Query 039035
Match_columns 646
No_of_seqs 412 out of 2747
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.5E-50 1.2E-54 427.4 29.1 223 11-251 24-253 (366)
2 3tif_A Uncharacterized ABC tra 100.0 9.8E-50 3.3E-54 403.0 27.6 222 11-249 1-232 (235)
3 3rlf_A Maltose/maltodextrin im 100.0 1.6E-49 5.6E-54 424.7 30.1 219 11-251 3-223 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 8.9E-50 3.1E-54 411.7 26.5 220 11-251 7-233 (275)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 7.7E-50 2.6E-54 424.5 26.5 219 11-251 4-228 (359)
6 2olj_A Amino acid ABC transpor 100.0 3.6E-49 1.2E-53 404.8 29.1 219 11-251 24-248 (263)
7 1b0u_A Histidine permease; ABC 100.0 4E-49 1.4E-53 404.9 28.4 219 11-251 6-242 (262)
8 1z47_A CYSA, putative ABC-tran 100.0 1.2E-48 4E-53 415.6 29.5 221 10-251 13-235 (355)
9 2pcj_A ABC transporter, lipopr 100.0 1.1E-48 3.8E-53 392.6 27.5 212 11-245 4-222 (224)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-48 4.5E-53 399.2 28.0 219 11-251 15-235 (256)
11 4g1u_C Hemin import ATP-bindin 100.0 8.3E-49 2.8E-53 403.1 26.3 225 2-250 2-236 (266)
12 1g6h_A High-affinity branched- 100.0 5.7E-49 2E-53 402.8 24.1 218 11-248 7-239 (257)
13 2it1_A 362AA long hypothetical 100.0 2.1E-48 7.1E-53 415.1 28.9 219 11-251 3-223 (362)
14 2yyz_A Sugar ABC transporter, 100.0 1.6E-48 5.4E-53 415.6 27.5 219 11-251 3-223 (359)
15 1g29_1 MALK, maltose transport 100.0 3.4E-48 1.2E-52 415.5 30.1 219 11-251 3-229 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-48 4E-53 416.6 25.4 219 11-251 3-230 (353)
17 1v43_A Sugar-binding transport 100.0 3.4E-48 1.2E-52 414.9 26.5 219 11-251 11-231 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 4.7E-48 1.6E-52 392.0 25.7 217 11-250 6-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-48 1.9E-52 410.1 25.4 214 11-250 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.2E-47 4.1E-52 388.6 24.4 213 12-251 2-216 (240)
21 2yz2_A Putative ABC transporte 100.0 1.4E-47 4.7E-52 394.4 24.2 223 11-251 2-227 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.3E-47 4.5E-52 396.7 21.1 219 11-249 21-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 9.1E-47 3.1E-51 384.9 23.7 218 11-248 3-230 (250)
24 2zu0_C Probable ATP-dependent 100.0 3.1E-46 1.1E-50 384.4 26.8 221 11-250 20-253 (267)
25 3nh6_A ATP-binding cassette SU 100.0 3E-46 1E-50 390.4 23.2 216 10-251 52-277 (306)
26 2nq2_C Hypothetical ABC transp 100.0 1.3E-45 4.5E-50 376.6 27.1 209 11-249 4-215 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 3.9E-46 1.3E-50 379.4 22.9 216 11-250 7-231 (247)
28 2ixe_A Antigen peptide transpo 100.0 4.8E-46 1.6E-50 383.7 20.9 220 10-251 15-245 (271)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-45 7.3E-50 374.0 23.7 207 11-249 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 7.6E-46 2.6E-50 376.6 19.0 217 11-251 1-226 (243)
31 1sgw_A Putative ABC transporte 100.0 1.5E-45 5E-50 366.6 16.7 201 11-240 10-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 1.1E-44 3.6E-49 371.6 22.9 211 11-250 1-214 (263)
33 2ghi_A Transport protein; mult 100.0 9.6E-45 3.3E-49 371.9 22.2 217 10-251 16-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 8.3E-45 2.8E-49 391.0 15.2 218 8-251 16-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.3E-43 4.6E-48 356.8 21.5 205 10-250 5-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.8E-43 6.3E-48 357.6 20.4 208 11-251 3-217 (237)
37 2yl4_A ATP-binding cassette SU 100.0 9.6E-43 3.3E-47 397.3 22.5 220 10-250 339-569 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 1.6E-42 5.4E-47 394.5 22.7 218 10-251 340-567 (582)
39 3b60_A Lipid A export ATP-bind 100.0 2.4E-42 8.1E-47 393.1 23.9 218 10-251 340-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 1.8E-42 6.2E-47 393.7 22.3 217 10-251 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-42 5.9E-47 394.1 21.3 217 10-251 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 4.2E-42 1.4E-46 391.9 19.5 216 10-251 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 6.8E-41 2.3E-45 347.9 17.2 200 10-250 39-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 3.6E-41 1.2E-45 413.8 17.6 221 9-251 1074-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 6.9E-40 2.4E-44 402.4 21.4 219 9-251 413-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 6.6E-39 2.3E-43 392.8 23.2 219 9-251 385-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.5E-38 5.2E-43 389.6 22.9 221 9-251 1028-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 5E-37 1.7E-41 348.7 22.4 204 11-251 357-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4.8E-37 1.6E-41 345.2 20.4 204 11-251 287-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2E-36 6.9E-41 339.5 20.1 205 11-250 269-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-35 4.2E-40 343.2 16.6 208 35-250 30-297 (670)
52 3j16_B RLI1P; ribosome recycli 100.0 6.2E-35 2.1E-39 331.0 20.0 192 37-252 361-560 (608)
53 3bk7_A ABC transporter ATP-bin 100.0 1.2E-35 4.1E-40 337.4 11.2 194 15-239 95-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-35 5.3E-40 333.0 11.4 198 11-239 20-235 (538)
55 2iw3_A Elongation factor 3A; a 100.0 7.2E-34 2.5E-38 333.5 23.9 198 11-251 435-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 2.2E-34 7.4E-39 337.9 14.6 206 11-245 671-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-32 3.6E-37 318.7 19.8 197 36-250 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 3.1E-32 1.1E-36 308.9 12.3 188 37-242 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-32 8.7E-37 306.2 10.0 175 46-241 22-216 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 4.7E-30 1.6E-34 298.7 21.3 208 11-250 502-826 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 2.1E-30 7E-35 301.9 18.2 198 38-250 639-941 (972)
62 3pih_A Uvrabc system protein A 100.0 1.7E-29 5.7E-34 296.3 24.3 202 36-251 597-902 (916)
63 2ygr_A Uvrabc system protein A 100.0 1.5E-29 5.2E-34 295.7 19.4 199 38-251 657-960 (993)
64 4aby_A DNA repair protein RECN 100.0 1.2E-28 4.2E-33 268.7 18.9 204 36-244 48-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 9.1E-32 3.1E-36 296.1 -7.7 186 39-249 128-336 (460)
66 3b85_A Phosphate starvation-in 99.9 1.5E-29 5.2E-34 250.3 -12.3 142 34-222 11-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-25 6.1E-30 239.8 16.5 84 157-242 275-364 (365)
68 1e69_A Chromosome segregation 99.9 2.1E-25 7.3E-30 235.4 12.3 88 158-248 216-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 1.4E-27 4.8E-32 258.5 -10.5 171 36-233 36-248 (413)
70 4gp7_A Metallophosphoesterase; 99.9 1.3E-25 4.6E-30 215.2 3.6 143 41-222 1-160 (171)
71 1ye8_A Protein THEP1, hypothet 99.9 3.2E-24 1.1E-28 207.0 4.8 146 51-242 2-159 (178)
72 2v9p_A Replication protein E1; 99.9 1.3E-27 4.4E-32 248.9 -20.6 169 11-255 101-270 (305)
73 1znw_A Guanylate kinase, GMP k 99.9 7.8E-27 2.7E-31 230.6 -16.7 181 35-237 8-203 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 3.9E-24 1.3E-28 223.4 0.6 174 39-240 90-284 (302)
75 2dpy_A FLII, flagellum-specifi 99.9 9.9E-25 3.4E-29 238.8 -9.1 192 11-250 131-343 (438)
76 3sop_A Neuronal-specific septi 99.9 8.4E-24 2.9E-28 217.5 -1.7 147 51-221 4-150 (270)
77 2o5v_A DNA replication and rep 99.9 2.8E-21 9.5E-26 206.0 13.9 86 156-249 259-354 (359)
78 2og2_A Putative signal recogni 99.8 6.4E-23 2.2E-27 218.3 1.0 173 40-240 148-341 (359)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.3E-22 4.3E-27 214.6 2.4 132 38-240 160-292 (330)
80 1cr0_A DNA primase/helicase; R 99.8 3.2E-22 1.1E-26 208.2 4.6 186 35-240 21-237 (296)
81 1z6g_A Guanylate kinase; struc 99.8 3.3E-25 1.1E-29 220.9 -20.8 175 36-232 10-204 (218)
82 2vf7_A UVRA2, excinuclease ABC 99.8 4.5E-20 1.5E-24 215.0 18.2 111 132-250 355-474 (842)
83 3qkt_A DNA double-strand break 99.8 8.7E-20 3E-24 193.8 18.2 78 157-236 244-327 (339)
84 4ad8_A DNA repair protein RECN 99.8 1.5E-20 5.2E-25 210.7 12.8 78 158-238 393-473 (517)
85 2jeo_A Uridine-cytidine kinase 99.8 4.6E-22 1.6E-26 201.5 -0.5 171 34-239 10-180 (245)
86 3aez_A Pantothenate kinase; tr 99.8 1.8E-23 6.2E-28 219.3 -11.3 123 46-194 87-209 (312)
87 3pih_A Uvrabc system protein A 99.8 1.2E-20 4E-25 221.6 10.2 163 64-251 383-560 (916)
88 1tf7_A KAIC; homohexamer, hexa 99.8 8.9E-23 3E-27 229.3 -11.1 170 35-239 24-211 (525)
89 2obl_A ESCN; ATPase, hydrolase 99.8 2.2E-21 7.7E-26 206.1 -0.1 193 11-250 45-254 (347)
90 2o8b_B DNA mismatch repair pro 99.8 1.1E-20 3.9E-25 225.2 3.1 173 11-248 750-939 (1022)
91 1tf7_A KAIC; homohexamer, hexa 99.8 8.1E-20 2.8E-24 205.2 9.2 156 43-239 275-444 (525)
92 2ehv_A Hypothetical protein PH 99.8 7.4E-21 2.5E-25 191.8 -0.4 170 38-237 18-207 (251)
93 3thx_A DNA mismatch repair pro 99.8 2.9E-19 9.8E-24 210.8 11.6 152 35-249 648-811 (934)
94 2r6f_A Excinuclease ABC subuni 99.8 1.2E-18 4.1E-23 203.4 15.8 134 109-250 450-599 (972)
95 2eyu_A Twitching motility prot 99.8 1.1E-19 3.8E-24 185.8 4.0 132 37-237 15-147 (261)
96 2ygr_A Uvrabc system protein A 99.8 2E-18 6.8E-23 202.2 13.4 133 108-251 466-617 (993)
97 4a74_A DNA repair and recombin 99.7 1E-19 3.5E-24 181.1 0.8 159 38-239 13-201 (231)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.3E-18 7.7E-23 160.8 9.8 82 156-239 52-141 (148)
99 2qnr_A Septin-2, protein NEDD5 99.7 2.6E-20 8.9E-25 194.6 -6.6 164 15-222 2-168 (301)
100 1ewq_A DNA mismatch repair pro 99.7 7.1E-19 2.4E-23 203.9 2.8 146 35-244 565-717 (765)
101 3thx_B DNA mismatch repair pro 99.7 5.9E-18 2E-22 199.0 9.9 155 35-242 659-816 (918)
102 1w1w_A Structural maintenance 99.7 1.9E-17 6.4E-22 181.4 13.3 76 160-237 332-411 (430)
103 3asz_A Uridine kinase; cytidin 99.7 1.2E-20 4.2E-25 186.0 -10.9 146 46-222 3-162 (211)
104 3szr_A Interferon-induced GTP- 99.7 7.3E-20 2.5E-24 208.6 -6.8 192 11-251 10-237 (608)
105 1rj9_A FTSY, signal recognitio 99.7 3.7E-19 1.2E-23 185.8 -1.9 148 48-221 101-258 (304)
106 1wb9_A DNA mismatch repair pro 99.7 2.5E-18 8.4E-23 200.5 2.8 158 35-246 594-753 (800)
107 2w0m_A SSO2452; RECA, SSPF, un 99.7 4.4E-18 1.5E-22 169.2 3.2 169 35-238 8-192 (235)
108 1pzn_A RAD51, DNA repair and r 99.7 1.2E-18 4E-23 185.7 -2.6 166 37-245 118-309 (349)
109 2i3b_A HCR-ntpase, human cance 99.7 1.9E-19 6.6E-24 175.2 -7.9 157 49-244 1-169 (189)
110 3jvv_A Twitching mobility prot 99.7 3.4E-17 1.1E-21 174.5 5.2 128 45-238 119-246 (356)
111 1pui_A ENGB, probable GTP-bind 99.7 2.3E-18 7.8E-23 168.9 -3.5 176 11-213 3-202 (210)
112 1nlf_A Regulatory protein REPA 99.7 1.7E-16 5.7E-21 163.7 10.2 157 39-222 20-182 (279)
113 2qag_C Septin-7; cell cycle, c 99.6 9E-18 3.1E-22 182.3 -3.7 166 8-221 8-177 (418)
114 1s96_A Guanylate kinase, GMP k 99.6 1.3E-17 4.4E-22 166.1 -2.7 151 41-253 8-162 (219)
115 2bdt_A BH3686; alpha-beta prot 99.6 1.1E-18 3.8E-23 169.0 -15.3 170 49-250 2-183 (189)
116 2cvh_A DNA repair and recombin 99.6 1.1E-15 3.7E-20 150.8 5.9 155 36-238 6-185 (220)
117 3kta_B Chromosome segregation 99.5 2E-14 6.8E-19 137.5 10.4 78 159-239 62-145 (173)
118 2ewv_A Twitching motility prot 99.5 1.4E-15 4.8E-20 163.2 2.4 130 38-236 127-257 (372)
119 2qag_B Septin-6, protein NEDD5 99.5 4.6E-16 1.6E-20 168.3 -1.9 171 39-220 30-218 (427)
120 1zp6_A Hypothetical protein AT 99.5 2.5E-17 8.4E-22 159.4 -11.0 153 45-219 5-159 (191)
121 2gza_A Type IV secretion syste 99.5 3.3E-15 1.1E-19 159.8 3.8 138 38-239 164-303 (361)
122 2bbw_A Adenylate kinase 4, AK4 99.5 1.5E-17 5E-22 168.3 -14.4 151 48-210 26-199 (246)
123 1lw7_A Transcriptional regulat 99.5 8E-18 2.7E-22 180.4 -18.4 166 38-237 157-343 (365)
124 1nij_A Hypothetical protein YJ 99.5 7.1E-18 2.4E-22 177.5 -19.8 161 49-230 4-197 (318)
125 2rcn_A Probable GTPase ENGC; Y 99.5 2.1E-14 7E-19 152.4 6.3 122 38-176 205-328 (358)
126 1n0w_A DNA repair protein RAD5 99.5 6.6E-14 2.3E-18 140.1 9.5 155 38-239 12-210 (243)
127 1htw_A HI0065; nucleotide-bind 99.5 2.5E-15 8.5E-20 141.8 -1.3 79 35-119 19-97 (158)
128 2yhs_A FTSY, cell division pro 99.4 4.4E-15 1.5E-19 162.6 -2.3 154 39-220 283-448 (503)
129 2f1r_A Molybdopterin-guanine d 99.4 5.3E-16 1.8E-20 148.3 -8.5 139 50-212 3-164 (171)
130 3auy_A DNA double-strand break 99.4 5.2E-13 1.8E-17 143.3 11.7 78 157-237 276-360 (371)
131 2kjq_A DNAA-related protein; s 99.4 8.2E-14 2.8E-18 130.1 4.6 96 37-223 29-127 (149)
132 3ec2_A DNA replication protein 99.4 8.8E-14 3E-18 133.4 4.5 114 43-224 32-146 (180)
133 3e70_C DPA, signal recognition 99.4 5.1E-14 1.7E-18 148.3 2.9 164 46-241 126-307 (328)
134 2qm8_A GTPase/ATPase; G protei 99.4 1.3E-15 4.5E-20 161.4 -10.6 163 36-209 42-260 (337)
135 2yv5_A YJEQ protein; hydrolase 99.3 3.9E-14 1.3E-18 147.8 -2.2 121 46-175 162-301 (302)
136 1udx_A The GTP-binding protein 99.3 1.8E-14 6E-19 156.3 -5.5 168 39-232 147-319 (416)
137 1odf_A YGR205W, hypothetical 3 99.3 6.8E-14 2.3E-18 145.0 -2.3 132 46-196 28-169 (290)
138 1sxj_E Activator 1 40 kDa subu 99.3 1.1E-12 3.8E-17 139.0 6.8 144 52-231 39-184 (354)
139 2oap_1 GSPE-2, type II secreti 99.3 5.9E-15 2E-19 164.3 -12.8 176 36-230 247-458 (511)
140 3lda_A DNA repair protein RAD5 99.3 8.6E-12 3E-16 134.6 11.5 155 38-239 166-364 (400)
141 1p9r_A General secretion pathw 99.3 2.1E-14 7.3E-19 155.9 -10.6 135 36-184 156-314 (418)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 7.9E-15 2.7E-19 157.7 -14.5 169 45-248 16-210 (392)
143 3c8u_A Fructokinase; YP_612366 99.2 6.2E-14 2.1E-18 138.0 -10.1 162 46-252 19-182 (208)
144 1t9h_A YLOQ, probable GTPase E 99.1 1.8E-12 6.1E-17 134.9 -2.4 117 44-168 168-302 (307)
145 1in4_A RUVB, holliday junction 99.1 2E-13 6.8E-18 144.4 -10.5 166 36-231 31-211 (334)
146 1u0l_A Probable GTPase ENGC; p 99.1 4.5E-12 1.5E-16 132.1 -1.1 108 44-164 164-294 (301)
147 2r6a_A DNAB helicase, replicat 99.1 4.6E-11 1.6E-15 131.5 6.7 182 35-240 189-401 (454)
148 1lvg_A Guanylate kinase, GMP k 99.1 8.5E-15 2.9E-19 143.2 -20.8 57 172-237 116-173 (198)
149 2dr3_A UPF0273 protein PH0284; 99.1 6.3E-12 2.2E-16 125.8 -0.5 60 178-237 127-196 (247)
150 2x8a_A Nuclear valosin-contain 99.1 3.9E-14 1.3E-18 145.7 -17.4 129 35-190 32-164 (274)
151 1vma_A Cell division protein F 99.0 1.4E-10 4.6E-15 120.9 5.4 114 41-208 96-212 (306)
152 2zr9_A Protein RECA, recombina 99.0 1.1E-09 3.7E-14 116.4 9.5 155 37-245 47-237 (349)
153 1sq5_A Pantothenate kinase; P- 99.0 3.8E-11 1.3E-15 125.4 -1.6 84 37-124 49-156 (308)
154 2ius_A DNA translocase FTSK; n 98.9 2.2E-11 7.4E-16 134.8 -4.5 163 41-222 159-343 (512)
155 1ls1_A Signal recognition part 98.9 1.7E-09 5.8E-14 112.2 10.1 118 40-207 91-209 (295)
156 3lnc_A Guanylate kinase, GMP k 98.9 1.8E-13 6.2E-18 136.7 -20.1 40 36-75 14-54 (231)
157 2px0_A Flagellar biosynthesis 98.9 9.6E-10 3.3E-14 114.1 7.1 141 47-243 103-247 (296)
158 3euj_A Chromosome partition pr 98.9 3.6E-10 1.2E-14 124.2 1.7 52 36-90 17-68 (483)
159 3tr0_A Guanylate kinase, GMP k 98.8 1.9E-10 6.4E-15 111.9 -2.7 68 43-116 1-71 (205)
160 1iy2_A ATP-dependent metallopr 98.8 3.4E-12 1.1E-16 131.2 -16.1 123 36-182 62-190 (278)
161 1oix_A RAS-related protein RAB 98.8 6.5E-10 2.2E-14 107.3 0.2 141 51-207 31-189 (191)
162 3k1j_A LON protease, ATP-depen 98.8 1.1E-10 3.8E-15 133.0 -6.3 160 35-206 46-227 (604)
163 1ixz_A ATP-dependent metallopr 98.8 5.6E-12 1.9E-16 127.6 -16.2 127 36-188 38-170 (254)
164 1qhl_A Protein (cell division 98.7 6.3E-10 2.1E-14 110.9 -2.9 59 43-104 22-91 (227)
165 3hr8_A Protein RECA; alpha and 98.6 1.4E-08 4.7E-13 107.8 4.7 77 37-115 47-126 (356)
166 3kta_A Chromosome segregation 98.6 2.9E-09 9.8E-14 101.7 -1.9 39 37-76 13-53 (182)
167 2f9l_A RAB11B, member RAS onco 98.5 3.9E-08 1.3E-12 95.1 3.8 37 170-208 130-166 (199)
168 2qtf_A Protein HFLX, GTP-bindi 98.5 8.6E-09 2.9E-13 110.0 -2.0 150 48-209 177-353 (364)
169 2ce7_A Cell division protein F 98.5 1.4E-07 4.8E-12 103.8 7.6 59 164-222 93-165 (476)
170 4eun_A Thermoresistant glucoki 98.4 6.8E-09 2.3E-13 101.0 -3.8 59 41-105 21-81 (200)
171 2xau_A PRE-mRNA-splicing facto 98.4 4.3E-07 1.5E-11 106.1 8.2 73 159-232 188-262 (773)
172 4a1f_A DNAB helicase, replicat 98.4 3.6E-07 1.2E-11 96.1 6.5 131 35-219 32-164 (338)
173 3nwj_A ATSK2; P loop, shikimat 98.3 5.1E-08 1.8E-12 98.5 -0.6 52 11-73 17-72 (250)
174 3uie_A Adenylyl-sulfate kinase 98.3 1.5E-08 5E-13 98.6 -5.3 53 34-89 10-64 (200)
175 2j41_A Guanylate kinase; GMP, 98.3 2.1E-07 7.1E-12 90.2 2.2 32 45-76 2-33 (207)
176 3bh0_A DNAB-like replicative h 98.3 3E-06 1E-10 88.5 10.8 37 35-71 54-90 (315)
177 1zu4_A FTSY; GTPase, signal re 98.3 1.9E-07 6.4E-12 97.8 1.6 78 39-118 95-185 (320)
178 4e22_A Cytidylate kinase; P-lo 98.2 6.5E-08 2.2E-12 97.8 -2.2 64 37-105 18-96 (252)
179 2e87_A Hypothetical protein PH 98.2 2.4E-06 8.1E-11 90.8 8.3 61 160-222 230-293 (357)
180 2dhr_A FTSH; AAA+ protein, hex 98.2 1E-08 3.5E-13 113.6 -10.8 129 36-190 53-187 (499)
181 3a00_A Guanylate kinase, GMP k 98.2 3.5E-07 1.2E-11 87.8 1.3 27 49-75 1-27 (186)
182 1jjv_A Dephospho-COA kinase; P 98.1 3.1E-07 1E-11 89.4 0.1 137 51-253 4-141 (206)
183 2z4s_A Chromosomal replication 98.1 1.3E-06 4.4E-11 95.5 4.2 94 178-273 193-294 (440)
184 1fnn_A CDC6P, cell division co 98.1 9.3E-06 3.2E-10 86.2 10.5 44 178-222 124-170 (389)
185 3t34_A Dynamin-related protein 98.1 8.4E-06 2.9E-10 86.5 10.0 57 162-219 155-212 (360)
186 2dy1_A Elongation factor G; tr 98.0 1.2E-06 4.2E-11 100.6 2.3 132 43-222 3-137 (665)
187 3vaa_A Shikimate kinase, SK; s 98.0 2.1E-06 7.4E-11 83.1 3.5 39 35-73 11-49 (199)
188 1v5w_A DMC1, meiotic recombina 98.0 2.4E-05 8.2E-10 82.6 11.6 144 39-221 111-274 (343)
189 2vp4_A Deoxynucleoside kinase; 97.9 1.4E-06 4.8E-11 86.6 0.6 42 42-89 13-54 (230)
190 1kgd_A CASK, peripheral plasma 97.9 3.5E-06 1.2E-10 80.3 3.3 38 47-85 3-40 (180)
191 2z43_A DNA repair and recombin 97.9 5.3E-05 1.8E-09 79.2 11.8 144 38-220 95-257 (324)
192 3b9p_A CG5977-PA, isoform A; A 97.9 6.9E-05 2.3E-09 76.8 12.4 73 163-235 97-186 (297)
193 1ega_A Protein (GTP-binding pr 97.8 1.4E-05 4.7E-10 82.8 6.2 152 49-233 8-170 (301)
194 3tau_A Guanylate kinase, GMP k 97.8 9.5E-06 3.2E-10 79.2 4.0 29 47-75 6-34 (208)
195 3kl4_A SRP54, signal recogniti 97.8 4.4E-05 1.5E-09 82.8 8.6 125 48-220 96-223 (433)
196 1svm_A Large T antigen; AAA+ f 97.8 4.6E-06 1.6E-10 89.1 0.9 44 36-84 156-199 (377)
197 1rz3_A Hypothetical protein rb 97.8 4.6E-06 1.6E-10 81.0 0.7 42 45-88 18-59 (201)
198 1knq_A Gluconate kinase; ALFA/ 97.7 6.8E-06 2.3E-10 77.5 1.6 37 47-89 6-42 (175)
199 3ney_A 55 kDa erythrocyte memb 97.7 9.2E-06 3.2E-10 78.8 2.5 29 46-74 16-44 (197)
200 2qt1_A Nicotinamide riboside k 97.7 1.9E-05 6.4E-10 76.7 4.6 30 44-73 16-45 (207)
201 3tqc_A Pantothenate kinase; bi 97.7 4.8E-06 1.7E-10 87.0 -0.4 41 35-75 72-118 (321)
202 2qby_A CDC6 homolog 1, cell di 97.7 8.8E-06 3E-10 86.0 1.2 28 47-74 43-70 (386)
203 2q6t_A DNAB replication FORK h 97.6 0.0003 1E-08 76.7 12.9 171 36-237 187-397 (444)
204 3cr8_A Sulfate adenylyltranfer 97.6 1.1E-05 3.7E-10 90.4 1.2 42 45-88 365-408 (552)
205 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4.7E-05 1.6E-09 70.3 4.4 30 40-70 15-44 (149)
206 1cke_A CK, MSSA, protein (cyti 97.5 4.2E-06 1.4E-10 82.3 -3.4 55 49-105 5-74 (227)
207 1kag_A SKI, shikimate kinase I 97.5 3.2E-05 1.1E-09 72.5 2.7 27 48-74 3-29 (173)
208 3cf0_A Transitional endoplasmi 97.5 9.9E-05 3.4E-09 76.2 6.1 30 44-73 44-73 (301)
209 1ypw_A Transitional endoplasmi 97.5 8.2E-05 2.8E-09 87.3 6.0 31 44-74 233-263 (806)
210 2p67_A LAO/AO transport system 97.4 1.4E-05 4.8E-10 84.3 -0.9 51 36-88 43-93 (341)
211 2wjg_A FEOB, ferrous iron tran 97.4 6.4E-05 2.2E-09 71.0 3.6 22 51-72 9-30 (188)
212 3llm_A ATP-dependent RNA helic 97.4 2.7E-05 9.3E-10 77.3 0.5 67 163-231 162-229 (235)
213 2w58_A DNAI, primosome compone 97.4 0.00026 8.9E-09 68.1 7.5 24 50-73 55-78 (202)
214 1l8q_A Chromosomal replication 97.4 0.00016 5.5E-09 75.2 6.0 46 177-222 96-142 (324)
215 3ice_A Transcription terminati 97.4 2.5E-05 8.6E-10 82.8 -0.3 33 41-73 166-198 (422)
216 3m6a_A ATP-dependent protease 97.4 3.6E-05 1.2E-09 86.3 0.8 49 36-87 96-144 (543)
217 1u94_A RECA protein, recombina 97.3 0.00071 2.4E-08 71.6 10.6 35 38-72 50-86 (356)
218 2qag_A Septin-2, protein NEDD5 97.3 7.2E-06 2.5E-10 87.2 -5.0 57 11-87 17-73 (361)
