM-FQGPPKEVT 250 (646)
Q Consensus 219 H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~~ 250 (646)
||+. .+.++||+++.|++|+++ +.|+.++..
T Consensus 211 Hd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 211 HDRS-FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred CCHH-HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 9965 578899999999999997 568776543
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=264.81 Aligned_cols=217 Identities=26% Similarity=0.449 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee--
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-- 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-- 88 (646)
.+++++||+.|... .-.+||||++.|||+++|+|+|||||||||+||++++.|+. |+|.+.-.+
T Consensus 6 LL~V~~lsk~Yg~~------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~--G~v~Y~~r~~~ 71 (258)
T COG4107 6 LLSVSGLSKLYGPG------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA--GTVTYRMRDGQ 71 (258)
T ss_pred ceeehhhhhhhCCC------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC--CeEEEEcCCCC
Confidence 68999999999754 35789999999999999999999999999999999999988 999986532
Q ss_pred -CC-----cc----cccccEEEEccCCC--CCCC----CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 039035 89 -TS-----PS----LIKRTSAYIMQEDR--LFPM----LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNT 152 (646)
Q Consensus 89 -~~-----~~----~~~~~i~yv~Q~~~--l~~~----lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 152 (646)
.+ .. ..|..-|+|.|++. +-.. -.+.|-+.-. +.......++...++++++.++..
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~-----G~RHYG~iR~~a~~WL~~VEI~~~--- 143 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAI-----GARHYGNIRAEAQDWLEEVEIDLD--- 143 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhh-----hhhhhhhHHHHHHHHHHhcccCcc---
Confidence 21 11 13445799999874 3222 2333333211 111234567788999999988743
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCe
Q 039035 153 HIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 153 ~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 231 (646)
++ |..|+..|||||||+.|||-|++.|++.|+||||-|||..-+.+++++++.|..+ |..++++|||.. .+.-++||
T Consensus 144 Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~r 221 (258)
T COG4107 144 RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADR 221 (258)
T ss_pred cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhc
Confidence 23 4568899999999999999999999999999999999999999999999999865 999999999964 56778999
Q ss_pred EEEEeCCeEEEEcChhhHHH
Q 039035 232 LIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 232 v~~L~~G~iv~~g~~~~~~~ 251 (646)
+++|++|++++.|-++++..
T Consensus 222 lmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 222 LMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred ceeecCCCEecccccccccc
Confidence 99999999999998888754
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=270.54 Aligned_cols=188 Identities=28% Similarity=0.406 Sum_probs=165.6
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
++.+||++.-. +..++.++||++.+||++-|.|||||||||||++|+|+.+|++ |+|.++|.+++.
T Consensus 3 L~a~~L~~~R~------------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~--G~v~~~~~~i~~ 68 (209)
T COG4133 3 LEAENLSCERG------------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA--GEVYWQGEPIQN 68 (209)
T ss_pred chhhhhhhccC------------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC--CeEEecCCCCcc
Confidence 55667766543 4579999999999999999999999999999999999999988 999999998764
Q ss_pred --ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 92 --SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 92 --~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
+.+++.+-|+-.++.+-+.+||+|||.|-.++... ...+.+.+.++.+||....|.+++ +||-|||||
T Consensus 69 ~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~-----~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRR 138 (209)
T COG4133 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS-----GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRR 138 (209)
T ss_pred chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC-----CchhhHHHHHHHcCcccccccchh-----hcchhHHHH
Confidence 23557788999899999999999999998766432 123568899999999998888875 799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
|+|||-+++.+++.|||||+++||......+-.++..-+.+|-.||.+||||..
T Consensus 139 vAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 139 VALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999999999899999999999865
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-33 Score=267.00 Aligned_cols=153 Identities=37% Similarity=0.661 Sum_probs=138.2
Q ss_pred EEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc--
Q 039035 14 FSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-- 91 (646)
Q Consensus 14 ~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-- 91 (646)
++|+++.|++ +.+++++|+++++||+++|+||||||||||+++|+|.+++.. |+|.++|.++..
T Consensus 2 ~~~~~~~~~~------------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~--G~i~~~~~~~~~~~ 67 (157)
T cd00267 2 IENLSFRYGG------------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS--GEILIDGKDIAKLP 67 (157)
T ss_pred eEEEEEEeCC------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--cEEEECCEEcccCC
Confidence 6788888853 259999999999999999999999999999999999998876 999999987643
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.++|++| |||||+||+
T Consensus 68 ~~~~~~~i~~~~q----------------------------------------------------------lS~G~~~r~ 89 (157)
T cd00267 68 LEELRRRIGYVPQ----------------------------------------------------------LSGGQRQRV 89 (157)
T ss_pred HHHHHhceEEEee----------------------------------------------------------CCHHHHHHH
Confidence 234567899988 999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+||++++.+|++++|||||+|||..++..+.+.+++++++++|++++||++. .+...||+++++++|+
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999877899999999975 5777899999999875
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-33 Score=320.90 Aligned_cols=181 Identities=27% Similarity=0.390 Sum_probs=153.4
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEE-----------ECCeeCCcc-----cccccEEE
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVT-----------LDGKETSPS-----LIKRTSAY 100 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~-----------~~g~~~~~~-----~~~~~i~y 100 (646)
.+|++++ .+++||+++|+||||||||||||+|+|.++|+. |+|. ++|+++... ..+..+++
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~--G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL--GDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC--ccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 5899999 999999999999999999999999999999987 9997 899876421 11234566
Q ss_pred EccCCCCCCC---CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH
Q 039035 101 IMQEDRLFPM---LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII 177 (646)
Q Consensus 101 v~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~ 177 (646)
.+|.....|. .||+|++... +.+++++++++.+||.+..|+.+ .+|||||||||+||++|+
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~al~ 228 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV-----------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAALL 228 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh-----------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHh
Confidence 6665443333 2999998631 23457899999999987777665 479999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 178 ~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus 229 ~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 229 RDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999988 999999999975 578899999999864
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-33 Score=347.85 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|+.. ++.+|+|+|+++++||+++|+||||||||||+++|+|.++|.+ |+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~--G~i~~~g---- 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE--GHVHMKG---- 699 (1522)
T ss_pred cEEEEEeEEEcCCC----------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC--cEEEECC----
Confidence 79999999999642 2369999999999999999999999999999999999999977 9999987
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCCCCCCCChHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVE--NLVDQLGL-TTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGer 167 (646)
.++||+|++.+++ .||+||+.|+.. .+.++.++.++ ++.+.++. .+..+|.+|.. ..+||||||
T Consensus 700 ------~i~yv~Q~~~l~~-~Ti~eNI~~g~~-----~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQk 766 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQN-DSLRENILFGKA-----LNEKYYQQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQK 766 (1522)
T ss_pred ------EEEEEcCCccccC-CcHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHH
Confidence 4899999998775 699999998632 12222111111 12233333 23345677654 568999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA--RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~--~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
||++||||++.+|++++||||||+||+.++..+.+.+.+.. .+|+|+|++||++.. + +.+|++++|++|+++..|+
T Consensus 767 qRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEeeCC
Confidence 99999999999999999999999999999999999997642 358999999999853 4 4599999999999999999
Q ss_pred hhhHHH
Q 039035 246 PKEVTL 251 (646)
Q Consensus 246 ~~~~~~ 251 (646)
.+++..
T Consensus 845 ~~~l~~ 850 (1522)
T TIGR00957 845 YQELLQ 850 (1522)
T ss_pred HHHHHh
Confidence 988753
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.9e-32 Score=339.47 Aligned_cols=191 Identities=25% Similarity=0.412 Sum_probs=157.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|.+ |+|.++| .++||+|++.+++. ||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~--G~i~~~g----------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE--GKIKHSG----------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECC----------EEEEEeCCCccCCc-cHHH
Confidence 469999999999999999999999999999999999999977 9999987 38999999999885 9999
Q ss_pred HHHHHHHccCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 039035 116 TLMFAADFRLGPISWSDKKQR-----VENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS 190 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts 190 (646)
|+.|+... +.+..++. .++.++.+ .+..+|.+|.. ...||||||||++||||++.+|+++||||||+
T Consensus 506 NI~~g~~~-----~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 506 NIIFGLSY-----DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHHhcccc-----chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99986421 11111111 12222222 22234667654 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 191 GLDSTSAYSVIEK-VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 191 gLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
|||+.++..+.+. ++++. +|+|+|++||++.. + +.||++++|++|+++..|+.+++.
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999984 66665 48999999999863 4 469999999999999999998875
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=300.34 Aligned_cols=207 Identities=30% Similarity=0.408 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++|+++.|+. +.+++|+|+++.+|+.+||+|+||||||||||+|+|...|++ |+|...+.
T Consensus 3 ~i~~~~ls~~~g~------------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~--G~i~~~~~--- 65 (530)
T COG0488 3 MITLENLSLAYGD------------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS--GEVTRPKG--- 65 (530)
T ss_pred eEEEeeeEEeeCC------------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC--CeEeecCC---
Confidence 6899999999953 479999999999999999999999999999999999999987 99987531
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHcc-------------CC---------------CCCHHHHHHHHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR-------------LG---------------PISWSDKKQRVENLVD 142 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~-------------~~---------------~~~~~~~~~~v~~~l~ 142 (646)
-.++|++|+....+..||.+.+.-+..-. ++ ....-+.+.+++.++.
T Consensus 66 -----~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 66 -----LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred -----ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 35899999999999999999887543210 00 0000112357888999
Q ss_pred HcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 143 QLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 143 ~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
.+|+.+. ++.++ +||||||+||+||++|+.+|++|+|||||++||..+..-+-+.|++. +| |+|++||| +
T Consensus 141 gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R 210 (530)
T COG0488 141 GLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-R 210 (530)
T ss_pred cCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-H
Confidence 9999876 66654 69999999999999999999999999999999999999999998854 46 99999999 6
Q ss_pred HHHHhhcCeEEEEeCCeEE-EEcChhhH
Q 039035 223 SRIQLLLDHLIILARGQLM-FQGPPKEV 249 (646)
Q Consensus 223 ~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 249 (646)
..+-++|++|+-++.|++. |.|.-+..
T Consensus 211 ~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 211 YFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHhhheEEecCCceeEecCCHHHH
Confidence 7899999999999999765 56665443
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=99.98 E-value=5.3e-32 Score=312.70 Aligned_cols=215 Identities=21% Similarity=0.258 Sum_probs=157.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI---ASGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~---~~~~~~G~I~~~g~ 87 (646)
.|+++|++++|++ +.+|+|+||+|++||.+||+|||||||||||++|+|+. .|.. |+|.+.++
T Consensus 177 ~I~i~nls~~y~~------------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~--g~I~~~~Q 242 (718)
T PLN03073 177 DIHMENFSISVGG------------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN--CQILHVEQ 242 (718)
T ss_pred eEEEceEEEEeCC------------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC--CEEEEEec
Confidence 7999999999953 35999999999999999999999999999999999964 3444 88876544
Q ss_pred eCCcc-----------------cccccEEEEccCCCCCCCCCHHHHHHHHHHc----------------cCCCCCHHHHH
Q 039035 88 ETSPS-----------------LIKRTSAYIMQEDRLFPMLTVFETLMFAADF----------------RLGPISWSDKK 134 (646)
Q Consensus 88 ~~~~~-----------------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~----------------~~~~~~~~~~~ 134 (646)
+.... ..++.++|++|++.+... ++.++....... ++........+
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 32100 012335667765432211 111111000000 00001111234
Q ss_pred HHHHHHHHHcCCC-ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 039035 135 QRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGST 213 (646)
Q Consensus 135 ~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 213 (646)
+++.++++.+|+. +..++. +.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~~-----~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVKA-----TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 5677788888885 334444 4579999999999999999999999999999999999999999999886 689
Q ss_pred EEEEecCCcHHHHhhcCeEEEEeCCeEE-EEcChhhH
Q 039035 214 VILTIHQPSSRIQLLLDHLIILARGQLM-FQGPPKEV 249 (646)
Q Consensus 214 ii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 249 (646)
||++||+.. .+.++||++++|++|+++ |.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999964 678899999999999996 67776654
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.7e-31 Score=331.21 Aligned_cols=191 Identities=30% Similarity=0.469 Sum_probs=153.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|++ |+|.++ +.+|||+|++.+++ .||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~--G~i~~~----------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE--GRVWAE----------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--cEEEEC----------CeEEEEeCCCccCC-CcHH
Confidence 4569999999999999999999999999999999999999977 999863 46999999998775 6999
Q ss_pred HHHHHHHHccCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeC
Q 039035 115 ETLMFAADFRLGPISWSDKK-----QRVENLVDQL--GLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDE 187 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDE 187 (646)
||+.|+... ..+... ...++.++.+ |+ ++.+|. ....|||||||||+|||||+.+|++++|||
T Consensus 739 enI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 739 GNILFFDEE-----DAARLADAVRVSQLEADLAQLGGGL----ETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred HHHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccc----hHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999985311 111111 1223344444 43 344543 356899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
||++||+.++..+++.+.....+|+|+|++||++.. + +.+|++++|++|++++.|+.+++.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999987543223358999999999753 4 679999999999999999988864
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=247.31 Aligned_cols=214 Identities=25% Similarity=0.375 Sum_probs=176.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee-
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE- 88 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~- 88 (646)
..|.++|+++++.-..+. .-.-++++|+||+++.||++++=||||+||||||++|-|-+.|++ |+|++.-..
T Consensus 3 ~~l~v~~~~KtFtlH~q~-----Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~--G~I~v~H~g~ 75 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQG-----GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE--GQILVRHEGE 75 (235)
T ss_pred ceeeeecchhheEeeecC-----CEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC--ceEEEEeCcc
Confidence 368899999887643221 123579999999999999999999999999999999999999988 999885432
Q ss_pred -CC-----c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 89 -TS-----P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 89 -~~-----~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++ + +..++.||||.|--...|.....|-..-.+.-+ +.+.+..++++.+++.+|++.+..-.. .
T Consensus 76 ~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~--gv~~~~a~~~a~~Ll~rLnlperLW~L----a 149 (235)
T COG4778 76 WVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR--GVPREVARAKAADLLTRLNLPERLWSL----A 149 (235)
T ss_pred hhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCCHHHhcC----C
Confidence 21 1 123567999999888888888777776654332 467778888999999999998655433 3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|.+.||||||||.|||.++.+=+||+|||||+.||..++.-++++|++-+.+|..+|=+-|| .+.-...+||++-+..
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 67899999999999999999999999999999999999999999999998899999999999 4444568999988764
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.1e-30 Score=263.39 Aligned_cols=191 Identities=26% Similarity=0.384 Sum_probs=136.0
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCcceeEEEEC-----------C-e-eCCccccc-ccEE
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLL-DGLAGRIASGSLKGKVTLD-----------G-K-ETSPSLIK-RTSA 99 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL-~~L~G~~~~~~~~G~I~~~-----------g-~-~~~~~~~~-~~i~ 99 (646)
+..+|+||||++++||+++|+||||||||||+ ..+.. +|++.+. | . .......+ ...+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 45799999999999999999999999999995 44431 1222110 0 0 00000111 2234
Q ss_pred EEccCCC--CCCCCCHH---HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHH
Q 039035 100 YIMQEDR--LFPMLTVF---ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRVSIG 173 (646)
Q Consensus 100 yv~Q~~~--l~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia 173 (646)
+..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. .+++||||||||++||
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la 149 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRLA 149 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHHH
Confidence 4444432 34455654 2222221111 11222233 56899999975 3444 4568999999999999
Q ss_pred HHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEc
Q 039035 174 VDIIHGP--PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQG 244 (646)
Q Consensus 174 ~~L~~~P--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g 244 (646)
++|+.+| ++|+|||||+|||+.++..+.+.|++++++|.|||++||++. .+ ++||++++| ++|+++++|
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9999998 599999999999999999999999999888999999999975 45 689999999 999999876
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2e-30 Score=307.87 Aligned_cols=206 Identities=28% Similarity=0.480 Sum_probs=175.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|.+++-+.. .....|+|||+++++|+++||+||-|||||+||.+|.|..+..+ |+|.++|.
T Consensus 518 ~i~i~~~sfsW~~~---------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s--G~v~v~gs--- 583 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSE---------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS--GSVAVNGS--- 583 (1381)
T ss_pred eEEEeeeeEecCCC---------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc--ceEEEcCe---
Confidence 78999999886542 12348999999999999999999999999999999999998866 99999984
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCCCCCC
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LS 163 (646)
++||+|++.++.. ||+||+.|+..+ + +++.+++++...|+ ..-.|.||++++ +||
T Consensus 584 -------iaYv~Q~pWI~ng-TvreNILFG~~~-----d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLS 645 (1381)
T KOG0054|consen 584 -------VAYVPQQPWIQNG-TVRENILFGSPY-----D----EERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLS 645 (1381)
T ss_pred -------EEEeccccHhhCC-cHHHhhhcCccc-----c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCc
Confidence 8999999998886 999999997543 2 34566666666554 334577887654 799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+++|||+-++.++++||.|.|++|++....+.+..-.-.-+++|+|++|||. +..+.+|.|++|++|++...
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecc
Confidence 9999999999999999999999999999999999999876554444689999999985 35678999999999999999
Q ss_pred cChhhHH
Q 039035 244 GPPKEVT 250 (646)
Q Consensus 244 g~~~~~~ 250 (646)
|+.+|+.
T Consensus 724 Gty~el~ 730 (1381)
T KOG0054|consen 724 GTYEELL 730 (1381)
T ss_pred cCHHHHH
Confidence 9999987
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.6e-31 Score=310.52 Aligned_cols=219 Identities=21% Similarity=0.292 Sum_probs=183.5
Q ss_pred CCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC
Q 039035 7 DFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG 86 (646)
Q Consensus 7 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g 86 (646)
+..|.|+|+|++.+|... ...+|||||++|+|||-+||+|..|||||||+++|.++..|.+ |+|.+||
T Consensus 1134 P~~G~I~f~~~~~RYrp~----------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~--G~I~IDg 1201 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPN----------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE--GEILIDG 1201 (1381)
T ss_pred CCCCeEEEEEeEEEeCCC----------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC--CeEEEcC
Confidence 344699999999999754 2469999999999999999999999999999999999999876 9999999
Q ss_pred eeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccC
Q 039035 87 KETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGD 156 (646)
Q Consensus 87 ~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~ 156 (646)
.++.. .++|++++.+||||.+|.. |||+||.=.. ..+++ .+=+.|+..+| +...|+.|.+
T Consensus 1202 vdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~-----e~sD~----~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1202 VDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD-----EYSDD----EIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred eecccccHHHHHhcCeeeCCCCceecC-ccccccCccc-----ccCHH----HHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 99864 5789999999999999998 9999985211 12322 23333333333 3345666643
Q ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 157 EGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
...++|-||||.+++||||+++++||+|||.|++.|+.+-..|-+.||+-= +++|||.+-|..+. +.+ +|||++|+
T Consensus 1272 -gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld 1347 (1381)
T KOG0054|consen 1272 -GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLD 1347 (1381)
T ss_pred -CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEee
Confidence 446899999999999999999999999999999999999999999999843 47999999999875 554 99999999
Q ss_pred CCeEEEEcChhhHHH
Q 039035 237 RGQLMFQGPPKEVTL 251 (646)
Q Consensus 237 ~G~iv~~g~~~~~~~ 251 (646)
+|+++++|+|.++..