219 4eaq_A DTMP kinase, thymidylat 97.3 7.4E-05 2.5E-09 74.1 2.4 44 38-84 12-58 (229)
220 1mky_A Probable GTP-binding pr 97.3 0.0002 7E-09 78.0 6.1 39 51-89 182-230 (439)
221 2www_A Methylmalonic aciduria 97.3 6.2E-05 2.1E-09 79.6 1.4 41 47-89 72-112 (349)
222 3bgw_A DNAB-like replicative h 97.2 0.00063 2.2E-08 74.2 8.8 36 36-71 184-219 (444)
223 2pez_A Bifunctional 3'-phospho 97.2 7.9E-05 2.7E-09 70.4 1.3 38 47-87 3-42 (179)
224 3qks_A DNA double-strand break 97.2 0.00021 7.1E-09 69.5 4.4 31 39-70 14-44 (203)
225 2i1q_A DNA repair and recombin 97.2 0.00099 3.4E-08 69.2 9.8 34 38-71 86-120 (322)
226 3lxx_A GTPase IMAP family memb 97.2 0.0017 5.8E-08 64.2 11.1 43 178-220 111-155 (239)
227 2gj8_A MNME, tRNA modification 97.1 0.00044 1.5E-08 64.7 5.8 27 47-73 2-28 (172)
228 3bos_A Putative DNA replicatio 97.1 0.00021 7.3E-09 70.0 3.5 45 178-222 103-149 (242)
229 2b8t_A Thymidine kinase; deoxy 97.1 0.00069 2.4E-08 66.9 7.1 53 179-236 89-150 (223)
230 3h4m_A Proteasome-activating n 97.1 0.00072 2.5E-08 68.6 7.2 28 46-73 48-75 (285)
231 1m7g_A Adenylylsulfate kinase; 97.0 0.00012 3.9E-09 71.4 0.7 42 44-87 20-63 (211)
232 1f6b_A SAR1; gtpases, N-termin 97.0 0.0002 6.8E-09 68.8 2.0 36 36-72 13-48 (198)
233 1m2o_B GTP-binding protein SAR 97.0 0.00049 1.7E-08 65.5 4.5 35 37-72 12-46 (190)
234 3cmw_A Protein RECA, recombina 96.9 0.0024 8.1E-08 79.5 10.8 29 45-73 728-756 (1706)
235 2qor_A Guanylate kinase; phosp 96.9 0.0004 1.4E-08 67.1 3.1 30 45-74 8-37 (204)
236 2ffh_A Protein (FFH); SRP54, s 96.9 0.00028 9.7E-09 76.3 1.9 47 40-90 91-137 (425)
237 1y63_A LMAJ004144AAA protein; 96.9 0.0005 1.7E-08 65.3 3.4 32 41-72 2-33 (184)
238 2v1u_A Cell division control p 96.8 0.00072 2.5E-08 71.2 4.4 27 47-73 42-68 (387)
239 3d8b_A Fidgetin-like protein 1 96.8 0.0059 2E-07 64.4 11.2 27 47-73 115-141 (357)
240 2wji_A Ferrous iron transport 96.8 0.0016 5.3E-08 60.3 5.9 24 51-74 5-28 (165)
241 2yvu_A Probable adenylyl-sulfa 96.7 0.00045 1.5E-08 65.6 2.0 31 45-75 9-39 (186)
242 1j8m_F SRP54, signal recogniti 96.7 0.00024 8.3E-09 73.3 -0.4 46 40-88 89-135 (297)
243 1q57_A DNA primase/helicase; d 96.7 0.013 4.5E-07 64.7 13.5 36 36-71 229-264 (503)
244 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00027 9.3E-09 74.3 -0.1 37 37-73 10-48 (359)
245 3auy_A DNA double-strand break 96.6 0.00088 3E-08 71.2 3.7 32 38-70 15-46 (371)
246 2if2_A Dephospho-COA kinase; a 96.6 0.00076 2.6E-08 64.9 2.9 21 51-71 3-23 (204)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0054 1.8E-07 61.0 9.2 27 47-73 37-63 (262)
248 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00094 3.2E-08 71.4 3.6 44 42-87 15-69 (396)
249 2p5t_B PEZT; postsegregational 96.6 0.00062 2.1E-08 68.3 2.0 45 38-87 22-66 (253)
250 1xp8_A RECA protein, recombina 96.6 0.0058 2E-07 64.8 9.5 34 38-71 61-96 (366)
251 2qgz_A Helicase loader, putati 96.5 0.0021 7E-08 66.6 5.5 51 177-227 212-264 (308)
252 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.022 7.6E-07 59.1 13.4 28 46-73 42-69 (322)
253 1np6_A Molybdopterin-guanine d 96.5 0.00097 3.3E-08 63.2 2.6 39 50-88 7-46 (174)
254 3t61_A Gluconokinase; PSI-biol 96.4 0.0012 4.2E-08 63.4 2.9 25 49-73 18-42 (202)
255 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.6E-08 61.3 3.5 26 47-72 2-27 (186)
256 1sxj_C Activator 1 40 kDa subu 96.4 0.00048 1.7E-08 72.1 -0.5 40 36-75 31-72 (340)
257 2r8r_A Sensor protein; KDPD, P 96.3 0.0027 9.4E-08 62.5 4.4 45 175-219 80-125 (228)
258 1lv7_A FTSH; alpha/beta domain 96.3 0.0017 5.7E-08 65.0 2.8 34 38-73 36-69 (257)
259 1qhx_A CPT, protein (chloramph 96.3 0.0024 8.1E-08 59.8 3.7 26 49-74 3-28 (178)
260 3kb2_A SPBC2 prophage-derived 96.3 0.0022 7.4E-08 59.4 3.4 23 51-73 3-25 (173)
261 3n70_A Transport activator; si 96.2 0.01 3.4E-07 53.9 7.6 43 179-223 76-118 (145)
262 1q3t_A Cytidylate kinase; nucl 96.2 0.0023 7.9E-08 63.3 3.5 29 45-73 12-40 (236)
263 2zej_A Dardarin, leucine-rich 96.2 0.0023 7.7E-08 60.3 3.1 23 51-73 4-26 (184)
264 3cmu_A Protein RECA, recombina 96.1 0.013 4.5E-07 73.9 10.5 36 37-72 369-406 (2050)
265 3io5_A Recombination and repai 96.1 0.0044 1.5E-07 64.1 5.1 27 44-71 24-51 (333)
266 3r20_A Cytidylate kinase; stru 96.1 0.003 1E-07 62.7 3.5 25 49-73 9-33 (233)
267 1kht_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 59.2 3.6 25 49-73 3-27 (192)
268 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0095 3.2E-07 61.8 7.1 28 44-71 118-145 (331)
269 3cmw_A Protein RECA, recombina 96.0 0.019 6.5E-07 71.6 10.9 35 37-71 369-405 (1706)
270 2rhm_A Putative kinase; P-loop 96.0 0.0032 1.1E-07 59.6 3.2 27 47-73 3-29 (193)
271 2ze6_A Isopentenyl transferase 96.0 0.0034 1.2E-07 62.9 3.4 24 50-73 2-25 (253)
272 1xx6_A Thymidine kinase; NESG, 96.0 0.0089 3.1E-07 57.4 6.1 53 179-236 81-142 (191)
273 1ex7_A Guanylate kinase; subst 95.9 0.0035 1.2E-07 60.0 3.2 23 51-73 3-25 (186)
274 1gvn_B Zeta; postsegregational 95.8 0.0044 1.5E-07 63.4 3.7 37 46-86 30-66 (287)
275 1vht_A Dephospho-COA kinase; s 95.8 0.0047 1.6E-07 60.0 3.6 24 48-71 3-26 (218)
276 3trf_A Shikimate kinase, SK; a 95.8 0.0048 1.6E-07 58.1 3.5 26 48-73 4-29 (185)
277 3lw7_A Adenylate kinase relate 95.8 0.0045 1.5E-07 57.1 3.3 19 51-69 3-21 (179)
278 2v54_A DTMP kinase, thymidylat 95.8 0.0053 1.8E-07 58.6 3.8 26 48-73 3-28 (204)
279 3iij_A Coilin-interacting nucl 95.8 0.0045 1.5E-07 58.1 3.1 26 47-72 9-34 (180)
280 2jaq_A Deoxyguanosine kinase; 95.7 0.0052 1.8E-07 58.5 3.4 23 51-73 2-24 (205)
281 2plr_A DTMP kinase, probable t 95.7 0.0059 2E-07 58.5 3.8 27 48-74 3-29 (213)
282 2j9r_A Thymidine kinase; TK1, 95.6 0.026 9E-07 55.0 8.1 53 179-236 101-162 (214)
283 1ly1_A Polynucleotide kinase; 95.6 0.0067 2.3E-07 56.5 3.6 22 50-71 3-24 (181)
284 2wwf_A Thymidilate kinase, put 95.6 0.0064 2.2E-07 58.4 3.4 27 47-73 8-34 (212)
285 3vfd_A Spastin; ATPase, microt 95.6 0.063 2.2E-06 57.0 11.5 27 47-73 146-172 (389)
286 1gtv_A TMK, thymidylate kinase 95.5 0.0029 9.9E-08 61.0 0.8 24 51-74 2-25 (214)
287 2c95_A Adenylate kinase 1; tra 95.5 0.0064 2.2E-07 57.6 3.2 27 47-73 7-33 (196)
288 1via_A Shikimate kinase; struc 95.5 0.0066 2.2E-07 56.7 3.2 23 51-73 6-28 (175)
289 1xjc_A MOBB protein homolog; s 95.5 0.0068 2.3E-07 57.0 3.3 25 50-74 5-29 (169)
290 2qp9_X Vacuolar protein sortin 95.5 0.043 1.5E-06 57.7 9.7 27 47-73 82-108 (355)
291 3k53_A Ferrous iron transport 95.5 0.0058 2E-07 61.7 2.9 23 51-73 5-27 (271)
292 3ihw_A Centg3; RAS, centaurin, 95.5 0.013 4.5E-07 55.1 5.2 22 51-72 22-43 (184)
293 1uf9_A TT1252 protein; P-loop, 95.5 0.0072 2.4E-07 57.6 3.4 24 49-72 8-31 (203)
294 1nn5_A Similar to deoxythymidy 95.4 0.0075 2.5E-07 58.0 3.3 27 47-73 7-33 (215)
295 3co5_A Putative two-component 95.4 0.019 6.6E-07 51.9 5.9 42 179-221 75-116 (143)
296 1tev_A UMP-CMP kinase; ploop, 95.4 0.0092 3.2E-07 56.2 3.7 25 48-72 2-26 (196)
297 1nks_A Adenylate kinase; therm 95.3 0.0078 2.7E-07 56.6 3.1 23 51-73 3-25 (194)
298 1ko7_A HPR kinase/phosphatase; 95.3 0.011 3.9E-07 61.0 4.4 37 35-72 131-167 (314)
299 1jal_A YCHF protein; nucleotid 95.3 0.012 4.2E-07 62.1 4.7 36 49-86 2-48 (363)
300 2bwj_A Adenylate kinase 5; pho 95.3 0.0036 1.2E-07 59.5 0.6 28 46-73 9-36 (199)
301 2ged_A SR-beta, signal recogni 95.2 0.0084 2.9E-07 56.4 3.0 24 50-73 49-72 (193)
302 4ag6_A VIRB4 ATPase, type IV s 95.2 0.0062 2.1E-07 65.0 2.2 45 179-223 262-309 (392)
303 2nzj_A GTP-binding protein REM 95.2 0.01 3.5E-07 54.5 3.3 23 51-73 6-28 (175)
304 1z2a_A RAS-related protein RAB 95.2 0.0093 3.2E-07 54.3 3.0 23 51-73 7-29 (168)
305 2orv_A Thymidine kinase; TP4A 95.2 0.067 2.3E-06 52.7 9.2 53 178-236 89-150 (234)
306 2erx_A GTP-binding protein DI- 95.1 0.011 3.7E-07 54.0 3.3 23 51-73 5-27 (172)
307 1aky_A Adenylate kinase; ATP:A 95.1 0.012 4E-07 57.2 3.7 27 47-73 2-28 (220)
308 3q72_A GTP-binding protein RAD 95.1 0.0087 3E-07 54.6 2.5 22 52-73 5-26 (166)
309 2dyk_A GTP-binding protein; GT 95.1 0.011 3.7E-07 53.6 3.0 23 51-73 3-25 (161)
310 1kao_A RAP2A; GTP-binding prot 95.1 0.011 3.7E-07 53.7 3.0 23 51-73 5-27 (167)
311 3q85_A GTP-binding protein REM 95.0 0.012 4E-07 53.9 3.2 22 52-73 5-26 (169)
312 2z0h_A DTMP kinase, thymidylat 95.0 0.012 4.1E-07 55.7 3.4 23 51-73 2-24 (197)
313 1u8z_A RAS-related protein RAL 95.0 0.011 3.7E-07 53.7 3.0 23 51-73 6-28 (168)
314 3b1v_A Ferrous iron uptake tra 95.0 0.011 3.9E-07 59.9 3.3 23 51-73 5-27 (272)
315 3ake_A Cytidylate kinase; CMP 95.0 0.012 4E-07 56.3 3.2 23 51-73 4-26 (208)
316 2ce2_X GTPase HRAS; signaling 95.0 0.01 3.5E-07 53.7 2.6 22 52-73 6-27 (166)
317 2vli_A Antibiotic resistance p 95.0 0.0092 3.1E-07 55.9 2.3 26 48-73 4-29 (183)
318 3tw8_B RAS-related protein RAB 95.0 0.011 3.8E-07 54.5 2.9 23 51-73 11-33 (181)
319 1z0j_A RAB-22, RAS-related pro 95.0 0.012 4E-07 53.8 3.0 23 51-73 8-30 (170)
320 1z08_A RAS-related protein RAB 94.9 0.012 4.1E-07 53.8 3.0 23 51-73 8-30 (170)
321 3iev_A GTP-binding protein ERA 94.9 0.012 4.1E-07 60.7 3.3 26 47-73 9-34 (308)
322 1zd8_A GTP:AMP phosphotransfer 94.9 0.012 4.2E-07 57.4 3.2 27 47-73 5-31 (227)
323 1ek0_A Protein (GTP-binding pr 94.9 0.012 4.1E-07 53.6 3.0 22 52-73 6-27 (170)
324 1c1y_A RAS-related protein RAP 94.9 0.012 4.2E-07 53.4 3.0 22 52-73 6-27 (167)
325 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.013 4.3E-07 54.1 3.0 23 51-73 9-31 (177)
326 1fzq_A ADP-ribosylation factor 94.9 0.01 3.6E-07 55.6 2.5 22 51-72 18-39 (181)
327 1ky3_A GTP-binding protein YPT 94.9 0.013 4.4E-07 54.2 3.0 23 51-73 10-32 (182)
328 3lxw_A GTPase IMAP family memb 94.9 0.013 4.5E-07 58.3 3.3 24 51-74 23-46 (247)
329 1g16_A RAS-related protein SEC 94.8 0.011 3.9E-07 53.8 2.6 22 52-73 6-27 (170)
330 2lkc_A Translation initiation 94.8 0.017 5.8E-07 53.2 3.8 26 48-73 7-32 (178)
331 2cdn_A Adenylate kinase; phosp 94.8 0.016 5.6E-07 55.3 3.7 27 47-73 18-44 (201)
332 3dm5_A SRP54, signal recogniti 94.8 0.22 7.4E-06 53.9 12.9 27 48-74 99-125 (443)
333 1svi_A GTP-binding protein YSX 94.8 0.012 4.1E-07 55.4 2.7 23 51-73 25-47 (195)
334 1ukz_A Uridylate kinase; trans 94.8 0.017 5.7E-07 55.2 3.6 26 48-73 14-39 (203)
335 3pqc_A Probable GTP-binding pr 94.7 0.013 4.3E-07 54.9 2.7 23 51-73 25-47 (195)
336 3fb4_A Adenylate kinase; psych 94.7 0.016 5.5E-07 55.9 3.4 23 51-73 2-24 (216)
337 2pbr_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 54.5 3.4 23 51-73 2-24 (195)
338 2fn4_A P23, RAS-related protei 94.7 0.013 4.4E-07 54.1 2.6 23 51-73 11-33 (181)
339 1zak_A Adenylate kinase; ATP:A 94.7 0.013 4.5E-07 57.0 2.7 26 48-73 4-29 (222)
340 1r2q_A RAS-related protein RAB 94.7 0.015 5.1E-07 53.0 3.0 23 51-73 8-30 (170)
341 4dsu_A GTPase KRAS, isoform 2B 94.7 0.015 5.1E-07 54.1 3.0 23 51-73 6-28 (189)
342 2hxs_A RAB-26, RAS-related pro 94.7 0.017 5.7E-07 53.3 3.3 23 51-73 8-30 (178)
343 3clv_A RAB5 protein, putative; 94.7 0.015 5.2E-07 54.5 3.0 23 51-73 9-31 (208)
344 2cxx_A Probable GTP-binding pr 94.6 0.014 4.7E-07 54.5 2.7 22 52-73 4-25 (190)
345 1upt_A ARL1, ADP-ribosylation 94.6 0.016 5.3E-07 53.1 3.0 23 51-73 9-31 (171)
346 1e6c_A Shikimate kinase; phosp 94.6 0.015 5.2E-07 53.8 2.9 24 50-73 3-26 (173)
347 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.019 6.5E-07 57.6 3.8 26 48-73 3-28 (260)
348 2oil_A CATX-8, RAS-related pro 94.6 0.016 5.4E-07 54.6 3.0 23 51-73 27-49 (193)
349 1zuh_A Shikimate kinase; alpha 94.6 0.019 6.5E-07 53.1 3.5 24 50-73 8-31 (168)
350 1r8s_A ADP-ribosylation factor 94.6 0.016 5.6E-07 52.6 3.0 21 52-72 3-23 (164)
351 3bc1_A RAS-related protein RAB 94.6 0.016 5.5E-07 54.1 3.0 23 51-73 13-35 (195)
352 3dl0_A Adenylate kinase; phosp 94.5 0.019 6.4E-07 55.5 3.4 23 51-73 2-24 (216)
353 2pt5_A Shikimate kinase, SK; a 94.5 0.02 6.9E-07 52.7 3.5 23 51-73 2-24 (168)
354 3t1o_A Gliding protein MGLA; G 94.5 0.018 6.2E-07 53.9 3.2 25 51-75 16-40 (198)
355 2qmh_A HPR kinase/phosphorylas 94.5 0.03 1E-06 53.9 4.7 37 36-73 22-58 (205)
356 3cmu_A Protein RECA, recombina 94.5 0.063 2.2E-06 67.9 8.7 37 37-73 718-756 (2050)
357 1qf9_A UMP/CMP kinase, protein 94.5 0.019 6.5E-07 53.9 3.3 25 49-73 6-30 (194)
358 4fcw_A Chaperone protein CLPB; 94.5 0.013 4.4E-07 59.9 2.2 27 50-76 48-74 (311)
359 3tlx_A Adenylate kinase 2; str 94.5 0.022 7.4E-07 56.6 3.8 27 47-73 27-53 (243)
360 2g6b_A RAS-related protein RAB 94.5 0.018 6.1E-07 53.2 3.0 23 51-73 12-34 (180)
361 1moz_A ARL1, ADP-ribosylation 94.4 0.011 3.8E-07 54.9 1.5 24 48-71 17-40 (183)
362 2a9k_A RAS-related protein RAL 94.4 0.018 6.2E-07 53.4 3.0 23 51-73 20-42 (187)
363 1wf3_A GTP-binding protein; GT 94.4 0.02 6.7E-07 58.9 3.5 26 47-73 6-31 (301)
364 2iyv_A Shikimate kinase, SK; t 94.4 0.017 5.8E-07 54.2 2.7 24 50-73 3-26 (184)
365 1z0f_A RAB14, member RAS oncog 94.4 0.019 6.3E-07 52.9 3.0 23 51-73 17-39 (179)
366 2y8e_A RAB-protein 6, GH09086P 94.4 0.016 5.6E-07 53.2 2.6 23 51-73 16-38 (179)
367 3a8t_A Adenylate isopentenyltr 94.4 0.034 1.1E-06 58.0 5.1 27 47-73 38-64 (339)
368 3con_A GTPase NRAS; structural 94.4 0.019 6.5E-07 53.8 3.0 23 51-73 23-45 (190)
369 2efe_B Small GTP-binding prote 94.4 0.02 6.7E-07 53.0 3.0 23 51-73 14-36 (181)
370 3iby_A Ferrous iron transport 94.4 0.018 6E-07 57.8 2.9 23 51-73 3-25 (256)
371 3t5d_A Septin-7; GTP-binding p 94.4 0.016 5.5E-07 58.5 2.5 22 52-73 11-32 (274)
372 3bwd_D RAC-like GTP-binding pr 94.3 0.023 7.9E-07 52.6 3.4 23 51-73 10-32 (182)
373 1nrj_B SR-beta, signal recogni 94.3 0.019 6.6E-07 55.2 3.0 23 51-73 14-36 (218)
374 2bov_A RAla, RAS-related prote 94.3 0.02 7E-07 54.2 3.0 23 51-73 16-38 (206)
375 1ksh_A ARF-like protein 2; sma 94.3 0.021 7.3E-07 53.2 3.0 26 48-73 17-42 (186)
376 1vg8_A RAS-related protein RAB 94.2 0.021 7.2E-07 54.2 3.0 23 51-73 10-32 (207)
377 2gf9_A RAS-related protein RAB 94.2 0.021 7.2E-07 53.5 3.0 23 51-73 24-46 (189)
378 3cbq_A GTP-binding protein REM 94.2 0.017 5.8E-07 54.9 2.3 22 51-72 25-46 (195)
379 1jbk_A CLPB protein; beta barr 94.2 0.027 9.3E-07 52.2 3.7 27 47-73 41-67 (195)
380 2dby_A GTP-binding protein; GD 94.2 0.02 6.8E-07 60.7 3.0 21 52-72 4-24 (368)
381 2bme_A RAB4A, RAS-related prot 94.2 0.019 6.6E-07 53.4 2.6 23 51-73 12-34 (186)
382 3tkl_A RAS-related protein RAB 94.2 0.022 7.4E-07 53.5 3.0 23 51-73 18-40 (196)
383 3u61_B DNA polymerase accessor 94.2 0.09 3.1E-06 54.0 7.9 42 179-222 105-147 (324)
384 1uj2_A Uridine-cytidine kinase 94.2 0.025 8.5E-07 56.3 3.4 24 50-73 23-46 (252)
385 3kkq_A RAS-related protein M-R 94.1 0.023 7.9E-07 52.8 3.0 23 51-73 20-42 (183)
386 2gf0_A GTP-binding protein DI- 94.1 0.021 7E-07 53.8 2.6 23 51-73 10-32 (199)
387 2xtp_A GTPase IMAP family memb 94.1 0.022 7.4E-07 56.8 2.9 23 51-73 24-46 (260)
388 3a1s_A Iron(II) transport prot 94.1 0.024 8.3E-07 56.8 3.3 23 51-73 7-29 (258)
389 3v9p_A DTMP kinase, thymidylat 94.1 0.022 7.5E-07 56.2 2.9 29 45-73 21-49 (227)
390 1m7b_A RND3/RHOE small GTP-bin 94.1 0.021 7.1E-07 53.4 2.6 23 51-73 9-31 (184)
391 2grj_A Dephospho-COA kinase; T 94.1 0.027 9.2E-07 54.0 3.4 24 49-72 12-35 (192)
392 2fg5_A RAB-22B, RAS-related pr 94.1 0.021 7.2E-07 53.8 2.6 23 51-73 25-47 (192)
393 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.024 8.1E-07 52.6 3.0 23 51-73 7-29 (186)
394 1zbd_A Rabphilin-3A; G protein 94.1 0.026 8.8E-07 53.5 3.2 23 51-73 10-32 (203)
395 4edh_A DTMP kinase, thymidylat 94.1 0.031 1E-06 54.5 3.8 28 47-74 4-31 (213)
396 2cjw_A GTP-binding protein GEM 94.0 0.024 8.3E-07 53.7 3.0 22 51-72 8-29 (192)
397 2il1_A RAB12; G-protein, GDP, 94.0 0.024 8.1E-07 53.5 2.8 23 51-73 28-50 (192)
398 1z06_A RAS-related protein RAB 94.0 0.025 8.6E-07 53.0 3.0 23 51-73 22-44 (189)
399 3umf_A Adenylate kinase; rossm 94.0 0.025 8.7E-07 55.3 3.0 30 44-73 24-53 (217)
400 2xb4_A Adenylate kinase; ATP-b 94.0 0.029 9.9E-07 54.8 3.4 23 51-73 2-24 (223)
401 3i8s_A Ferrous iron transport 94.0 0.024 8.1E-07 57.4 2.9 23 51-73 5-27 (274)
402 2a5j_A RAS-related protein RAB 93.9 0.027 9.1E-07 53.0 3.0 23 51-73 23-45 (191)
403 3oes_A GTPase rhebl1; small GT 93.9 0.023 8E-07 53.9 2.6 23 51-73 26-48 (201)
404 3be4_A Adenylate kinase; malar 93.9 0.028 9.5E-07 54.6 3.2 26 48-73 4-29 (217)
405 2f7s_A C25KG, RAS-related prot 93.9 0.047 1.6E-06 52.3 4.8 24 51-74 27-50 (217)
406 2wsm_A Hydrogenase expression/ 93.9 0.026 8.8E-07 54.5 2.9 24 50-73 31-54 (221)
407 1a7j_A Phosphoribulokinase; tr 93.9 0.016 5.5E-07 59.3 1.5 26 48-73 4-29 (290)
408 4dhe_A Probable GTP-binding pr 93.9 0.014 5E-07 56.2 1.0 23 51-73 31-53 (223)
409 1zd9_A ADP-ribosylation factor 93.9 0.028 9.4E-07 52.8 3.0 23 51-73 24-46 (188)
410 2qu8_A Putative nucleolar GTP- 93.9 0.027 9.3E-07 54.8 3.0 22 51-72 31-52 (228)
411 3t5g_A GTP-binding protein RHE 93.9 0.025 8.5E-07 52.4 2.6 22 51-72 8-29 (181)
412 2o52_A RAS-related protein RAB 93.8 0.027 9.2E-07 53.6 2.9 23 51-73 27-49 (200)
413 1zj6_A ADP-ribosylation factor 93.8 0.027 9.3E-07 52.7 2.9 23 50-72 17-39 (187)
414 3dz8_A RAS-related protein RAB 93.8 0.025 8.5E-07 53.2 2.6 23 51-73 25-47 (191)
415 1x3s_A RAS-related protein RAB 93.8 0.028 9.6E-07 52.6 3.0 23 51-73 17-39 (195)
416 1jwy_B Dynamin A GTPase domain 93.8 0.026 9E-07 57.8 3.0 23 51-73 26-48 (315)
417 2atv_A RERG, RAS-like estrogen 93.8 0.029 9.8E-07 53.0 3.0 23 51-73 30-52 (196)
418 4bas_A ADP-ribosylation factor 93.8 0.028 9.6E-07 52.9 2.9 24 50-73 18-41 (199)
419 3reg_A RHO-like small GTPase; 93.8 0.029 9.8E-07 52.9 3.0 23 51-73 25-47 (194)
420 3llu_A RAS-related GTP-binding 93.8 0.028 9.4E-07 53.3 2.8 25 51-75 22-46 (196)
421 2h57_A ADP-ribosylation factor 93.8 0.021 7.3E-07 53.6 2.0 23 51-73 23-45 (190)
422 2p5s_A RAS and EF-hand domain 93.8 0.029 9.9E-07 53.2 3.0 24 50-73 29-52 (199)
423 2bcg_Y Protein YP2, GTP-bindin 93.8 0.025 8.7E-07 53.8 2.6 23 51-73 10-32 (206)
424 3cph_A RAS-related protein SEC 93.8 0.029 9.8E-07 53.5 3.0 24 50-73 21-44 (213)
425 1njg_A DNA polymerase III subu 93.8 0.011 3.7E-07 57.1 -0.1 42 179-222 126-167 (250)
426 2f6r_A COA synthase, bifunctio 93.8 0.029 1E-06 57.0 3.1 23 49-71 75-97 (281)
427 2fv8_A H6, RHO-related GTP-bin 93.7 0.031 1.1E-06 53.4 3.1 23 51-73 27-49 (207)
428 2h17_A ADP-ribosylation factor 93.7 0.025 8.7E-07 52.6 2.4 23 51-73 23-45 (181)
429 2ew1_A RAS-related protein RAB 93.7 0.027 9.2E-07 54.0 2.6 23 51-73 28-50 (201)
430 1ltq_A Polynucleotide kinase; 93.6 0.036 1.2E-06 56.4 3.6 23 50-72 3-25 (301)
431 3lv8_A DTMP kinase, thymidylat 93.6 0.034 1.2E-06 55.1 3.3 28 47-74 25-52 (236)
432 2iwr_A Centaurin gamma 1; ANK 93.6 0.025 8.6E-07 52.2 2.2 23 51-73 9-31 (178)
433 1ak2_A Adenylate kinase isoenz 93.6 0.04 1.4E-06 54.1 3.7 27 47-73 14-40 (233)
434 2q3h_A RAS homolog gene family 93.6 0.035 1.2E-06 52.5 3.2 24 50-73 21-44 (201)
435 3exa_A TRNA delta(2)-isopenten 93.6 0.04 1.4E-06 56.9 3.8 25 49-73 3-27 (322)
436 2p65_A Hypothetical protein PF 93.6 0.033 1.1E-06 51.6 2.9 27 47-73 41-67 (187)
437 3c5c_A RAS-like protein 12; GD 93.6 0.034 1.2E-06 52.2 3.0 23 51-73 23-45 (187)
438 1sky_E F1-ATPase, F1-ATP synth 93.6 0.039 1.3E-06 60.0 3.8 36 37-73 140-175 (473)
439 1e4v_A Adenylate kinase; trans 93.5 0.034 1.2E-06 53.7 3.0 22 52-73 3-24 (214)
440 3zvl_A Bifunctional polynucleo 93.5 0.037 1.3E-06 59.6 3.5 28 46-73 255-282 (416)
441 2aka_B Dynamin-1; fusion prote 93.5 0.03 1E-06 56.8 2.6 23 51-73 28-50 (299)
442 2fh5_B SR-beta, signal recogni 93.5 0.035 1.2E-06 53.1 3.0 23 51-73 9-31 (214)
443 3cnl_A YLQF, putative uncharac 93.5 0.037 1.3E-06 55.7 3.2 26 50-75 100-125 (262)
444 3d3q_A TRNA delta(2)-isopenten 93.5 0.038 1.3E-06 57.7 3.4 24 50-73 8-31 (340)
445 2j1l_A RHO-related GTP-binding 93.5 0.035 1.2E-06 53.5 2.9 23 51-73 36-58 (214)
446 1gwn_A RHO-related GTP-binding 93.4 0.032 1.1E-06 53.6 2.6 23 51-73 30-52 (205)
447 3tmk_A Thymidylate kinase; pho 93.4 0.04 1.4E-06 53.9 3.3 29 47-75 3-31 (216)
448 4tmk_A Protein (thymidylate ki 93.4 0.041 1.4E-06 53.7 3.3 27 48-74 2-28 (213)
449 2fu5_C RAS-related protein RAB 93.4 0.024 8.3E-07 52.6 1.6 23 51-73 10-32 (183)
450 2zts_A Putative uncharacterize 93.4 0.051 1.7E-06 53.2 4.1 36 35-70 15-51 (251)
451 2b6h_A ADP-ribosylation factor 93.3 0.033 1.1E-06 52.7 2.5 23 50-72 30-52 (192)
452 3ld9_A DTMP kinase, thymidylat 93.3 0.05 1.7E-06 53.5 3.8 28 47-74 19-46 (223)
453 2gco_A H9, RHO-related GTP-bin 93.3 0.035 1.2E-06 52.7 2.6 23 51-73 27-49 (201)
454 3def_A T7I23.11 protein; chlor 93.2 0.038 1.3E-06 55.3 2.9 23 51-73 38-60 (262)
455 2g3y_A GTP-binding protein GEM 93.2 0.046 1.6E-06 53.1 3.3 23 51-73 39-61 (211)
456 2ocp_A DGK, deoxyguanosine kin 93.2 0.047 1.6E-06 53.8 3.4 27 48-74 1-27 (241)
457 1h65_A Chloroplast outer envel 93.1 0.04 1.4E-06 55.4 2.9 23 51-73 41-63 (270)
458 3tqf_A HPR(Ser) kinase; transf 93.1 0.072 2.5E-06 50.1 4.3 34 37-71 5-38 (181)
459 3crm_A TRNA delta(2)-isopenten 93.1 0.049 1.7E-06 56.5 3.4 24 50-73 6-29 (323)
460 2atx_A Small GTP binding prote 93.1 0.04 1.4E-06 51.7 2.6 23 51-73 20-42 (194)
461 1p5z_B DCK, deoxycytidine kina 93.1 0.033 1.1E-06 55.7 2.1 27 47-73 22-48 (263)
462 2h92_A Cytidylate kinase; ross 92.9 0.048 1.6E-06 52.6 3.0 25 49-73 3-27 (219)
463 4djt_A GTP-binding nuclear pro 92.9 0.023 8E-07 54.6 0.7 23 51-73 13-35 (218)
464 1sxj_D Activator 1 41 kDa subu 92.9 0.021 7.2E-07 59.2 0.4 43 179-223 133-175 (353)
465 3cpj_B GTP-binding protein YPT 92.9 0.05 1.7E-06 52.6 3.0 23 51-73 15-37 (223)
466 3sr0_A Adenylate kinase; phosp 92.9 0.057 2E-06 52.3 3.4 23 51-73 2-24 (206)
467 3foz_A TRNA delta(2)-isopenten 92.8 0.063 2.1E-06 55.3 3.8 25 49-73 10-34 (316)
468 2r62_A Cell division protease 92.8 0.018 6.2E-07 57.5 -0.3 28 44-73 41-68 (268)
469 2hup_A RAS-related protein RAB 92.7 0.047 1.6E-06 51.9 2.6 23 51-73 31-53 (201)
470 2hf9_A Probable hydrogenase ni 92.7 0.05 1.7E-06 52.6 2.8 24 50-73 39-62 (226)
471 2x77_A ADP-ribosylation factor 92.7 0.033 1.1E-06 52.1 1.5 23 50-72 23-45 (189)
472 2yc2_C IFT27, small RAB-relate 92.7 0.025 8.4E-07 53.6 0.5 22 51-72 22-43 (208)
473 1ypw_A Transitional endoplasmi 92.5 0.024 8.2E-07 66.3 0.2 33 42-74 504-536 (806)
474 4dcu_A GTP-binding protein ENG 92.5 0.052 1.8E-06 59.1 2.8 52 166-221 89-141 (456)
475 3q3j_B RHO-related GTP-binding 92.5 0.06 2E-06 51.9 3.0 23 51-73 29-51 (214)
476 4gzl_A RAS-related C3 botulinu 92.4 0.054 1.8E-06 51.7 2.6 24 50-73 31-54 (204)
477 3eph_A TRNA isopentenyltransfe 92.4 0.066 2.2E-06 57.2 3.4 25 49-73 2-26 (409)
478 2j0v_A RAC-like GTP-binding pr 92.3 0.056 1.9E-06 51.6 2.6 23 51-73 11-33 (212)
479 2orw_A Thymidine kinase; TMTK, 92.0 0.084 2.9E-06 50.0 3.3 37 179-220 76-112 (184)
480 1puj_A YLQF, conserved hypothe 91.7 0.11 3.6E-06 52.9 3.9 26 49-74 120-145 (282)
481 3syl_A Protein CBBX; photosynt 91.6 0.093 3.2E-06 53.3 3.3 27 47-73 65-91 (309)
482 2chg_A Replication factor C sm 91.5 0.095 3.3E-06 49.6 3.2 42 179-222 102-143 (226)
483 3gmt_A Adenylate kinase; ssgci 91.5 0.096 3.3E-06 51.6 3.2 23 51-73 10-32 (230)
484 1mky_A Probable GTP-binding pr 91.5 0.18 6.2E-06 54.5 5.7 23 51-73 3-25 (439)
485 3p32_A Probable GTPase RV1496/ 91.5 0.1 3.5E-06 54.7 3.6 27 47-73 77-103 (355)
486 3pxi_A Negative regulator of g 91.4 0.44 1.5E-05 55.2 9.2 23 51-73 523-545 (758)
487 3r7w_A Gtpase1, GTP-binding pr 91.3 0.13 4.5E-06 52.8 4.1 24 49-72 3-26 (307)
488 1wxq_A GTP-binding protein; st 91.2 0.091 3.1E-06 56.2 2.9 80 135-230 180-262 (397)
489 1d2n_A N-ethylmaleimide-sensit 91.2 0.11 3.9E-06 51.9 3.5 26 47-72 62-87 (272)
490 3th5_A RAS-related C3 botulinu 90.5 0.04 1.4E-06 52.4 0.0 22 51-72 32-53 (204)
491 2x2e_A Dynamin-1; nitration, h 91.1 0.071 2.4E-06 55.9 1.9 23 51-73 33-55 (353)
492 3t15_A Ribulose bisphosphate c 91.0 0.11 3.8E-06 52.9 3.2 27 47-73 34-60 (293)
493 2hjg_A GTP-binding protein ENG 90.9 0.098 3.4E-06 56.5 2.9 23 51-73 5-27 (436)
494 4hlc_A DTMP kinase, thymidylat 90.9 0.14 4.8E-06 49.4 3.7 26 49-74 2-27 (205)
495 3gj0_A GTP-binding nuclear pro 90.8 0.075 2.6E-06 51.2 1.6 21 52-72 18-39 (221)
496 3l0i_B RAS-related protein RAB 90.7 0.027 9.3E-07 53.4 -1.6 23 51-73 35-57 (199)
497 3eie_A Vacuolar protein sortin 90.7 0.14 4.7E-06 52.9 3.6 27 47-73 49-75 (322)
498 1f5n_A Interferon-induced guan 90.6 0.1 3.5E-06 58.6 2.7 34 37-73 29-62 (592)
499 3geh_A MNME, tRNA modification 90.6 0.099 3.4E-06 57.1 2.5 25 48-72 223-247 (462)
500 3uk6_A RUVB-like 2; hexameric 90.6 0.13 4.3E-06 53.8 3.3 28 47-74 68-95 (368)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.5e-50 Score=427.36 Aligned_cols=223 Identities=28% Similarity=0.446 Sum_probs=200.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+. ..+.+|+||||+|++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.
T Consensus 24 mi~v~~ls~~y~~~~--------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~--G~I~i~G~~i~ 93 (366)
T 3tui_C 24 MIKLSNITKVFHQGT--------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE--GSVLVDGQELT 93 (366)
T ss_dssp CEEEEEEEEEEECSS--------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE--EEEEETTEECS
T ss_pred eEEEEeEEEEeCCCC--------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 799999999997532 23569999999999999999999999999999999999999977 99999999975
Q ss_pred cc------cccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 PS------LIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~~------~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
.. ..|+.+|||+|++.+++.+||+||+.++...+ +.++++.+++++++++.+||.+.++++ +.+|||
T Consensus 94 ~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~--~~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSG 166 (366)
T 3tui_C 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD--NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSG 166 (366)
T ss_dssp SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHTCGGGTTCC-----TTTSCH
T ss_pred cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCH
Confidence 31 24678999999999999999999999987653 356677788999999999998776655 568999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+|||||+.+|++|||||||||||+.++.+++++|++++++ |+|||++||++. .+.++||++++|++|++++.
T Consensus 167 GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 999999999975 68889999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 246 g~~~ev~~ 253 (366)
T 3tui_C 246 DTVSEVFS 253 (366)
T ss_dssp CBHHHHHS
T ss_pred cCHHHHHh
Confidence 99998753
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=9.8e-50 Score=403.04 Aligned_cols=222 Identities=24% Similarity=0.414 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+. ..+.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 1 ~l~~~~l~~~y~~~~--------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~--G~I~~~g~~~~ 70 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE--------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE--GEVYIDNIKTN 70 (235)
T ss_dssp CEEEEEEEEEEEETT--------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEECT
T ss_pred CEEEEEEEEEeCCCC--------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc--eEEEECCEEcc
Confidence 478999999997532 13469999999999999999999999999999999999999977 99999999875
Q ss_pred cc---c----ccccEEEEccCCCCCCCCCHHHHHHHHHHccC-CCCCHHHHHHHHHHHHHHcCCCccc-cccccCCCCCC
Q 039035 91 PS---L----IKRTSAYIMQEDRLFPMLTVFETLMFAADFRL-GPISWSDKKQRVENLVDQLGLTTTR-NTHIGDEGTRG 161 (646)
Q Consensus 91 ~~---~----~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~ 161 (646)
.. . .++.+|||+|++.+++.+||+||+.++...+. ...+.++..+++.++++.+||.+.. +.+ +.+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhh
Confidence 31 1 13469999999999999999999999876532 1245666778899999999997643 444 568
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++||++. +.++||++++|++|++
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEV 223 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 999999999975 4589999999999999
Q ss_pred EEEcChhhH
Q 039035 241 MFQGPPKEV 249 (646)
Q Consensus 241 v~~g~~~~~ 249 (646)
+..++++++
T Consensus 224 ~~~~~~~~~ 232 (235)
T 3tif_A 224 EREEKLRGF 232 (235)
T ss_dssp EEEEECC--
T ss_pred EEEcChhhh
Confidence 999988765
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-49 Score=424.74 Aligned_cols=219 Identities=28% Similarity=0.438 Sum_probs=198.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~yg~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~--G~I~i~G~~~~ 68 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMN 68 (381)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE--EEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC--eEEEECCEECC
Confidence 4899999999953 369999999999999999999999999999999999999987 99999999975
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..++|.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..+++ +++||||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~-----p~~LSGGqrQR 141 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA--GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQR 141 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTCC-----GGGSCHHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhHCCHHHHHH
Confidence 3 234577999999999999999999999987654 356777888999999999998776655 56899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|++++
T Consensus 142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999999765 999999999965 6889999999999999999999999
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 221 l~~ 223 (381)
T 3rlf_A 221 LYH 223 (381)
T ss_dssp HHH
T ss_pred HHh
Confidence 854
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.9e-50 Score=411.66 Aligned_cols=220 Identities=25% Similarity=0.467 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+++ +.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.
T Consensus 7 ~l~i~~ls~~y~~~-----------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~--G~I~~~G~~i~ 73 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-----------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS--GRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEEECTTS-----------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTEECC
T ss_pred EEEEEEEEEEECCC-----------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC--eEEEECCEECC
Confidence 79999999999542 349999999999999999999999999999999999999977 99999999884
Q ss_pred c-----ccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 P-----SLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 ~-----~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ..+++.+|||+|++ ..+..+||+||+.|+...+ ..+.++.+++++++++.+||.+..++.+ .+|||
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 146 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM--KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSF 146 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCH
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCH
Confidence 1 23567899999986 3444789999999987643 3566777889999999999987776654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||||+||+||+.+|++|||||||+|||+.++..++++|++++ ++|+|||++||++. .+.++||++++|++|++++.
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998 56999999999986 47789999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 226 g~~~~~~~ 233 (275)
T 3gfo_A 226 GNPKEVFA 233 (275)
T ss_dssp ECHHHHTH
T ss_pred CCHHHHhc
Confidence 99998754
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.7e-50 Score=424.51 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC-
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET- 89 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~- 89 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++
T Consensus 4 ~l~i~~ls~~y~~------------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~--G~I~i~G~~i~ 69 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS--GEISLSGKTIF 69 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE--EEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC--cEEEECCEECc
Confidence 6999999999953 369999999999999999999999999999999999999987 9999999987
Q ss_pred ---Cc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH
Q 039035 90 ---SP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 90 ---~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 165 (646)
.. ...++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||++.++++ +++||||
T Consensus 70 ~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGG 142 (359)
T 3fvq_A 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG--KGRTAQERQRIEAMLELTGISELAGRY-----PHELSGG 142 (359)
T ss_dssp SSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--SCCSHHHHHHHHHHHHHHTCGGGTTSC-----GGGSCHH
T ss_pred ccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHH
Confidence 22 234678999999999999999999999976443 345566778999999999998877665 4689999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++. +.|+|||++|||+. ++..+||||++|++|+++..|
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999888876 46999999999965 688899999999999999999
Q ss_pred ChhhHHH
Q 039035 245 PPKEVTL 251 (646)
Q Consensus 245 ~~~~~~~ 251 (646)
+++++..
T Consensus 222 ~~~el~~ 228 (359)
T 3fvq_A 222 SPHELYR 228 (359)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999864
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.6e-49 Score=404.77 Aligned_cols=219 Identities=24% Similarity=0.431 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~~------------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~--G~I~~~g~~i~ 89 (263)
T 2olj_A 24 MIDVHQLKKSFGS------------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE--GEIIIDGINLK 89 (263)
T ss_dssp SEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTEESS
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC--cEEEECCEECC
Confidence 5999999999953 359999999999999999999999999999999999999977 99999999874
Q ss_pred --c---ccccccEEEEccCCCCCCCCCHHHHHHHHH-HccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh
Q 039035 91 --P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAA-DFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 91 --~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 164 (646)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ +.+.++.+++++++++.+||.+..++.+ .+|||
T Consensus 90 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 162 (263)
T 2olj_A 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR--KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSG 162 (263)
T ss_dssp STTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCH
T ss_pred CccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCH
Confidence 1 124567999999999999999999999864 332 3345556678999999999987766654 57999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 165 GERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 165 GerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|
T Consensus 163 GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999878999999999965 577899999999999999999
Q ss_pred ChhhHHH
Q 039035 245 PPKEVTL 251 (646)
Q Consensus 245 ~~~~~~~ 251 (646)
+++++..
T Consensus 242 ~~~~~~~ 248 (263)
T 2olj_A 242 KPEDLFD 248 (263)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988753
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4e-49 Score=404.88 Aligned_cols=219 Identities=25% Similarity=0.407 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~--G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYGG------------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE--GAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTEECC
T ss_pred eEEEeeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEEcc
Confidence 6999999999953 359999999999999999999999999999999999999977 99999999875
Q ss_pred c----------------ccccccEEEEccCCCCCCCCCHHHHHHHHH-HccCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 039035 91 P----------------SLIKRTSAYIMQEDRLFPMLTVFETLMFAA-DFRLGPISWSDKKQRVENLVDQLGLTTT-RNT 152 (646)
Q Consensus 91 ~----------------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 152 (646)
. ..+++.+|||+|++.+++.+||+||+.++. ..+ +.+.++.+++++++++.+||.+. .++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~ 149 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 149 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc--CCCHHHHHHHHHHHHHHcCCCchhhcC
Confidence 1 124567999999999999999999999864 322 33455566789999999999877 666
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeE
Q 039035 153 HIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 153 ~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 232 (646)
.+ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.++||++
T Consensus 150 ~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v 223 (262)
T 1b0u_A 150 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 223 (262)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 54 579999999999999999999999999999999999999999999999878999999999965 577899999
Q ss_pred EEEeCCeEEEEcChhhHHH
Q 039035 233 IILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 233 ~~L~~G~iv~~g~~~~~~~ 251 (646)
++|++|+++..|+++++..
T Consensus 224 ~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 224 IFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEeCCHHHHHh
Confidence 9999999999999988753
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-48 Score=415.63 Aligned_cols=221 Identities=23% Similarity=0.396 Sum_probs=197.7
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|++ ++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++
T Consensus 13 ~~l~~~~l~~~y~g-----------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~i 79 (355)
T 1z47_A 13 MTIEFVGVEKIYPG-----------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK--GDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEEECCTT-----------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE--EEEEETTEEC
T ss_pred ceEEEEEEEEEEcC-----------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--cEEEECCEEC
Confidence 38999999999831 1359999999999999999999999999999999999999987 9999999987
Q ss_pred Cc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 90 SP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 90 ~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
.. ...++.+|||+|+..++|.+||+||+.|+...+ +.++++.+++++++++.+||++.++++ +++|||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~--~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~Q 152 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK--RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQ 152 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHH
Confidence 53 234678999999999999999999999987653 345666778999999999998777655 4689999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|+++
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~ 231 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPE 231 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 999999999965 578899999999999999999999
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 232 ~l~~ 235 (355)
T 1z47_A 232 EVYE 235 (355)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8854
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-48 Score=392.60 Aligned_cols=212 Identities=30% Similarity=0.419 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 4 ~l~~~~l~~~y~~------------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 69 (224)
T 2pcj_A 4 ILRAENIKKVIRG------------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE--GKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE--EEEEETTEECC
T ss_pred EEEEEeEEEEECC------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 6899999999953 359999999999999999999999999999999999999977 99999999875
Q ss_pred cc------ccc-ccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 PS------LIK-RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~~------~~~-~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
.. .++ +.+|||+|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++++ ++||
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM--GKPKKEAKERGEYLLSELGLGDKLSRKP-----YELS 142 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSC
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc--CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 122 67999999999999999999999976543 2344555678999999999988776654 5799
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+ ++||++++|++|++++.