T Consensus 1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred CCeEeecCChHHHHh
Confidence 999999999999874
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=3e-31 Score=246.10 Aligned_cols=134 Identities=38% Similarity=0.715 Sum_probs=120.7
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
|+|||+++++||+++|+||||||||||+++|+|..++.+ |+|.++|.++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~--G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS--GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE--EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999998866 999999999864 356788999999999999999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS 190 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts 190 (646)
+ ...++++++++.+++.+..++.++.. .+.||||||||++||++|+.+|++++|||||+
T Consensus 79 ~---------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N---------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H---------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c---------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 22456899999999988877777543 37899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-29 Score=258.57 Aligned_cols=196 Identities=28% Similarity=0.406 Sum_probs=153.8
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCC-----CCC---cce------eEEEECCeeCCcc----
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA-----GRI-----ASG---SLK------GKVTLDGKETSPS---- 92 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-----G~~-----~~~---~~~------G~I~~~g~~~~~~---- 92 (646)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .|. ... --|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 110 011 111 2367777665320
Q ss_pred ---------cccc----------------cEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC
Q 039035 93 ---------LIKR----------------TSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT 147 (646)
Q Consensus 93 ---------~~~~----------------~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 147 (646)
.+|+ .+.|..++......+||.|++.|...++ ..+++.++++.+||.
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~--------~~~~~~~~L~~vgL~ 159 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP--------KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh--------hHHHHHHHHHHcCCc
Confidence 0110 2456666666678899999999876532 124677899999997
Q ss_pred c-cccccccCCCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 148 T-TRNTHIGDEGTRGVSGGERRRVSIGVDIIHG---PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 148 ~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~---P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
+ ..+.. ++.||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++.
T Consensus 160 ~l~l~~~-----~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~- 233 (261)
T cd03271 160 YIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD- 233 (261)
T ss_pred hhhhcCc-----cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 6 34443 468999999999999999996 7999999999999999999999999999988999999999975
Q ss_pred HHHhhcCeEEEE------eCCeEEEEcCh
Q 039035 224 RIQLLLDHLIIL------ARGQLMFQGPP 246 (646)
Q Consensus 224 ~i~~~~D~v~~L------~~G~iv~~g~~ 246 (646)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 579999999 89999999874
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=267.70 Aligned_cols=203 Identities=23% Similarity=0.390 Sum_probs=174.2
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----ccccccEEEEccC---CCCCCC
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP----SLIKRTSAYIMQE---DRLFPM 110 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~---~~l~~~ 110 (646)
.++|+||++++||+++|-|-=|||+|-|+++|.|..++.+ |+|.+||+++.. ...+..++|||.| +.++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~--G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS--GEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCC--ceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999877766 999999998753 2456789999987 468999
Q ss_pred CCHHHHHHHHHHccCC---CCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 039035 111 LTVFETLMFAADFRLG---PISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLD 186 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLD 186 (646)
++|.||+.++..-+.. -++....++.++++.+.+++... .+.. +..||||.||||.||+.|..+|++||||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999988322221 24556667789999999999632 3344 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|||.|.|.-++.+|.+++++++++|++||+++.+. +|+..+||||++|++|+++..-+.++
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999996 47889999999999999987544443
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=9.4e-29 Score=274.43 Aligned_cols=201 Identities=28% Similarity=0.371 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|++. +.+++++||.+++|+.+||+||||+|||||||+|+|...|.+ |+|.+.-
T Consensus 321 vl~~~~~~~~y~~~-----------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~--G~v~~g~---- 383 (530)
T COG0488 321 VLEFENVSKGYDGG-----------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS--GTVKVGE---- 383 (530)
T ss_pred eEEEeccccccCCC-----------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCC--ceEEeCC----
Confidence 89999999999642 479999999999999999999999999999999999998875 9998753
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerq 168 (646)
.-.+||..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++... ..++| +.||||||.
T Consensus 384 ----~v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~----~~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~ 446 (530)
T COG0488 384 ----TVKIGYFDQHRDELDPDKTVLEELSEGF----PD----GDEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKA 446 (530)
T ss_pred ----ceEEEEEEehhhhcCccCcHHHHHHhhC----cc----ccHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHH
Confidence 13489999986 4558889999986432 11 115678999999999743 34444 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE-cChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ-GPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~-g~~~ 247 (646)
|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||++|||. ..+..++++++.+.+ ++..+ |..+
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHH
Confidence 999999999999999999999999999999999998876 46999999995 579999999999998 55444 7655
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
+..
T Consensus 522 ~y~ 524 (530)
T COG0488 522 DYL 524 (530)
T ss_pred HHH
Confidence 544
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=2.4e-30 Score=239.80 Aligned_cols=197 Identities=27% Similarity=0.460 Sum_probs=170.7
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
-|-.+|+.+..||++-++|||||||||||-.++|+++ .+ |+|.++|.++.. .++.++-+|..|+..-...|.|+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GS--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CC--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 3678999999999999999999999999999999885 44 999999999753 34566778999988777778999
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHh-----CC--CEEEEeC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH-----GP--PLLFLDE 187 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-----~P--~lllLDE 187 (646)
.+|.+. . +.++....++++.+.++|++...+. +.+|||||-|||-+|...+. || ++|++||
T Consensus 91 ~YL~L~----q---P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDE 158 (248)
T COG4138 91 HYLTLH----Q---PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158 (248)
T ss_pred hhhhhc----C---chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecC
Confidence 988652 2 3456677889999999998776554 46899999999999987763 55 6999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
|.++||......+-++|.+++++|.+||++.||.+. ..+.+|++++|++|++...|..+|+.
T Consensus 159 P~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999999999999999999876 56789999999999999999999875
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=3.1e-29 Score=247.38 Aligned_cols=166 Identities=20% Similarity=0.314 Sum_probs=132.4
Q ss_pred cceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-------ceeEEEECCeeCCcccccccEEEEccCCCCCCCCC
Q 039035 40 NKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-------LKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 40 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-------~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lT 112 (646)
+++++++++| +++|+||||||||||+++|+|+..+.. ..|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7799999999 999999999999999999999875431 1257888887654333457899999998766
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCC
Q 039035 113 VFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII----HGPPLLFLDEP 188 (646)
Q Consensus 113 v~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~P~lllLDEP 188 (646)
|. .. ..++++++++. .+..++ .++.||||||||++||++++ .+|++++||||
T Consensus 89 ------~~--~~--------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS--II--------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee--EE--------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 00 12456677776 333333 35689999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 189 TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 189 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|+|||+..+..+.+.|+++++ +.|||++||++. .+ +.+|+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEEe
Confidence 999999999999999999976 689999999975 34 68999999875
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.1e-27 Score=244.12 Aligned_cols=184 Identities=16% Similarity=0.268 Sum_probs=132.6
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc----------------CCCCCccee--------EEEECCee--
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG----------------RIASGSLKG--------KVTLDGKE-- 88 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G----------------~~~~~~~~G--------~I~~~g~~-- 88 (646)
++.++++++ |++++|+|||||||||||++|++ ++.+++ | +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~--~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGS--GPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCC--CCCCceEEEEEEEEcCCCc
Confidence 345778876 78999999999999999999983 333333 4 56666532
Q ss_pred --CC--cccccccEEEEccCCCCCC-CCCHHHHHHHHHHccCCCCCHH--HHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 89 --TS--PSLIKRTSAYIMQEDRLFP-MLTVFETLMFAADFRLGPISWS--DKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 89 --~~--~~~~~~~i~yv~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
.. ....++.++|++|+..+++ ..|..|...+...+........ ..+.++.+ .+++.+..+. .++.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccc-----cccc
Confidence 11 1235677999999887777 4677776666554422111000 00122333 3444433333 3467
Q ss_pred CChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 162 VSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ +.+||+++|++ ++.++||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999876 78999999985 4678999999986
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=2.3e-27 Score=243.17 Aligned_cols=186 Identities=19% Similarity=0.287 Sum_probs=139.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe-eC-Cc----ccccccEEEEccCC---------CCCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK-ET-SP----SLIKRTSAYIMQED---------RLFP 109 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~-~~-~~----~~~~~~i~yv~Q~~---------~l~~ 109 (646)
.+.+| +++|+||||||||||+++|++.+.+.. .|+++..|. ++ .. ...+..+++++|++ .+.|
T Consensus 22 ~~~~~-~~~IvG~NGsGKStll~Ai~~ll~~~~-~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 22 GFDPQ-FNAITGLNGSGKSNILDAICFVLGITN-LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred cCCCC-eEEEECCCCCCHHHHHHHHHHHhcccc-cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 34455 999999999999999999999987642 267887776 32 11 11234799999985 3467
Q ss_pred CCCHHHHHHHHHHccCCCC-CHHHHHHHHHHHHHHcCCCccccc---------------cccCCCCCCCChHHHHHHHHH
Q 039035 110 MLTVFETLMFAADFRLGPI-SWSDKKQRVENLVDQLGLTTTRNT---------------HIGDEGTRGVSGGERRRVSIG 173 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~ia 173 (646)
.+||.+++.+....+. .. .++...++++++++.+|+...... ...+..+++||||||||++||
T Consensus 100 ~ltV~r~I~~~~~~~~-~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 100 EITVTRQIVLGGTNKY-LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred eEEEEEEEEcCCceEE-EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 8899988865432211 01 122345789999999999611000 112344678999999999999
Q ss_pred HHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 174 VDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 174 ~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
++|+ .+|+++++||||+|||+..+..+.+.|++++ +|.|||++||++ ++.+.+|+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9998 5789999999999999999999999999985 489999999994 4677899998775
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.6e-28 Score=244.94 Aligned_cols=177 Identities=17% Similarity=0.252 Sum_probs=134.0
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++.+++++++ ++++|+||||||||||+++|.- ++|.+.. ...++++++++|+..+++.+|+.
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~------------~~G~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF------------VFGFRAS-KMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH------------HhccCHH-HhhhhhHHHHhcCCCCCCCCceE
Confidence 3568888887 8999999999999999999972 1232221 11125689999998889999999
Q ss_pred HHHHHHHHcc------CCCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHh----CCCE
Q 039035 115 ETLMFAADFR------LGPISWSDKKQ--RVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH----GPPL 182 (646)
Q Consensus 115 e~l~~~~~~~------~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----~P~l 182 (646)
|.+.+..... ..+...++... ..+++++.++|.+..++++ +.||+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 8876654321 01111111111 1256667778877666654 4799999999999999974 4799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 183 LFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 183 llLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 67888888985 47789999999975
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=7.1e-27 Score=231.93 Aligned_cols=166 Identities=20% Similarity=0.283 Sum_probs=127.9
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCcceeEEEECCeeCCcccccccEEEEccCC-----CCCCCC
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLA----GRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQED-----RLFPML 111 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~----G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~-----~l~~~l 111 (646)
..++++.+| +++|+|||||||||||++|. |...++. |.+..+...+.....+..+++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~--~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS--KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc--ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 345677788 99999999999999999995 8887765 65552222223333456799999987 344556
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH------HHHHHHHHhCCCEEEE
Q 039035 112 TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR------VSIGVDIIHGPPLLFL 185 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~~L~~~P~lllL 185 (646)
|+.|++.+. .. +.+++.+ +..++.||+||+|| ++||++++.+|+++++
T Consensus 92 ~~~~~~~~~--------~~----~~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 92 AILENVIFC--------HQ----GESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred hHhhceeee--------ch----HHHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888887542 11 1233333 23356799999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 186 DEPTSGLDSTSAY-SVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 186 DEPtsgLD~~~~~-~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
||||++||+..+. .+.+.|++++++ |.|||++||++. ..+.+|+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 899999999965 3467999999865
No 379
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=7.8e-26 Score=240.65 Aligned_cols=221 Identities=23% Similarity=0.412 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC-
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET- 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~- 89 (646)
.|+++||+..-.. ....+++|||+++.||+++|.|-.|-|-+.|+.+|+|+.++.+ |+|.++|+++
T Consensus 257 vL~V~~L~v~~~~-----------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~--G~I~l~G~~v~ 323 (501)
T COG3845 257 VLEVEDLSVKDRR-----------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS--GRILLNGKDVL 323 (501)
T ss_pred EEEEeeeEeecCC-----------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC--ceEEECCEecc
Confidence 7999999875432 2467999999999999999999999999999999999998876 9999999996
Q ss_pred ---Ccc-cccccEEEEccCC---CCCCCCCHHHHHHHHHHc-----cCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 039035 90 ---SPS-LIKRTSAYIMQED---RLFPMLTVFETLMFAADF-----RLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDE 157 (646)
Q Consensus 90 ---~~~-~~~~~i~yv~Q~~---~l~~~lTv~e~l~~~~~~-----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 157 (646)
+.. ..+..+||||+|. .+-+.+|+.||+.+...- +.+-+++.+.++...++++++++....- ..
T Consensus 324 ~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~ 399 (501)
T COG3845 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DA 399 (501)
T ss_pred ccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Cc
Confidence 222 2346799999986 478899999999886542 1122567788889999999999863211 12
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 158 GTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
..+.||||++||+-+||+|..+|++|+..+||.|||..+.+.|.+.|.+.+++|+.|++++-+.+ ++++++|||.+|.+
T Consensus 400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~ 478 (501)
T COG3845 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE 478 (501)
T ss_pred chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC
Confidence 34689999999999999999999999999999999999999999999999999999999999964 79999999999999
Q ss_pred CeEEEEcChhhH
Q 039035 238 GQLMFQGPPKEV 249 (646)
Q Consensus 238 G~iv~~g~~~~~ 249 (646)
|+++...++++.
T Consensus 479 Gri~~~~~~~~~ 490 (501)
T COG3845 479 GRIVGIVPPEEA 490 (501)
T ss_pred CceecccccccC
Confidence 999988887764
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=3.5e-26 Score=228.62 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=125.2
Q ss_pred cceeEEEe-CCeEEEEECCCCCcHHHHHHHHHcCC-CCCcceeEEEECC--eeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 40 NKITGDAP-KGCITAVMGPSGAGKSTLLDGLAGRI-ASGSLKGKVTLDG--KETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 40 ~~vs~~i~-~Ge~~aI~GpsGaGKSTLL~~L~G~~-~~~~~~G~I~~~g--~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
++++|... +|++++|+|||||||||||++|++.+ .+.. +....+. ..+.....+..+++++|++.... ++..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~--~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTP--RYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcc--ccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 45666543 58999999999999999999999644 2222 3333221 11222234566899999874211 1111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHh----------CCCEEEE
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH----------GPPLLFL 185 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----------~P~lllL 185 (646)
..+.+.++..+.+ .++..++.+..+. .++.||||||||++||++|+. +|++++|
T Consensus 94 ---------~~gl~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll 157 (213)
T cd03279 94 ---------SRGLDYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI 157 (213)
T ss_pred ---------ecCCCHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE
Confidence 1123332222211 2333334443333 356799999999999999985 5789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 186 DEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 186 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
||||+|||+.++..+.+.|++++++|.|||++||++. .+...+|+++++++|.
T Consensus 158 DEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 158 DEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999999877999999999975 5778999999999875
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=9e-27 Score=239.85 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++|+.|.|.... -=+..||++|++||++-|+|.||||||||++.|.|+.+|++ |+|++||+|+
T Consensus 321 ~~lelrnvrfay~~~~-----------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs--G~I~ldg~pV 387 (546)
T COG4615 321 KTLELRNVRFAYQDNA-----------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS--GEILLDGKPV 387 (546)
T ss_pred cceeeeeeeeccCccc-----------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC--CceeECCccC
Confidence 3899999999997542 34789999999999999999999999999999999999988 9999999998
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 166 (646)
+. +++|+-++-|+-|-++|+.+=-.| .. ...+.++.+++++.|.+.-.-.-|+-.+-.||.||
T Consensus 388 ~~e~ledYR~LfSavFsDyhLF~~ll~~e-----------~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQ 453 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSDYHLFDQLLGPE-----------GK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQ 453 (546)
T ss_pred CCCCHHHHHHHHHHHhhhHhhhHhhhCCc-----------cC---CChHHHHHHHHHHHHhhhhcccCCcccccccccch
Confidence 75 457777777888777777521111 10 12356888999998876543333333456799999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN-IARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||+++-.|++-+-+|+++||=-+.-||.-+..+.+.+-. ++++|+||+.+|||- .-+..+||++.+++|++++.-
T Consensus 454 kKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 454 KKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999999999987655 556799999999994 367899999999999998764
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=4.8e-25 Score=268.62 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=151.6
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHH---------HHHcCCCC-Cccee-----EEEECCeeCCc--c-------
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLD---------GLAGRIAS-GSLKG-----KVTLDGKETSP--S------- 92 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~---------~L~G~~~~-~~~~G-----~I~~~g~~~~~--~------- 92 (646)
..|+|+|++|++||+++|.|+||||||||++ .|.|...+ ...+| -|.++..++.. .