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999965 45 89999999999999998
Q ss_pred cC
Q 039035 244 GP 245 (646)
Q Consensus 244 g~ 245 (646)
|+
T Consensus 221 g~ 222 (224)
T 2pcj_A 221 IT 222 (224)
T ss_dssp EE
T ss_pred ee
Confidence 85
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-48 Score=399.20 Aligned_cols=219 Identities=27% Similarity=0.408 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 15 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~--G~I~~~g~~~~ 80 (256)
T 1vpl_A 15 AVVVKDLRKRIGK------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVV 80 (256)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTEETT
T ss_pred eEEEEEEEEEECC------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 7999999999943 359999999999999999999999999999999999999977 99999999875
Q ss_pred c--ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 P--SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~--~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++.+|||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ .+|||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~q 153 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVR 153 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc--CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHH
Confidence 3 235678999999999999999999999876543 2344455678999999999988777654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++..+||++++|++|++++.|++++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999999878999999999975 5778899999999999999999988
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 233 ~~~ 235 (256)
T 1vpl_A 233 LKE 235 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.3e-49 Score=403.09 Aligned_cols=225 Identities=29% Similarity=0.414 Sum_probs=194.5
Q ss_pred CCCCCCCCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeE
Q 039035 2 PGKPVDFTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGK 81 (646)
Q Consensus 2 ~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~ 81 (646)
++++......|+++||++.|++ +.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+
T Consensus 2 ~~~~~~~~~~l~~~~l~~~~~~------------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~ 67 (266)
T 4g1u_C 2 VDMAVTPVALLEASHLHYHVQQ------------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH--GE 67 (266)
T ss_dssp ---CCCCCCEEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS--CE
T ss_pred CccccCCcceEEEEeEEEEeCC------------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--cE
Confidence 3444333348999999999953 369999999999999999999999999999999999999987 99
Q ss_pred EEECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 82 VTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 82 I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
|.++|+++.. ...++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++.+
T Consensus 68 I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~---- 139 (266)
T 4g1u_C 68 CHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY----GGSQDRQALQQVMAQTDCLALAQRDY---- 139 (266)
T ss_dssp EEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----CSTTHHHHHHHHHHHTTCSTTTTSBG----
T ss_pred EEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----CcHHHHHHHHHHHHHcCChhHhcCCc----
Confidence 9999998753 235667999999999888899999999875432 22334568999999999988776654
Q ss_pred CCCCChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCe
Q 039035 159 TRGVSGGERRRVSIGVDIIH------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 231 (646)
++|||||||||+|||||+. +|++|||||||+|||+.++.++++.|++++++ |+|||++||+++ ++.++||+
T Consensus 140 -~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~ 217 (266)
T 4g1u_C 140 -RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADR 217 (266)
T ss_dssp -GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSE
T ss_pred -ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCE
Confidence 5799999999999999999 99999999999999999999999999999875 579999999965 57889999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 039035 232 LIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 232 v~~L~~G~iv~~g~~~~~~ 250 (646)
+++|++|++++.|+++++.
T Consensus 218 v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 218 IMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEETTEEEEEECHHHHC
T ss_pred EEEEECCEEEEEcCHHHHh
Confidence 9999999999999998874
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.7e-49 Score=402.75 Aligned_cols=218 Identities=22% Similarity=0.382 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.
T Consensus 7 ~l~i~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~--G~i~~~g~~~~ 72 (257)
T 1g6h_A 7 ILRTENIVKYFGE------------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDIT 72 (257)
T ss_dssp EEEEEEEEEEETT------------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEECT
T ss_pred EEEEeeeEEEECC------------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECCEECC
Confidence 6999999999953 359999999999999999999999999999999999999977 99999999875
Q ss_pred c----ccccccEEEEccCCCCCCCCCHHHHHHHHHHc-cCC----------CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 039035 91 P----SLIKRTSAYIMQEDRLFPMLTVFETLMFAADF-RLG----------PISWSDKKQRVENLVDQLGLTTTRNTHIG 155 (646)
Q Consensus 91 ~----~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~----------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 155 (646)
. ...++.+|||+|++.+++.+||+||+.++... +.. ....++.+++++++++.+||++..++.+
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 151 (257)
T 1g6h_A 73 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA- 151 (257)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-
T ss_pred CCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-
Confidence 3 12356799999999999999999999986532 111 0123445678999999999987776664
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 156 DEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|
T Consensus 152 ----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (257)
T 1g6h_A 152 ----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 226 (257)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 579999999999999999999999999999999999999999999999888999999999986 467899999999
Q ss_pred eCCeEEEEcChhh
Q 039035 236 ARGQLMFQGPPKE 248 (646)
Q Consensus 236 ~~G~iv~~g~~~~ 248 (646)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999887
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-48 Score=415.11 Aligned_cols=219 Identities=27% Similarity=0.479 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~i~ 68 (362)
T 2it1_A 3 EIKLENIVKKFGN------------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVT 68 (362)
T ss_dssp CEEEEEEEEESSS------------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE--EEEEETTEECT
T ss_pred EEEEEeEEEEECC------------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc--eEEEECCEECC
Confidence 4899999999843 359999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..++|.+||+||+.|+.+.+ +.++++.+++++++++.+||++..+++ +++||||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QR 141 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR--KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQR 141 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHH
Confidence 3 233578999999999999999999999987643 345666678899999999998777665 46899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999764 999999999965 5788999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 221 ~~~ 223 (362)
T 2it1_A 221 VYY 223 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 854
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-48 Score=415.58 Aligned_cols=219 Identities=26% Similarity=0.435 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~i~ 68 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS--GEIYFDDVLVN 68 (359)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE--EEEEETTEECT
T ss_pred EEEEEEEEEEECC------------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc--cEEEECCEECC
Confidence 4899999999953 359999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..++|++||+||+.|+.+.+ +.++++.+++++++++.+||++..+++ +++||||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QR 141 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR--RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQR 141 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS--CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHH
Confidence 3 234578999999999999999999999875432 334455567899999999998777655 46899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 999999999965 5788999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 221 l~~ 223 (359)
T 2yyz_A 221 VYD 223 (359)
T ss_dssp HHH
T ss_pred HHh
Confidence 854
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.4e-48 Score=415.50 Aligned_cols=219 Identities=28% Similarity=0.490 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~~~ 68 (372)
T 1g29_1 3 GVRLVDVWKVFGE------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR--GQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE--EEEEETTEEEE
T ss_pred EEEEEeEEEEECC------------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCc--cEEEECCEECc
Confidence 5899999999943 359999999999999999999999999999999999999987 99999998864
Q ss_pred c-------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCC
Q 039035 91 P-------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVS 163 (646)
Q Consensus 91 ~-------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 163 (646)
. ...++.+|||+|+..++|++||+||+.|+...+ +.++++.+++++++++.+||++..+++ +++||
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LS 141 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRK-----PRELS 141 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSC
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCC
Confidence 2 123578999999999999999999999987653 345666778899999999998777655 46899
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
|||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++.
T Consensus 142 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 999999999965 5788999999999999999
Q ss_pred EcChhhHHH
Q 039035 243 QGPPKEVTL 251 (646)
Q Consensus 243 ~g~~~~~~~ 251 (646)
.|+++++..
T Consensus 221 ~g~~~~l~~ 229 (372)
T 1g29_1 221 VGSPDEVYD 229 (372)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHHh
Confidence 999998853
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-48 Score=416.59 Aligned_cols=219 Identities=27% Similarity=0.444 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEeccccccccccccccc--cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVD--LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.|+++||+++|++ +. +|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|++
T Consensus 3 ~l~i~~l~~~y~~------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~ 68 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRL 68 (353)
T ss_dssp CEEEEEEEEEEGG------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSE--EEEEETTEE
T ss_pred EEEEEeEEEEECC------------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCEE
Confidence 4899999999953 35 9999999999999999999999999999999999999987 999999988
Q ss_pred CCc------ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCC
Q 039035 89 TSP------SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGV 162 (646)
Q Consensus 89 ~~~------~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 162 (646)
+.. ...++.+|||+|+..++|.+||+||+.|+...+ +.+.++.+++++++++.+||++..+++ +++|
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~~~-----~~~L 141 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM--KMSKEEIRKRVEEVAKILDIHHVLNHF-----PREL 141 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS--SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGS
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhC
Confidence 642 234678999999999999999999999976432 345666678899999999998877665 4589
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++
T Consensus 142 SGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999965 578899999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
..|+++++..
T Consensus 221 ~~g~~~~l~~ 230 (353)
T 1oxx_K 221 QVGKPEDLYD 230 (353)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999998854
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.4e-48 Score=414.86 Aligned_cols=219 Identities=26% Similarity=0.437 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 11 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~i~g~~i~ 76 (372)
T 1v43_A 11 EVKLENLTKRFGN------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE--GRIYFGDRDVT 76 (372)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE--EEEEETTEECT
T ss_pred eEEEEEEEEEECC------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCc--eEEEECCEECC
Confidence 4999999999953 359999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..++|++||+||+.|+.+.+ +.++++.+++++++++.+||++.++++ +++||||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QR 149 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK--KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQR 149 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHH
Confidence 3 233578999999999999999999999875432 345666778899999999998776655 56899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus 150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999865 999999999965 5788999999999999999999998
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 229 l~~ 231 (372)
T 1v43_A 229 VYL 231 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 853
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-48 Score=392.01 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 6 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 71 (240)
T 1ji0_A 6 VLEVQSLHVYYGA------------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK--GKIIFNGQDIT 71 (240)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEECT
T ss_pred eEEEEeEEEEECC------------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--ceEEECCEECC
Confidence 6999999999953 359999999999999999999999999999999999999977 99999999875
Q ss_pred cc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCCCCCCChH
Q 039035 91 PS---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-LTTTRNTHIGDEGTRGVSGG 165 (646)
Q Consensus 91 ~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgG 165 (646)
.. . .++.+|||+|++.+++.+||+||+.++... ..+.++.+++++++++.++ |.+..++. +++||||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LSgG 143 (240)
T 1ji0_A 72 NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN---RKDKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGG 143 (240)
T ss_dssp TCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT---CCCSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHH
T ss_pred CCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc---CCCHHHHHHHHHHHHHHcccHhhHhcCC-----hhhCCHH
Confidence 31 1 245699999999999999999999986421 1223345567889999995 87666554 4679999
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
|||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999999878999999999965 5778999999999999999999
Q ss_pred hhhHH
Q 039035 246 PKEVT 250 (646)
Q Consensus 246 ~~~~~ 250 (646)
++++.
T Consensus 223 ~~~~~ 227 (240)
T 1ji0_A 223 ASELL 227 (240)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-48 Score=410.11 Aligned_cols=214 Identities=27% Similarity=0.462 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+|+++||+++|+ ++ +|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~y~------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~--G~I~~~g~~i~ 65 (348)
T 3d31_A 1 MIEIESLSRKWK------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVT 65 (348)
T ss_dssp CEEEEEEEEECS------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE--EEEEETTEECT
T ss_pred CEEEEEEEEEEC------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC--cEEEECCEECC
Confidence 378999999984 24 8999999999999999999999999999999999999987 99999999875
Q ss_pred c-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 P-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
. ...++.+|||+|+..++|.+||+||+.|+...+. .+++ ++++++++.+||++..+++ +++||||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~--~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QR 135 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK--IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQR 135 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC--CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC--CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHH
Confidence 3 2346789999999999999999999999876431 2222 6799999999998877665 45899999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhh
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKE 248 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 248 (646)
|+|||||+.+|++|||||||+|||+..+.++.+.|+++++ .|+|+|++|||+. ++..+||++++|++|+++..|++++
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999976 4999999999965 5788999999999999999999998
Q ss_pred HH
Q 039035 249 VT 250 (646)
Q Consensus 249 ~~ 250 (646)
+.
T Consensus 215 ~~ 216 (348)
T 3d31_A 215 IF 216 (348)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-47 Score=388.64 Aligned_cols=213 Identities=24% Similarity=0.446 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc
Q 039035 12 LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP 91 (646)
Q Consensus 12 l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~ 91 (646)
|+++||+++|++ +|+|+|+++++ |+++|+||||||||||||+|+|+++|++ |+|.++|+++..
T Consensus 2 l~~~~l~~~y~~--------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~ 64 (240)
T 2onk_A 2 FLKVRAEKRLGN--------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITP 64 (240)
T ss_dssp CEEEEEEEEETT--------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE--EEEEETTEECTT
T ss_pred EEEEEEEEEeCC--------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEECCEECCc
Confidence 789999999831 49999999999 9999999999999999999999999977 999999998753
Q ss_pred -ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 92 -SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 92 -~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++++ .+|||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv 135 (240)
T 2onk_A 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRV 135 (240)
T ss_dssp SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHH
T ss_pred CchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 234677999999999999999999998864321 12223577899999999987776654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999764 999999999965 57789999999999999999999887
Q ss_pred HH
Q 039035 250 TL 251 (646)
Q Consensus 250 ~~ 251 (646)
..
T Consensus 215 ~~ 216 (240)
T 2onk_A 215 FS 216 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-47 Score=394.41 Aligned_cols=223 Identities=29% Similarity=0.392 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.+.. ..+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 2 ~l~~~~l~~~y~~~~~-------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~--G~I~~~g~~~~ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTP-------LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKK 72 (266)
T ss_dssp CEEEEEEEEEESTTST-------TCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEECC
T ss_pred EEEEEEEEEEecCCCc-------cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--cEEEECCEECc
Confidence 4899999999962100 01369999999999999999999999999999999999999977 99999999875
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCCCCCCCChHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT--TTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGer 167 (646)
...+++.+|||+|++ ..++.+||+||+.++.... .+.++.+++++++++.+||. +..++.+ ++||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~ 144 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF---YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEK 144 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT---CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc---CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHH
Confidence 434567899999995 5667799999999864321 12223346789999999998 7766654 57999999
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 168 RRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 168 qRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
|||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999986 467789999999999999999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.3e-47 Score=396.66 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ +.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 21 ~l~~~~l~~~y~~------------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~--G~I~~~g~~~~ 86 (279)
T 2ihy_A 21 LIQLDQIGRMKQG------------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS--GTVNLFGKMPG 86 (279)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTBCCC
T ss_pred eEEEEeEEEEECC------------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC--eEEEECCEEcc
Confidence 6999999999953 359999999999999999999999999999999999999977 99999998874
Q ss_pred --c---ccccccEEEEccCCCC--CCCCCHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCC
Q 039035 91 --P---SLIKRTSAYIMQEDRL--FPMLTVFETLMFAADFR--LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRG 161 (646)
Q Consensus 91 --~---~~~~~~i~yv~Q~~~l--~~~lTv~e~l~~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 161 (646)
. ..+++.+|||+|++.+ .+.+||+||+.++.... ......++.+++++++++.+||.+..++.+ .+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 161 (279)
T 2ihy_A 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GY 161 (279)
T ss_dssp ---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred cccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 2 2356789999999754 34579999998753211 111112344578899999999987776654 57
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV--ILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||++++|++|+
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQ 240 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998779999 99999975 4678999999999999
Q ss_pred EEEEcChhhH
Q 039035 240 LMFQGPPKEV 249 (646)
Q Consensus 240 iv~~g~~~~~ 249 (646)
+++.|+++++
T Consensus 241 i~~~g~~~~~ 250 (279)
T 2ihy_A 241 SIQQGAVEDI 250 (279)
T ss_dssp EEEEEEHHHH
T ss_pred EEEECCHHHH
Confidence 9999988776
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.1e-47 Score=384.89 Aligned_cols=218 Identities=24% Similarity=0.314 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC--CCCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR--IASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~--~~~~~~~G~I~~~g~~ 88 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|++ |+|.++|++
T Consensus 3 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~--G~I~~~g~~ 68 (250)
T 2d2e_A 3 QLEIRDLWASIDG------------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER--GEILLDGEN 68 (250)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEE--EEEEETTEE
T ss_pred eEEEEeEEEEECC------------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc--eEEEECCEE
Confidence 5899999999953 3599999999999999999999999999999999998 66765 999999998
Q ss_pred CCcc---c-ccccEEEEccCCCCCCCCCHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCC-
Q 039035 89 TSPS---L-IKRTSAYIMQEDRLFPMLTVFETLMFAADF-RLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRG- 161 (646)
Q Consensus 89 ~~~~---~-~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~- 161 (646)
+... . .++.++||+|++.+++.+||+||+.+.... .......++..++++++++.+||. +..++.+ .+
T Consensus 69 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~ 143 (250)
T 2d2e_A 69 ILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEG 143 (250)
T ss_dssp CTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC
T ss_pred CCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccC
Confidence 7531 1 234589999999999999999999986532 111123344567889999999994 6666554 56
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh-cCeEEEEeCCeE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL-LDHLIILARGQL 240 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~G~i 240 (646)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+ ||++++|++|++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999777999999999976 46667 599999999999
Q ss_pred EEEcChhh
Q 039035 241 MFQGPPKE 248 (646)
Q Consensus 241 v~~g~~~~ 248 (646)
++.|+++.
T Consensus 223 ~~~g~~~~ 230 (250)
T 2d2e_A 223 VATGGPEL 230 (250)
T ss_dssp EEEESHHH
T ss_pred EEEeCHHH
Confidence 99999873
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.1e-46 Score=384.40 Aligned_cols=221 Identities=25% Similarity=0.317 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCcceeEEEECCee
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGSLKGKVTLDGKE 88 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~~~G~I~~~g~~ 88 (646)
.|+++||+++|++ +.+|+|||+++++||+++|+||||||||||||+|+|+. +|++ |+|.++|++
T Consensus 20 ~l~~~~l~~~y~~------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~--G~I~~~g~~ 85 (267)
T 2zu0_C 20 MLSIKDLHVSVED------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTG--GTVEFKGKD 85 (267)
T ss_dssp CEEEEEEEEEETT------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEE--EEEEETTEE
T ss_pred eEEEEeEEEEECC------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCC--eEEEECCEE
Confidence 7999999999942 35999999999999999999999999999999999984 4555 999999998
Q ss_pred CCc---ccc-cccEEEEccCCCCCCCCCHHHHHHHHHH-c----cCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 039035 89 TSP---SLI-KRTSAYIMQEDRLFPMLTVFETLMFAAD-F----RLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~-~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 158 (646)
+.. ... ++.++||+|++.+++.+||.|++.+... . .....+.++.+++++++++.+||. +..++.++
T Consensus 86 i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 162 (267)
T 2zu0_C 86 LLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN--- 162 (267)
T ss_dssp GGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT---
T ss_pred CCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc---
Confidence 742 122 3459999999999999999999987542 1 111234445567899999999996 45554432
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhh-cCeEEEEeC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLL-LDHLIILAR 237 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~-~D~v~~L~~ 237 (646)
.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+ ||++++|++
T Consensus 163 -~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~ 240 (267)
T 2zu0_C 163 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ 240 (267)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET
T ss_pred -cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC
Confidence 149999999999999999999999999999999999999999999999777999999999975 45555 899999999
Q ss_pred CeEEEEcChhhHH
Q 039035 238 GQLMFQGPPKEVT 250 (646)
Q Consensus 238 G~iv~~g~~~~~~ 250 (646)
|++++.|+++++.
T Consensus 241 G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 241 GRIVKSGDFTLVK 253 (267)
T ss_dssp TEEEEEECTTHHH
T ss_pred CEEEEEcCHHHHh
Confidence 9999999998765
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3e-46 Score=390.36 Aligned_cols=216 Identities=25% Similarity=0.423 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||+++|+.. +.+|+||||+|++||++||+||||||||||+++|+|+++|++ |+|.++|+++
T Consensus 52 ~~i~~~~vs~~y~~~-----------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~--G~I~i~G~~i 118 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-----------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS--GCIRIDGQDI 118 (306)
T ss_dssp CCEEEEEEEEESSTT-----------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE--EEEEETTEET
T ss_pred CeEEEEEEEEEcCCC-----------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--cEEEECCEEc
Confidence 479999999999632 359999999999999999999999999999999999999977 9999999997
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 159 (646)
.. ..+|+.+|||+|++.+|+ .||+||+.++... ... ++++++++..++.+ ..++.++ +..
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERG 188 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTS
T ss_pred ccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCc
Confidence 53 346788999999999886 4999999875321 122 33555566655543 3355555 345
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+|||||||||+|||||+.+|+||||||||||||+.++..+.+.|+++.+ ++|+|++||+++ .+.. ||+|++|++|+
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~ 265 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGC 265 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999865 799999999976 4554 99999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 266 iv~~G~~~el~~ 277 (306)
T 3nh6_A 266 IVERGRHEALLS 277 (306)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.3e-45 Score=376.64 Aligned_cols=209 Identities=28% Similarity=0.381 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.
T Consensus 4 ~l~i~~l~~~y~~-----------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~--G~I~------- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ--GKIE------- 63 (253)
T ss_dssp EEEEEEEEEEETT-----------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSE--EEEE-------
T ss_pred eEEEeeEEEEeCC-----------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEE-------
Confidence 6999999999951 1359999999999999999999999999999999999999977 9998
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC--CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG--PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
.++.+|||+|++.+++.+||+||+.++...... .....+.+++++++++.+||.+..++.+ .+|||||||
T Consensus 64 ---~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ---ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ---EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 246799999999999999999999986432211 0122344577899999999987776654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 247 (646)
||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+ ++.|+++
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~ 213 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETR 213 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHH
Confidence 999999999999999999999999999999999999999876 999999999975 5778999999999999 9999887
Q ss_pred hH
Q 039035 248 EV 249 (646)
Q Consensus 248 ~~ 249 (646)
++
T Consensus 214 ~~ 215 (253)
T 2nq2_C 214 NI 215 (253)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.9e-46 Score=379.39 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++||+++|++. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 7 ~~~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~I~i~g~~~~ 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPD----------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEESSTT----------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEETT
T ss_pred ceeEEEEEEEeCCC----------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEEhh
Confidence 68999999998421 2369999999999999999999999999999999999999977 99999999875
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI------GDEGTRG 161 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~ 161 (646)
. ..+++.+|||+|++.+++ .||+||+.++. +..+ .++++++++.+++.+..++.. -++.+.+
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 145 (247)
T 2ff7_A 75 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----PGMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 145 (247)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----TTCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC
T ss_pred hCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----CCCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC
Confidence 3 235678999999998887 59999998752 1122 245677888888876544321 1234678
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|+++
T Consensus 146 LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIV 222 (247)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999995 59999999999763 4 459999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
+.|+++++.
T Consensus 223 ~~g~~~~l~ 231 (247)
T 2ff7_A 223 EQGKHKELL 231 (247)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999998874
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.8e-46 Score=383.71 Aligned_cols=220 Identities=25% Similarity=0.378 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||+++|++. .++.+|+||||++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++
T Consensus 15 ~~l~~~~l~~~y~~~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~--G~I~~~g~~i 83 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH---------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGEPL 83 (271)
T ss_dssp CCEEEEEEEECCTTC---------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE--EEEEETTEEG
T ss_pred ceEEEEEEEEEeCCC---------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--CEEEECCEEc
Confidence 479999999998541 12469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSD-----KKQRVENLVDQL--GLTTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~ 159 (646)
.. ..+++.+|||+|++.+++ .||+||+.++.... ...++ ....++++++.+ |+.+..+.. +
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~ 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---PTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----G 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----G
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC---ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----c
Confidence 42 234677999999998887 59999998853211 11111 123456778887 676555444 4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++||++. .+. .||++++|++|
T Consensus 155 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G 232 (271)
T 2ixe_A 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEG 232 (271)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999875 5999999999975 354 59999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
+++..|+++++..
T Consensus 233 ~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 233 SVCEQGTHLQLME 245 (271)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999988753
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-45 Score=373.99 Aligned_cols=207 Identities=23% Similarity=0.397 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++ .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|+++.
T Consensus 4 ~l~~~~l~~~----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGG
T ss_pred EEEEEceEEE----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECC
Confidence 5899999864 389999999999999999999999999999999999987 4 99999999864
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
. ..+++.+|||+|++.+++.+||+||+.++.. ...+ +++++++++.+||.+..++.+ .+||||||
T Consensus 65 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~ 132 (249)
T 2qi9_C 65 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DKTR----TELLNDVAGALALDDKLGRST-----NQLSGGEW 132 (249)
T ss_dssp GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---STTC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHH
T ss_pred cCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cCCc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHH
Confidence 2 2356779999999999999999999987521 1111 467899999999987776554 57999999
Q ss_pred HHHHHHHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 168 RRVSIGVDIIHGPP-------LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 168 qRv~ia~~L~~~P~-------lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
|||+||++|+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 133 qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 133 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999 99999999999999999999999999877999999999965 57789999999999999
Q ss_pred EEEcChhhH
Q 039035 241 MFQGPPKEV 249 (646)
Q Consensus 241 v~~g~~~~~ 249 (646)
++.|+++++
T Consensus 212 ~~~g~~~~~ 220 (249)
T 2qi9_C 212 LASGRREEV 220 (249)
T ss_dssp EEEEEHHHH
T ss_pred EEeCCHHHH
Confidence 999988776
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-46 Score=376.57 Aligned_cols=217 Identities=24% Similarity=0.388 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++ ++.+|+|||+++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~-----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~ 67 (243)
T 1mv5_A 1 MLSARHVDFAYDD-----------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA--GEITIDGQPID 67 (243)
T ss_dssp CEEEEEEEECSSS-----------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB--SCEEETTEEST
T ss_pred CEEEEEEEEEeCC-----------CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--cEEEECCEEhh
Confidence 3789999998842 2369999999999999999999999999999999999999977 99999999874
Q ss_pred c---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCCCCCC
Q 039035 91 P---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHI------GDEGTRG 161 (646)
Q Consensus 91 ~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~ 161 (646)
. ..+++.+|||+|++.+++ .||+||+.++.. +... +++++++++.+++.+..++.. -++.+.+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~ 139 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK 139 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBC
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCc
Confidence 2 345678999999998887 499999987421 1122 245788899999987655432 1234678
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||++. .+ +.||++++|++|+++
T Consensus 140 LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQIT 216 (243)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 6999999999975 45 469999999999999
Q ss_pred EEcChhhHHH
Q 039035 242 FQGPPKEVTL 251 (646)
Q Consensus 242 ~~g~~~~~~~ 251 (646)
..|+++++..