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 3799999999999999999999999999999 55554322 01111 12333332210 0
Q ss_pred ----ccc---------c-----cEEEEccC--------------------------------------CCCCCCCCHHHH
Q 039035 93 ----LIK---------R-----TSAYIMQE--------------------------------------DRLFPMLTVFET 116 (646)
Q Consensus 93 ----~~~---------~-----~i~yv~Q~--------------------------------------~~l~~~lTv~e~ 116 (646)
..| + ...|.++. ...+...||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 001 0 01112221 024567899999
Q ss_pred HHHHHHccCC-CCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHH---hCCCEEEEeCCCCC
Q 039035 117 LMFAADFRLG-PISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDII---HGPPLLFLDEPTSG 191 (646)
Q Consensus 117 l~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~---~~P~lllLDEPtsg 191 (646)
|.++..-... ....++..+++ ++++.+||.+. .+.. +.+||||||||++||++|+ .+|+++||||||+|
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsG 842 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTG 842 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCC
Confidence 9887542111 12234555666 58899999764 4544 4579999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe------CCeEEEEcChhhHHH
Q 039035 192 LDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA------RGQLMFQGPPKEVTL 251 (646)
Q Consensus 192 LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~g~~~~~~~ 251 (646)
||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 843 LD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 843 LHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999988999999999975 45 7999999996 789999999988753
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=3e-25 Score=245.21 Aligned_cols=196 Identities=26% Similarity=0.362 Sum_probs=159.9
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+..-+.. +..|++.++.+++||-+.|.||||||||||+|+|+|+-+.++ |+|..-
T Consensus 391 ~~i~~~nl~l~~p~~-----------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~--G~I~~P---- 453 (604)
T COG4178 391 HGITLENLSLRTPDG-----------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMP---- 453 (604)
T ss_pred ceeEEeeeeEECCCC-----------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC--CceecC----
Confidence 489999999877643 479999999999999999999999999999999999998877 887653
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CCCCCCCChHHHH
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIG-DEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerq 168 (646)
-...+-|+||.+.+... |.+|-+.|..... +-..+.+.++|.++||.+..++.=+ ++.-+.||+||||
T Consensus 454 ----~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~------~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQ 522 (604)
T COG4178 454 ----ADSALLFLPQRPYLPQG-TLREALCYPNAAP------DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522 (604)
T ss_pred ----CCCceEEecCCCCCCCc-cHHHHHhCCCCCC------CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHH
Confidence 12347899999998777 9999998753221 1224568889999999876654221 2345789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
|+++||.|+++|++++|||-|++||+.+...+++.+++-. .+.|||.+.|++. +..+.++.+-+.
T Consensus 523 RlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999999998743 3799999999975 456667655544
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=1.9e-24 Score=253.79 Aligned_cols=126 Identities=29% Similarity=0.437 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHHHhCC---CEEEEe
Q 039035 111 LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP---PLLFLD 186 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P---~lllLD 186 (646)
+||.|++.|...+. . ..+..+.++.+||.. ..+.. +.+||||||||+.||++|+.+| ++++||
T Consensus 792 ltv~E~l~~f~~~~--~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP--K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch--h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78999998876432 1 123467899999975 34444 4579999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
|||+|||+.....+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999999975 35 579999999 6899999999998754
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.9e-25 Score=211.47 Aligned_cols=231 Identities=23% Similarity=0.352 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-c-ceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-S-LKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~-~~G~I~~~g~~ 88 (646)
.|.++||+..+.... +...++++||+++..||+-+++|.||||||-..|+|+|..+.. . +.-..++++.+
T Consensus 3 LLDIrnL~IE~~Tsq--------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 3 LLDIRNLTIEFKTSQ--------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred cccccceEEEEecCC--------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 367889998887653 3467999999999999999999999999999999999987643 1 11345566655
Q ss_pred C---Cccc----ccccEEEEccCCC--CCCCCCHHHHHHHHHHccC--CC-CC-HHHHHHHHHHHHHHcCCCcccccccc
Q 039035 89 T---SPSL----IKRTSAYIMQEDR--LFPMLTVFETLMFAADFRL--GP-IS-WSDKKQRVENLVDQLGLTTTRNTHIG 155 (646)
Q Consensus 89 ~---~~~~----~~~~i~yv~Q~~~--l~~~lTv~e~l~~~~~~~~--~~-~~-~~~~~~~v~~~l~~lgL~~~~~~~vg 155 (646)
+ ++.. ..+.|++++|++. +-|.-+|...|--...... ++ .. -.-+++++-++|.++|+.+..| +.
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM 152 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IM 152 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--HH
Confidence 3 2222 2345789999984 5565555544432211110 11 00 0124567889999999987665 44
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
..+|.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|.||++++||.. .+.+.||++-+
T Consensus 153 ~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~V 231 (330)
T COG4170 153 RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINV 231 (330)
T ss_pred HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEE
Confidence 678899999999999999999999999999999999999999999999999986 5999999999975 58999999999
Q ss_pred EeCCeEEEEcChhhHHHH
Q 039035 235 LARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 235 L~~G~iv~~g~~~~~~~~ 252 (646)
|.-|+-++.++.+++...
T Consensus 232 lYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 232 LYCGQTVESAPSEELVTM 249 (330)
T ss_pred EEecccccccchhHHhcC
Confidence 999999999999998753
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=3.8e-23 Score=242.46 Aligned_cols=125 Identities=28% Similarity=0.419 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHh---CCCEEEE
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIH---GPPLLFL 185 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~---~P~lllL 185 (646)
.+||.|.+.|...+. . ..+..++++.+||... .+.. +++|||||+||+.||++|+. +|++++|
T Consensus 789 ~~tv~e~~~f~~~~~--~------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--S------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc--c------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 367777777765431 1 1235678899999642 3433 46899999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhH
Q 039035 186 DEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEV 249 (646)
Q Consensus 186 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~ 249 (646)
||||+|||+..+..+.+.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988999999999975 35 579999999 78999999998765
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.6e-24 Score=231.58 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..+.++|+++.|+.+ -.++++++|-+.+++-+|++||||+|||||||++.|.+.|.. |.|.-.-
T Consensus 388 pvi~~~nv~F~y~~~-----------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~--G~vs~~~--- 451 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN-----------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI--GMVSRHS--- 451 (614)
T ss_pred CeEEEeccccCCCCc-----------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc--ccccccc---
Confidence 378899999988754 259999999999999999999999999999999999999977 8875432
Q ss_pred CcccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 90 SPSLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
..++++-.|+. .+.-..++-|++.=. .+.....+.+..++.++||....++ ...++||+|||
T Consensus 452 -----H~~~~~y~Qh~~e~ldl~~s~le~~~~~-------~~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr 515 (614)
T KOG0927|consen 452 -----HNKLPRYNQHLAEQLDLDKSSLEFMMPK-------FPDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQR 515 (614)
T ss_pred -----cccchhhhhhhHhhcCcchhHHHHHHHh-------ccccchHHHHHHHHHHhCCCccccc----cchhhcccccc
Confidence 22344555543 344455777766421 1223446778999999999844332 23468999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE-EEEcCh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL-MFQGPP 246 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~g~~ 246 (646)
+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+. ..+||+++||.. .|.++++++++..+|.+ .+.|+.
T Consensus 516 ~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 516 RRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999999999999988875 458999999965 68999999999998765 466654
Q ss_pred hh
Q 039035 247 KE 248 (646)
Q Consensus 247 ~~ 248 (646)
..
T Consensus 592 ~~ 593 (614)
T KOG0927|consen 592 EI 593 (614)
T ss_pred HH
Confidence 43
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=7.3e-24 Score=226.51 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=149.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.+.+.|+|+++.+ +.+++|+++++.+|+-++|+|||||||||+|++|+|...|....=.++.-.+++.
T Consensus 75 dvk~~sls~s~~g------------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ 142 (614)
T KOG0927|consen 75 DVKIESLSLSFHG------------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIE 142 (614)
T ss_pred cceeeeeeeccCC------------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCC
Confidence 6888999988754 5799999999999999999999999999999999999987542233333333332
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHH------------------HHccCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFA------------------ADFRLGPISWSDKKQRVENLVDQLGLT-TTRN 151 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~------------------~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 151 (646)
+... +.+-+|.+ +.-..+.-+.+- ...|+..++.+..+.++.++|..+|.. +..+
T Consensus 143 ps~~-~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~ 216 (614)
T KOG0927|consen 143 PSEK-QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQD 216 (614)
T ss_pred CchH-HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHH
Confidence 2110 00111110 000000000000 000111123344455677777777764 3344
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCe
Q 039035 152 THIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 152 ~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 231 (646)
+. +.++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ .++++++|.. +.+-..|.+
T Consensus 217 k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~Q-Dfln~vCT~ 288 (614)
T KOG0927|consen 217 KK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQ-DFLNGVCTN 288 (614)
T ss_pred HH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecch-hhhhhHhhh
Confidence 44 467999999999999999999999999999999999999999888876532 2899999985 568899999
Q ss_pred EEEEeCCe-EEEEcChhhHH
Q 039035 232 LIILARGQ-LMFQGPPKEVT 250 (646)
Q Consensus 232 v~~L~~G~-iv~~g~~~~~~ 250 (646)
|+-|.+++ +.|.|+.++..
T Consensus 289 Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 289 IIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hheecccceeeecCCHHHHh
Confidence 99999999 55678776654
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.8e-23 Score=205.20 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=122.8
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC----CcccccccEEEEccCCCCCCCCCH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET----SPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~----~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
-++++++++.+| +.+|+|||||||||||.+|........ . ....|... ....-...+.+++|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~--~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA--S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc--c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 346788888888 889999999999999999974332211 0 00112111 111113457888887665541
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH----HhCCCEEEEeCCC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI----IHGPPLLFLDEPT 189 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L----~~~P~lllLDEPt 189 (646)
... ...++.++++++. .+..++. ++.||+|||||++||+++ +.+|++++|||||
T Consensus 84 -------------~~~-~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 -------------PLC-VLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred -------------cCC-HHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 011 1124567777776 4444444 568999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc---CCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 190 SGLDSTSAYSVIEKVHNIARS---GSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 190 sgLD~~~~~~i~~~l~~l~~~---g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
+|||...+..+.+.|++++++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 999999999999999998653 3699999999764 555 59999998754
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.3e-23 Score=214.98 Aligned_cols=182 Identities=17% Similarity=0.225 Sum_probs=121.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee--CCc--------ccccccEEEEccCCCC-CCCCCHH
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE--TSP--------SLIKRTSAYIMQEDRL-FPMLTVF 114 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~--~~~--------~~~~~~i~yv~Q~~~l-~~~lTv~ 114 (646)
..++ +++|+|||||||||||++|++...+.. |+++.++.+ +.. ....-.+.|..|++.. .-..++.
T Consensus 20 ~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~--~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 20 PFDR-FTCIIGPNGSGKSNLMDAISFVLGEKS--SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhCCCc--ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 3344 999999999999999999999886543 666544321 000 0111223444443221 1111111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccCC--------CCCCCChHHHHHHHHHHHHH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNT---------HIGDE--------GTRGVSGGERRRVSIGVDII 177 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSgGerqRv~ia~~L~ 177 (646)
+.. ...+..+ +...++.++++++.+|+...... .+.+. .+..||||||||++||++++
T Consensus 97 ~~~---~~~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 97 GGS---SSYRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred CCc---eEEEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 110 0011111 11123456788899998633211 11122 23789999999999999998
Q ss_pred hC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 178 HG----PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 178 ~~----P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
.+ |++++|||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 75 899999999999999999999999999987799999999995 35689999999875
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=9e-23 Score=213.95 Aligned_cols=173 Identities=26% Similarity=0.319 Sum_probs=139.0
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
|+-=.+++..||+++++||||-||||+.++|+|.++|++ |+ . ..-+++|=||--.--...||++.|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde--g~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE--GS----E-------EDLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC--CC----C-------ccceEeecceeecCCCCCcHHHHHH
Confidence 444456777889999999999999999999999999987 75 1 1234788888655445679999887
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAY 198 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~ 198 (646)
-...-+.. . .-...++++-|+|++..+..+. +|||||.|||+||.+|..++++.+||||++-||.+.+.
T Consensus 424 ~~~~~~~~-~-----s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 424 SAIRSAFG-S-----SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred Hhhhhhcc-c-----chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 54432111 1 1234567888899887777664 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 199 SVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 199 ~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
.+.+.+++... +++|.+++-||.. .+.-++||+++..
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 99999999986 5899999999975 4566789988764
No 392
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=3.6e-22 Score=189.98 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=165.1
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
.+..|+++++.|+|+.. -+++-|+|++++.|.-..++|.||||||||||+|+|..--.. |.|.++|+
T Consensus 10 ~~~aievsgl~f~y~~~-----------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~--~~v~Vlgr 76 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS-----------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGR 76 (291)
T ss_pred ccceEEEeccEEecccC-----------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC--CeEEEcCc
Confidence 34489999999999764 368999999999999999999999999999999999765555 99999997
Q ss_pred eCCc--------------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 039035 88 ETSP--------------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH 153 (646)
Q Consensus 88 ~~~~--------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 153 (646)
+.-. .++.+.+++-- +-.+...+++.+.| |+. .+... +|-+++++.|+++-.-
T Consensus 77 saFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV----~g~dp----~Rre~LI~iLDIdl~W--- 143 (291)
T KOG2355|consen 77 SAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGV----GGDDP----ERREKLIDILDIDLRW--- 143 (291)
T ss_pred CccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhc----cCCCh----hHhhhhhhheeccceE---
Confidence 6311 12333333333 22234456766544 332 12222 3456677777765221
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeE
Q 039035 154 IGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 154 vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v 232 (646)
..+.+|-||||||.|++.|++.-++|+|||-|-.||..++..+++.+++-++ +|.||+.+||--.. +.....++
T Consensus 144 ----RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl 218 (291)
T KOG2355|consen 144 ----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHL 218 (291)
T ss_pred ----EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhE
Confidence 1246999999999999999999999999999999999999999999999886 59999999998654 77889999
Q ss_pred EEEeCCeEEEEcChhhHHHH
Q 039035 233 IILARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 233 ~~L~~G~iv~~g~~~~~~~~ 252 (646)
+.++.|+++..-+.+++.++
T Consensus 219 ~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 219 VYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred EEecCCeeeeccccchhhhh
Confidence 99999999987666665543
No 393
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.87 E-value=1e-21 Score=211.64 Aligned_cols=203 Identities=20% Similarity=0.265 Sum_probs=157.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.+++++++..-+++ +..+.+|+|++|+.|+-+.|.||||||||+||++|+|+-+... |++.--.+.-.
T Consensus 433 ~i~~e~v~l~tPt~----------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~--G~l~k~~~~~~ 500 (659)
T KOG0060|consen 433 AIEFEEVSLSTPTN----------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG--GKLTKPTDGGP 500 (659)
T ss_pred eEEeeeeeecCCCC----------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC--CeEEecccCCC
Confidence 79999999877653 2468899999999999999999999999999999999987665 98875432211
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCCCCCCCCh
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH------IGDEGTRGVSG 164 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSg 164 (646)
+.+-||||.|.+.-. |.||.+.|...--. ...+....+++.+.|+.++|.|..+.. +--+.-..||+
T Consensus 501 -----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~-~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~ 573 (659)
T KOG0060|consen 501 -----KDLFFLPQRPYMTLG-TLRDQVIYPLKAED-MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSP 573 (659)
T ss_pred -----CceEEecCCCCcccc-chhheeeccCcccc-ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCH
Confidence 457899999986665 99999988632111 111112345677778877777654322 21223457999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
||+||++.||-+.++|++-+|||-||++|......+.+.+++ .|.|.|-+.|.++ +.+.-|.++-|+.
T Consensus 574 GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 574 GEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999999887775 4999999999975 5566688888875
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.9e-22 Score=205.88 Aligned_cols=198 Identities=25% Similarity=0.358 Sum_probs=157.4
Q ss_pred CCCCCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeE
Q 039035 2 PGKPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGK 81 (646)
Q Consensus 2 ~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 81 (646)
|+-|.-.|..|-++|++|.|++. ++++++++|-|.--.-+||+||||.||||||++|.|.+.|.. |+
T Consensus 577 Pep~~L~PPvLGlH~VtFgy~gq-----------kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~--GE 643 (807)
T KOG0066|consen 577 PEPTKLNPPVLGLHDVTFGYPGQ-----------KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND--GE 643 (807)
T ss_pred CCCCCCCCCeeecccccccCCCC-----------CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc--ch
Confidence 44455556689999999999764 478999999999999999999999999999999999999976 77
Q ss_pred EEECCeeCCcccccccEEEEccCC--CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 039035 82 VTLDGKETSPSLIKRTSAYIMQED--RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGT 159 (646)
Q Consensus 82 I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 159 (646)
.+-| .|-+||+-.|+. .|-..-|.-|+|.-... ++. +.+...|-.+||...++|.- +
T Consensus 644 ~RKn--------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN-----lpy----q~ARK~LG~fGL~sHAHTik----i 702 (807)
T KOG0066|consen 644 LRKN--------HRLRIGWFDQHANEALNGEETPVEYLQRKFN-----LPY----QEARKQLGTFGLASHAHTIK----I 702 (807)
T ss_pred hhcc--------ceeeeechhhhhHHhhccccCHHHHHHHhcC-----CCh----HHHHHHhhhhhhhhccceEe----e
Confidence 6533 234589888875 46666788887753222 232 34566788899988887753 5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+.|||||+-||++|.--+..|+||||||||++||..+...+.+.|++. +..||+++||-. .+.+---.++++.+
T Consensus 703 kdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 703 KDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred eecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEcc
Confidence 689999999999999999999999999999999999999999988876 468999999954 35554445666654
No 395
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.86 E-value=2.7e-23 Score=205.23 Aligned_cols=207 Identities=25% Similarity=0.459 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhh
Q 039035 375 SETWILMRRNFKNIRRTPELF-LSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIFFF-SSNDAVPAFIQER 452 (646)
Q Consensus 375 ~q~~~L~~R~~~~~~Rd~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~~~-~~~~~v~~~~~er 452 (646)
+|++.+++|+++..+|||... ...++..+++++++|.+|.+.+++.++. ++.+++++.+...++ ...+.......|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999988555555 677777776666654 4455558889999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 039035 453 FIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK-SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYI 531 (646)
Q Consensus 453 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~-~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~ 531 (646)
..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++. +++.+++++++..+++.++|.++++++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~ 159 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFR 159 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhh
Confidence 999999999999999999999999999999999999999999999987 4777888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhh
Q 039035 532 IGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQF 582 (646)
Q Consensus 532 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef 582 (646)
.+..+.+.+..++++++|.++|.+.+|.|++|+.|+||++|++|++..++|
T Consensus 160 ~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 160 DASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999886
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.4e-22 Score=210.17 Aligned_cols=202 Identities=22% Similarity=0.284 Sum_probs=144.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|...|.+..|+. +.+|++-++++..|.-++|+|+||+|||||||+|+. |+|.. -++.
T Consensus 80 Di~~~~fdLa~G~------------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v~~--f~ve 137 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG------------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQVSG--FHVE 137 (582)
T ss_pred ceeeeeeeeeecc------------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCcCc--cCch
Confidence 6888888888864 479999999999999999999999999999999997 22222 1221
Q ss_pred cccccccEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQE-DRLFPMLTVFETLMFAADFRLGPISWS-DKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. +.+ -.+++-. +.+....++.+.+.--.. +... +..+...++|..+|.++... ...++.||||=|-
T Consensus 138 q-E~~--g~~t~~~~~~l~~D~~~~dfl~~e~~-----l~~~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrM 205 (582)
T KOG0062|consen 138 Q-EVR--GDDTEALQSVLESDTERLDFLAEEKE-----LLAGLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRM 205 (582)
T ss_pred h-hee--ccchHHHhhhhhccHHHHHHHHhhhh-----hhccchHHHHHHHHHHhCCCCHHHH----hccccccCcchhh
Confidence 1 111 1123222 123333333333221111 1111 33444555899999975432 2345789999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE-EEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL-MFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i-v~~g~~~ 247 (646)
|+++||||..+|++|+|||||+.||..+..-+.+.|..+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|+.+
T Consensus 206 rlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 206 RLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred HHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 999999999999999999999999999999999988876 4899999999 6678889999998887666 3667666
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
+..
T Consensus 282 ~Fv 284 (582)
T KOG0062|consen 282 QFV 284 (582)
T ss_pred HHH
Confidence 554
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.3e-21 Score=204.40 Aligned_cols=205 Identities=23% Similarity=0.300 Sum_probs=163.0
Q ss_pred CCCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEE
Q 039035 4 KPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVT 83 (646)
Q Consensus 4 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~ 83 (646)
..+..+..+++.++++.|+.+. -+++.+++..++.-+-.+++|+||+||||++|++.|-..|.+ |-+-
T Consensus 355 ~e~~~~p~l~i~~V~f~y~p~~----------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r--gi~~ 422 (582)
T KOG0062|consen 355 GEVLSPPNLRISYVAFEYTPSE----------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR--GIVG 422 (582)
T ss_pred CCcCCCCeeEEEeeeccCCCcc----------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc--ceee
Confidence 4455566899999998886431 168999999999999999999999999999999999888876 8776
Q ss_pred ECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 84 LDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 84 ~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
+++ |.+++|-.|+..=+-.+.|-+- .+...++ ++.+ ++.++.-+..+||+.. +......+||
T Consensus 423 ~~~--------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG~~----~ee~r~hl~~~Gl~g~----la~~si~~LS 484 (582)
T KOG0062|consen 423 RHP--------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PGKT----EEEIRRHLGSFGLSGE----LALQSIASLS 484 (582)
T ss_pred ecc--------cceecchhHhhhhHHHHHhHHH-HHHHHhC-CCCC----HHHHHHHHHhcCCCch----hhhccccccC
Confidence 653 5678999997654444455443 2333332 3333 4567778899999743 2223356899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+++|+ .+.+..+|+.+++.++|++.-
T Consensus 485 GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 485 GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999998888776 5689999999 567999999999999999864
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=9.1e-21 Score=189.29 Aligned_cols=171 Identities=18% Similarity=0.268 Sum_probs=111.1
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------cceeEEE--ECCeeCCcccccccEE
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-----------------SLKGKVT--LDGKETSPSLIKRTSA 99 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-----------------~~~G~I~--~~g~~~~~~~~~~~i~ 99 (646)
++++.+.+.+| +.+|+|||||||||||++|.-.+... ..++.|. +++.+. ...++..+-
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~-~~~~~n~~~ 91 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG-NIQVDNLCQ 91 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC-ccccCCceE
Confidence 46677777776 88999999999999999987543111 0012121 111100 011223233
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--
Q 039035 100 YIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI-- 176 (646)
Q Consensus 100 yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L-- 176 (646)
+++|+.. -+..+++.|.+ ..++- +..+.+..+.+||||||||+.++.++
T Consensus 92 ~~~q~~~~~~~~~~~~e~l------------------------~~~~~----~~~~~~~~~~~LS~G~~q~~~i~~~la~ 143 (213)
T cd03277 92 FLPQDRVGEFAKLSPIELL------------------------VKFRE----GEQLQELDPHHQSGGERSVSTMLYLLSL 143 (213)
T ss_pred EEchHHHHHHHhCChHhHh------------------------eeeec----CCCccccchhhccccHHHHHHHHHHHHH
Confidence 5555432 23344444333 11110 00111233568999999998877554
Q ss_pred --HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEecCCcHHHHhhcC--eEEEEeCCeE
Q 039035 177 --IHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-G-STVILTIHQPSSRIQLLLD--HLIILARGQL 240 (646)
Q Consensus 177 --~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tii~~~H~~~~~i~~~~D--~v~~L~~G~i 240 (646)
+.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+| ++++|++|+-
T Consensus 144 ~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~~ 212 (213)
T cd03277 144 QELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGPH 212 (213)
T ss_pred HhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCcc
Confidence 5899999999999999999999999999999876 5 589999999654 456666 7888988863
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=7.1e-21 Score=188.49 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=110.2
Q ss_pred cccceeEEEeCC-eEEEEECCCCCcHHHHHHHHH--------cCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCC
Q 039035 38 LLNKITGDAPKG-CITAVMGPSGAGKSTLLDGLA--------GRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLF 108 (646)
Q Consensus 38 iL~~vs~~i~~G-e~~aI~GpsGaGKSTLL~~L~--------G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 108 (646)
-..++|+++.+| ++++|.|||||||||||++|+ |...|.. . ...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~--~--------------~~~~~~~~~~~~~- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA--E--------------GSSLPVFENIFAD- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc--c--------------cccCcCccEEEEe-
Confidence 345799999999 489999999999999999998 3322211 0 0123343332110
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 039035 109 PMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP 188 (646)
Q Consensus 109 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP 188 (646)
++..+..+.. ...+|+||||++.++++ +.+|+++++|||
T Consensus 79 -----------------------------------lg~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDEp 117 (200)
T cd03280 79 -----------------------------------IGDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDEL 117 (200)
T ss_pred -----------------------------------cCchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcCC
Confidence 0111111111 23699999999999987 589999999999
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 189 TSGLDSTSAYSVI-EKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 189 tsgLD~~~~~~i~-~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
++|||+..+..+. ..++++.+.|.++|++||+. ++.+++|+++.|.+|++++++
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999999996 47888887799999999983 467899999999999998874
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=2.6e-20 Score=195.62 Aligned_cols=172 Identities=27% Similarity=0.463 Sum_probs=127.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE-----------EECCeeCCc-------cccc--ccEEEEccCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV-----------TLDGKETSP-------SLIK--RTSAYIMQED 105 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~g~~~~~-------~~~~--~~i~yv~Q~~ 105 (646)
.++|++++|+||||-||||-+|+|+|.+.|.- |+- .+.|.++.. ..+| .+.-||.--+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNL--G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNL--GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCC--CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 57999999999999999999999999998864 331 111111100 0000 1111222112
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 039035 106 RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFL 185 (646)
Q Consensus 106 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllL 185 (646)
..+-. ||.|-|.-. +.+.+.+++++.++|++..|+.+ ++|||||-||++||.+++.+.+++++
T Consensus 175 k~~KG-~v~elLk~~-----------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 175 KVVKG-KVGELLKKV-----------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHhcc-hHHHHHHhh-----------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEEE
Confidence 22222 566554311 11236789999999998888776 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 186 DEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 186 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|||||-||...+....+.+++|++.+++||++.||.. .+.-++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 9999999999999999999999998999999999964 45567888888764
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=187.46 Aligned_cols=207 Identities=29% Similarity=0.388 Sum_probs=152.5
Q ss_pred eEEEEeEEEEEecccccc--------------ccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---
Q 039035 11 GLGFSNLTYTVTKKKKIE--------------GTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--- 73 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~--------------~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--- 73 (646)
.+.++|+++.+.+..... -.-+.....+|+|+|++++||++++|.|+|||||||||++|.|..
T Consensus 357 p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~ 436 (593)
T COG2401 357 PIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR 436 (593)
T ss_pred ccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcc
Confidence 477788888775422111 011234567999999999999999999999999999999999863
Q ss_pred -----CCCcceeEEEECCeeCCcccccccEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC
Q 039035 74 -----ASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDR-LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT 147 (646)
Q Consensus 74 -----~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 147 (646)
+|++ |.|.+--.. ..+.+|-+.. -+..-|+.|++.- ..+ .-....++|++.||.
T Consensus 437 ~ee~y~p~s--g~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s----~tG------D~~~AveILnraGls 496 (593)
T COG2401 437 GEEKYRPDS--GKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRS----KTG------DLNAAVEILNRAGLS 496 (593)
T ss_pred cccccCCCC--Cceeccccc--------hhhccCcccccccCchhHHHHHhh----ccC------chhHHHHHHHhhccc
Confidence 3444 777653211 2344554432 2445577776531 111 112457899999997
Q ss_pred ccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHH
Q 039035 148 TTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQ 226 (646)
Q Consensus 148 ~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~ 226 (646)
+. ..-....++||-|||.|+.||.++..+|.+++.||-.+.||+.++..+.+-|.+++++ |.|++++||.|+ .+.
T Consensus 497 DA---vlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~ 572 (593)
T COG2401 497 DA---VLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGN 572 (593)
T ss_pred hh---hhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHh
Confidence 53 2222345789999999999999999999999999999999999999999999999974 999999999985 456
Q ss_pred hh-cCeEEEEeCCeEE
Q 039035 227 LL-LDHLIILARGQLM 241 (646)
Q Consensus 227 ~~-~D~v~~L~~G~iv 241 (646)
.+ -|+++++.-|...
T Consensus 573 AL~PD~li~vgYg~v~ 588 (593)
T COG2401 573 ALRPDTLILVGYGKVP 588 (593)
T ss_pred ccCCceeEEeeccccc
Confidence 66 6888888777654
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=5.7e-20 Score=181.60 Aligned_cols=135 Identities=18% Similarity=0.283 Sum_probs=103.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.++... .+++|.+.+++.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchh
Confidence 45788887765 79999999999999999999998542 11234433211 36678778999999999
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST 195 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~ 195 (646)
++.++... ...+ .+++.++++.+++ .+|+++++|||++|+|+.
T Consensus 79 ~l~~~~s~-----~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISY-----FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccCh-----HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHH
Confidence 99774321 1222 3567788877652 689999999999999999
Q ss_pred HHHHHH-HHHHHHHHcCCEEEEEecCCc
Q 039035 196 SAYSVI-EKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 196 ~~~~i~-~~l~~l~~~g~tii~~~H~~~ 222 (646)
.+..+. .+++++.+.|.|+|++||++.
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 998875 478888878999999999975
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=5.7e-19 Score=171.43 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 162 VSGGERRRVSIGVDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 162 LSgGerqRv~ia~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999974 4568999999875
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.1e-18 Score=181.50 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 161 GVSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
.|||||+||+++|++++. +|+++++||||+|||+.....+.+.|+++.+ +.|+|++||++. +.+.+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999987654 9999999999999999999999999999865 789999999975 457999999998
Q ss_pred CCe
Q 039035 237 RGQ 239 (646)
Q Consensus 237 ~G~ 239 (646)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=2.5e-19 Score=179.97 Aligned_cols=152 Identities=17% Similarity=0.187 Sum_probs=115.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEE-EEccCCCCCCCCCHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSA-YIMQEDRLFPMLTVF 114 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~ 114 (646)
..+.+|++++.++|++++|.||||+||||||+.++-. .+..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe-----
Confidence 4689999999999999999999999999999999821 1112233 5555432111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---C
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI--IHGPPLLFLDEP---T 189 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~P~lllLDEP---t 189 (646)
.++++++.+|+.+.. .+++|.|+++++.+++++ +.+|+++||||| |
T Consensus 72 ---------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 72 ---------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred ---------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 123445556665322 247999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 190 SGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 190 sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
++||+...... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...+.
T Consensus 123 ~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999888543 3355554 48999999997 35789999999999999987764
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=7.8e-18 Score=206.10 Aligned_cols=202 Identities=22% Similarity=0.336 Sum_probs=145.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHH-HHc----CCCC--CcceeEEEECCeeCCc-------------cccc
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDG-LAG----RIAS--GSLKGKVTLDGKETSP-------------SLIK 95 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~-L~G----~~~~--~~~~G~I~~~g~~~~~-------------~~~~ 95 (646)
..=|+||+.+|+-|.+++|-|.||||||||++- |.. .+.. ..+.--|.++..|+.. ..+|
T Consensus 1503 ~nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1503 IHTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred cccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 346999999999999999999999999999964 421 1100 1122346666655421 0001
Q ss_pred c-------------------------------cEEEEccCCCCC--------------------------------CCCC
Q 039035 96 R-------------------------------TSAYIMQEDRLF--------------------------------PMLT 112 (646)
Q Consensus 96 ~-------------------------------~i~yv~Q~~~l~--------------------------------~~lT 112 (646)
+ .-|++.=+..++ -.||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 0 012221111111 2367
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCC
Q 039035 113 VFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHG---PPLLFLDEPT 189 (646)
Q Consensus 113 v~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~---P~lllLDEPt 189 (646)
|.|.+.|... ..+-.+.-+.|+.+||... .+| +...+|||||.||+-||.+|..+ +.+++|||||
T Consensus 1663 v~ea~~~F~~--------~~~i~~~L~~L~~vGLgYl---~LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1663 IEEVAETFPF--------LKKIQKPLQALIDNGLGYL---PLG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHHhhc--------cHHHHHHHHHHHHcCCCee---eCC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 7777776532 1123456778889999743 233 34567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe------CCeEEEEcChhhHHH
Q 039035 190 SGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA------RGQLMFQGPPKEVTL 251 (646)
Q Consensus 190 sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~------~G~iv~~g~~~~~~~ 251 (646)
+||++.....+++.|++|.+.|.|||++.|++. +.+.+|.|+=|- .|+||+.|+|+++..
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999964 556799999983 479999999999864
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=7.1e-18 Score=188.19 Aligned_cols=128 Identities=30% Similarity=0.467 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCC---CEEEEe
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP---PLLFLD 186 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P---~lllLD 186 (646)
.|||.|...|.... + .-.+.-+.|..+||.-. ++| +..-+|||||.|||-+|.+|.... .+.+||
T Consensus 783 ~MTveEA~~FF~~~-----p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI-----P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc-----h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 36777777776532 1 12345567778898632 344 345689999999999999999877 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
|||+||-.....++++.|.+|.++|-|||++.|+.. +.+.+|.|+=| ..|+||+.|.|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999964 66789999998 4589999999999875
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.77 E-value=1.9e-18 Score=165.41 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 161 GVSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 399999999999999987 78999999999999999999999999998766899999999974 456799999986
Q ss_pred C
Q 039035 237 R 237 (646)
Q Consensus 237 ~ 237 (646)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.77 E-value=1.3e-18 Score=185.23 Aligned_cols=184 Identities=23% Similarity=0.327 Sum_probs=134.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|.++|+-.-.+. ...++..++|.+++|-.+.|.||||||||+|.++|+|+-+-.. |...+
T Consensus 481 gI~lenIpvItP~-----------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~--g~L~~------ 541 (728)
T KOG0064|consen 481 GIILENIPVITPA-----------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN--GLLSI------ 541 (728)
T ss_pred ceEEecCceeccC-----------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC--Ceeec------
Confidence 3666666544332 3458899999999999999999999999999999999986522 44332
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHHHcCCCccccccccC----CCCCCCC
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD---FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGD----EGTRGVS 163 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~---~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LS 163 (646)
+ ...++-|+||.|.+- .-|.+|.+-|... ++..+.+ ++..+.+|+.+.|++.+....|= +...-||
T Consensus 542 P--~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~Ls 614 (728)
T KOG0064|consen 542 P--RPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLS 614 (728)
T ss_pred C--CCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhcc
Confidence 1 124489999998765 3377777765321 1111222 23456667777666554433321 2234699
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
||||||+.+||.+-++|+.-+|||-||+........+.+..++ .|.+.+-+||+|+.
T Consensus 615 gGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 615 GGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred chHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 9999999999999999999999999999998888888876554 49999999999974
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=2.4e-17 Score=194.16 Aligned_cols=135 Identities=25% Similarity=0.450 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHHccCCCCC-------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhC
Q 039035 108 FPMLTVFETLMFAADFRLGPIS-------WSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHG 179 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~-------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 179 (646)
+..+||.|.+.|.-.+...... .++..++++ .++.+||.+. .|+.+ .+|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 4568999999985544321100 013345554 6888898754 55554 57999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 180 P--PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 180 P--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
| ++++|||||+|||+..+..+.+.|++++++|.|||+++|++. ++. .+|++++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999988999999999976 454 69999999 999999999998874
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=1.9e-17 Score=164.30 Aligned_cols=155 Identities=11% Similarity=0.112 Sum_probs=105.3
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-SGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMF 119 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 119 (646)
..++++.+|++++|.|||||||||||++|++..- ... |... . ..+..++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~--g~~~------~--~~~~~i~~~dqi---~~~~~~~d~--- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQI--GCFV------P--AESASIPLVDRI---FTRIGAEDS--- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHc--CCCc------c--ccccccCCcCEE---EEEecCccc---
Confidence 3456666899999999999999999999995431 111 2111 0 011223333221 111111111
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 039035 120 AADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYS 199 (646)
Q Consensus 120 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~ 199 (646)
.+.. .+.++++++| ++.+.+++.+|+++++||||+|||+.....
T Consensus 85 ------------------------------i~~~-----~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 85 ------------------------------ISDG-----RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred ------------------------------ccCC-----ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 0011 1246666554 777778899999999999999999999988
Q ss_pred HHH-HHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 200 VIE-KVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 200 i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+.. +++.+.+.+.++|++||++ ++.+.+|++..+..|++...++..+.
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 765 5677777799999999985 45678999999999999988865443
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=8.1e-17 Score=189.45 Aligned_cols=135 Identities=27% Similarity=0.423 Sum_probs=106.7
Q ss_pred CCCCCHHHHHHHHHHccCCCCCH-------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhC
Q 039035 108 FPMLTVFETLMFAADFRLGPISW-------SDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHG 179 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~-------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 179 (646)
+-.|||.|.+.|...+....... ++..+++ +.+..+||... .++ .+.+|||||+|||.||++|+.+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhC
Confidence 34689999998876653221000 1122222 23666787643 343 4568999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 180 P--PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 180 P--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
| +++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999999975 45 489999999 899999999998874
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.9e-16 Score=164.06 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 159 TRGVSGGERRRVSIGVDII---------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~---------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
..-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.++++. . +++++|+.. .+.+++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccchh
Confidence 3458999999999999985 7999999999999999999999999998753 3 455555533 356666
Q ss_pred ---CeEEEEeCCeE
Q 039035 230 ---DHLIILARGQL 240 (646)
Q Consensus 230 ---D~v~~L~~G~i 240 (646)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 67999999985
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=7.2e-17 Score=159.95 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=99.6
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
+..+.+|+++++++|++++|+||||+|||||++++++..-- + +.-.|| +...+.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l----a---------------~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM----A---------------QIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH----H---------------HcCCCc---chhhcCccCh
Confidence 35689999999999999999999999999999999886411 0 111133 3334556666
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
|++... ++..+..+.. .+.+|+|++|+ +.+.+++++|++++||||++|+|+
T Consensus 73 d~I~~~-----------------------~~~~d~~~~~-----~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 73 NRLLSR-----------------------LSNDDSMERN-----LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hheeEe-----------------------cCCccccchh-----hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 666321 1222111111 24689999865 566778899999999999999999
Q ss_pred HHHHHHH-HHHHHHHHcCCEEEEEecCCc
Q 039035 195 TSAYSVI-EKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 195 ~~~~~i~-~~l~~l~~~g~tii~~~H~~~ 222 (646)
.....+. ..++.+.+.|.++|++||+..