T Consensus 217 ~~g~~~~~~~ 226 (243)
T 1mv5_A 217 GSGKHNELVA 226 (243)
T ss_dssp CCSCHHHHHH
T ss_pred EeCCHHHHHh
Confidence 9999887753
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-45 Score=366.65 Aligned_cols=201 Identities=19% Similarity=0.303 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+ + .+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|+++.
T Consensus 10 ~l~~~~ls~~y~------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~--G~I~~~g~~~~ 74 (214)
T 1sgw_A 10 KLEIRDLSVGYD------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK--GEIIYNGVPIT 74 (214)
T ss_dssp EEEEEEEEEESS------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEETTEEGG
T ss_pred eEEEEEEEEEeC------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--eEEEECCEEhh
Confidence 899999999884 2 48999999999999999999999999999999999999977 99999999875
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
..++.++||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||++. ++. +.+|||||||||
T Consensus 75 --~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~-~~-~~~~~~~l~~~gl~~~-~~~-----~~~LSgGqkqrv 142 (214)
T 1sgw_A 75 --KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG--VK-VN-KNEIMDALESVEVLDL-KKK-----LGELSQGTIRRV 142 (214)
T ss_dssp --GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT--CC-CC-HHHHHHHHHHTTCCCT-TSB-----GGGSCHHHHHHH
T ss_pred --hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC--Cc-hH-HHHHHHHHHHcCCCcC-CCC-----hhhCCHHHHHHH
Confidence 357789999999999999999999998765421 11 12 4678999999999865 544 468999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++..++|+++++ +|+|
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999877999999999986 477788888755 4443
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-44 Score=371.59 Aligned_cols=211 Identities=19% Similarity=0.270 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++.. ..+.+|+|+|++++ ||+++|+||||||||||||+|+|++ |++ |+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~--------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~--G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG--------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS--GNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEET--------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE--EEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCC--------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC--cEEEECCEECc
Confidence 378999999996410 11469999999999 9999999999999999999999999 976 99999998864
Q ss_pred cccccccEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSA-YIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerq 168 (646)
....++.++ ||+|++.+ .+||+||+.+...++ .. .+++++++++.+||. +..++++ .+|||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~--~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkq 135 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK--GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSV 135 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT--CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc--ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHH
Confidence 311256799 99999887 789999999876543 11 235688999999998 7766654 579999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC-eEEEEeCCeEEEEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD-HLIILARGQLMFQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D-~v~~L~~G~iv~~g~~~ 247 (646)
||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |||++||++. .+.++|| ++++|++|++++.|+++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999998854 9999999975 4678999 99999999999999988
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
++.
T Consensus 212 ~l~ 214 (263)
T 2pjz_A 212 ELL 214 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=9.6e-45 Score=371.88 Aligned_cols=217 Identities=25% Similarity=0.414 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||+++|+++ ..+.+|+|||+++++||+++|+||||||||||+|+|+|++++ + |+|.++|+++
T Consensus 16 ~~l~i~~l~~~y~~~---------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--G~I~i~g~~i 83 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ---------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E--GDIKIGGKNV 83 (260)
T ss_dssp CCEEEEEEEECCTTC---------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-E--EEEEETTEEG
T ss_pred CeEEEEEEEEEeCCC---------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-C--eEEEECCEEh
Confidence 479999999998542 124699999999999999999999999999999999999875 5 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-------RNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~ 159 (646)
.. ..+++.++||+|++.+++ .||+||+.++.. ... ++++.++++.+++.+. .++.++ +.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~ 153 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKG 153 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSS
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC----CCC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCc
Confidence 42 235678999999998886 599999987421 112 2345667777776443 334343 456
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ |+|||++||++.. + +.||++++|++|+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~ 230 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGK 230 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999965 8999999999764 4 4699999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
++..|+++++..
T Consensus 231 i~~~g~~~~l~~ 242 (260)
T 2ghi_A 231 IVEKGTHKDLLK 242 (260)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999988753
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-45 Score=390.97 Aligned_cols=218 Identities=22% Similarity=0.298 Sum_probs=184.0
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..+.|+++||+++|+.. ++.+|+|||++|++||+++|+||||||||||||+|+|+++ ++ |+|.++|+
T Consensus 16 ~~~~i~~~~l~~~y~~~----------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~--G~I~i~G~ 82 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG----------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TE--GEIQIDGV 82 (390)
T ss_dssp SSCCEEEEEEEEESSSS----------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EE--EEEEESSC
T ss_pred CCCeEEEEEEEEEecCC----------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CC--eEEEECCE
Confidence 34589999999999532 2469999999999999999999999999999999999986 54 99999999
Q ss_pred eCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccC------CC
Q 039035 88 ETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGD------EG 158 (646)
Q Consensus 88 ~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~ 158 (646)
++.. ..+++.+|||+|++.+|+ +||+||+.+.. ... +++++++++.++|.+..+++... +.
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~-----~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~ 152 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA-----AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC-----CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc-----ccC----HHHHHHHHHHhCCHHHHhhcccccccccccc
Confidence 8753 235688999999999998 59999996321 111 35688899999998766554321 11
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++. +++|+|++||+.. . ...||+|++|++|
T Consensus 153 g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~G 229 (390)
T 3gd7_A 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEEN 229 (390)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEETT
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEECC
Confidence 23499999999999999999999999999999999999999999999864 4899999999964 3 4579999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
+++..|+++++..
T Consensus 230 ~i~~~g~~~el~~ 242 (390)
T 3gd7_A 230 KVRQYDSILELYH 242 (390)
T ss_dssp EEEEESSHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.3e-43 Score=356.80 Aligned_cols=205 Identities=26% Similarity=0.395 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||+++|+.+ ++.+|+|||+++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~----------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g--- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEG----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--GKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEEECSSTT----------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE--EEEEECS---
T ss_pred ceEEEEEEEEEeCCC----------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCc--cEEEECC---
Confidence 479999999988531 2469999999999999999999999999999999999999977 9999998
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-------NTHIGDEGTRGV 162 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~L 162 (646)
.++||+|++.+++. ||+||+.++.. ... .+++++++.+++.+.. ++.++ +.+.+|
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L 131 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS-----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 131 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC-----CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTS
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC-----cCh----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcC
Confidence 38999999998886 99999987431 111 1233445555554322 22332 345789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEK-VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. +|+|||++||++. .+ +.||++++|++|+++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSY 208 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999997 45664 4899999999975 45 469999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
+.|+++++.
T Consensus 209 ~~g~~~~~~ 217 (229)
T 2pze_A 209 FYGTFSELQ 217 (229)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999988774
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=357.57 Aligned_cols=208 Identities=26% Similarity=0.432 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|+.. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~I~~~g---- 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE--GHVAIKG---- 66 (237)
T ss_dssp CEEEEEEEEESCTT----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEE--EEEEECS----
T ss_pred eEEEEEEEEEeCCC----------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEECC----
Confidence 48999999998531 2469999999999999999999999999999999999999876 9999998
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHH---HHHHcCCCcc-ccccccCCCCCCCChHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVEN---LVDQLGLTTT-RNTHIGDEGTRGVSGGE 166 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~-~~~~vg~~~~~~LSgGe 166 (646)
.+|||+|++.+ +.+||+||+.++... ..+. .+++.+ +.+.+++.+. .++.+ ++.+.+|||||
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGq 132 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL-----EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQ 132 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC-----CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHH
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc-----CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHH
Confidence 38999999864 578999999875321 1111 111211 2233333221 12223 34567899999
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 167 RRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVH---NIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 167 rqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~---~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
||||+|||||+.+|++|||||||+|||+.++..+++.|+ +++ +|+|||++||+++. + +.||++++|++|+++..
T Consensus 133 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 133 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999995 443 58999999999864 4 57999999999999999
Q ss_pred cChhhHHH
Q 039035 244 GPPKEVTL 251 (646)
Q Consensus 244 g~~~~~~~ 251 (646)
|+++++..
T Consensus 210 g~~~~~~~ 217 (237)
T 2cbz_A 210 GSYQELLA 217 (237)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHhh
Confidence 99888753
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.6e-43 Score=397.32 Aligned_cols=220 Identities=28% Similarity=0.500 Sum_probs=186.3
Q ss_pred ce-EEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 10 GG-LGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 10 ~~-l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
+. |+++||+++|+++ .++.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 339 ~~~i~~~~v~~~y~~~---------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~--G~i~~~g~~ 407 (595)
T 2yl4_A 339 QGALEFKNVHFAYPAR---------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS--GTISLDGHD 407 (595)
T ss_dssp CCCEEEEEEEEECSSC---------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE--EEEEETTEE
T ss_pred CCeEEEEEEEEEeCCC---------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--cEEEECCEE
Confidence 46 9999999999642 12469999999999999999999999999999999999999977 999999998
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~ 158 (646)
+.. ..+++.+|||+|++.+++. ||+||+.++...+ ...+ +++++++++.+++.+ ..|+.+|+ .
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~ 480 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP-SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-K 480 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST-TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-S
T ss_pred hhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc-cccC----HHHHHHHHHHcCCHHHHHhCcccccccccC-C
Confidence 753 3467789999999999875 9999998853210 0112 356778888887753 35677764 4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|++||+++ .+ +.||++++|++|
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G 557 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQG 557 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETT
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECC
Confidence 578999999999999999999999999999999999999999999999976 899999999975 35 469999999999
Q ss_pred eEEEEcChhhHH
Q 039035 239 QLMFQGPPKEVT 250 (646)
Q Consensus 239 ~iv~~g~~~~~~ 250 (646)
++++.|+++++.
T Consensus 558 ~i~~~g~~~~l~ 569 (595)
T 2yl4_A 558 KITEYGKHEELL 569 (595)
T ss_dssp EEEEEECSCC--
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-42 Score=394.55 Aligned_cols=218 Identities=28% Similarity=0.476 Sum_probs=186.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||+++|+++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~--G~i~~~g~~~ 407 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----------EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDV 407 (582)
T ss_pred CeEEEEEEEEEcCCC----------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC--CEEEECCEEh
Confidence 479999999999642 1469999999999999999999999999999999999999987 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-------RNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~ 159 (646)
.. ..+++.+|||+|++.+++. ||+||+.++.. +..+ +++++++++.+++.+. .|+.+|+ ..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~ 478 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NG 478 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CC
Confidence 42 3567889999999999885 99999988531 1222 3457778888877643 3555654 45
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|+++ .+ +.||++++|++|+
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~ 555 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999865 999999999975 34 4799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 556 i~~~g~~~~l~~ 567 (582)
T 3b5x_A 556 IIERGRHADLLA 567 (582)
T ss_pred EEEECCHHHHHh
Confidence 999999988753
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-42 Score=393.13 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=187.2
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|+++ ++.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~--G~i~~~g~~~ 407 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE--GHILMDGHDL 407 (582)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSE--EEEEETTEET
T ss_pred CcEEEEEEEEEcCCC----------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCC--CeEEECCEEc
Confidence 479999999999632 1469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-------TRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 159 (646)
.. ..+++.+|||+|++.+++. ||+||+.++.. +..+ +++++++++.+++.+ ..|+.+|+ ..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~ 478 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFND-TVANNIAYART---EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NG 478 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TS
T ss_pred cccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---CCCC----HHHHHHHHHHcCCHHHHHhccccccccccC-CC
Confidence 53 3467789999999999885 99999987531 1222 245777788777754 34566654 45
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|++||+++. + +.||++++|++|+
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~ 555 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGI 555 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999975 9999999999864 4 5799999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 556 i~~~g~~~~l~~ 567 (582)
T 3b60_A 556 IVERGTHSELLA 567 (582)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999998754
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.8e-42 Score=393.65 Aligned_cols=217 Identities=25% Similarity=0.425 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.++++|++++|++. ++.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|+++
T Consensus 338 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~--G~i~~~g~~~ 405 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS--GQILIDGHNI 405 (578)
T ss_dssp CCEEEEEEEECSCSS----------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE--EEEEETTEEG
T ss_pred CeEEEEEEEEEcCCC----------CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC--cEEEECCEEh
Confidence 479999999999642 2469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
.. ..+|+.+|||+|++.+++. ||+||+.++. +..+. +++.+.++..++. +..++.+|+ ..
T Consensus 406 ~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g 475 (578)
T 4a82_A 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RG 475 (578)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GG
T ss_pred hhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CC
Confidence 53 3567889999999999987 9999998752 11222 3455556555543 345666663 45
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+.+|++|+|||||||||+.++..+.+.++++. +|+|+|++||+++. + +.||++++|++|+
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~ 552 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGH 552 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999885 47999999999864 4 5699999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 553 i~~~g~~~el~~ 564 (578)
T 4a82_A 553 IVETGTHRELIA 564 (578)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-42 Score=394.15 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++|++++|++. ++.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||+++
T Consensus 340 ~~i~~~~v~~~y~~~----------~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~--G~i~i~g~~i 407 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----------TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER--GRVEVDELDV 407 (587)
T ss_dssp CCEEEEEEEECSSSS----------SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE--EEEEESSSBG
T ss_pred CcEEEEEEEEEcCCC----------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC--cEEEECCEEc
Confidence 479999999999642 3469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~ 159 (646)
.. ..+|++++||+|++.+++. ||+||+.++.. ..+.+ ++.+.++..++ .+..++.++ +..
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~ 477 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE----DATDD----EIVEAAKIAQIHDFIISLPEGYDSRVE-RGG 477 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS----SCCHH----HHHHHHHHTTCHHHHHTSSSGGGCEEC-SSS
T ss_pred ccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC----CCCHH----HHHHHHHHhCcHHHHHhcccchhhHhc-CCC
Confidence 53 3567889999999999876 99999987531 12222 23334444433 334566665 356
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. +|+|+|++||+++. + ..||++++|++|+
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEGK 554 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETTE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999985 58999999999753 4 5899999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++.+
T Consensus 555 i~~~g~~~el~~ 566 (587)
T 3qf4_A 555 VAGFGTHKELLE 566 (587)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999999864
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-42 Score=391.95 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+.|+++||+++|+++ +.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||+++
T Consensus 353 ~~i~~~~v~~~y~~~-----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~--G~i~~~g~~i 419 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-----------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR--GQILVDGIDI 419 (598)
T ss_dssp CCEEEEEEECCSSSS-----------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSE--EEEEETTEEG
T ss_pred CeEEEEEEEEECCCC-----------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCC--eEEEECCEEh
Confidence 479999999998532 469999999999999999999999999999999999999977 9999999987
Q ss_pred Cc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCCCC
Q 039035 90 SP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-------TTRNTHIGDEGT 159 (646)
Q Consensus 90 ~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 159 (646)
.. ..+|+.+|||+|++.+++. ||+||+.++. +..++ +++++.++..++. +..++.+|+ ..
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g 489 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD-NG 489 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS----TTCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH-HH
T ss_pred hhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC----CCCCH----HHHHHHHHHhCCHHHHHhccccccchhcC-CC
Confidence 53 3567889999999998875 9999998752 11222 2344455544443 234555553 34
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|++||+++. +. .||++++|++|+
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~~-~~d~i~~l~~G~ 566 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-IK-NADLIIVLRDGE 566 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-HH-HCSEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-cCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999986 58999999999874 54 599999999999
Q ss_pred EEEEcChhhHHH
Q 039035 240 LMFQGPPKEVTL 251 (646)
Q Consensus 240 iv~~g~~~~~~~ 251 (646)
+++.|+++++..
T Consensus 567 i~~~g~~~~l~~ 578 (598)
T 3qf4_B 567 IVEMGKHDELIQ 578 (598)
T ss_dssp EEECSCHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.8e-41 Score=347.94 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=154.4
Q ss_pred ceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 10 GGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 10 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
..|+++||++.. +.+|+|+||++++||+++|+||||||||||||+|+|+++|++ |+|.++|
T Consensus 39 ~~l~~~~l~~~~--------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~--G~I~~~g--- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE--GKIKHSG--- 99 (290)
T ss_dssp -----------C--------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEE--EEEECCS---
T ss_pred ceEEEEEEEEcC--------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--cEEEECC---
Confidence 368899998741 259999999999999999999999999999999999999876 9999988
Q ss_pred CcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccc-------cccccCCCCCCC
Q 039035 90 SPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTR-------NTHIGDEGTRGV 162 (646)
Q Consensus 90 ~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~L 162 (646)
.++||+|++.+++. ||+||+. +. . ... .++++.++.+++.+.. ++.++ +.+.+|
T Consensus 100 -------~i~~v~Q~~~l~~~-tv~enl~-~~--~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~L 160 (290)
T 2bbs_A 100 -------RISFCSQNSWIMPG-TIKENII-GV--S---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITL 160 (290)
T ss_dssp -------CEEEECSSCCCCSS-BHHHHHH-TT--C---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCC
T ss_pred -------EEEEEeCCCccCcc-cHHHHhh-Cc--c---cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcC
Confidence 38999999988885 9999997 32 1 111 1234455555554322 22232 235789
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV-HNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.+ ++++ +|+|||++||++. .+ +.||++++|++|+++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999974 5554 4899999999975 45 469999999999999
Q ss_pred EEcChhhHH
Q 039035 242 FQGPPKEVT 250 (646)
Q Consensus 242 ~~g~~~~~~ 250 (646)
..|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-41 Score=413.82 Aligned_cols=221 Identities=26% Similarity=0.467 Sum_probs=190.9
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+|+||+++|+.+. +.++|+|||++|+|||.+||+||||||||||+++|.|+++|.+ |+|.+||.+
T Consensus 1074 ~g~I~f~nVsf~Y~~~~---------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~--G~I~iDG~d 1142 (1321)
T 4f4c_A 1074 YGKVIFKNVRFAYPERP---------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG--GEIFIDGSE 1142 (1321)
T ss_dssp CCCEEEEEEEECCTTSC---------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS--SEEEETTEE
T ss_pred CCeEEEEEEEEeCCCCC---------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC--CEEEECCEE
Confidence 35899999999997642 3569999999999999999999999999999999999999987 999999999
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGL-------TTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~ 158 (646)
+.. ..+|++++|||||+.+|+. |++|||.|+..- +..+ ++++.++++..++ .+..||.+|+..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~--~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP--SSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT--TTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred hhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC--CCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 853 5689999999999999987 999999875321 1223 3456666666655 455789998643
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.+||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|.++. + ..||+|++|++|
T Consensus 1216 -~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1216 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNG 1291 (1321)
T ss_dssp -CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSS
T ss_pred -cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECC
Confidence 5799999999999999999999999999999999999999999998865 48999999999874 4 569999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
+++++|+++++.+
T Consensus 1292 ~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMS 1304 (1321)
T ss_dssp SEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999874
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.9e-40 Score=402.43 Aligned_cols=219 Identities=28% Similarity=0.437 Sum_probs=190.1
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+++|++++|+++ .++++|+|+|+++++||.+||+||||||||||+++|.|.++|.+ |+|.+||.+
T Consensus 413 ~g~I~~~nvsF~Y~~~---------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~--G~I~idG~~ 481 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR---------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK--GKITIDGVD 481 (1321)
T ss_dssp CCCEEEEEEEECCSSS---------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE--EEEEETTEE
T ss_pred CCcEEEEEeeeeCCCC---------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc--CcccCCCcc
Confidence 4589999999999764 24579999999999999999999999999999999999999977 999999998
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-------LTTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~ 158 (646)
+.. ..+|+.||||+|++.+|.. |++|||.|+. +..+. +++.++++..+ |++..||.+|+..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGK----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTC----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred chhccHHHHhhcccccCCcceeeCC-chhHHHhhhc----ccchH----HHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 753 5678899999999999987 9999999863 12333 34555555544 3556789999755
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..||||||||++||||++++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|
T Consensus 553 -~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G 628 (1321)
T 4f4c_A 553 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNG 628 (1321)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETT
T ss_pred -CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCC
Confidence 57999999999999999999999999999999999999999999998764 8999999999863 4679999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+.+|+..
T Consensus 629 ~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 629 QVVEVGDHRALMA 641 (1321)
T ss_dssp EEEEEECHHHHHT
T ss_pred eeeccCCHHHHHH
Confidence 9999999999863
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.6e-39 Score=392.84 Aligned_cols=219 Identities=26% Similarity=0.443 Sum_probs=184.2
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.|+++|++++|+.+ .+.++|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|++
T Consensus 385 ~g~i~~~~v~~~y~~~---------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~--G~i~i~g~~ 453 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSR---------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD--GMVSIDGQD 453 (1284)
T ss_dssp CCCEEEEEEEECCSST---------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE--EEEEETTEE
T ss_pred CCeEEEEEEEEEcCCC---------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEECCEE
Confidence 4589999999999753 13469999999999999999999999999999999999999977 999999998
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-------LTTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~ 158 (646)
+.. ..+|+.+|||+|++.+++. ||+||+.++.. ..+.++ +.+.++..+ +.+..|+.+|. .
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~-~ 523 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE----DVTMDE----IEKAVKEANAYDFIMKLPHQFDTLVGE-R 523 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS----SCCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCSS-S
T ss_pred HHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC----CCCHHH----HHHHHHHhCcHHHHHhccccccccccC-C
Confidence 743 4567889999999999987 99999998742 223332 333333322 33456777774 4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..+||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ ..||+|++|++|
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G 600 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGG 600 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSS
T ss_pred CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999998875 5899999999975 45 459999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 601 ~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 601 VIVEQGNHDELMR 613 (1284)
T ss_dssp CCCCEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-38 Score=389.61 Aligned_cols=221 Identities=28% Similarity=0.474 Sum_probs=184.8
Q ss_pred CceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 9 TGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 9 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
.+.++++||+++|+++ .+..+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.+||++
T Consensus 1028 ~g~i~~~~v~~~y~~~---------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~--G~I~i~g~~ 1096 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR---------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA--GSVFLDGKE 1096 (1284)
T ss_dssp SCCEEEEEEEBCCSCG---------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE--EEEESSSSC
T ss_pred CCcEEEEEEEEECCCC---------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC--CEEEECCEE
Confidence 4589999999999753 13469999999999999999999999999999999999999977 999999998
Q ss_pred CCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCCC
Q 039035 89 TSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLG-------LTTTRNTHIGDEG 158 (646)
Q Consensus 89 ~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~ 158 (646)
+.. ..+|+.++||+|++.+++ .||+||+.++...+ ..+.++ +.+.++..+ +.+..||.+|+ .
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~--~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR--VVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-K 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC--CCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-T
T ss_pred cccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC--CCCHHH----HHHHHHHhCcHHHHHhCccccccccCC-C
Confidence 753 456888999999998876 59999998753211 123322 333344333 34556788875 4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
..+|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++ .+|+|||+++|+++. + ..||||++|++|
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNG 1245 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETB
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECC
Confidence 5689999999999999999999999999999999999999999999885 458999999999874 5 569999999999
Q ss_pred eEEEEcChhhHHH
Q 039035 239 QLMFQGPPKEVTL 251 (646)
Q Consensus 239 ~iv~~g~~~~~~~ 251 (646)
++++.|+++++..