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 8776654 567778878999999999853
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.8e-17 Score=172.82 Aligned_cols=212 Identities=24% Similarity=0.301 Sum_probs=150.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---CCCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI---ASGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~---~~~~~~G~I~~~g~ 87 (646)
.|.++|.+.+-. ++.++.|.|+.|-.|.-++++||||-||||||+-|+.+- +|. =+|++..+
T Consensus 264 DIKiEnF~ISA~------------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---IDvLlCEQ 328 (807)
T KOG0066|consen 264 DIKIENFDISAQ------------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---IDVLLCEQ 328 (807)
T ss_pred cceeeeeeeecc------------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---CceEeeee
Confidence 566776665543 356899999999999999999999999999999999873 333 24444444
Q ss_pred eCCc-------ccc---cccEEEEccCC-----CCCCCCCHHHHHHHH-HHccCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 039035 88 ETSP-------SLI---KRTSAYIMQED-----RLFPMLTVFETLMFA-ADFRLGPISWSDKKQRVENLVDQLGLTTTRN 151 (646)
Q Consensus 88 ~~~~-------~~~---~~~i~yv~Q~~-----~l~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 151 (646)
++-. ..+ .++...+..++ .--...|+.|-+.-. ..+|.-+ ....+.++..+|.-||.+...
T Consensus 329 Evvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG--A~sAEarARRILAGLGFskEM- 405 (807)
T KOG0066|consen 329 EVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG--ADSAEARARRILAGLGFSKEM- 405 (807)
T ss_pred eeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc--cccchhHHHHHHhhcCCChhH-
Confidence 3210 000 11112221111 112345777776532 3344222 223346778899999987432
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCe
Q 039035 152 THIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 152 ~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 231 (646)
-+++...+|||=|-||++||||...|-+|.|||||+.||..+..-+-+.|+.+. +|.++++||.. .+...|..
T Consensus 406 ---Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtd 478 (807)
T KOG0066|consen 406 ---QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTD 478 (807)
T ss_pred ---hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHH
Confidence 233445799999999999999999999999999999999999888888888875 59999999965 68899999
Q ss_pred EEEEeCCeEEE-EcChh
Q 039035 232 LIILARGQLMF-QGPPK 247 (646)
Q Consensus 232 v~~L~~G~iv~-~g~~~ 247 (646)
|+-|++-++.| .|...
T Consensus 479 IIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 479 IIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HhhhhhhhhhhhcchHH
Confidence 99999888764 45543
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=7.7e-16 Score=154.14 Aligned_cols=157 Identities=20% Similarity=0.146 Sum_probs=108.7
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
+.+.+|++++.++ ++++|.||||+|||||||++++..-. |+ .|..+.. .+..++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc--ccceecceee---EeccCCchh
Confidence 4589999999988 99999999999999999999875422 21 1222221 1345677754 567777777
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh--HHHHHHHHHHHHHhCCCEEEEeCC---CC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG--GERRRVSIGVDIIHGPPLLFLDEP---TS 190 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~ia~~L~~~P~lllLDEP---ts 190 (646)
++..+ .|. .|+++++-+...+.+|++++|||| |+
T Consensus 85 ~ls~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 85 DLAGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hhccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 66432 111 122333333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 191 GLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 191 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
++|.... ...+++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 8887542 23455556665 89999999995 577889998888889988877666553
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=1e-15 Score=157.57 Aligned_cols=140 Identities=23% Similarity=0.293 Sum_probs=98.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----ccccccEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL 125 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 125 (646)
.-++|+||||||||||+++|+|.+.+++ |+|.++|+++.. .++.+.+++++|++ +.+.++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~--G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI--SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC--ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 5789999999999999999999999987 999999998742 23445677888865 3445565554210
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 039035 126 GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH 205 (646)
Q Consensus 126 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~ 205 (646)
. + | ........+|+++++|||++ ...+..+++
T Consensus 183 -----~------~--------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~ 214 (270)
T TIGR02858 183 -----A------E--------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLE 214 (270)
T ss_pred -----H------H--------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence 0 0 0 01222336999999999974 233444445
Q ss_pred HHHHcCCEEEEEecCCcHH-H-----------HhhcCeEEEEeCCeEEEEcChhhH
Q 039035 206 NIARSGSTVILTIHQPSSR-I-----------QLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 206 ~l~~~g~tii~~~H~~~~~-i-----------~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
.+ ++|.++|+++|+++.+ + ..+|||+++|++|+ ..|.++++
T Consensus 215 ~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 215 AL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 44 4699999999986431 2 26789999999887 56666554
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=151.93 Aligned_cols=178 Identities=22% Similarity=0.287 Sum_probs=135.7
Q ss_pred cccccccceeEEEeCCe-----EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCC
Q 039035 34 EEVDLLNKITGDAPKGC-----ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLF 108 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge-----~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~ 108 (646)
+.+.-+-+..+.|+.|| ++..+|.||.||||++++++|+++|+. .|+|-. -.++|=||...--
T Consensus 347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~-~~e~p~-----------lnVSykpqkispK 414 (592)
T KOG0063|consen 347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE-GGEIPV-----------LNVSYKPQKISPK 414 (592)
T ss_pred cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc-cCcccc-----------cceeccccccCcc
Confidence 44556778888888774 789999999999999999999999875 233321 2367777765544
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 039035 109 PMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP 188 (646)
Q Consensus 109 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP 188 (646)
..-||++.+.--. |. .-...+-+.++++-|.+++..|..+ .+|||||+|||++|..|-..+++.+.|||
T Consensus 415 ~~~tvR~ll~~kI--r~----ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 415 REGTVRQLLHTKI--RD----AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred ccchHHHHHHHHh--Hh----hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 4558988775321 11 1112345778888888887766655 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 189 TSGLDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 189 tsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
.+-||++.+..--+.+++.- +.++|-.++.||.--+. -++||+++.
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf 530 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVF 530 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEE
Confidence 99999999999999998864 66899999999954322 378887754
No 419
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=1.1e-12 Score=133.27 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=160.3
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHHH----HHHHHHHHHHHHHHHHhhHHHHHHHhhH-H
Q 039035 383 RNFKNIRRTPELFLSRLMVLTVMGFMMATMFANP-KKD--SQGITN----RLCFFVFTVCIFFFSSNDAVPAFIQERF-I 454 (646)
Q Consensus 383 R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~--~~~~~~----~~g~~ff~~~~~~~~~~~~v~~~~~er~-v 454 (646)
|.++...|||..+..-+++-+++.+++|.++-+. +.. ..+... ..|.+.+++.... ..... ....||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~--~~~~~-~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMS--FFSGI-SVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHH--HHhhh-HHHHHHHhC
Confidence 6778889999999999999999999999887542 111 111111 1122222111111 11122 2222332 2
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q 039035 455 FIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK-SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIG 533 (646)
Q Consensus 455 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~-~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a 533 (646)
+.++....-.+...|+++|.+.+++..++..+++..+.+++.+.+. .++.+++..++..++..++|.++++.+++.+.+
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~ 157 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGF 157 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2333333344788999999999999999999999999998877664 445555556666777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcCCcccCC
Q 039035 534 YAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALHIKTEGW 613 (646)
Q Consensus 534 ~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~ 613 (646)
+.+.+.+..++..+||.+.|.+.+|.|++|+.+++|++|+.|++-..-.+ ..+ ..
T Consensus 158 ~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~-~~~------------------------~~ 212 (236)
T TIGR01247 158 QIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG-VSP------------------------TF 212 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC-CCc------------------------cc
Confidence 99999999999999999999999999999999999999999986654332 110 12
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 039035 614 GKWEKVFILLGWAVFYRILFYI 635 (646)
Q Consensus 614 ~~w~~~~il~~~~~~~~~~~~~ 635 (646)
+.|.++++++++.+++..++..
T Consensus 213 ~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 213 PLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999988888776643
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.51 E-value=4.5e-13 Score=144.40 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=65.8
Q ss_pred CCCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 159 TRGVSGGERRRVSIGVDII---------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~---------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
...+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4679999999999999885 799999999999999999999999988764 458899999864 344553
Q ss_pred --CeEEEEeCCeE
Q 039035 230 --DHLIILARGQL 240 (646)
Q Consensus 230 --D~v~~L~~G~i 240 (646)
++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999986
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.51 E-value=1.8e-14 Score=140.89 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVI-EKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++ +.++|++||++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 468888776433333 34599999999999999999888875 556777764 89999999996 46778876444444
Q ss_pred CeEEEE
Q 039035 238 GQLMFQ 243 (646)
Q Consensus 238 G~iv~~ 243 (646)
++....
T Consensus 137 ~~~~~~ 142 (185)
T smart00534 137 LHMSAD 142 (185)
T ss_pred EEEEEE
Confidence 444433
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.48 E-value=1.7e-14 Score=144.78 Aligned_cols=88 Identities=26% Similarity=0.466 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 039035 135 QRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210 (646)
Q Consensus 135 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 210 (646)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 455666666666432 59999999999997664 46689999999999999999999999999875
Q ss_pred CCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 211 GSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 211 g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+.-+|++||++ .+++.+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 4788899877654
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=3.8e-13 Score=134.44 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=87.0
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCcceeEEEECCeeCCcccccccEEEEccCCCCC-CCCCHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLF-PMLTVF 114 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~-~~lTv~ 114 (646)
+=+|+++.=..+..++|.||||+|||||||.++. .+ +.. |...... .-.++|..|....+ ...++.
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~--G~~v~a~--------~~~~~~~d~i~~~l~~~~si~ 86 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHI--GSFVPAD--------SATIGLVDKIFTRMSSRESVS 86 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhC--CCeeEcC--------CcEEeeeeeeeeeeCCccChh
Confidence 4455554322237999999999999999999984 23 222 5443321 12366776643211 111211
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS--GGERRRVSIGVDIIHGPPLLFLDEPTSGL 192 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~~L~~~P~lllLDEPtsgL 192 (646)
+ ++| .-|.||++++++++.+|+++++|||++|+
T Consensus 87 ~---------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 87 S---------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred h---------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 1 122 34669999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHc---CCEEEEEecCCc
Q 039035 193 DSTSAYSV-IEKVHNIARS---GSTVILTIHQPS 222 (646)
Q Consensus 193 D~~~~~~i-~~~l~~l~~~---g~tii~~~H~~~ 222 (646)
|+.....+ ...++++.+. +.++|++||++.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99865555 5688888764 358999999964
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=1.3e-13 Score=121.33 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=61.4
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lT 112 (646)
+.+|+++++++++||+++|+||||||||||++++. + |++.++|.++.. ...++.++|++|+ ++. -|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~--G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------K--RKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------C--CeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 36899999999999999999999999999999986 3 999999998742 3455667888877 444 48
Q ss_pred HHHHHHH
Q 039035 113 VFETLMF 119 (646)
Q Consensus 113 v~e~l~~ 119 (646)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
No 425
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.42 E-value=7.6e-11 Score=121.13 Aligned_cols=233 Identities=12% Similarity=0.088 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH--HHHH-hhHH-HHHHH-
Q 039035 377 TWILMRRNFKNIRRT-PELFLSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIF--FFSS-NDAV-PAFIQ- 450 (646)
Q Consensus 377 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~--~~~~-~~~v-~~~~~- 450 (646)
...+.+|+++..+|+ |..+...+++.+++-+++|..|-....+..+ .+...++.-.+..+ ++++ .+.. ..+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAAFLAAGMVATSAMTASTFETIYATFARM 85 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456679999999999 9999999999999988888887543121112 12211111111111 1111 1111 11222
Q ss_pred -hhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039035 451 -ERFIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK--SFLYFLVVLYVSLLSTNSFVVFVSSVV 527 (646)
Q Consensus 451 -er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~--~f~~f~~~~~l~~~~~~s~~~~is~~~ 527 (646)
|+..+.|-+..- -++..++++|++.+.-..++..++...+.+++ |..+ ..+..+.++++..++..++|.+++++.
T Consensus 86 r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~ 163 (253)
T TIGR01291 86 RVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAALA 163 (253)
T ss_pred HHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333332222 27889999999999877777776665555443 3332 344444555666777779999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcC
Q 039035 528 PNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALH 607 (646)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~ 607 (646)
++.+.+..+...+..+++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-..-+++.
T Consensus 164 ~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~---------------------- 221 (253)
T TIGR01291 164 PSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP---------------------- 221 (253)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------------
Confidence 9999999898999999999999999999999999999999999999998655533211
Q ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 039035 608 IKTEGWGKWEKVFILLGWAVFYRILFYIILR 638 (646)
Q Consensus 608 ~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~ 638 (646)
..+.|.++++++++.+++..++....|
T Consensus 222 ----~~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 222 ----GTQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113456788888888877776665544
No 426
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.42 E-value=5.1e-11 Score=120.75 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=144.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhhH--HHHHHhcCCCCC
Q 039035 389 RRTPELFLSRLMVLTVMGFMMATMFANPKKDSQGITN-RLCFFVFTVCIFFFSSNDAVPAFIQERF--IFIRETSHNAYR 465 (646)
Q Consensus 389 ~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~-~~g~~ff~~~~~~~~~~~~v~~~~~er~--v~~rE~~~~~Y~ 465 (646)
+|||..+..-+.+.+++-++.+.+|-+.. +....+. ..+.+-+ ....++....-.....||. .+.|=+.. =.+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~er~~G~l~rl~~~-P~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMAL--AAISTAFTGQAIAVARDRRYGALKRLGAT-PLP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHH--HHHHHHHHHHHHHHHHHHHhCHHHHHhcC-CCc
Confidence 69999999999988888788887776521 1111211 1121111 1111222222233344443 44444333 348
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch--HHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 039035 466 ASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK--SFLYFLVVLYVSLLSTNSFVVFVSSVVP---NYIIGYAAVIAF 540 (646)
Q Consensus 466 ~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~--~f~~f~~~~~l~~~~~~s~~~~is~~~~---~~~~a~~~~~~~ 540 (646)
+..|+++|++..++..+++.+++. ++++..|++. ..+..++.+.+....+.+++.+++++++ +.+.+..+....
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 156 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 899999999988888877765555 5566778774 3344445555556666777777777764 445557788888
Q ss_pred HHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcCCcccCCChHHHHH
Q 039035 541 TALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALHIKTEGWGKWEKVF 620 (646)
Q Consensus 541 ~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~w~~~~ 620 (646)
.++++++||.++|.+.+|.|++|+.+++|++|+.+++-..-..+.. ....|.+++
T Consensus 157 ~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~-------------------------~~~~~~~~~ 211 (232)
T TIGR00025 157 WFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVD-------------------------TFGAVRDLV 211 (232)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCC-------------------------hhhHHHHHH
Confidence 8999999999999999999999999999999999987554332110 124577888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039035 621 ILLGWAVFYRILFYIILR 638 (646)
Q Consensus 621 il~~~~~~~~~~~~~~L~ 638 (646)
+++++.+++..++....|
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888877766655543
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.42 E-value=5.4e-12 Score=125.53 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=122.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 039035 464 YRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK-SFLYFLVVLYVSLLSTNSFVVFVSSVVPNYIIGYAAVIAFTA 542 (646)
Q Consensus 464 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~-~f~~f~~~~~l~~~~~~s~~~~is~~~~~~~~a~~~~~~~~~ 542 (646)
-+...++++|.+..++..+++++++..+.|++.|++. +++.+++++++..++..+++.++++++++...+ +....+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~~ 134 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLLV 134 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHHH
Confidence 3556789999999999999999999999999999975 677778888888899999999999999876544 3444456
Q ss_pred HHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcCCcccCCChHHHHHHH
Q 039035 543 LFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALHIKTEGWGKWEKVFIL 622 (646)
Q Consensus 543 ~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~~~~~~~~~w~~~~il 622 (646)
+.++++|.+.|.+.+|.|++|+.+++|++|+.+++-.+.+.+. ....|.+++++
T Consensus 135 ~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~--------------------------~~~~~~~~~~L 188 (208)
T TIGR03062 135 LQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN--------------------------DGTLWQAVAVL 188 (208)
T ss_pred HHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc--------------------------HHHHHHHHHHH
Confidence 6777899999999999999999999999999999977766421 12467889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 039035 623 LGWAVFYRILFYIILR 638 (646)
Q Consensus 623 ~~~~~~~~~~~~~~L~ 638 (646)
+++.+++.++++...|
T Consensus 189 ~~~~~v~~~la~~~~~ 204 (208)
T TIGR03062 189 LLILVVFLALSLLSAR 204 (208)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999888887777655
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.5e-12 Score=130.53 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=87.8
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR-IASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~-~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
..+.+|+++.+++|++++|.||||+||||+|+++++. +.+.. |...... .. .++|..|- +..+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~--G~~v~a~-~~-------~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI--GSFVPAS-SA-------TLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC--CCEEEcC-ce-------EEeccceE---EEEecCc
Confidence 4689999999999999999999999999999999994 44433 6544321 11 12222221 1111111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS--GGERRRVSIGVDIIHGPPLLFLDEPTSGL 192 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~~L~~~P~lllLDEPtsgL 192 (646)
|++. .++| ..|-+|++-...-+++|+++|+|||.+|.