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5e-37 Score=348.68 Aligned_cols=204 Identities=25% Similarity=0.343 Sum_probs=176.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+++|++ |+|.+
T Consensus 357 ~l~~~~l~~~~~~-------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~--G~I~~------ 415 (607)
T 3bk7_A 357 LVEYPRLVKDYGS-------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE--GKVEW------ 415 (607)
T ss_dssp EEEECCEEEECSS-------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB--SCCCC------
T ss_pred EEEEeceEEEecc-------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc--eEEEE------
Confidence 7999999988742 25899999999999999999999999999999999999987 99875
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...+||++|+....+.+||.|++....... ....++++++++.+||.+..++.+ .+|||||||||
T Consensus 416 ----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv 480 (607)
T 3bk7_A 416 ----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRV 480 (607)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHH
T ss_pred ----eeEEEEEecCccCCCCCcHHHHHHhhhccC------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHH
Confidence 246999999988888899999887641110 012356889999999987776665 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC--CeEEEEcChh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR--GQLMFQGPPK 247 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~ 247 (646)
+||++|+.+|++|||||||+|||+.++..++++|+++++ +|+|||++|||+. .+..+||++++|++ |+++..|+++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPM 559 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHH
Confidence 999999999999999999999999999999999999974 6999999999965 57889999999986 8888999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 560 ~~~~ 563 (607)
T 3bk7_A 560 GMRE 563 (607)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.8e-37 Score=345.22 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=175.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|++ ..|+++|+++++||+++|+||||||||||+++|+|+.+|++ |+|.+
T Consensus 287 ~l~~~~l~~~~~~-------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~--G~i~~------ 345 (538)
T 1yqt_A 287 LVTYPRLVKDYGS-------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE--GKIEW------ 345 (538)
T ss_dssp EEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB--CCCCC------
T ss_pred EEEEeeEEEEECC-------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--eEEEE------
Confidence 7999999988742 25899999999999999999999999999999999999977 99875
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
...+|||+|+....+.+||.|++........ ...++++++++.+|+.+..++.+ ..|||||||||
T Consensus 346 ----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv 410 (538)
T 1yqt_A 346 ----DLTVAYKPQYIKADYEGTVYELLSKIDASKL------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRV 410 (538)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHH
T ss_pred ----CceEEEEecCCcCCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHH
Confidence 2459999999887788999998865311110 11356788999999987666554 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC--CeEEEEcChh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR--GQLMFQGPPK 247 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~ 247 (646)
+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||++++|++ |+++..|+++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHH
Confidence 999999999999999999999999999999999999974 6999999999965 68889999999996 7888999998
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 490 ~~~~ 493 (538)
T 1yqt_A 490 GMRE 493 (538)
T ss_dssp EHHH
T ss_pred HHHh
Confidence 8764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2e-36 Score=339.47 Aligned_cols=205 Identities=23% Similarity=0.313 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++++|+++.|++ ..|+++|+++++||+++|+||||||||||+++|+|+++|++ |+|.+++
T Consensus 269 ~l~~~~l~~~~~~-------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~--G~i~~~~---- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLGD-------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE--GSVTPEK---- 329 (538)
T ss_dssp EEEECCEEEEETT-------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB--CCEESSC----
T ss_pred eEEEcceEEEECC-------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--cEEEECC----
Confidence 6889999988743 25778899999999999999999999999999999999987 9998764
Q ss_pred cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV 170 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 170 (646)
+.++|++|+......+||+|++.+..... .. .....++++++.+||.+..++.+ .+|||||||||
T Consensus 330 -----~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv 394 (538)
T 3ozx_A 330 -----QILSYKPQRIFPNYDGTVQQYLENASKDA---LS--TSSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKL 394 (538)
T ss_dssp -----CCEEEECSSCCCCCSSBHHHHHHHHCSST---TC--TTSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHH
T ss_pred -----eeeEeechhcccccCCCHHHHHHHhhhhc---cc--hhHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 35899999977777889999998742111 11 11245788999999987766654 57999999999
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC--CeEEEEcChh
Q 039035 171 SIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR--GQLMFQGPPK 247 (646)
Q Consensus 171 ~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~ 247 (646)
+||++|+.+|++|||||||+|||+.++.+++++|+++++ .|+|||++|||+. ++..+||||++|++ |.....+++.
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChH
Confidence 999999999999999999999999999999999999986 5999999999965 68889999999986 5666677765
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
++.
T Consensus 474 ~~~ 476 (538)
T 3ozx_A 474 TLK 476 (538)
T ss_dssp EHH
T ss_pred HHH
Confidence 543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.2e-35 Score=343.24 Aligned_cols=208 Identities=25% Similarity=0.353 Sum_probs=140.6
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCc-----ceeEEEECCee
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLL---------------------DGLAGRIASGS-----LKGKVTLDGKE 88 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL---------------------~~L~G~~~~~~-----~~G~I~~~g~~ 88 (646)
.+.+|+||||+|++||+++|+||||||||||+ ++++|+..|+. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 88888887762 13677777765
Q ss_pred CCcccccccEEEEccCCC-------------------CCCCCCHHHHHHHHHHccCCCCCHHHHH------HHHHHHHHH
Q 039035 89 TSPSLIKRTSAYIMQEDR-------------------LFPMLTVFETLMFAADFRLGPISWSDKK------QRVENLVDQ 143 (646)
Q Consensus 89 ~~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~------~~v~~~l~~ 143 (646)
... ..++.+|+|+|... .++.+||+||+.+...+..........+ ....++++.
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 432 12344555555432 3467899999987543221111100000 111245888
Q ss_pred cCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 039035 144 LGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP--LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ 220 (646)
Q Consensus 144 lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~--lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 220 (646)
+||.+. .++. +.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~-----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCB-----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCC-----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999754 4554 45799999999999999999998 999999999999999999999999999889999999999
Q ss_pred CcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 221 PSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 221 ~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
+. .+ ..||++++| ++|++++.|+++++.
T Consensus 264 ~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-HH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 75 34 569999999 899999999998875
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=331.02 Aligned_cols=192 Identities=21% Similarity=0.238 Sum_probs=162.8
Q ss_pred ccccceeEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCC
Q 039035 37 DLLNKITGDAPKG-----CITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPML 111 (646)
Q Consensus 37 ~iL~~vs~~i~~G-----e~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 111 (646)
.+++++|+++++| |+++|+||||||||||+++|+|+++|++ |+. +. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~--G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE--GQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB--CCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC--CcC------cc----CCcEEEecccccccCCc
Confidence 4789999999999 7899999999999999999999999986 752 11 34699999997766667
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCC
Q 039035 112 TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSG 191 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsg 191 (646)
||+|++... .+. ... ..+.++++++.++|.+.+++. +.+|||||||||+||++|+.+|++|||||||+|
T Consensus 429 tv~e~~~~~--~~~-~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 429 TVRQLFFKK--IRG-QFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp BHHHHHHHH--CSS-TTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred cHHHHHHHH--hhc-ccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 999987542 221 111 124678899999998776665 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC--CeEEEEcChhhHHHH
Q 039035 192 LDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR--GQLMFQGPPKEVTLH 252 (646)
Q Consensus 192 LD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~~~~~~ 252 (646)
||+.++..++++|+++++ .|+|||++|||+. ++..+|||+++|++ |+++..|+|+++..-
T Consensus 498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999974 6999999999965 68889999999997 899999999988653
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-35 Score=337.35 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=158.3
Q ss_pred EeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE---------EEC
Q 039035 15 SNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV---------TLD 85 (646)
Q Consensus 15 ~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I---------~~~ 85 (646)
+||+++|+.. ..+|+|+| .+++||+++|+||||||||||||+|+|+++|++ |++ .++
T Consensus 95 ~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~--G~~~~~~~~~~~~~~ 160 (607)
T 3bk7_A 95 EDCVHRYGVN-----------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL--CEDNDSWDNVIRAFR 160 (607)
T ss_dssp GSEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT--TTTCCCHHHHHHHTT
T ss_pred CCeEEEECCC-----------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC--CccccccchhhheeC
Confidence 7778777421 24899999 999999999999999999999999999999987 885 456
Q ss_pred CeeCCc---c--cccccEEEEccCCCCCC---CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 039035 86 GKETSP---S--LIKRTSAYIMQEDRLFP---MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDE 157 (646)
Q Consensus 86 g~~~~~---~--~~~~~i~yv~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 157 (646)
|.++.. . ..+..+++++|.....+ ..||.|++... . ..++++++++.+||++..++.+
T Consensus 161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~-----~~~~~~~~L~~lgL~~~~~~~~--- 226 (607)
T 3bk7_A 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------D-----EVGKFEEVVKELELENVLDREL--- 226 (607)
T ss_dssp TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------C-----CSSCHHHHHHHTTCTTGGGSBG---
T ss_pred CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------H-----HHHHHHHHHHHcCCCchhCCCh---
Confidence 654421 0 11345789988743322 13999998531 1 1245788999999988777665
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 158 GTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+..++|++++|++
T Consensus 227 --~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~ 303 (607)
T 3bk7_A 227 --HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG 303 (607)
T ss_dssp --GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence 579999999999999999999999999999999999999999999999888999999999965 67889999999986
Q ss_pred Ce
Q 039035 238 GQ 239 (646)
Q Consensus 238 G~ 239 (646)
+.
T Consensus 304 ~~ 305 (607)
T 3bk7_A 304 EP 305 (607)
T ss_dssp CT
T ss_pred Cc
Confidence 53
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-35 Score=332.98 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=158.4
Q ss_pred eEEE-EeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE-------
Q 039035 11 GLGF-SNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV------- 82 (646)
Q Consensus 11 ~l~~-~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I------- 82 (646)
..++ +||+++|++. ..+|+|+| .+++||+++|+||||||||||||+|+|+++|++ |++
T Consensus 20 ~~~~~~~ls~~yg~~-----------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~--G~~~~~~~~~ 85 (538)
T 1yqt_A 20 MEQLEEDCVHRYGVN-----------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL--CGDNDSWDGV 85 (538)
T ss_dssp ----CCCEEEECSTT-----------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT--TTTCCSHHHH
T ss_pred ChhHhcCcEEEECCc-----------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC--CccCcchhhh
Confidence 3455 5788888431 24899999 999999999999999999999999999999987 885
Q ss_pred --EECCeeCCc---c--cccccEEEEccCCCCCCC---CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 039035 83 --TLDGKETSP---S--LIKRTSAYIMQEDRLFPM---LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNT 152 (646)
Q Consensus 83 --~~~g~~~~~---~--~~~~~i~yv~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 152 (646)
.++|.++.. . ..+..+++++|+....+. .||.|++... +..++++++++.+||++..++
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~-----------~~~~~~~~~l~~lgl~~~~~~ 154 (538)
T 1yqt_A 86 IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA-----------DETGKLEEVVKALELENVLER 154 (538)
T ss_dssp HHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH-----------CSSSCHHHHHHHTTCTTTTTS
T ss_pred HHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh-----------hHHHHHHHHHHHcCCChhhhC
Confidence 356654321 0 112458899987544332 3899987531 012457889999999877666
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeE
Q 039035 153 HIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 153 ~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v 232 (646)
.+ .+|||||||||+||+||+.+|++|||||||++||+.++..+++.|++++++|+|||++||+.. ++.++||++
T Consensus 155 ~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri 228 (538)
T 1yqt_A 155 EI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDII 228 (538)
T ss_dssp BG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEE
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 54 579999999999999999999999999999999999999999999999888999999999965 688899999
Q ss_pred EEEeCCe
Q 039035 233 IILARGQ 239 (646)
Q Consensus 233 ~~L~~G~ 239 (646)
++|++|.
T Consensus 229 ~vl~~~~ 235 (538)
T 1yqt_A 229 HVVYGEP 235 (538)
T ss_dssp EEEEEET
T ss_pred EEEcCcc
Confidence 9998653
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.2e-34 Score=333.47 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|...|++++|++ +.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+..
T Consensus 435 ~L~~~~ls~~yg~------------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~ 492 (986)
T 2iw3_A 435 DLCNCEFSLAYGA------------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQ 492 (986)
T ss_dssp EEEEEEEEEEETT------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCT
T ss_pred eeEEeeEEEEECC------------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccc
Confidence 7888899999953 369999999999999999999999999999999995 333 443332
Q ss_pred cccccccEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCChHHHH
Q 039035 91 PSLIKRTSAYIMQED-RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerq 168 (646)
. ...++|++|+. .+++.+||.|++.+ .. .+. +++++++++.+||. +..++++ .+|||||||
T Consensus 493 ~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQ 555 (986)
T 2iw3_A 493 E---ECRTVYVEHDIDGTHSDTSVLDFVFE--SG--VGT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKM 555 (986)
T ss_dssp T---TSCEEETTCCCCCCCTTSBHHHHHHT--TC--SSC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHH
T ss_pred c---ceeEEEEcccccccccCCcHHHHHHH--hh--cCH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHH
Confidence 1 12378999984 67889999999975 11 111 46789999999995 5556655 479999999
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE-EEcChh
Q 039035 169 RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM-FQGPPK 247 (646)
Q Consensus 169 Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~ 247 (646)
||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||++||++. .+.++||++++|++|+++ +.|+++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHH
Confidence 99999999999999999999999999999999999998 5899999999964 688899999999999997 789988
Q ss_pred hHHH
Q 039035 248 EVTL 251 (646)
Q Consensus 248 ~~~~ 251 (646)
++..
T Consensus 632 e~~~ 635 (986)
T 2iw3_A 632 EFVK 635 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.2e-34 Score=337.86 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=162.5
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||+++|++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.
T Consensus 671 mL~v~nLs~~Y~g~----------~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~s--G~I~~~~~--- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT----------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS--GEVYTHEN--- 735 (986)
T ss_dssp EEEEEEEEECCTTC----------SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSE--EEEEECTT---
T ss_pred eEEEEeeEEEeCCC----------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc--eEEEEcCc---
Confidence 69999999998532 2468999999999999999999999999999999999999977 99999862
Q ss_pred cccccccEEEEccCCCC----CCCCCHHHHHHHHHHcc------------------------------------------
Q 039035 91 PSLIKRTSAYIMQEDRL----FPMLTVFETLMFAADFR------------------------------------------ 124 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l----~~~lTv~e~l~~~~~~~------------------------------------------ 124 (646)
..+||++|+... ....|++|++.+.....
T Consensus 736 -----~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~ 810 (986)
T 2iw3_A 736 -----CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810 (986)
T ss_dssp -----CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEE
T ss_pred -----cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhh
Confidence 248888887521 23457777776531100
Q ss_pred -----------------------CCCCC----------------------------------HHHHHHHHHHHHHHcCCC
Q 039035 125 -----------------------LGPIS----------------------------------WSDKKQRVENLVDQLGLT 147 (646)
Q Consensus 125 -----------------------~~~~~----------------------------------~~~~~~~v~~~l~~lgL~ 147 (646)
....+ ....+++++++++.+||.
T Consensus 811 ~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~ 890 (986)
T 2iw3_A 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLD 890 (986)
T ss_dssp ETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCC
T ss_pred hcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCC
Confidence 00000 001135688999999997
Q ss_pred cc--ccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHH
Q 039035 148 TT--RNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRI 225 (646)
Q Consensus 148 ~~--~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 225 (646)
+. .++.+ ++|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++. .+
T Consensus 891 ~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v 961 (986)
T 2iw3_A 891 PEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FT 961 (986)
T ss_dssp HHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HH
T ss_pred chhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HH
Confidence 42 34444 579999999999999999999999999999999999999999888765 679999999964 57
Q ss_pred HhhcCeEEEEeCCeEEEEcC
Q 039035 226 QLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 226 ~~~~D~v~~L~~G~iv~~g~ 245 (646)
.++||++++|++|+++..|+
T Consensus 962 ~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 962 KNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTTCCEEECCBTTBCCC---
T ss_pred HHhCCEEEEEECCEEEEeCC
Confidence 78999999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.1e-32 Score=318.70 Aligned_cols=197 Identities=29% Similarity=0.414 Sum_probs=150.2
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHH----------------------cCCCCCcceeEEEECCeeCCccc
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA----------------------GRIASGSLKGKVTLDGKETSPSL 93 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~----------------------G~~~~~~~~G~I~~~g~~~~~~~ 93 (646)
..+|+|||++|++||+++|+||||||||||+++|. |+.. ..|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~---~~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH---LDKVIDIDQSPIGRTP 411 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG---CSEEEECCSSCSCSST
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc---cCceeEeccccCCCCC
Confidence 45899999999999999999999999999998764 2222 2378888887653100
Q ss_pred ---c-----------------------------------------cccEEEEccCCCCCC--------------------
Q 039035 94 ---I-----------------------------------------KRTSAYIMQEDRLFP-------------------- 109 (646)
Q Consensus 94 ---~-----------------------------------------~~~i~yv~Q~~~l~~-------------------- 109 (646)
. .+..|++.|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 0 011244444333322
Q ss_pred ------------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHH
Q 039035 110 ------------MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDI 176 (646)
Q Consensus 110 ------------~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L 176 (646)
.+||.||+.+.... ...+++.+.++.+||... .+ ..+.+|||||||||+|||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~~--------~~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFASI--------PKIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTTC--------HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHHh--------hhHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHH
Confidence 47999999874321 123456778889999642 33 34568999999999999999
Q ss_pred HhCCC---EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChh
Q 039035 177 IHGPP---LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPK 247 (646)
Q Consensus 177 ~~~P~---lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~ 247 (646)
+.+|+ +|||||||+|||+.++.+++++|++++++|+|||++|||+. .+ +.||++++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 99874 99999999999999999999999999988999999999975 34 679999999 899999999999
Q ss_pred hHH
Q 039035 248 EVT 250 (646)
Q Consensus 248 ~~~ 250 (646)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 884
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-32 Score=308.92 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=144.4
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE-----------EECCeeCCc---cccccc--EEE
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV-----------TLDGKETSP---SLIKRT--SAY 100 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~g~~~~~---~~~~~~--i~y 100 (646)
..|++++ .+++||+++|+||||||||||||+|+|+++|++ |+| .+.|.++.. ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~--G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL--GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT--TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC--ceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 3577776 689999999999999999999999999999987 887 233332210 001111 123
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHH
Q 039035 101 IMQEDRL------FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGV 174 (646)
Q Consensus 101 v~Q~~~l------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~ 174 (646)
.+|.... -+..++.+++.... ++..++++++++.+||.+..++.+ .+|||||||||+||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM---------EKSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIGM 234 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC---------CSCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh---------hhHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHHH
Confidence 3443211 12235666554311 012357889999999988777665 579999999999999
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEE
Q 039035 175 DIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 175 ~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++..++|++++|++|..++
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999988999999999965 6888999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.5e-32 Score=306.22 Aligned_cols=175 Identities=23% Similarity=0.344 Sum_probs=139.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE-----------EECCeeCCc---ccc--cccEEEEccC----C
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV-----------TLDGKETSP---SLI--KRTSAYIMQE----D 105 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-----------~~~g~~~~~---~~~--~~~i~yv~Q~----~ 105 (646)
.++||++||+||||||||||||+|+|+++|++ |+| .++|+++.. ... ...+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~--G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNF--GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCT--TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 46999999999999999999999999999987 988 577765521 001 1123344443 3
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 039035 106 RLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFL 185 (646)
Q Consensus 106 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllL 185 (646)
.++. .||+|++... +.+++++++++.+|+.+..++.+ ++|||||||||+||+||+.+|++|||
T Consensus 100 ~~~~-~~v~~~l~~~-----------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFLK-GTVNEILTKI-----------DERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTCC-SBHHHHHHHH-----------CCSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhcc-CcHHHHhhcc-----------hhHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3333 3888866421 11235788999999988777665 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEE
Q 039035 186 DEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLM 241 (646)
Q Consensus 186 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv 241 (646)
||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||++++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 999999999975 688999999999876543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4.7e-30 Score=298.67 Aligned_cols=208 Identities=28% Similarity=0.419 Sum_probs=157.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHH-HHcCC-------CC-------
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDG-LAGRI-------AS------- 75 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~-L~G~~-------~~------- 75 (646)
.|+++|+++ ..|+|||++|++||+++|+|+||||||||+++ |+|.+ ++
T Consensus 502 ~L~v~~l~~-----------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~ 564 (842)
T 2vf7_A 502 WLELNGVTR-----------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDE 564 (842)
T ss_dssp EEEEEEEEE-----------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------
T ss_pred eEEEEeeee-----------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccc
Confidence 688888863 26999999999999999999999999999996 76543 22
Q ss_pred ---------Cccee-------EEEECCeeCCccc-------------cc---------ccEEEEcc--------------
Q 039035 76 ---------GSLKG-------KVTLDGKETSPSL-------------IK---------RTSAYIMQ-------------- 103 (646)
Q Consensus 76 ---------~~~~G-------~I~~~g~~~~~~~-------------~~---------~~i~yv~Q-------------- 103 (646)
...+| .|.++|.++.... +| +..||.++
T Consensus 565 ~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c 644 (842)
T 2vf7_A 565 DPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHC 644 (842)
T ss_dssp -------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTT
T ss_pred cccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccc
Confidence 11357 7899998764210 01 11122221
Q ss_pred --------CCCCCC--------------------------------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 039035 104 --------EDRLFP--------------------------------MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQ 143 (646)
Q Consensus 104 --------~~~l~~--------------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~ 143 (646)
+..+++ .+|+.|++.|.. . ....+++.++++.
T Consensus 645 ~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~-----~---~~~~~~~~~~L~~ 716 (842)
T 2vf7_A 645 QGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA-----D---ESAIFRALDTLRE 716 (842)
T ss_dssp TTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT-----T---SHHHHHHHHHHHH
T ss_pred cCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh-----c---chHHHHHHHHHHH
Confidence 112222 235555544421 1 1223578899999
Q ss_pred cCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 039035 144 LGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHG---PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIH 219 (646)
Q Consensus 144 lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~---P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H 219 (646)
+||... .+.. +..|||||||||+||++|+.+ |++|||||||+|||+.+..+++++|++++++|.|||+++|
T Consensus 717 ~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisH 791 (842)
T 2vf7_A 717 VGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEH 791 (842)
T ss_dssp TTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 999763 3433 468999999999999999996 7999999999999999999999999999988999999999
Q ss_pred CCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 220 QPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 220 ~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
++. ++ +.||++++| ++|++++.|+++++.
T Consensus 792 dl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 792 KMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 964 46 789999999 789999999998874
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=2.1e-30 Score=301.95 Aligned_cols=198 Identities=29% Similarity=0.444 Sum_probs=154.2
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC---------CCCc---cee------EEEECCeeCCcc------
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA-GRI---------ASGS---LKG------KVTLDGKETSPS------ 92 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~---------~~~~---~~G------~I~~~g~~~~~~------ 92 (646)
.|+|||++|++||+++|+|+||||||||+++|. |.+ .++. +.| .|.++|.++...
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 699999999999999999999999999999853 211 2221 234 588998876310
Q ss_pred -------cc---------cccEEEEccCCCCC----------------------C-------------------------
Q 039035 93 -------LI---------KRTSAYIMQEDRLF----------------------P------------------------- 109 (646)
Q Consensus 93 -------~~---------~~~i~yv~Q~~~l~----------------------~------------------------- 109 (646)
.. .+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 00 13357777753221 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHHHhCC-
Q 039035 110 -------MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP- 180 (646)
Q Consensus 110 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P- 180 (646)
.+||.|++.|... . . ..+++.++++.+||.. ..+.. +.+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~-----~-~--~~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~ 865 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS-----I-P--KIKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSN 865 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS-----C-H--HHHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCC
T ss_pred CCHHHhhhcCHHHHHHHHhc-----c-h--hHHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 4678888776321 1 1 1234678999999976 44444 4579999999999999999865
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 181 --PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 181 --~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||++++| ++|++++.|+++++.
T Consensus 866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999965 44 689999999 789999999999875
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-29 Score=296.33 Aligned_cols=202 Identities=27% Similarity=0.429 Sum_probs=155.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCCc----ce------eEEEECCeeCCccc---
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLL---------DGLAGRIASGS----LK------GKVTLDGKETSPSL--- 93 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL---------~~L~G~~~~~~----~~------G~I~~~g~~~~~~~--- 93 (646)
...|+|||+++++|++++|+||||||||||+ +.+.+...+.. .+ +.+.+++.++....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 44554432211 11 34566655432100
Q ss_pred -----------------------------------------ccccEEEEccCCCCCCC----------------------
Q 039035 94 -----------------------------------------IKRTSAYIMQEDRLFPM---------------------- 110 (646)
Q Consensus 94 -----------------------------------------~~~~i~yv~Q~~~l~~~---------------------- 110 (646)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788887766653
Q ss_pred ----------CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCC
Q 039035 111 ----------LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP 180 (646)
Q Consensus 111 ----------lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P 180 (646)
+||.|++.|.... ...+++.++|+.+||.... + ++.+.+|||||||||+||++|+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~--------~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI--------PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC--------HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc--------hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCC
Confidence 6888888774321 2235678899999996421 1 2345689999999999999999876
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 181 ---PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 181 ---~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
++|||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ ..||+|++| ++|++++.|+++++..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 699999999999999999999999999988999999999974 45 569999999 8999999999999853
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=1.5e-29 Score=295.66 Aligned_cols=199 Identities=27% Similarity=0.403 Sum_probs=151.2
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC-----CCc---cee------EEEECCeeCCcc------
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA-G----RIA-----SGS---LKG------KVTLDGKETSPS------ 92 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G----~~~-----~~~---~~G------~I~~~g~~~~~~------ 92 (646)
.|+|||++|++||+++|+|+||||||||+++|. | .+. ++. +.| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 221 221 123 356666665210
Q ss_pred -------c---------ccccEEEEccCCCCC----------------------C-------------------------
Q 039035 93 -------L---------IKRTSAYIMQEDRLF----------------------P------------------------- 109 (646)
Q Consensus 93 -------~---------~~~~i~yv~Q~~~l~----------------------~------------------------- 109 (646)
. ..+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0 013357777643221 1
Q ss_pred -------CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHHHHhCC-
Q 039035 110 -------MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP- 180 (646)
Q Consensus 110 -------~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P- 180 (646)
.+||.|++.|... . . ..+++.++++.+||.. ..+.. +.+|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~-----~-~--~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~ 883 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP-----I-A--GVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRST 883 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT-----C-H--HHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCC
T ss_pred CCHHHHhhccHHHHHHHhhc-----c-h--HHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCC
Confidence 3577777776332 1 1 1234678999999975 34444 4579999999999999999865
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 181 --PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 181 --~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||++++| ++|++++.|+++++..
T Consensus 884 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999999999988999999999965 44 689999999 6899999999998754
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=1.2e-28 Score=268.67 Aligned_cols=204 Identities=19% Similarity=0.260 Sum_probs=148.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC------------------------------------cce
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG------------------------------------SLK 79 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~------------------------------------~~~ 79 (646)
..+++++++++++| +++|+|||||||||||++|.++..+. .-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 35899999999999 99999999999999999997766420 113
Q ss_pred eEEEECCeeCCcc---cc-cccEEEEccCCCCCCCCCHHHHHHHHHHccC-----------------------CC-C---
Q 039035 80 GKVTLDGKETSPS---LI-KRTSAYIMQEDRLFPMLTVFETLMFAADFRL-----------------------GP-I--- 128 (646)
Q Consensus 80 G~I~~~g~~~~~~---~~-~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~-----------------------~~-~--- 128 (646)
|++++||++++.. .+ +..+++++|++.++.. +..+...|.-.... .. .