T Consensus 85 d~~~-----------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 85 DSIQ-----------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cccc-----------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 1110 0111 12334444444455689999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHc-CCEEEEEecCCc
Q 039035 193 DSTSAYSV-IEKVHNIARS-GSTVILTIHQPS 222 (646)
Q Consensus 193 D~~~~~~i-~~~l~~l~~~-g~tii~~~H~~~ 222 (646)
|+.....+ ..+++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 98777775 5677788776 899999999964
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=5.7e-13 Score=155.55 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=90.8
Q ss_pred eeEEEeCC-eEEEEECCCCCcHHHHHHHHHcC-CCCCcceeEEEECCeeCCcccccccEEEEccCCC-CCCCCCHHHHHH
Q 039035 42 ITGDAPKG-CITAVMGPSGAGKSTLLDGLAGR-IASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDR-LFPMLTVFETLM 118 (646)
Q Consensus 42 vs~~i~~G-e~~aI~GpsGaGKSTLL~~L~G~-~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~ 118 (646)
+|+.+.+| ++++|.||||+|||||||+|+|. +.+.. |. +||.+.. .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~--G~------------------~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS--GI------------------PIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh--CC------------------CccCCcccccc---chhhee
Confidence 78888887 99999999999999999999987 22221 21 2333221 111 111110
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAY 198 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~ 198 (646)
. .+... +.+.+ ....+|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 --~-----~i~~~------~si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 --A-----DIGDE------QSIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --e-----ecChH------hHHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 01111 1246999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHHcCCEEEEEecCCc
Q 039035 199 SV-IEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 199 ~i-~~~l~~l~~~g~tii~~~H~~~ 222 (646)
.+ ..++..+++.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 99 5688888888999999999964
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.38 E-value=1.2e-12 Score=137.31 Aligned_cols=166 Identities=25% Similarity=0.335 Sum_probs=121.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEE----------------------EccC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAY----------------------IMQE 104 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~y----------------------v~Q~ 104 (646)
+||++.+++|-||-||||-|++++|..+|.- |.-. ++ ..+...++| =+|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl--g~~~-~p-----p~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRYD-NP-----PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC--CCCC-CC-----cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 6899999999999999999999999998864 3210 00 001111111 0111
Q ss_pred CCCCC---CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCC
Q 039035 105 DRLFP---MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP 181 (646)
Q Consensus 105 ~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~ 181 (646)
-..+| ..+|.++|. ....++..+++++.+.|....++.+. .|||||-||.+||++.+.+.+
T Consensus 170 vd~ipr~~k~~v~~~l~-----------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~ad 233 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLD-----------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKAD 233 (592)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcc
Confidence 11111 012322221 12223356778888888877777664 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 182 LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 182 lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+.++|||.+-||...+..-...++.+....+=||++.||.+ .+.-+.|-+..|..
T Consensus 234 vyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 234 VYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred eeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEec
Confidence 99999999999999999999999999988999999999976 35557888888864
No 431
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=1.9e-11 Score=133.81 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=116.7
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC---C--------cccccccEEEEcc
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET---S--------PSLIKRTSAYIMQ 103 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~---~--------~~~~~~~i~yv~Q 103 (646)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.- . ...+++.+.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL--NVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe--EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 46789999 9999999999999999999999999999998876 9999965432 1 1235677899986
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC-hHHHHHHHHHHHHHhCCCE
Q 039035 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS-GGERRRVSIGVDIIHGPPL 182 (646)
Q Consensus 104 ~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-gGerqRv~ia~~L~~~P~l 182 (646)
.+.-.. .+....+.+ -.+.|....-|-+ +. .+-| .++ --|-+ |++.
T Consensus 222 ~~~~~~---~r~~~~~~a-------------~~iAEyfr~~g~~-Vl--l~~D----sltr~A~A~-----rEis----- 268 (438)
T PRK07721 222 SDQPAL---MRIKGAYTA-------------TAIAEYFRDQGLN-VM--LMMD----SVTRVAMAQ-----REIG----- 268 (438)
T ss_pred CCCCHH---HHHHHHHHH-------------HHHHHHHHHCCCc-EE--EEEe----ChHHHHHHH-----HHHH-----
Confidence 543110 111111111 0111122222321 10 0001 111 00111 1111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 183 LFLDEP--TSGLDSTSAYSVIEKVHNIAR--SGS-----TVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 183 llLDEP--tsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||.++ .+||++..+.+|+++.+++..+-
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence 122464 789999999999999999984 575 99999999764 68999999999999999987664
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.34 E-value=1.5e-12 Score=130.23 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPT-----SGLDSTSAYSVIEKVHNIAR 209 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPt-----sgLD~~~~~~i~~~l~~l~~ 209 (646)
-|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 433
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.29 E-value=1.5e-09 Score=111.37 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch-hhH--HHHHHHHHHHHHHHHHHHhhH
Q 039035 375 SETWILMRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFANP-KK------DS-QGI--TNRLCFFVFTVCIFFFSSNDA 444 (646)
Q Consensus 375 ~q~~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~------~~-~~~--~~~~g~~ff~~~~~~~~~~~~ 444 (646)
++++.+++|.++...|||..+..-+++.+++-+++|.+|-.. +. +. .+. .-..|++.+.+.+ .+...
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~---~~~~~ 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLF---NGMQS 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHH---HHHHh
Confidence 578899999999999999999999999999999999988542 11 00 011 1111222222211 11111
Q ss_pred HHHHHHhh--HHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch---HHHHHHHHHHHHHHHHHHH
Q 039035 445 VPAFIQER--FIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK---SFLYFLVVLYVSLLSTNSF 519 (646)
Q Consensus 445 v~~~~~er--~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~---~f~~f~~~~~l~~~~~~s~ 519 (646)
-.....|| ..+.+=+... .+...+.+++++...-..+++.+++.++.+.. |.+. ..+.....+++..++..++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 11222233 2333333333 47788999999999888888776655554432 4432 3333444455566777899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCccc---cccchhhhhhchhHHHHHHHHH
Q 039035 520 VVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDI---PSYWGWMNKISTITYPFEGLLM 579 (646)
Q Consensus 520 ~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiS~~~Y~~e~l~~ 579 (646)
|.++|+++++.+.+..+.++++.+++..+|.+.+.+.+ |.|++|+.+++|+.|..|++=.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~ 219 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRF 219 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999888888888888999999999998766 8899999999999999887754
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.28 E-value=8e-12 Score=142.46 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=70.1
Q ss_pred CCCChHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 160 RGVSGGERRRVSIGVDIIHG----PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~----P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999975 34689999999
Q ss_pred eCCe
Q 039035 236 ARGQ 239 (646)
Q Consensus 236 ~~G~ 239 (646)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=2e-11 Score=138.22 Aligned_cols=77 Identities=21% Similarity=0.392 Sum_probs=69.8
Q ss_pred CCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 160 RGVSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 699999999984 45799999999
Q ss_pred eCCe
Q 039035 236 ARGQ 239 (646)
Q Consensus 236 ~~G~ 239 (646)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.24 E-value=9e-12 Score=145.92 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE-KVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..+|+||+|++.|++++ ++|+++++|||++|+|+.....+.. ++..+.+.|.++|++||++. .....+|+..+. ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999998865 67778778999999999954 333345544433 45
Q ss_pred eEEEE
Q 039035 239 QLMFQ 243 (646)
Q Consensus 239 ~iv~~ 243 (646)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55543
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.23 E-value=5.9e-12 Score=128.35 Aligned_cols=179 Identities=20% Similarity=0.210 Sum_probs=105.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE--CCe-eCCccccccc---EEEEccCCCCCCCCCH---H
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL--DGK-ETSPSLIKRT---SAYIMQEDRLFPMLTV---F 114 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~--~g~-~~~~~~~~~~---i~yv~Q~~~l~~~lTv---~ 114 (646)
+.+.+||.++|+||+|+|||||++.|++.......+..+++ -++ ..+..++.+. +-.+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998765421133232 222 1222222221 222333222 111100 1
Q ss_pred HHHHHHHHccCCC----CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH--------HHHHHHHHHHHhCCCE
Q 039035 115 ETLMFAADFRLGP----ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE--------RRRVSIGVDIIHGPPL 182 (646)
Q Consensus 115 e~l~~~~~~~~~~----~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~ia~~L~~~P~l 182 (646)
.-+..+..++..+ +--++. .+..+..+++ .+ ...+.+|||+ +||+++|+++..+++|
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev---------~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTV---------VP-PSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhc---------cc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 1111111111000 000011 1111122222 22 2234589999 9999999999899999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 183 LFLDEPTSGLDSTSAYS-VIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 183 llLDEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+|+.|++
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999 999999654443 44 5555556899999999965 3578999999999987
No 438
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=2.6e-11 Score=147.70 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=74.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHH
Q 039035 157 EGTRGVSGGERRRVSIGVDIIH----------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQ 226 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~----------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 226 (646)
..++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4568899999999999999986 79999999999999999999999999999888999999999975 578
Q ss_pred hhcCeEEEEeCC
Q 039035 227 LLLDHLIILARG 238 (646)
Q Consensus 227 ~~~D~v~~L~~G 238 (646)
.++|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999764
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.23 E-value=8.2e-11 Score=119.03 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=91.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 039035 44 GDAPKGCITAVMGPSGAGKSTL-LDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD 122 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTL-L~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 122 (646)
+-+++|+++.|.|||||||||| ++.+.+..+++. . +.|+..+ .|..+.+.....
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~--~-----------------~~yi~~e------~~~~~~~~~~~~ 73 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY--S-----------------VSYVSTQ------LTTTEFIKQMMS 73 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC--c-----------------EEEEeCC------CCHHHHHHHHHH
Confidence 4589999999999999999999 789888655432 1 2344421 245555544333
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CH
Q 039035 123 FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII----HGPPLLFLDEPTSGL----DS 194 (646)
Q Consensus 123 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~P~lllLDEPtsgL----D~ 194 (646)
+.. .. ++.... +.-...+ .. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 74 ~g~---~~-------~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 74 LGY---DI-------NKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred hCC---ch-------HHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 221 11 111110 1000000 01 136666655544443332 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCcH------HHHhhcCeEEEEe
Q 039035 195 TSAYSVIEKVHNIARSGSTVILTIHQPSS------RIQLLLDHLIILA 236 (646)
Q Consensus 195 ~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 236 (646)
.....+.+.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88889999999998888888776664321 0133456666665
No 440
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=2e-11 Score=139.64 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=69.9
Q ss_pred CCCCCChHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHH
Q 039035 158 GTRGVSGGERRRVSIGVDII----------HGPPLLFLDEPT-SGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQ 226 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~----------~~P~lllLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~ 226 (646)
.+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 45789999999999999887 599999999998 789999999999999998 5899999999964 45
Q ss_pred hhcCeEEEEeC-CeE
Q 039035 227 LLLDHLIILAR-GQL 240 (646)
Q Consensus 227 ~~~D~v~~L~~-G~i 240 (646)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 68999999986 554
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.2e-10 Score=131.08 Aligned_cols=138 Identities=24% Similarity=0.388 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHH------HHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCC-
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLV------DQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP- 180 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l------~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P- 180 (646)
+..|++.|.+.|...+.+......-.+..+.++. ..+||.-. -.++...+|||||.||+-+|..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YL----tL~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYL----TLSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcc----cccccCCCcChhHHHHHHHHHHhcccce
Confidence 4457888888887766542211111122223332 33466432 123445689999999999999997654
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 181 -PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 181 -~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
=+++||||+.||-+..-.++++.|++|++.|-|+|++.||+ ++...+|+|+=+ +.|+|++.|+++++..
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36899999999999999999999999999999999999995 356789999987 5689999999999875
No 442
>PRK15066 inner membrane transport permease; Provisional
Probab=99.21 E-value=1.6e-08 Score=104.12 Aligned_cols=240 Identities=12% Similarity=0.133 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHH-HHHH-HH-hhHHHHHH
Q 039035 374 LSETWILMRRNFKNIRRTPEL-FLSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVC-IFFF-SS-NDAVPAFI 449 (646)
Q Consensus 374 ~~q~~~L~~R~~~~~~Rd~~~-~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~-~~~~-~~-~~~v~~~~ 449 (646)
++-++.+.+|..+...||+.. +..-+++.+++.++.|.++-....+..+. +..-+++-.+. +..+ .+ +.....+.
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~-~y~~fl~pGll~~~~~~~~~~~~~~~i~ 85 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF-SYMQFIVPGLIMMSVITNSYSNVASSFF 85 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999854 44555666666777776653211110111 11111111111 1111 12 22222333
Q ss_pred HhhHH-HHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 039035 450 QERFI-FIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK-SFLYFLVVLYVSLLSTNSFVVFVSSVV 527 (646)
Q Consensus 450 ~er~v-~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~-~f~~f~~~~~l~~~~~~s~~~~is~~~ 527 (646)
.+|.. ..++-..--.+...+.+++++...-..++..++..++.+...|.+. ....++..+++...+....|.++|++.
T Consensus 86 ~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~ 165 (257)
T PRK15066 86 SAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFA 165 (257)
T ss_pred HHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33311 0111122235778899999998877766666655555554446654 222233333333333334588888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcC
Q 039035 528 PNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALH 607 (646)
Q Consensus 528 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~ 607 (646)
++.+....+...++.+++..||.+.|.+++|.|++|+.+++|+.|..|++=..-+.+
T Consensus 166 ~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~----------------------- 222 (257)
T PRK15066 166 KSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI----------------------- 222 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC-----------------------
Confidence 888888888888899999999999999999999999999999999988875432210
Q ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039035 608 IKTEGWGKWEKVFILLGWAVFYRILFYIILRFF 640 (646)
Q Consensus 608 ~~~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~ 640 (646)
. ....|.++++++++.+++..++....|..
T Consensus 223 -~--~~~~~~~l~~l~~~~~v~~~la~~~~~r~ 252 (257)
T PRK15066 223 -S--DVPLWLAFAVLLVFIVVLYLLAWYLLERG 252 (257)
T ss_pred -C--CccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 12457888999998888887777766533
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.20 E-value=1.9e-11 Score=123.14 Aligned_cols=64 Identities=27% Similarity=0.463 Sum_probs=54.7
Q ss_pred CCCCChHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 159 TRGVSGGERRRVSIGVDIIHGP---PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P---~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3557999999999999988777 899999999999999999999999888777899999999974
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=6.4e-11 Score=118.50 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=88.2
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
..+-+|+++..++|++++|.||||+||||+++++++..--.. .| -.+..+. ..++++ +.++..+...|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-~G------~~vpa~~--~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-MG------MDVPAKS--MRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-cC------CccCccc--cEeccc---cEEEEecCccc
Confidence 468899999999999999999999999999999988632111 01 1111110 111111 12222222222
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS--GGERRRVSIGVDIIHGPPLLFLDEPTSGLD 193 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~~L~~~P~lllLDEPtsgLD 193 (646)
++.. ++| ..|.++++-....+++|+++++|||.+|+|
T Consensus 85 ~~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 85 DIMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred cccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 2211 111 123344444444457899999999999999
Q ss_pred HHHHHHHHHH-HHHHHHc-CCEEEEEecCCc
Q 039035 194 STSAYSVIEK-VHNIARS-GSTVILTIHQPS 222 (646)
Q Consensus 194 ~~~~~~i~~~-l~~l~~~-g~tii~~~H~~~ 222 (646)
+.....+... ++.+.+. +.++|++||++.
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 9999999888 7778775 999999999964
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.18 E-value=2.5e-10 Score=111.24 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCcH-----
Q 039035 158 GTRGVSGGERR------RVSIGVDIIHGPPLLFLDEPTSGLD---STSAYSVIEKVHNIARSGSTVILTIHQPSS----- 223 (646)
Q Consensus 158 ~~~~LSgGerq------Rv~ia~~L~~~P~lllLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~----- 223 (646)
.+..+|+|++| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34579999998 4555555667999999999999999 888888999999998889999999998653
Q ss_pred ---HHHhhcCeEEEEeC
Q 039035 224 ---RIQLLLDHLIILAR 237 (646)
Q Consensus 224 ---~i~~~~D~v~~L~~ 237 (646)
.+..++|.++.|+.
T Consensus 148 ~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 148 GGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CcCceeEeeeEEEEEEE
Confidence 25678999998873
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.15 E-value=1.3e-10 Score=122.68 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=95.9
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee-CCcccccccEEEEccCCC-CCCCCCHHHHHHH
Q 039035 42 ITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-TSPSLIKRTSAYIMQEDR-LFPMLTVFETLMF 119 (646)
Q Consensus 42 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~-l~~~lTv~e~l~~ 119 (646)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+.+.. +... .+..+.++.+... -...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~--~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~--------- 204 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE--RIITIEDTREIFLP-HPNYVHLFYSKGGQGLAK--------- 204 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc--cEEEEcCccccCCC-CCCEEEEEecCCCCCcCc---------
Confidence 557788999999999999999999999999998765 777775321 1100 1122322222100 0000
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 039035 120 AADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYS 199 (646)
Q Consensus 120 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~ 199 (646)
++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 205 ------------------------------------------~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 205 ------------------------------------------VTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ------------------------------------------cCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 111 1123445667999999999996 34
Q ss_pred HHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 200 VIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 200 i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
..+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667776643446799999976 45679999999999988888776654
No 447
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=3.9e-11 Score=116.14 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEP--TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.+||+++.+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 5999999999999999999999999995 33444 445677777767799999999983 356789999999999
Q ss_pred eEEEEc
Q 039035 239 QLMFQG 244 (646)
Q Consensus 239 ~iv~~g 244 (646)
+++..-
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 987663
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.12 E-value=8.2e-10 Score=130.83 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=61.1
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHH--------HhhcCeEEEEeCCeEEEEcCh
Q 039035 177 IHGPPLLFLDEPTSGL-DSTSAYSVIEKVHNIARSGSTVILTIHQPSSRI--------QLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 177 ~~~P~lllLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i--------~~~~D~v~~L~~G~iv~~g~~ 246 (646)
..+|.++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.... .+.||+.++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999999986532 368999999999988766643
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.11 E-value=2e-10 Score=108.43 Aligned_cols=63 Identities=24% Similarity=0.271 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTS----------GLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSR 224 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~ 224 (646)
.+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888888999999999999994 5555556666666666655699999999987643
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=102.83 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=55.1
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 155 GDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 155 g~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
|....+.-|-||-=---+.+. .++.-+.+||||-++|.+.-+.+++..|+++++.|.-+|++||.|-
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 344455689998654434333 4677899999999999999999999999999999999999999984
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=99.06 E-value=3.6e-10 Score=136.11 Aligned_cols=79 Identities=28% Similarity=0.381 Sum_probs=69.4
Q ss_pred CCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC
Q 039035 157 EGTRGVSGGERR------RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 157 ~~~~~LSgGerq------Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 230 (646)
..+..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCC
Confidence 346789999999 455566788999999999999999999999999999998877889999999963 568999
Q ss_pred eEEEEeC
Q 039035 231 HLIILAR 237 (646)
Q Consensus 231 ~v~~L~~ 237 (646)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999984
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.04 E-value=6.8e-10 Score=134.89 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh
Q 039035 157 EGTRGVSGGERRRVSIGVDIIH--------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL 228 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~~--------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~ 228 (646)
..+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|+||+++||.+ .....+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4578899999999999999995 8999999999999999999999999999998899999999974 334455
Q ss_pred cCeEEEEeC
Q 039035 229 LDHLIILAR 237 (646)
Q Consensus 229 ~D~v~~L~~ 237 (646)
-.+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
No 453
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=7e-10 Score=120.68 Aligned_cols=156 Identities=20% Similarity=0.160 Sum_probs=109.8
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.. .+|.|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~--gvI~~iGerg---------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI--NVISLVGERG---------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe--EEEEeCCCCc---------------------ccHHH
Confidence 4578885 9999999999999999999999999999988765 7776655321 25666
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH-------hCCCEEEEeCC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII-------HGPPLLFLDEP 188 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-------~~P~lllLDEP 188 (646)
.+.... ..-|+... ..+ ....+-|.|+|+|+..+.+.+ .++-++++|+|
T Consensus 200 ~~~~~l--------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDsl 255 (432)
T PRK06793 200 FIRKEL--------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSV 255 (432)
T ss_pred HHHHHh--------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecch
Confidence 544211 11122110 011 123568999999999998888 78999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 189 TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 189 tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
|...|+. .++-..+.+.-..|.+..+.+|. + ++++|.-...+|.+...+..