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8999999998642 22 3448999999876543 55544444221100 00 0
Q ss_pred -------------------------------CHHHHHHHHHHHHHHcCCCccc----------------cc---cccC--
Q 039035 129 -------------------------------SWSDKKQRVENLVDQLGLTTTR----------------NT---HIGD-- 156 (646)
Q Consensus 129 -------------------------------~~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~-- 156 (646)
......+.+++.++.+++.+.. +. .+..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0001123456667777765310 00 1110
Q ss_pred ----CCCCC-CChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 157 ----EGTRG-VSGGERRRVSIGVDIIHGP--PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 157 ----~~~~~-LSgGerqRv~ia~~L~~~P--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +.+.|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhc
Confidence 11222 6999999999999999999 9999999999999999999999999998 6999999999973 45789
Q ss_pred CeEEEE----eCCeEEEEc
Q 039035 230 DHLIIL----ARGQLMFQG 244 (646)
Q Consensus 230 D~v~~L----~~G~iv~~g 244 (646)
|++++| .+|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-32 Score=296.07 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=149.7
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee-E-EEECCeeCCcccccccEEEEccCCC---CCCCCCH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG-K-VTLDGKETSPSLIKRTSAYIMQEDR---LFPMLTV 113 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~-I~~~g~~~~~~~~~~~i~yv~Q~~~---l~~~lTv 113 (646)
+.++|+++++|++++|+||||||||||+|+|+|+..+++ | + |.++|. .++.++||+|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~--G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFN--AYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHH--CCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccC--CceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 357899999999999999999999999999999998866 9 9 999982 3577999999984 4556799
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH--HHhCCCE----EEEeC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVD--IIHGPPL----LFLDE 187 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~--L~~~P~l----llLDE 187 (646)
+||+ |+....... . ..+++.++++.+|+++..+ +.+|||||||||+||++ |+.+|++ |||||
T Consensus 200 ~eni-~~~~~~~~~-~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 200 QLPT-WGQSLTSGA-T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp TCTT-CSCBCBSSC-C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhhh-cccccccCc-c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 9998 654321111 1 1234567788889876554 35799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc--H---HHHhhcCe-----EEEEe-CCeEEEEcChhhH
Q 039035 188 -PTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS--S---RIQLLLDH-----LIILA-RGQLMFQGPPKEV 249 (646)
Q Consensus 188 -PtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~g~~~~~ 249 (646)
||+|||+. ...+.+++++ .|+|+|+++|+.. . ++.+++|+ +++|+ +|+++ .|+++++
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999998 4444444443 3889999999976 1 46689999 99999 99999 9988765
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=1.5e-29 Score=250.35 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=103.5
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC--cccccccEEEEccCCCCCCCC
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS--PSLIKRTSAYIMQEDRLFPML 111 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~--~~~~~~~i~yv~Q~~~l~~~l 111 (646)
+++.+|+|| ++||+++|+||||||||||+++|+|+ +|++ |+|.. .++. ....++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~--G~I~~--~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS--KQVSR--IILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT--TSCSE--EEEEECSCCTTCCCCSSCC--------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC--Ceeee--EEecCCchhhhcceEEecCCH------
Confidence 346799996 89999999999999999999999999 8866 88842 2221 123467899999976
Q ss_pred CHHHHH-HHHH----HccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEe
Q 039035 112 TVFETL-MFAA----DFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLD 186 (646)
Q Consensus 112 Tv~e~l-~~~~----~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLD 186 (646)
+||+ .+.. .+.. ... .++++++++. |+ ||||||+||++|+.+|++||||
T Consensus 76 --~enl~~~~~~~~~~~~~-~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRD-MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp ------CTTTHHHHHHHTT-TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred --HHHHHHHHHHHHHHHHH-hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEe
Confidence 4444 2211 1110 011 1345555554 32 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
|||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999998 6799999 999964
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.8e-25 Score=239.83 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=77.3
Q ss_pred CCCCCCChHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC
Q 039035 157 EGTRGVSGGERRRVSIGVDII------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 157 ~~~~~LSgGerqRv~ia~~L~------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 230 (646)
..+.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 456789999999999999999 699999999999999999999999999999888999999999974 367899
Q ss_pred eEEEEeCCeEEE
Q 039035 231 HLIILARGQLMF 242 (646)
Q Consensus 231 ~v~~L~~G~iv~ 242 (646)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.1e-25 Score=235.36 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=73.9
Q ss_pred CCCCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeE-
Q 039035 158 GTRGVSGGERRRVSIGVDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHL- 232 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v- 232 (646)
.+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.|||++||++. +.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 5899999999963 56789987
Q ss_pred -EEEeCCe-EEEEcChhh
Q 039035 233 -IILARGQ-LMFQGPPKE 248 (646)
Q Consensus 233 -~~L~~G~-iv~~g~~~~ 248 (646)
++|.+|+ .+.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 8888875 444455544
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=1.4e-27 Score=258.50 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=139.1
Q ss_pred cccccceeEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCccccc
Q 039035 36 VDLLNKITGDAPKGC--------------------ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIK 95 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge--------------------~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~ 95 (646)
+.+|++||+++++|+ ++||+||||||||||+|+|+|+.+|++ |+|.++|.+.+ +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~--GsI~~~g~~~t----~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE--GAAKTGVVEVT----M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST--TSCCCCC--------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC--ceEEECCeecc----e
Confidence 568999999999999 999999999999999999999999987 99999997653 1
Q ss_pred ccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChH--HHHHHHHH
Q 039035 96 RTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGG--ERRRVSIG 173 (646)
Q Consensus 96 ~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~ia 173 (646)
+ +|++|++ .++.+|+.|++.+.. . +.+++++++.+++.+.. ..+ . +||| ||||+.||
T Consensus 110 ~--~~v~q~~-~~~~ltv~D~~g~~~----~-------~~~~~~~L~~~~L~~~~-~~~-----~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 E--RHPYKHP-NIPNVVFWDLPGIGS----T-------NFPPDTYLEKMKFYEYD-FFI-----I-ISATRFKKNDIDIA 168 (413)
T ss_dssp C--CEEEECS-SCTTEEEEECCCGGG----S-------SCCHHHHHHHTTGGGCS-EEE-----E-EESSCCCHHHHHHH
T ss_pred e--EEecccc-ccCCeeehHhhcccc----h-------HHHHHHHHHHcCCCccC-CeE-----E-eCCCCccHHHHHHH
Confidence 2 7899985 577889998875431 0 13578899999987542 221 2 9999 99999999
Q ss_pred HHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEecCCcH-HHHhhcCeEE
Q 039035 174 VDIIH----------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIA-----RSG----STVILTIHQPSS-RIQLLLDHLI 233 (646)
Q Consensus 174 ~~L~~----------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~~H~~~~-~i~~~~D~v~ 233 (646)
++|+. +|++++|||||+|||+..+.++++.++++. +.| .+|++++|+... .+.+++|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 323 678899998653 3677777764
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.3e-25 Score=215.16 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=101.0
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCC-CCCCCHHHHHHH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRL-FPMLTVFETLMF 119 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l-~~~lTv~e~l~~ 119 (646)
||||++++||+++|+||||||||||++++.+ |...+++ ..+ .|+++|+..- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~-----d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS-----DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH-----HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc-----HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 1111111 112 2566776421 00001111111
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----
Q 039035 120 AADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST---- 195 (646)
Q Consensus 120 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~---- 195 (646)
..... ....|.....+.. ...|||||||++||++++.+|++|+|||||+|||+.
T Consensus 64 ---------------~~~~~-~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVSK-RLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHHH-HHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHHH-HHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11111 2234554333322 346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 196 ------------SAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 196 ------------~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
.+.++.+.|++++++|.|+|++||++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 668899999999878999999999965
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=3.2e-24 Score=207.04 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=101.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP 127 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 127 (646)
.++|+||||||||||+++|+|++. |.++|.+... ...++.+||++|+. ++.+++ + + +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~--~~~- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-S--SKF- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-E--ETT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-H--hhc-
Confidence 589999999999999999999874 2233432211 13457799999975 222322 0 0 000
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHH
Q 039035 128 ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVD-----IIHGPPLLFLDE--PTSGLDSTSAYSV 200 (646)
Q Consensus 128 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~-----L~~~P~lllLDE--PtsgLD~~~~~~i 200 (646)
.. -.+..+ ..+..||||||||++||++ ++.+|++++||| ||++||+.....+
T Consensus 64 ~~----------------~~~~~~-----~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 64 FT----------------SKKLVG-----SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp CC----------------CSSEET-----TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred CC----------------cccccc-----ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 001122 3345799999999999996 999999999999 9999999999999
Q ss_pred HHHHHHHHHcCCEEEEEec--CCcHHHHhhcCeEEEEeCCeEEE
Q 039035 201 IEKVHNIARSGSTVILTIH--QPSSRIQLLLDHLIILARGQLMF 242 (646)
Q Consensus 201 ~~~l~~l~~~g~tii~~~H--~~~~~i~~~~D~v~~L~~G~iv~ 242 (646)
.+.+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 123 ~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 123 RQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 888875 4778999986 234567788888 5566654
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=1.3e-27 Score=248.89 Aligned_cols=169 Identities=17% Similarity=0.213 Sum_probs=128.9
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.|+++||++.|+ ..+|+++|+++++|++++|+||||||||||+++|+|++ + |+|.
T Consensus 101 ~i~~~~vs~~y~-------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~--G~I~------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF-------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G--GSVL------- 155 (305)
T ss_dssp HHHHTTCCHHHH-------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T--CEEE-------
T ss_pred eEEEEEEEEEcC-------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C--ceEE-------
Confidence 477778877663 25899999999999999999999999999999999998 3 8883
Q ss_pred cccccccEEEEccCCCCCCCCCHHH-HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH
Q 039035 91 PSLIKRTSAYIMQEDRLFPMLTVFE-TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR 169 (646)
Q Consensus 91 ~~~~~~~i~yv~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 169 (646)
+|++|++.+++. |++| |+.+.. ..+. .+.+.++.+ |.+..| ...||||||||
T Consensus 156 --------~~v~q~~~lf~~-ti~~~ni~~~~-----~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR 208 (305)
T 2v9p_A 156 --------SFANHKSHFWLA-SLADTRAALVD-----DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK 208 (305)
T ss_dssp --------CGGGTTSGGGGG-GGTTCSCEEEE-----EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC
T ss_pred --------EEecCccccccc-cHHHHhhccCc-----cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH
Confidence 467787777764 7776 665521 1111 345556654 444333 35799999999
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
||+|+.+|+||| ||+||+.+...+.. .+|++.. .+.+|++ +|++|++++.|+++++
T Consensus 209 ---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 209 ---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHH
T ss_pred ---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHH
Confidence 999999999999 99999999888862 1888753 4789999 9999999999999988
Q ss_pred HHHHHh
Q 039035 250 TLHVNR 255 (646)
Q Consensus 250 ~~~f~~ 255 (646)
...|.+
T Consensus 265 ~~~y~~ 270 (305)
T 2v9p_A 265 KSFFVR 270 (305)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=7.8e-27 Score=230.57 Aligned_cols=181 Identities=17% Similarity=0.110 Sum_probs=122.2
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
...+++| .++++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+.. ...++.++|++|++.+++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 3568888 69999999999999999999999999999853 2233322222211 12356799999998888888887
Q ss_pred HHHHHHHHc----cCCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 039035 115 ETLMFAADF----RLGPISWSDKKQRVENL------VDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLF 184 (646)
Q Consensus 115 e~l~~~~~~----~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lll 184 (646)
|++...... ...+.++++.++++++. ++.+|+.+.++.. ++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-----PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-----TTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-----CCcEE-----------EEEECCCHHH
Confidence 776421100 11123344555566665 5555665444433 34577 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 185 LDEPTSGL----DSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 185 LDEPtsgL----D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
|||||+|+ |+..+.++.+.++++++ .|.|+|++||++. ++.++||++++|..
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 99999998 78899999999999985 5899999999965 68899999999853
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=3.9e-24 Score=223.35 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=135.5
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------cc--cccEEEEccCCC-CC
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------LI--KRTSAYIMQEDR-LF 108 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~ 108 (646)
++++|+++++|++++|+||||||||||+++|+|++++.. |+|.++|.+.... .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~--g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG--TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 357899999999999999999999999999999998876 9999999886421 12 346999999998 89
Q ss_pred CCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCC--EEEEe
Q 039035 109 PMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP--LLFLD 186 (646)
Q Consensus 109 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~--lllLD 186 (646)
|.+||+|++.++... ... ..+++.+|+.+..+..+ ++|| |||++||++++.+|+ +|+||
T Consensus 168 ~~~~v~e~l~~~~~~---~~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 168 AATVLSKAVKRGKEE---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHHHT---TCS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHc---CCc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 999999999886421 110 13456677776555554 4699 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCc--------HHHHhhcCeEEEEeCCeE
Q 039035 187 EPTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPS--------SRIQLLLDHLIILARGQL 240 (646)
Q Consensus 187 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 240 (646)
||+|||+... ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 229 -ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 -GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999998754 345554 5899999999432 234456678899988865
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=9.9e-25 Score=238.80 Aligned_cols=192 Identities=18% Similarity=0.148 Sum_probs=151.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe---
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK--- 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~--- 87 (646)
.++++|+++.|.. +..+|+++ +.+.+||+++|+|||||||||||++|+|..+++. |.|.++|+
T Consensus 131 ~l~~~~v~~~~~t-----------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~--G~i~~~G~r~~ 196 (438)
T 2dpy_A 131 PLQRTPIEHVLDT-----------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV--IVVGLIGERGR 196 (438)
T ss_dssp TTTSCCCCSBCCC-----------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE--EEEEEESCCHH
T ss_pred ceEEeccceecCC-----------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe--EEEEEeceecH
Confidence 5666677666542 24699999 9999999999999999999999999999999876 99999998
Q ss_pred eCCc--------ccccccEEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 039035 88 ETSP--------SLIKRTSAYIMQE-DRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEG 158 (646)
Q Consensus 88 ~~~~--------~~~~~~i~yv~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 158 (646)
++.. ..+++.++||+|+ +.+++.+||.+|+.+.++.... ..+++ ....| .
T Consensus 197 ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~------~~~~v---------~~~ld------~ 255 (438)
T 2dpy_A 197 EVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD------RGQHV---------LLIMD------S 255 (438)
T ss_dssp HHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT------TTCEE---------EEEEE------C
T ss_pred HHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh------CCCCH---------HHHHH------h
Confidence 4421 2356789999995 5567788999999886543100 00000 01111 1
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEecCCcHHHHhhc
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR---S-GS-----TVILTIHQPSSRIQLLL 229 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~~H~~~~~i~~~~ 229 (646)
...+|+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ + |. ||++++||.+ ..++
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 34699999 999999 888888 999999999999999999876 3 64 9999999987 3679
Q ss_pred CeEEEEeCCeEEEEcChhhHH
Q 039035 230 DHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 230 D~v~~L~~G~iv~~g~~~~~~ 250 (646)
|++++|.+|+++..|+++++.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999887764
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=8.4e-24 Score=217.49 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=98.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCH
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISW 130 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 130 (646)
.++|+||||||||||+|+|+|+..|++ |+|.++|+++.....++.++|++|++.+++.+||.||+.|+..... ...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~--G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK--ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC--CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHHH
Confidence 479999999999999999999999877 9999999987655556789999999999999999999988754321 1111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 039035 131 SDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210 (646)
Q Consensus 131 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 210 (646)
+.+.+.++ .+..+.. +.+||||||||+++||+++. +++|||||.|||+.. .+.++.+.+.
T Consensus 81 ----~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 81 ----EPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp ----HHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred ----HHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 22333332 1222333 24799999999999999875 999999999999987 5566667666
Q ss_pred CCEEEEEecCC
Q 039035 211 GSTVILTIHQP 221 (646)
Q Consensus 211 g~tii~~~H~~ 221 (646)
++||+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8999999974
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=2.8e-21 Score=205.99 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=77.6
Q ss_pred CCCCC-CCChHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHH
Q 039035 156 DEGTR-GVSGGERRRVSIGVDII---------HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRI 225 (646)
Q Consensus 156 ~~~~~-~LSgGerqRv~ia~~L~---------~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i 225 (646)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998874 799999994 32
Q ss_pred HhhcCeEEEEeCCeEEEEcChhhH
Q 039035 226 QLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 226 ~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=6.4e-23 Score=218.30 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=136.1
Q ss_pred cceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------cc--cccEEEEccCCC-CCC
Q 039035 40 NKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------LI--KRTSAYIMQEDR-LFP 109 (646)
Q Consensus 40 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~-l~~ 109 (646)
+++|+++++|++++|+||||||||||++.|+|++++.. |+|.++|.++... .+ +..++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~--G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG--TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC--CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46889999999999999999999999999999998866 9999999886421 12 356999999988 899
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCC--EEEEeC
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP--LLFLDE 187 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~--lllLDE 187 (646)
.+||+|++.++... ... ..+++.+|+.+..+..+ .+|| |||++||++++.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~---~~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEE---GYD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHHHT---TCS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhhHHHHHHHHHhC---CCH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 99999999886421 110 12456677776555544 4699 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCc--------HHHHhhcCeEEEEeCCeE
Q 039035 188 PTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPS--------SRIQLLLDHLIILARGQL 240 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~--------~~i~~~~D~v~~L~~G~i 240 (646)
||+|||+.... +++.+ .|.|+|++||... +......+.|.++..|+.
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987653 44554 5899999999421 234456678888888864
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=1.3e-22 Score=214.64 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=108.8
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC-cccccccEEEEccCCCCCCCCCHHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS-PSLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~-~~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
+++++|+.+++|++++|+||||||||||+++|+|+++|++ |.|.++|.+.. ....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~--g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE--RIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS--CEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC--cEEEECCeeccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999999876 99999986421 111233444432
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTS 196 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~ 196 (646)
+ |||+||++||++|..+|++|+|||||+
T Consensus 224 --------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~------ 251 (330)
T 2pt7_A 224 --------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS------ 251 (330)
T ss_dssp --------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS------
T ss_pred --------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh------
Confidence 0 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeE
Q 039035 197 AYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQL 240 (646)
Q Consensus 197 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~i 240 (646)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+.
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456777777654568999999976 5678999999988753
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.84 E-value=3.2e-22 Score=208.22 Aligned_cols=186 Identities=20% Similarity=0.187 Sum_probs=125.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee-EEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG-KVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
+..+|+++++.+++|++++|+||||||||||++.|+|...+.+ | .|.+.+.+.....+++++.++.|+.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 4568999999999999999999999999999999999987764 7 67654444433333333334444322 123
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHHhCCCEEEEeCCCC--
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE-RRRVSIGVDIIHGPPLLFLDEPTS-- 190 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~~~P~lllLDEPts-- 190 (646)
.+++.... + +.++.++.++++++..++. +. ..+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~-----~~~~~~~~~~~~l~~~~l~------i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-I-----ENGKFDQWFDELFGNDTFH------LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-H-----HHTHHHHHHHHHHSSSCEE------EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-C-----CHHHHHHHHHHHhccCCEE------EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 34443321 1 1223334455554432321 11 1124589998 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCEEEEEecCCc-H--------------------HHHhhcCeEEEEeCCeE
Q 039035 191 -G---LDS-TSAYSVIEKVHNIARS-GSTVILTIHQPS-S--------------------RIQLLLDHLIILARGQL 240 (646)
Q Consensus 191 -g---LD~-~~~~~i~~~l~~l~~~-g~tii~~~H~~~-~--------------------~i~~~~D~v~~L~~G~i 240 (646)
+ +|. ....++++.|++++++ |+|||+++|+.. . .+.++||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 999999999951 2 57789999999998874
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.83 E-value=3.3e-25 Score=220.93 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=111.1
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc----ccccccEEEEccCCCCCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP----SLIKRTSAYIMQEDRLFPML 111 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~----~~~~~~i~yv~Q~~~l~~~l 111 (646)
..-|+||||++++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ...++.++|++|++.+++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999988 4 78888 765422 12356789999987665543
Q ss_pred CH-HHHHH---HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH-----HHHHHhCCCE
Q 039035 112 TV-FETLM---FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSI-----GVDIIHGPPL 182 (646)
Q Consensus 112 Tv-~e~l~---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----a~~L~~~P~l 182 (646)
+. .+++. +....+ +.+ .+.++++++...+. .+. ..+|||||||++| +++++.+|++
T Consensus 84 ~~~~~~l~~~~~~~~~~--g~~----~~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 84 LKNEDFLEYDNYANNFY--GTL----KSEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHTTCEEEEEEETTEEE--EEE----HHHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hhccchhhhhhcccccC--CCc----HHHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 21 11111 101110 111 23466667654321 111 3699999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHH-------cCCEEEEEecCCcHHHHhhcCeE
Q 039035 183 LFLDEPTSGLDSTSAYSVIEKVHNIAR-------SGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 183 llLDEPtsgLD~~~~~~i~~~l~~l~~-------~g~tii~~~H~~~~~i~~~~D~v 232 (646)
++|||||+++|..+...+.+.+.++.+ .+.+.|+++|++. ++.+.+|++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 999999999999999999988887654 2344555555532 334444443
No 82
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.83 E-value=4.5e-20 Score=215.01 Aligned_cols=111 Identities=23% Similarity=0.480 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 039035 132 DKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHGP--PLLFLDEPTSGLDSTSAYSVIEKVHNIA 208 (646)
Q Consensus 132 ~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P--~lllLDEPtsgLD~~~~~~i~~~l~~l~ 208 (646)
+..++++ .++.+||.+. .++. +.+|||||||||.||++|..+| .+|+|||||+|||+.....+.++|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~-----~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRS-----TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCB-----GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCC-----cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445565 6788999754 4544 4579999999999999999999 5999999999999999999999999999
Q ss_pred HcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 209 RSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 209 ~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
+.|.|||+++|++. +.+.+|+|++| ++|++++.|+++++.
T Consensus 429 ~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 88999999999974 45689999999 789999999998864
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=8.7e-20 Score=193.79 Aligned_cols=78 Identities=29% Similarity=0.392 Sum_probs=70.2
Q ss_pred CCCCCCChHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC
Q 039035 157 EGTRGVSGGERR------RVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 157 ~~~~~LSgGerq------Rv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 230 (646)
..++.||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++.+.||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 346789999999 66777888889999999999999999999999999999988899999999995 3678999
Q ss_pred eEEEEe
Q 039035 231 HLIILA 236 (646)
Q Consensus 231 ~v~~L~ 236 (646)
+++.|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.5e-20 Score=210.67 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=71.4
Q ss_pred CCCCC-ChHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 158 GTRGV-SGGERRRVSIGVDIIHGP--PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 158 ~~~~L-SgGerqRv~ia~~L~~~P--~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |+|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35677 999999999999999999 99999999999999999999999999987 899999999975 4457999999
Q ss_pred EeCC
Q 039035 235 LARG 238 (646)
Q Consensus 235 L~~G 238 (646)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=4.6e-22 Score=201.54 Aligned_cols=171 Identities=9% Similarity=0.075 Sum_probs=107.1
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
+++.+|+|+||++++|+++||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 3567999999999999999999999999999999999975 333333 2467799999985 7788999
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLD 193 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD 193 (646)
.|++.+.........+.....+.+.+.++.+ .+..+.. +..+|+||+||+.+ ++++.+|+++++|||....|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9998775432110011111123445555543 2333333 35799999999988 57888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 194 STSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 194 ~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.. +.++ .+.+|++++|+.......+++++ ++|+
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 63 2222 37899999997433223444444 5564
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=1.8e-23 Score=219.29 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=99.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRL 125 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~ 125 (646)
+++|+++||+||||||||||+++|+|++++.. |. +.++||+|++.+++. |++||+.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~--G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD--HH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST--TC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC---
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC--CC--------------CeEEEEecCccCCcc-cHHHHHHHHHh---
Confidence 89999999999999999999999999998753 42 458999999999988 99999864211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 126 GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 126 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
.+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222333466788888887 44444443 47999999999999999999999999999999986
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=1.2e-20 Score=221.61 Aligned_cols=163 Identities=25% Similarity=0.371 Sum_probs=125.9
Q ss_pred HHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCC--C-HH---HHHHHH
Q 039035 64 TLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPI--S-WS---DKKQRV 137 (646)
Q Consensus 64 TLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~--~-~~---~~~~~v 137 (646)
|...|..+++.+.. |+|.++|+++.. +..+||.|++.|...+.+... . .. +..++.
T Consensus 383 ~C~~C~g~rl~~~~--~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNREA--LSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCTTG--GGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCChHh--cCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 34456667777766 999999987632 233678888877554332210 0 00 112334
Q ss_pred HHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 039035 138 ENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP--LLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTV 214 (646)
Q Consensus 138 ~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~--lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~ti 214 (646)
.+.+..+||... .++. +.+|||||||||.||++|+.+|+ +|||||||+|||+.....++++|++++++|.||
T Consensus 445 ~~~L~~vgL~~l~l~r~-----~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRS-----ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSB-----GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCC-----cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 567888999753 3444 45799999999999999999887 999999999999999999999999999889999
Q ss_pred EEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHHH
Q 039035 215 ILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVTL 251 (646)
Q Consensus 215 i~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 251 (646)
|+++||+. .+ ..+|+|++| ++|++++.|+++++..