T Consensus 256 Tr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 256 TRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 9999996 45555555555458888888884 2 23444444578888766544
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=2.7e-09 Score=128.70 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=66.9
Q ss_pred CCCCCChHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEecCCcHHHHhh
Q 039035 158 GTRGVSGGERRRVSI------GVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA-RS-G-STVILTIHQPSSRIQLL 228 (646)
Q Consensus 158 ~~~~LSgGerqRv~i------a~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~~H~~~~~i~~~ 228 (646)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... .. | .+||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 489999999999999999999999999999998754 33 3 48999999974 4578
Q ss_pred cCeEEEEe
Q 039035 229 LDHLIILA 236 (646)
Q Consensus 229 ~D~v~~L~ 236 (646)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=6.1e-09 Score=105.67 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=97.8
Q ss_pred cccccce-eEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 039035 36 VDLLNKI-TGDAPKGCITAVMGPSGAGKSTLLDGLA-GRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 36 ~~iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
..-|+.+ .+-+++|.++.|.|++|+|||||...++ +..+.+ +.+.|+..+. +.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------------------~~~~y~~~e~------~~ 65 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG-------------------KKVYVITTEN------TS 65 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC-------------------CEEEEEEcCC------CH
Confidence 4456665 6679999999999999999999998875 222111 1234444321 23
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHh--CCCEEEEeCCCCC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH--GPPLLFLDEPTSG 191 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~--~P~lllLDEPtsg 191 (646)
.+.+.-...+ ++... +.+. -|.....+.... .....|.++++.+.....++. +|+++++||||+.
T Consensus 66 ~~~~~~~~~~---g~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~ 132 (234)
T PRK06067 66 KSYLKQMESV---KIDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIF 132 (234)
T ss_pred HHHHHHHHHC---CCChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHH
Confidence 3332222111 11110 0000 011111111111 112356788999999999997 9999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH------HHHhhcCeEEEEe
Q 039035 192 ---LDSTSAYSVIEKVHNIARSGSTVILTIHQPSS------RIQLLLDHLIILA 236 (646)
Q Consensus 192 ---LD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~------~i~~~~D~v~~L~ 236 (646)
+|.....++++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 133 ~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 133 ATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677777789999999998643 1345666666665
No 456
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.91 E-value=1.7e-07 Score=96.45 Aligned_cols=165 Identities=20% Similarity=0.230 Sum_probs=122.7
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCc--hHHHHHHHHHHHHHHHHHHHHHHHH-HhcCC
Q 039035 453 FIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLR--KSFLYFLVVLYVSLLSTNSFVVFVS-SVVPN 529 (646)
Q Consensus 453 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~--~~f~~f~~~~~l~~~~~~s~~~~is-~~~~~ 529 (646)
..+.|=..+.. +...+++++.+.......+...+...++.+..|.. ..+..+..++.+..+...++|.+++ ...++
T Consensus 118 g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 196 (286)
T COG0842 118 GTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQ 196 (286)
T ss_pred CcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344333333 22567777777777776666666666666666633 3666666677777777788888666 36677
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCCCCCccCCCCCcccchHHHHHhcCCc
Q 039035 530 YIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQTNEPFATDRSGNIVTGFDILDALHIK 609 (646)
Q Consensus 530 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~~~~~~~~~~~c~~~g~~~L~~~~~~ 609 (646)
.+.+..+...+..++..++|.+.|.+.+|.|++|+.++.|..|+.+++-.....+..
T Consensus 197 ~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~----------------------- 253 (286)
T COG0842 197 LQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR----------------------- 253 (286)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-----------------------
Confidence 788888888889999999999999999999999999999999999998776654332
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 039035 610 TEGWGKWEKVFILLGWAVFYRILFYIILRFFSKN 643 (646)
Q Consensus 610 ~~~~~~w~~~~il~~~~~~~~~~~~~~L~~~~~~ 643 (646)
....|.++++++++.+++.+++...++...+.
T Consensus 254 --~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 --NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11267889999999999999998888776553
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.86 E-value=1.3e-08 Score=100.80 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
+++++|..+|+++++|||. |......++ +.+..|..++.|+|.++. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4677888999999999996 655433333 455679999999999763 46788886663
No 458
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=4.3e-09 Score=131.06 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=61.6
Q ss_pred CCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCCcHHHHhh
Q 039035 160 RGVSGGERR------RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-----SGSTVILTIHQPSSRIQLL 228 (646)
Q Consensus 160 ~~LSgGerq------Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~~~i~~~ 228 (646)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 579999999 99999999999999999999999999999999999988742 3789999999965 46665
Q ss_pred c
Q 039035 229 L 229 (646)
Q Consensus 229 ~ 229 (646)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 459
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.84 E-value=2.1e-08 Score=102.18 Aligned_cols=136 Identities=26% Similarity=0.415 Sum_probs=85.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC-eeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG-KETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP 127 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g-~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 127 (646)
|++..|.||+|+|||||.-.++=-... |.=++.+ .... -...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~----G~~~~g~~~~~~---~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL----GKNLFGGGLKVT---EPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc----CccccCCccccC---CCceEEEEECCC----------------------
Confidence 678999999999999999777632211 2111111 1110 123355554222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHH----------------HHHhCCCEEEEeCCCC-
Q 039035 128 ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGV----------------DIIHGPPLLFLDEPTS- 190 (646)
Q Consensus 128 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------~L~~~P~lllLDEPts- 190 (646)
+.++..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 22344556666677666544333222 2244555554433 235799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCc
Q 039035 191 -----GLDSTSAYSVIEKVHNIARS-GSTVILTIHQPS 222 (646)
Q Consensus 191 -----gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 222 (646)
.+|+.....+++.|++++++ |.+|++++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999864
No 460
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=2.6e-09 Score=116.08 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=46.0
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee-EEEECCeeCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG-KVTLDGKETS 90 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~g~~~~ 90 (646)
..+|++||+++++||+++|+|||||||||||+ +|+..|.+ | +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 46899999999999999999999999999999 77777765 6 8999998874
No 461
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.83 E-value=4.3e-09 Score=130.29 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=67.3
Q ss_pred CCCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeE
Q 039035 157 EGTRGVSGGERRRVSIGVDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 232 (646)
..+..||||||+|++||++++ .+|+++||||||+|||+.....+.++|+.+++ +.+||++||++. ....||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence 456789999999999999985 57799999999999999999999999999875 478999999976 34689998
Q ss_pred EEEe
Q 039035 233 IILA 236 (646)
Q Consensus 233 ~~L~ 236 (646)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7654
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.82 E-value=1.5e-08 Score=111.89 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=96.0
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
.++++.+..+++|++++++||||+||||++..|++...... |. +++++|.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH--GA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc--CC--------------CeEEEEeCCc---cchhHHHH
Confidence 45677777888999999999999999999999999764432 31 2578888875 44789999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH-HHHHHHHHHhCC-----CEEEEeCCCC
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR-RVSIGVDIIHGP-----PLLFLDEPTS 190 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~ia~~L~~~P-----~lllLDEPts 190 (646)
|.+.++... ++........+...+..++.+.....|. +...+++. .+.-..+++.++ .+|+||.++.
T Consensus 305 Lr~~AeilG--Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 305 LRIYGKILG--VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHHhC--CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 998776542 2211112233445556677765544443 22222322 234444455554 6899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 039035 191 GLDSTSAYSVIEKVHNIARSGSTVILTIH 219 (646)
Q Consensus 191 gLD~~~~~~i~~~l~~l~~~g~tii~~~H 219 (646)
+ ..+.+.++.....+.+=++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3345555555555655455555
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=3.2e-07 Score=83.18 Aligned_cols=118 Identities=27% Similarity=0.324 Sum_probs=77.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP 127 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 127 (646)
+|..+.|.||+|+||||+++.|+....... .+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVL------------------DQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCH------------------HHHH-----------
Confidence 467899999999999999999999875431 1344444432211000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 039035 128 ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE----- 202 (646)
Q Consensus 128 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~----- 202 (646)
.. ..........+++..+..+..+--.+|+++++||+..-.+.........
T Consensus 51 --------------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 --------------LI----------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred --------------hh----------hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 00 0000112467777888778877777789999999999999988887665
Q ss_pred -HHHHHHHcCCEEEEEec
Q 039035 203 -KVHNIARSGSTVILTIH 219 (646)
Q Consensus 203 -~l~~l~~~g~tii~~~H 219 (646)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22333345789999998
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.74 E-value=2.2e-08 Score=120.63 Aligned_cols=77 Identities=32% Similarity=0.507 Sum_probs=66.9
Q ss_pred CCCCChHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCCcHHH
Q 039035 159 TRGVSGGERR------RVSIGVDIIHG-----P-PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGS-TVILTIHQPSSRI 225 (646)
Q Consensus 159 ~~~LSgGerq------Rv~ia~~L~~~-----P-~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~~H~~~~~i 225 (646)
+..||||||+ |++++++++.+ | +++|+||||++||+.....+.++|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999988864 3 67999999999999999999999999987664 8999999975 3
Q ss_pred HhhcCeEEEEeC
Q 039035 226 QLLLDHLIILAR 237 (646)
Q Consensus 226 ~~~~D~v~~L~~ 237 (646)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 467999999964
No 465
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=2e-08 Score=124.40 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=68.2
Q ss_pred CCCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEE
Q 039035 158 GTRGVSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~ 233 (646)
.+..||||||++++||.+++. +|++++||||++|||+..+..+.++|+++++ +..+|++||++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 478999999964 568999998
Q ss_pred EEeC
Q 039035 234 ILAR 237 (646)
Q Consensus 234 ~L~~ 237 (646)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7764
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.67 E-value=2.6e-07 Score=110.20 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 172 IGVDIIHGPPLLFLDEPTSGL-DSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 172 ia~~L~~~P~lllLDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
|++++..+|.++++|||+.+| |+..+..+.+.++.+++.|.+++++||++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567788999999999999999 7999999999999999889999999999865
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.65 E-value=4.1e-08 Score=96.13 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=60.8
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCC--CCCCCCCHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQED--RLFPMLTVFE 115 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~--~l~~~lTv~e 115 (646)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++. |.|.+.+..-.....+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~--~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE--RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC--CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4455567789999999999999999999999999998876 99999774321112234566666544 3466678888
Q ss_pred HHHHHHH
Q 039035 116 TLMFAAD 122 (646)
Q Consensus 116 ~l~~~~~ 122 (646)
.+..+.+
T Consensus 92 ~l~~~lR 98 (186)
T cd01130 92 LLRSALR 98 (186)
T ss_pred HHHHHhc
Confidence 7766543
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.64 E-value=6.2e-08 Score=106.43 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=111.8
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC-----------cccccccEEEEcc
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS-----------PSLIKRTSAYIMQ 103 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~-----------~~~~~~~i~yv~Q 103 (646)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|+.-. ...+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~--~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV--NVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE--EEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 46789999 9999999999999999999999999999988765 77666554321 1123344455554
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh-HHHHHHHHHHHHHhCCCE
Q 039035 104 EDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG-GERRRVSIGVDIIHGPPL 182 (646)
Q Consensus 104 ~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~~L~~~P~l 182 (646)
-+. ++.+-..- +.. ... +.+.+...|-+ +. .+-| .++- -|-+| ++.
T Consensus 227 ~d~-----~p~~r~~~-~~~---------a~t-~AE~frd~G~~-Vl--l~~D----slTr~A~A~R-----Eis----- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKG-AYV---------ATA-IAEYFRDQGKD-VL--LLMD----SVTRFAMAQR-----EIG----- 273 (440)
T ss_pred CCC-----CHHHHHHH-HHH---------HHH-HHHHHHHCCCC-EE--EEEe----ChHHHHHHHH-----HHH-----
Confidence 332 12111110 000 001 11122222321 10 0111 1111 11111 111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHH
Q 039035 183 LFLDEP--TSGLDSTSAYSVIEKVHNIARSGS-------TVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 183 llLDEP--tsgLD~~~~~~i~~~l~~l~~~g~-------tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 252 (646)
+.+.|| +.|+|+.....+.+++.+....+. ||++.+||..+ .++|++..+.+|+++.+...++...|
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~~~~ 349 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQRGHY 349 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhCCcc
Confidence 234675 459999999999999999887666 88888898643 47899999999999999988775433
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.63 E-value=8.2e-09 Score=104.30 Aligned_cols=48 Identities=29% Similarity=0.513 Sum_probs=35.8
Q ss_pred ccccce-eEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCcceeEEEECCe
Q 039035 37 DLLNKI-TGDAPKGCITAVMGPSGAGKSTLLDGLA--GRIASGSLKGKVTLDGK 87 (646)
Q Consensus 37 ~iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~--G~~~~~~~~G~I~~~g~ 87 (646)
.-|+.+ .+-+++|++++|.||+|+|||||...++ +. .++. +.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~--~~~~is~e 57 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGD--PVIYVTTE 57 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCC--eEEEEEcc
Confidence 456664 5789999999999999999999988654 43 3343 55677654
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=1.3e-08 Score=114.05 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=102.4
Q ss_pred cccccce-eEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCcceeEEEECCeeCCccccc---ccEEEEccCCCCCC
Q 039035 36 VDLLNKI-TGDAPKGCITAVMGPSGAGKSTLLDGL--AGRIASGSLKGKVTLDGKETSPSLIK---RTSAYIMQEDRLFP 109 (646)
Q Consensus 36 ~~iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L--~G~~~~~~~~G~I~~~g~~~~~~~~~---~~i~yv~Q~~~l~~ 109 (646)
..-||.+ .+=+++|.++.|.||+|||||||..-. .|....+. .-+++...+.. +.++ +..|+-.|+..--.
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge--~~lyvs~eE~~-~~l~~~~~~~G~~~~~~~~~g 83 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE--PGVFVTFEESP-QDIIKNARSFGWDLQKLVDEG 83 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEEEecCH-HHHHHHHHHcCCCHHHHhhcC
Confidence 4457775 678999999999999999999998765 45544343 55666554322 1111 22343333111000
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH--HHHHhCCCEEEEeC
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIG--VDIIHGPPLLFLDE 187 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~~L~~~P~lllLDE 187 (646)
.+.+. ..... ...+.+++.+++++..+... +.+|+|++|||.|+ .++..+|+..
T Consensus 84 ~l~~~------------~~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~---- 139 (484)
T TIGR02655 84 KLFIL------------DASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV---- 139 (484)
T ss_pred ceEEE------------ecCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----
Confidence 00000 00000 00112333444444333332 46999999999999 6666665433
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH-------H-HhhcCeEEEEe
Q 039035 188 PTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSR-------I-QLLLDHLIILA 236 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~-------i-~~~~D~v~~L~ 236 (646)
...+..+.++++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 ------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999986421 1 45789999887
No 471
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.58 E-value=1.1e-06 Score=83.10 Aligned_cols=127 Identities=13% Similarity=0.013 Sum_probs=90.3
Q ss_pred HHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch--HHHHHHHHH---HHHHHHHHHHHHHH
Q 039035 449 IQERFIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK--SFLYFLVVL---YVSLLSTNSFVVFV 523 (646)
Q Consensus 449 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~--~f~~f~~~~---~l~~~~~~s~~~~i 523 (646)
-.|+.++.|-+..-. +.+.|+++|++...-..+++.++..++.++ .|.+. .+...++++ .+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777766655 789999999999999999998877777754 37764 222222233 33333344445555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHH
Q 039035 524 SSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLL 578 (646)
Q Consensus 524 s~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~ 578 (646)
+...++.+ +......+.+|+...+|.++|.+++|.|++|+.+++|++|+.+++=
T Consensus 93 a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 44445544 3334566778888899999999999999999999999999999874
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=2.9e-07 Score=98.77 Aligned_cols=124 Identities=21% Similarity=0.308 Sum_probs=77.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL 125 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 125 (646)
.+++.++.|.||+||||||+|++|.+.+.+. ..|.|.....++... .....+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~~-~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEYV-HRNKRSLINQRE-------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhhh-ccCccceEEccc--------------------
Confidence 3578899999999999999999999866432 126665544332210 000011111100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 039035 126 GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH 205 (646)
Q Consensus 126 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~ 205 (646)
.|.. ..+ -.-++..+|-.+|+++++||+. |+.++...++
T Consensus 177 ------------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~--- 215 (343)
T TIGR01420 177 ------------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT--- 215 (343)
T ss_pred ------------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence 0100 001 1123556788899999999997 8888765444
Q ss_pred HHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 206 NIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 206 ~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
.+..|.+|+.|+|..+. ....+|++-|
T Consensus 216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 -AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred -HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 45679999999998653 4567777654
No 473
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=1.1e-07 Score=103.85 Aligned_cols=173 Identities=19% Similarity=0.212 Sum_probs=112.4
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-ceeEEEECCeeCCc---------ccccccEEEEcc
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-LKGKVTLDGKETSP---------SLIKRTSAYIMQ 103 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-~~G~I~~~g~~~~~---------~~~~~~i~yv~Q 103 (646)
.+..+++++ +.+.+||.++|+||||+|||||+++|+|..+++. +-|.|-.+|.++.. ...+..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 356799999 9999999999999999999999999999987763 22555555554421 112457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCC-CCCH---HHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhC
Q 039035 104 EDRLFPMLTVFETLMFAADFRLG-PISW---SDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHG 179 (646)
Q Consensus 104 ~~~l~~~lTv~e~l~~~~~~~~~-~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 179 (646)
++..+..+++.|++.+.+..... +.+- -+.-.+.-+..++++ +
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REis--------------------------l------- 266 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIA--------------------------L------- 266 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHH--------------------------H-------
Confidence 99999999999999877654210 0000 000001111111111 1
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHH-c--C-CEEEEEecCCcHHHH-hhcCeEEEEeCCeEEEEc
Q 039035 180 PPLLFLDEP--TSGLDSTSAYSVIEKVHNIAR-S--G-STVILTIHQPSSRIQ-LLLDHLIILARGQLMFQG 244 (646)
Q Consensus 180 P~lllLDEP--tsgLD~~~~~~i~~~l~~l~~-~--g-~tii~~~H~~~~~i~-~~~D~v~~L~~G~iv~~g 244 (646)
.+.|| +.|-.+..-..+-+++.+..+ + | .|.+.+..-+.+++. -++|.+.-+-||+|+.+-
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 22354 337777777777777777532 2 2 577777765544332 366777888899998754
No 474
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.2e-07 Score=102.36 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 160 RGVSGGERRRVSIGVDIIH---------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~---------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|.+. |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 789999999864
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.51 E-value=2.3e-07 Score=101.43 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=108.3
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC---e
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG---K 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g---~ 87 (646)
.++.++++..+.. +..+++.++ .+.+||.++|+||||+||||||++|+++.+++. |.|.+.| +
T Consensus 139 ~~~r~~v~~~l~T-----------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~--gvv~liGergr 204 (450)
T PRK06002 139 AMTRARVETGLRT-----------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT--VVIALVGERGR 204 (450)
T ss_pred CeEeecceEEcCC-----------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe--eeeeecccCCc
Confidence 5667777766643 246888886 899999999999999999999999999998876 9998865 4
Q ss_pred eCCc-------ccccccEEEEccCCCCCCCCCHHHHH--HHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 88 ETSP-------SLIKRTSAYIMQEDRLFPMLTVFETL--MFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 88 ~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++.. ...++.+++|+|.+.- +.+-+ .+.+ ....| .+..-|-+ ..+--
T Consensus 205 ev~e~~~~~l~~~r~rtI~vV~qsd~~-----~~~r~~~~~~a------------~~iAE-yfrd~G~~----Vll~~-- 260 (450)
T PRK06002 205 EVREFLEDTLADNLKKAVAVVATSDES-----PMMRRLAPLTA------------TAIAE-YFRDRGEN----VLLIV-- 260 (450)
T ss_pred cHHHHhHHHHHHhhCCeEEEEEcCCCC-----HHHHHHHHHHH------------HHHHH-HHHHcCCC----EEEec--
Confidence 4321 1234679999998752 11111 1110 01111 11111211 11100
Q ss_pred CCCCCh-HHHHH-HHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--c--C-CEEEEEecCCcHHHH-hh
Q 039035 159 TRGVSG-GERRR-VSIGVDIIHGPPLLFLDEP--TSGLDSTSAYSVIEKVHNIAR--S--G-STVILTIHQPSSRIQ-LL 228 (646)
Q Consensus 159 ~~~LSg-GerqR-v~ia~~L~~~P~lllLDEP--tsgLD~~~~~~i~~~l~~l~~--~--g-~tii~~~H~~~~~i~-~~ 228 (646)
..++- -|-+| +++ .+.|| +-|-.+..-..+-+++.+..+ . | .|.+.+..-+.+++. -+
T Consensus 261 -DslTr~A~A~rEisl-----------~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI 328 (450)
T PRK06002 261 -DSVTRFAHAAREVAL-----------AAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPV 328 (450)
T ss_pred -cchHHHHHHHHHHHH-----------hcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCcc
Confidence 01110 11111 111 23455 336777666677777776653 2 2 588887766544432 25
Q ss_pred cCeEEEEeCCeEEEEc
Q 039035 229 LDHLIILARGQLMFQG 244 (646)
Q Consensus 229 ~D~v~~L~~G~iv~~g 244 (646)
+|.+.-+-||+++.+-
T Consensus 329 ~d~~~~i~Dg~ivLsr 344 (450)
T PRK06002 329 ADSIRGTLDGHIVLDR 344 (450)
T ss_pred HHHHHhhcceEEEEcH
Confidence 6777777788888754
No 476
>PRK14079 recF recombination protein F; Provisional
Probab=98.48 E-value=2.7e-07 Score=99.17 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC
Q 039035 160 RGVSGGERRRVSIGVDII---------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~---------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 230 (646)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+|+.| +.+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 457999999999999998 899999999999999999999999888653 24555555543 4689
Q ss_pred eEEEEeCCeEEEEc
Q 039035 231 HLIILARGQLMFQG 244 (646)
Q Consensus 231 ~v~~L~~G~iv~~g 244 (646)
+++.+.+|++.-..
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999998875433
No 477
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.47 E-value=4.3e-07 Score=109.58 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=69.8
Q ss_pred CCCCCChHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 158 GTRGVSGGERRRVSIGVDII------HG--PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~------~~--P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
.+..|||||+-.++||.+|+ .+ -++|||||||..||+.....+++.|..+...|.+|+++||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 67899999999888877774 45 699999999999999999999999999998899999999995 477899
Q ss_pred CeEEEEeC
Q 039035 230 DHLIILAR 237 (646)
Q Consensus 230 D~v~~L~~ 237 (646)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
No 478
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.46 E-value=4e-06 Score=99.88 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=44.2
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 175 DIIHGPPLLFLDEPTSGLD-STSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 175 ~L~~~P~lllLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||+|..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999999889999999999864
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=3.1e-07 Score=90.72 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=62.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCH
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISW 130 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 130 (646)
+++|.||||||||||.++|++.+.. |.+. ++++|+.. ..++..+......... ..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~----~~~~----------------v~~~D~~~-~~~~~~~~~~~~~~~~--~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN----PKVV----------------IISQDSYY-KDLSHEELEERKNNNY--DHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC----CCeE----------------EEEecccc-cccccccHHHhccCCC--CCCC
Confidence 5799999999999999999998721 3232 23333221 1122222211110000 0001
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 131 SDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 131 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
....+...+.+..+...+..+.+ ....|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11112334556666554333332 23577777766554 5678999999999999876
No 480
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.00017 Score=74.32 Aligned_cols=202 Identities=13% Similarity=0.180 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHhcChHHH-----HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH-HH--HHhhH
Q 039035 373 FLSETWILMRRNFKNIRRTPELF-----LSRLMVLTVMGFMMATMFANPKKDSQGITNRLCFFVFTVCIF-FF--SSNDA 444 (646)
Q Consensus 373 ~~~q~~~L~~R~~~~~~Rd~~~~-----~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~g~~ff~~~~~-~~--~~~~~ 444 (646)
.++..+.|.+|..+..+|+..+= ..=+++.++++++.|.++-..+. +..-.++..+... ++ +....
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~------~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL------NFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chHHHHHHHHHHHHHHHHHHHhH
Confidence 35677889999999999987432 22334555555555555433211 1221222222222 22 23344
Q ss_pred HHHHHHhhHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCch-HHHHHHHHHHHHHHHHHHHHHHH
Q 039035 445 VPAFIQERFIFIRETSHNAYRASSYTIAGLITYLPFLLLQSAVYAGIVWKALGLRK-SFLYFLVVLYVSLLSTNSFVVFV 523 (646)
Q Consensus 445 v~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~-~f~~f~~~~~l~~~~~~s~~~~i 523 (646)
...+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.++ +.......+.+..+.+.++|.++
T Consensus 90 ~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 90 AGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665442 3889999999999988777777776666666666654 55555566666777777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhhccccCCccccccchhhhhhchhHHHHHHHHHHhhCC
Q 039035 524 SSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDIPSYWGWMNKISTITYPFEGLLMNQFQT 584 (646)
Q Consensus 524 s~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiS~~~Y~~e~l~~nef~~ 584 (646)
|+++.-+.=-..+.+.++-+++..+|.+-+.+++|.-++|+.++||+.+-.|.+=..-+.+
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 8776555544455566677888899999999999999999999999999998876666643
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.33 E-value=1.2e-06 Score=104.50 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=83.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
..+-+|+++. +.+.++.|.|||++||||+||.++-..--.. -| .|||=+..- +++.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq-~G------------------~~VPa~~a~---i~~~d 651 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQ-IG------------------SFVPAESAR---IGIVD 651 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHh-cC------------------CceeccceE---ecccC
Confidence 3467788887 6788999999999999999999874321000 01 122211100 00111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH--hCCCEEEEeCC---CC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII--HGPPLLFLDEP---TS 190 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~--~~P~lllLDEP---ts 190 (646)
.+..++|-. |...++.|-=+.....++..|- ++++++++||| |+
T Consensus 652 -----------------------~I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 011111111 1112356665555555655554 48999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCe
Q 039035 191 GLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 191 gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 231 (646)
.+|..+ ....+++.+.+. |.+++++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888433 355566667665 58999999994 46777775
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.33 E-value=3.3e-07 Score=88.90 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=45.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-cc-cccEEEEccCCCCCCCCCHHHHHHH
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-LI-KRTSAYIMQEDRLFPMLTVFETLMF 119 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-~~-~~~i~yv~Q~~~l~~~lTv~e~l~~ 119 (646)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... .. +...|+.+|+...++..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998754 46777665321 11 1234666666544455555555443
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.29 E-value=1.9e-06 Score=106.51 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=37.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG 86 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g 86 (646)
-+++..+++++++|.|++|+|||||++++++..... .+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~-F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ-FQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc-CCeEEEeec
Confidence 345677889999999999999999999998876443 359998876
No 484
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.29 E-value=0.00024 Score=72.51 Aligned_cols=183 Identities=14% Similarity=0.176 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Q 039035 378 WILMRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFAN----PKKDSQGITNRLCFFVFTVCIFFFSSNDAVPAFIQERF 453 (646)
Q Consensus 378 ~~L~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~----~~~~~~~~~~~~g~~ff~~~~~~~~~~~~v~~~~~er~ 453 (646)
+.+.||.++.+.|.|..+..-.+..++.|+... .|.+ ...+..+.+...+.. ...+.+. +|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~-----~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLW-VFPGDFNILDYGYADLTPFFSLA--PWVFLFL-----IPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHhhhhhHHhcCcchHHHHHHHH--HHHHHHH-----HHHH--HHH
Confidence 467899999999999998877777777775432 2211 111112222211111 1111111 1111 124
Q ss_pred HHHHHhcCCCC--------ChhHHHHHHHHHHHHHHHHHH---HhhhhhhhcccC----Cch-HHHHHHHHHHHHHHHHH
Q 039035 454 IFIRETSHNAY--------RASSYTIAGLITYLPFLLLQS---AVYAGIVWKALG----LRK-SFLYFLVVLYVSLLSTN 517 (646)
Q Consensus 454 v~~rE~~~~~Y--------~~~~y~la~~l~~lp~~~~~~---~if~~i~Y~~~g----l~~-~f~~f~~~~~l~~~~~~ 517 (646)
.+.+||++|.. +...++++|.++-.-+.++.. +++....++... +.. .++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 56677777764 568889999998865544332 222222222211 111 33333444455666778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccccCCccc--cccchhhhhhchhHHH
Q 039035 518 SFVVFVSSVVPNYIIGYAAVIAFTALFFLFCGFFVTSNDI--PSYWGWMNKISTITYP 573 (646)
Q Consensus 518 s~~~~is~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiS~~~Y~ 573 (646)
++|.++|+++.+..+|..++..+.. .++.|+.. ..++ |.+.+|+.|+||..|-
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~ 206 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGSAYTISELGLSYHY 206 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhHHHHHHHcCHHHHH
Confidence 9999999999998888655433322 22222211 2333 7888999999997764
No 485
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.27 E-value=2.1e-05 Score=93.97 Aligned_cols=47 Identities=26% Similarity=0.267 Sum_probs=42.7
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 177 IHGPPLLFLDEPTSGLD-STSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 177 ~~~P~lllLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
-.+|.++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 35899999999999999 788999999999999889999999999863
No 486
>PRK01889 GTPase RsgA; Reviewed
Probab=98.24 E-value=1e-06 Score=94.92 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=71.4
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
++.+.-.+++|++++|+|+||+|||||++.|+|...+.. |+|.+++..-.....++.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~--G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKT--GAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccce--eeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 455555678999999999999999999999999988866 9999987543222345678999998877764 3444443
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNT 152 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 152 (646)
+... ............++.+.+...+|.+.
T Consensus 262 l~~~----~~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 262 LWDA----EDGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred ccCc----hhhHHHhHHHHHHHHccCCCCCCCCC
Confidence 3210 00011222345566666666666543
No 487
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.23 E-value=1.6e-06 Score=107.98 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=53.2
Q ss_pred CCCCCChHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 039035 158 GTRGVSGGERRRVS----IGVD--------IIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ 220 (646)
Q Consensus 158 ~~~~LSgGerqRv~----ia~~--------L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 220 (646)
...+||||||||+. +|++ +..+|++++|||||+|||+.....+++++.++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35789999999996 5644 55899999999999999999999999999888 7899999987
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.20 E-value=8.4e-06 Score=84.47 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=34.3
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+...|+++.+-+.+|+++.|.||+|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999998877543
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.16 E-value=2.3e-06 Score=67.69 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=30.8
Q ss_pred cccceeEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 38 LLNKITGDAPK-GCITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 38 iL~~vs~~i~~-Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
-.++.++.+.+ |+++.|.|||||||||||++|.=.+.+
T Consensus 11 ~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 11 SFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred ccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 35567778876 579999999999999999998765544
No 490
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.16 E-value=4.4e-06 Score=91.56 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=72.2
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC---eeCCc---ccc---cccEEEE----
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG---KETSP---SLI---KRTSAYI---- 101 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g---~~~~~---~~~---~~~i~yv---- 101 (646)
...+++++ +.+.+||.++|+|+||+|||||+++|+|..+... .|.|.+.| +++.. ..+ ....+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~-~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD-VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC-ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 46789998 9999999999999999999999999999874321 27777755 44321 111 1234455
Q ss_pred -ccCCC--CCCCCCHHHHHHHHHHccCCC-CCHHHHHHHHHHHHHHcCCC
Q 039035 102 -MQEDR--LFPMLTVFETLMFAADFRLGP-ISWSDKKQRVENLVDQLGLT 147 (646)
Q Consensus 102 -~Q~~~--l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~ 147 (646)
+|++. +.+.+ +...+....+..... +...+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 44444 444444333222111 23355677889999999984
No 491
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.13 E-value=5.8e-06 Score=91.80 Aligned_cols=62 Identities=10% Similarity=0.261 Sum_probs=43.4
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHH-cCCEEEEEecCCcH-------HHHhhcCeEEEEeCCe
Q 039035 178 HGPPLLFLDEPTSG----LD-----STSAYSVIEKVHNIAR-SGSTVILTIHQPSS-------RIQLLLDHLIILARGQ 239 (646)
Q Consensus 178 ~~P~lllLDEPtsg----LD-----~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~-------~i~~~~D~v~~L~~G~ 239 (646)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+..++|.++.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47899999987652 11 2234556666777765 59999999996432 1567899999998654
No 492
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.08 E-value=7.1e-06 Score=88.25 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=48.7
Q ss_pred CCceEEEEeEEEEEecccccccccccccccccc-----------ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLN-----------KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
..+.++|+||++.|++. +.+|+ |+++.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 127 ~~~ri~Fe~LTf~YP~e-----------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 127 AKNRVLFENLTPLYPNE-----------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred cCCCeEEEEeeecCCCc-----------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34589999999999753 24675 9999999999999999999999999999998764
No 493
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.05 E-value=5e-06 Score=84.14 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=51.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeE----EEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHH
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGK----VTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAA 121 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~----I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~ 121 (646)
-.+..+++|.||||||||||.+.|++.+++.. |. |.+++..... ..++..|++++.+ .+..+++.+.+.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~--g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~ 105 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG--ELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLR 105 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc--CCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHH
Confidence 35678999999999999999999999998865 77 5555533322 2233457776543 345667777666655
Q ss_pred Hcc
Q 039035 122 DFR 124 (646)
Q Consensus 122 ~~~ 124 (646)
.++
T Consensus 106 ~l~ 108 (229)
T PRK09270 106 RLR 108 (229)
T ss_pred HHH
Confidence 443
No 494
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=1.4e-05 Score=73.16 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCCc
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-----SGSTVILTIHQPS 222 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~~H~~~ 222 (646)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++.+.
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 344445556678999999998765 56667778888887753 4789999988653
No 495
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.03 E-value=1.9e-06 Score=84.28 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH--HHHHHHh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 039035 136 RVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS--IGVDIIH-GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210 (646)
Q Consensus 136 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--ia~~L~~-~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 210 (646)
.+.+.++..++.-. .+++ ....+|+||++++. +...+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~i---iv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVL---IVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEE---EEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 45556666665311 1111 23458999999977 4444433 34433 99999999999999999988764
No 496
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.03 E-value=2e-05 Score=79.35 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=43.7
Q ss_pred CCCEEEEeCC-----CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc--------HHHHhhcCeEEEEe
Q 039035 179 GPPLLFLDEP-----TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS--------SRIQLLLDHLIILA 236 (646)
Q Consensus 179 ~P~lllLDEP-----tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--------~~i~~~~D~v~~L~ 236 (646)
+++++++|-. +.+.|...+..+.++++.+++.|.|+++++|... ..+..+||.+++|+
T Consensus 107 ~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 6788899942 2345566777888899999888999999999631 22466889998884
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.02 E-value=5.8e-06 Score=80.86 Aligned_cols=37 Identities=32% Similarity=0.553 Sum_probs=30.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECC
Confidence 789999999999999999999997643 4667776554
No 498
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.01 E-value=1.2e-05 Score=69.16 Aligned_cols=48 Identities=29% Similarity=0.445 Sum_probs=37.1
Q ss_pred CCCCChHHH-HHHHHHHHHH------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 039035 159 TRGVSGGER-RRVSIGVDII------H------GPPLLFLDEPTSGLDSTSAYSVIEKVHN 206 (646)
Q Consensus 159 ~~~LSgGer-qRv~ia~~L~------~------~P~lllLDEPtsgLD~~~~~~i~~~l~~ 206 (646)
..++||||| ..+.++.+++ . .|++++||||+++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 457999999 4444444332 2 3789999999999999999999999874
No 499
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.01 E-value=0.00017 Score=73.35 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=34.5
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHH-cCCEEEEEecCCc
Q 039035 177 IHGPPLLFLDEPTSGLDSTSAYSVIE-KVHNIAR-SGSTVILTIHQPS 222 (646)
Q Consensus 177 ~~~P~lllLDEPtsgLD~~~~~~i~~-~l~~l~~-~g~tii~~~H~~~ 222 (646)
+++-.++|+||+-.|=++.....+.. .++.+.+ .+..++++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 34567999999999999999888765 4456776 4889999999863
No 500
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.99 E-value=9.2e-06 Score=76.41 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH-----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 039035 135 QRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI-----IHGPPLLFLDEPTSGLDSTSAYSVIEKVHNI 207 (646)
Q Consensus 135 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L-----~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l 207 (646)
.++.++++..+..- ..+.+ +...++++++++....... ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34556666665321 11111 1235788888877665553 2345555 99999999999999888764
Done!