T Consensus 520 ivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99999964 45 469999999 8999999999998754
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=8.9e-23 Score=229.27 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=120.5
Q ss_pred ccccccceeE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCcceeEEEECCeeCCc--ccccccEEEEccCCCCCC
Q 039035 35 EVDLLNKITG-DAPKGCITAVMGPSGAGKSTLLDG--LAGRIASGSLKGKVTLDGKETSP--SLIKRTSAYIMQEDRLFP 109 (646)
Q Consensus 35 ~~~iL~~vs~-~i~~Ge~~aI~GpsGaGKSTLL~~--L~G~~~~~~~~G~I~~~g~~~~~--~~~~~~i~yv~Q~~~l~~ 109 (646)
...+|++||+ .+++||+++|+||||||||||+++ ++|+.+|++ |.|+++|++... ...++.+||++|+....+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~--g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE--PGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC--CEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC--CEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 789988776 999999987432 123466899999754221
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPT 189 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPt 189 (646)
+ +.+ ..... . ++..++++.++|.+..+.. ++.|||| +|++++|||||
T Consensus 102 ~------l~~---~~~~~-~-----~~~~~~l~~~~l~~~~~~~-----~~~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 102 K------LFI---LDASP-D-----PEGQEVVGGFDLSALIERI-----NYAIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp S------EEE---EECCC-C-----SSCCSCCSSHHHHHHHHHH-----HHHHHHH-------------TCSEEEEECST
T ss_pred c------EEE---EecCc-c-----cchhhhhcccCHHHHHHHH-----HHHHHHc-------------CCCEEEECCHH
Confidence 1 100 00000 0 0001112222222222211 1235554 58899999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHH--------HHhhcCeEEEEeCCe
Q 039035 190 S-----GLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSR--------IQLLLDHLIILARGQ 239 (646)
Q Consensus 190 s-----gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~--------i~~~~D~v~~L~~G~ 239 (646)
+ +||+..+..+.++++++++.|+|||+++|++... ...+||++++|++|+
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 8 5699999999999999988899999999998652 345699999999844
No 89
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.80 E-value=2.2e-21 Score=206.12 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=138.2
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
.++.+|+++.|.. +..+|+++ +.+.+||+++|+||||||||||+++|+|..+++. |.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~t-----------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~--g~i~~~G~~~~ 110 (347)
T 2obl_A 45 PLLRQVIDQPFIL-----------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI--IVLALIGERGR 110 (347)
T ss_dssp STTCCCCCSEECC-----------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE--EEEEEESCCHH
T ss_pred CeeecccceecCC-----------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE--EEEEEecccHH
Confidence 4555666655542 34699999 9999999999999999999999999999999876 99999986521
Q ss_pred ----------cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCC
Q 039035 91 ----------PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTR 160 (646)
Q Consensus 91 ----------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 160 (646)
...+++.+.++.|.+. +..+.+.-... ...+.+.....+ .+..+--+.+.
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~-----------~~~~ae~~~~~~----~~vl~~ld~~~ 170 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT-----------ATTIAEYFRDQG----KNVLLMMDSVT 170 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH-----------HHHHHHHHHTTT----CEEEEEEETHH
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH-----------HHHHHHHHHhcc----ccHHHHHhhHH
Confidence 1123456788887542 23332221100 000111111111 11000002345
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEecCCcHHHHhhcCeEE
Q 039035 161 GVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR--SGS-----TVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 161 ~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~~H~~~~~i~~~~D~v~ 233 (646)
.+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||.+ ..+||++.
T Consensus 171 ~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~ 237 (347)
T 2obl_A 171 RYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVR 237 (347)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHH
T ss_pred HHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheE
Confidence 799999 899999 678877 999999999999999999974 477 9999999987 35799999
Q ss_pred EEeCCeEEEEcChhhHH
Q 039035 234 ILARGQLMFQGPPKEVT 250 (646)
Q Consensus 234 ~L~~G~iv~~g~~~~~~ 250 (646)
++.+|+++.++++++..
T Consensus 238 ~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 238 SILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHCSEEEEBCHHHHTTT
T ss_pred EeeCcEEEEeCCHHHcC
Confidence 99999999999887763
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=1.1e-20 Score=225.24 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=120.8
Q ss_pred eEEEEe-----EEEEEeccccccccccccccccccceeEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCcc
Q 039035 11 GLGFSN-----LTYTVTKKKKIEGTWLKEEVDLLNKITGDAPK-------GCITAVMGPSGAGKSTLLDGLAGRIASGSL 78 (646)
Q Consensus 11 ~l~~~~-----ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~ 78 (646)
.|+++| |++.+.+ +..+++|+++.+++ |++++|+||||||||||||+| |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~~-----------~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFG-----------DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--- 814 (1022)
T ss_dssp CEEEEEECCCC------C-----------CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---
T ss_pred eEEEEeccccEEEEEecC-----------CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---
Confidence 699999 8887732 24699999999987 999999999999999999999 88742
Q ss_pred eeEEEECCeeCCcccccccEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 039035 79 KGKVTLDGKETSPSLIKRTSA-YIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDE 157 (646)
Q Consensus 79 ~G~I~~~g~~~~~~~~~~~i~-yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 157 (646)
..++| ||||+.. .+||.|++.. + +|+.+....
T Consensus 815 ----------------~aqiG~~Vpq~~~---~l~v~d~I~~----r-------------------ig~~d~~~~----- 847 (1022)
T 2o8b_B 815 ----------------MAQMGCYVPAEVC---RLTPIDRVFT----R-------------------LGASDRIMS----- 847 (1022)
T ss_dssp ----------------HHTTTCCEESSEE---EECCCSBEEE----E-------------------CC------------
T ss_pred ----------------HhheeEEeccCcC---CCCHHHHHHH----H-------------------cCCHHHHhh-----
Confidence 12344 9999763 4555554410 1 122211111
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 158 GTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSA-YSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 158 ~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
....+|+++++ +++|++++++|+++||||||+|+|+... ..++.+|+.++++ |.++|++||++. .+..++|++.++
T Consensus 848 ~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~ 925 (1022)
T 2o8b_B 848 GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR 925 (1022)
T ss_dssp --CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE
T ss_pred chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee
Confidence 12357777664 9999999999999999999999999985 5578899999876 999999999964 567789998886
Q ss_pred eCCeEE--EEcChhh
Q 039035 236 ARGQLM--FQGPPKE 248 (646)
Q Consensus 236 ~~G~iv--~~g~~~~ 248 (646)
+|++. +.|++++
T Consensus 926 -~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 926 -LGHMACMVENECED 939 (1022)
T ss_dssp -EEEEEEC-------
T ss_pred -cCeEEEEEecCccc
Confidence 58887 5565543
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=8.1e-20 Score=205.16 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=119.6
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 039035 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD 122 (646)
Q Consensus 43 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 122 (646)
++.+++|++++|+||||||||||+++++|...+. |+ +.+.|++|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~---~- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNA---Y- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHH---H-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHH---H-
Confidence 5689999999999999999999999999987653 32 12456666541 1222222 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HH
Q 039035 123 FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST-----SA 197 (646)
Q Consensus 123 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~-----~~ 197 (646)
+. +.+. ++ +...|+.+..+ ..+..|||||+||+.+|+++..+|++|++| ||+|||.. .+
T Consensus 330 -~~-g~~~-------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 -SW-GMDF-------EE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp -TT-SCCH-------HH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred -Hc-CCCH-------HH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 11 1221 12 22455544443 335689999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHcCCEEEEEecCCc---------HHHHhhcCeEEEEeCCe
Q 039035 198 YSVIEKVHNIARSGSTVILTIHQPS---------SRIQLLLDHLIILARGQ 239 (646)
Q Consensus 198 ~~i~~~l~~l~~~g~tii~~~H~~~---------~~i~~~~D~v~~L~~G~ 239 (646)
..+.++++.+++.|+|||+++|+.. ..+..++|++++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999988999999999971 34677999999999887
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=7.4e-21 Score=191.79 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=109.8
Q ss_pred ccccee-EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCcceeEEEECCeeCCcc--cccccEEEEccCCCCCCCCC
Q 039035 38 LLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLA--GRIASGSLKGKVTLDGKETSPS--LIKRTSAYIMQEDRLFPMLT 112 (646)
Q Consensus 38 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~--G~~~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~~l~~~lT 112 (646)
.|+++- +.+++|++++|+||||||||||+++|+ |...++. |.+.+++.+.... ...+.++|++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC--eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 455442 489999999999999999999999999 6634444 7777777543211 12345677777654455555
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 039035 113 VFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGL 192 (646)
Q Consensus 113 v~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgL 192 (646)
+.++....... . ....... ....+.++..+......-..+|+++++||||++|
T Consensus 96 ~~~~~~~~~~~-----~----~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~l 148 (251)
T 2ehv_A 96 IVDGVSSVVGL-----P----SEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIA 148 (251)
T ss_dssp EEC----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHH
T ss_pred EEEcccccccc-----c----cccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHH
Confidence 54433221100 0 0000000 0113344444444444446899999999999999
Q ss_pred C-----HHHHHHHHHHHHHHHHcCCEEEEEecCCcHHH---------Hhhc-CeEEEEeC
Q 039035 193 D-----STSAYSVIEKVHNIARSGSTVILTIHQPSSRI---------QLLL-DHLIILAR 237 (646)
Q Consensus 193 D-----~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i---------~~~~-D~v~~L~~ 237 (646)
| +..+..+.++++.++++|+|||+++|+... + ..+| |++++|++
T Consensus 149 d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 149 LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEee
Confidence 8 677777999999998889999999999764 4 5788 99999963
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=2.9e-19 Score=210.75 Aligned_cols=152 Identities=15% Similarity=0.200 Sum_probs=112.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHH--------HcCCCCCcceeEEEECCeeCCcccccccEEEEccCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGL--------AGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDR 106 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L--------~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~ 106 (646)
++.+++|+++.+++|++++|+||||||||||||++ .|...|.. +.. ++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~--~~~---------------~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE--SAE---------------VSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE--EEE---------------EECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc--ccc---------------chHH---HH
Confidence 45799999999999999999999999999999999 44333321 110 1110 00
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--HhCCCEEE
Q 039035 107 LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI--IHGPPLLF 184 (646)
Q Consensus 107 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~P~lll 184 (646)
++..+|+.+. ..+++|+|+++++.+|+++ +++|+++|
T Consensus 708 ---------------------------------i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 708 ---------------------------------ILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------------------HHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 0111122111 1235888888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhH
Q 039035 185 LDEPTSGLDSTSAYSV-IEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEV 249 (646)
Q Consensus 185 LDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 249 (646)
|||||+|||+.....+ ..+++.+++ .|.++|++||+. ++.+++|++..+.+|++...++.+++
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999999888 677788876 499999999995 35689999999999999998887765
No 94
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.2e-18 Score=203.37 Aligned_cols=134 Identities=26% Similarity=0.433 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHccCCCC----C---HHHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHHHhCC
Q 039035 109 PMLTVFETLMFAADFRLGPI----S---WSDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDIIHGP 180 (646)
Q Consensus 109 ~~lTv~e~l~~~~~~~~~~~----~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P 180 (646)
..+||.|++.|...+.++.. . .++..+++ +.|+.+||... .++.+ .+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 45899999999776643210 0 02345555 45899999753 45554 579999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhhHH
Q 039035 181 --PLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKEVT 250 (646)
Q Consensus 181 --~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 250 (646)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ +.||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999964 45 579999999 789999999998864
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=1.1e-19 Score=185.80 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=100.1
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
.+|+++| +++|++++|+||||||||||+++|+|.++|. + |+|.++|.++... .+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~--G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKS--YHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCC--CEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCC--CEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998775 5 9999998765311 11112222221
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST 195 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~ 195 (646)
.+|++. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 196 SAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 196 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
+...+++ . ++.|.+|++++|+.+ ..+.+|+++.|..
T Consensus 112 ~~~~~l~---~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETALR---A-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---H-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHH---H-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 8665443 3 456999999999975 4678999888754
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=2e-18 Score=202.21 Aligned_cols=133 Identities=23% Similarity=0.388 Sum_probs=109.9
Q ss_pred CCCCCHHHHHHHHHHccCCCCCH----------HHHHHHHHHHHHHcCCCcc-ccccccCCCCCCCChHHHHHHHHHHHH
Q 039035 108 FPMLTVFETLMFAADFRLGPISW----------SDKKQRVENLVDQLGLTTT-RNTHIGDEGTRGVSGGERRRVSIGVDI 176 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L 176 (646)
+..+||.|.+.|...+. ++. ++..+++ +.++.+||... .++. +.+|||||||||.||++|
T Consensus 466 ~~~ltV~e~l~f~enl~---l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~-----~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 466 VCELSIADCADFLNALT---LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRA-----AATLSGGEAQRIRLATQI 536 (993)
T ss_dssp SSHHHHHHHHHTTTTTT---SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCB-----GGGCCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcC---CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCC-----cccCCHHHHHHHHHHHHH
Confidence 45689999999854443 233 3344555 35788999753 4544 457999999999999999
Q ss_pred HhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE------eCCeEEEEcChhh
Q 039035 177 IHG--PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL------ARGQLMFQGPPKE 248 (646)
Q Consensus 177 ~~~--P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~ 248 (646)
..+ |++|+|||||+|||+.....+.+.|++|++.|.|||+++|++. .+ +.+|+|++| ++|++++.|++++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-TI-EHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-HH-HhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 999 5899999999999999999999999999989999999999964 44 579999999 7899999999988
Q ss_pred HHH
Q 039035 249 VTL 251 (646)
Q Consensus 249 ~~~ 251 (646)
+..
T Consensus 615 ~~~ 617 (993)
T 2ygr_A 615 LLR 617 (993)
T ss_dssp HHH
T ss_pred hhh
Confidence 754
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=1e-19 Score=181.06 Aligned_cols=159 Identities=23% Similarity=0.243 Sum_probs=101.4
Q ss_pred ccccee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCc-----ceeEEEECCeeCCcccccccEEEEccCCCCCCCC
Q 039035 38 LLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGS-----LKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPML 111 (646)
Q Consensus 38 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~-----~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l 111 (646)
.|+.+- +-+++||+++|+||||||||||+++|+|...+.. ..|.|++++.+.. ..+.+++++|+..+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-
Confidence 444433 5899999999999999999999999999654421 1246777665321 01234455555444333
Q ss_pred CHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHHh-------CCCEE
Q 039035 112 TVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE-RRRVSIGVDIIH-------GPPLL 183 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~~-------~P~ll 183 (646)
|+.||+.+. ...++++ ++.+..+.+++. +|+++
T Consensus 89 ~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 89 EVLKHIYVA---------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp HHHHTEEEE---------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred HHhhcEEEE---------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 444443221 1122232 233444555554 89999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHH-cCCEEEEEecCCc---HHHHhhcCeEEEEeCCe
Q 039035 184 FLDEPTSGLDST-------S-----AYSVIEKVHNIAR-SGSTVILTIHQPS---SRIQLLLDHLIILARGQ 239 (646)
Q Consensus 184 lLDEPtsgLD~~-------~-----~~~i~~~l~~l~~-~g~tii~~~H~~~---~~i~~~~D~v~~L~~G~ 239 (646)
++||||+++|+. . ..++++.|+++++ .|+|||+++|... ..+...+|+++.|++|+
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999999999984 1 2378888888875 4999999999533 13678899999998754
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.3e-18 Score=160.81 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=73.6
Q ss_pred CCCCCCCChHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 156 DEGTRGVSGGERRRVSIG------VDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 156 ~~~~~~LSgGerqRv~ia------~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
+..+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.++|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999886 899999999999999999999999999999999987799999999997 356899
Q ss_pred CeEEEEe--CCe
Q 039035 230 DHLIILA--RGQ 239 (646)
Q Consensus 230 D~v~~L~--~G~ 239 (646)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 564
No 99
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=2.6e-20 Score=194.55 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=87.0
Q ss_pred EeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCcceeEEEECCeeCCccc
Q 039035 15 SNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR-IASGSLKGKVTLDGKETSPSL 93 (646)
Q Consensus 15 ~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~-~~~~~~~G~I~~~g~~~~~~~ 93 (646)
+||+++|.+ +.++++++++| +|+||||+|||||+++|+|. ..+.+ | |.++|.++....
T Consensus 2 ~~l~~~~~~------------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~--g-i~~~g~~~~~t~ 60 (301)
T 2qnr_A 2 SNLPNQVHR------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER--V-ISGAAEKIERTV 60 (301)
T ss_dssp ----------------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------
T ss_pred CCCcceECC------------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC--C-cccCCcccCCcc
Confidence 467777643 46999999998 99999999999999999997 66665 8 888887764322
Q ss_pred ccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH
Q 039035 94 IKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIG 173 (646)
Q Consensus 94 ~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 173 (646)
-.+.+++++|++.....+||.|+..++..... .+..+..++.+.+. .+.+ .+++|||||||+.+|
T Consensus 61 ~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~----~e~~~~l~~~l~~~------~~~~-----~~~~sgg~rqrv~~a 125 (301)
T 2qnr_A 61 QIEASTVEIEERGVKLRLTVVDTPGYGDAINC----RDCFKTIISYIDEQ------FERY-----LHDESGLNRRHIIDN 125 (301)
T ss_dssp ----CEEEEC---CCEEEEEEEEC---------------CTTHHHHHHHH------HHHH-----HHHHTSSCCTTCCCC
T ss_pred eEeeEEEEecCCCcccCcchhhhhhhhhhcCc----HHHHHHHHHHHHHH------HHHH-----HHHhCHHhhhhhhhh
Confidence 23568999999888888999999877543210 00001112222111 2223 357999999999888
Q ss_pred HHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCc
Q 039035 174 VDIIHGPPLLFLDEPTS-GLDSTSAYSVIEKVHNIARS-GSTVILTIHQPS 222 (646)
Q Consensus 174 ~~L~~~P~lllLDEPts-gLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~ 222 (646)
++++ ++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 126 ra~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 126 RVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 8875 999999998 5999873 566666653 789999999964
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=7.1e-19 Score=203.95 Aligned_cols=146 Identities=20% Similarity=0.175 Sum_probs=106.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-SGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
++.+++|+|++ |++++|+||||||||||||+|+|+.. +.. |.+. . ..+..+++++| +++.+++
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~--G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV--GSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT--TCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc--Ccee------e--hhccceeeHHH---hhccCCH
Confidence 35799999999 99999999999999999999999863 333 5432 1 12345777776 4555666
Q ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH--HhCCCEEEEeCC---
Q 039035 114 FETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI--IHGPPLLFLDEP--- 188 (646)
Q Consensus 114 ~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~P~lllLDEP--- 188 (646)
.|++. .++|+|+++++.+++++ +++|+++|||||
T Consensus 629 ~d~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 629 SDDLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 55432 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 189 TSGLDSTSA-YSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 189 tsgLD~~~~-~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
|++||..+. ..+++.|++ .|.|+|++||+.. ..+++ .--+.++++....
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEEE
Confidence 999998875 568887766 5899999999953 44555 2223444544443
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=5.9e-18 Score=199.05 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=105.1
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++.+++|||+++++|++++|+||||||||||||++++...... .|. .+... ...++.+ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-~g~------~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-IGS------YVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-HTC------CBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-cCc------cccch--hhhhhHH---HHHHHhCChH
Confidence 4679999999999999999999999999999999986532110 010 01000 0111211 1122222221
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
+++ .. ....+|+||+|++.|+++ +++|+++||||||+|||+
T Consensus 727 d~l---------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 727 DNI---------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HHH---------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 111 11 124689999999999998 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEE-EeCCeEEE
Q 039035 195 TSAYSVI-EKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLII-LARGQLMF 242 (646)
Q Consensus 195 ~~~~~i~-~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 242 (646)
.....+. .+++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999998 77888875 5999999999964 4567776431 34444443
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.72 E-value=1.9e-17 Score=181.39 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEE
Q 039035 160 RGVSGGERRRVSIGVDII----HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIIL 235 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~----~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L 235 (646)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999876689999999994 356789999998
Q ss_pred eC
Q 039035 236 AR 237 (646)
Q Consensus 236 ~~ 237 (646)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=1.2e-20 Score=185.97 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=114.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCC--CCCCHHHHHHHHHHc
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLF--PMLTVFETLMFAADF 123 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~--~~lTv~e~l~~~~~~ 123 (646)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999997642 488999998776 5689998865421
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------C
Q 039035 124 RLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER----RRVSIGVDIIHGPPLLFLDEPTSG-------L 192 (646)
Q Consensus 124 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer----qRv~ia~~L~~~P~lllLDEPtsg-------L 192 (646)
. .+.....+++.+.++.+++.+..+.+ +..+|+||+ ||++++++++.+|.++++||||++ |
T Consensus 60 ~---~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 60 D---HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp T---SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred C---ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 1 11111235677788888887655443 346899964 788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHcCCEEEEEecCCc
Q 039035 193 DSTSAYSVIEKVHNI-ARSGSTVILTIHQPS 222 (646)
Q Consensus 193 D~~~~~~i~~~l~~l-~~~g~tii~~~H~~~ 222 (646)
|+....++.+.+++. .++|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999876 456999999999743
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=7.3e-20 Score=208.55 Aligned_cols=192 Identities=18% Similarity=0.212 Sum_probs=120.1
Q ss_pred eEEEEeEEEEEeccccccccccccccccccce----------eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-Ccce
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKI----------TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIAS-GSLK 79 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~-~~~~ 79 (646)
.++++||++.|+.+. +.+|+.+ ++.++. ++|+|||||||||||++|+|+..| ++
T Consensus 10 ~i~~~~l~~~~~~~~----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~s-- 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKV----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGS-- 74 (608)
T ss_dssp ----------CHHHH----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------
T ss_pred hhhhhhhhHHHHHHH----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCC--
Confidence 688999999886431 1233322 355544 999999999999999999999877 56
Q ss_pred eEEEECCeeCC------cccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 039035 80 GKVTLDGKETS------PSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTH 153 (646)
Q Consensus 80 G~I~~~g~~~~------~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 153 (646)
|.|.++|.++. ...+++.+||++|+..+++.+||+|++.+........ .-++..
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~---------------~~~~s~----- 134 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE---------------GMGISH----- 134 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS---------------SSCCCS-----
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC---------------ccccch-----
Confidence 99999998852 1346788999999999999999999998764321000 001110
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHH--cCCEEEEEecCCcH--
Q 039035 154 IGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP------TSGLDSTSAYSVIEKVHNIAR--SGSTVILTIHQPSS-- 223 (646)
Q Consensus 154 vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~~~~-- 223 (646)
+++.++.+...+|+++++||| |+|||+..+..+.++++++.+ .+.++++++|+...
T Consensus 135 --------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 135 --------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp --------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred --------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 111122222358999999999 999999999999999999754 37889999998651
Q ss_pred ----HHHhh-----cCeEEEEeCCeEEEEcChhhHHH
Q 039035 224 ----RIQLL-----LDHLIILARGQLMFQGPPKEVTL 251 (646)
Q Consensus 224 ----~i~~~-----~D~v~~L~~G~iv~~g~~~~~~~ 251 (646)
.+.+. ...|.++.++.++..|+.+++..
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 12222 24578899998888887655543
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=3.7e-19 Score=185.80 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------cc--cccEEEEccCCCCCCCCCHHHHHH
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------LI--KRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~--~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
+|++++|+||||||||||+++|+|+++|+. |+|.++|.++... .+ ++.++||+|+..+.|.+||+|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~--g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG--KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT--CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999999999999876 9999999886421 11 346899999999999999999998
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAY 198 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~ 198 (646)
++..-. .. ..+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+..
T Consensus 179 ~~~~~~---~d--------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~ 234 (304)
T 1rj9_A 179 AMKARG---YD--------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQ 234 (304)
T ss_dssp HHHHHT---CS--------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCT
T ss_pred HHHhCC---CC--------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHH
Confidence 653210 00 01222233332221 12455668999999999999994444 45555555
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCC
Q 039035 199 SVIEKVHNIARS-GSTVILTIHQP 221 (646)
Q Consensus 199 ~i~~~l~~l~~~-g~tii~~~H~~ 221 (646)
++++.++++.+. |.|+|++||+.
T Consensus 235 ~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 235 NGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHcCCcEEEEECCc
Confidence 677777777654 99999999985
No 106
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=2.5e-18 Score=200.51 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=111.3
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++.+++|+|++ ++|++++|+||||||||||||+|+|...... .| ..+... +..++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~G------~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IG------SYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TT------CCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-cC------cccchh--cccceeHHH---HHhhCCHH
Confidence 45799999999 9999999999999999999999999743211 12 111111 234566655 45555666
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
|++... + +.+|+|+++ ++.+...+++|+++|||||++|+|+
T Consensus 661 d~l~~~-------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 661 DDLASG-------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHHhh-------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 554221 1 135666654 5555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcCh
Q 039035 195 TSAYSV-IEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPP 246 (646)
Q Consensus 195 ~~~~~i-~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 246 (646)
.....+ ..+++.+++ .|.++|++||++. +.+++|++..+.+|++.+....
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcC
Confidence 888776 788888887 4999999999974 4568999888888888766543
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=4.4e-18 Score=169.15 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=112.6
Q ss_pred ccccccceeE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccc---cEEEEccCCCCCCC
Q 039035 35 EVDLLNKITG-DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKR---TSAYIMQEDRLFPM 110 (646)
Q Consensus 35 ~~~iL~~vs~-~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~---~i~yv~Q~~~l~~~ 110 (646)
+...|+++.+ .+++|++++|+||||||||||++.|++...+.. |.|.+.+.+.....+.+ .+++.+|+.... .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 3567889885 899999999999999999999999998775533 66666544332211111 112222211000 0
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCC--EEEEeCC
Q 039035 111 LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP--LLFLDEP 188 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~--lllLDEP 188 (646)
+++ .... ...++ ...+ ....|.+|.++...+.....+|+ ++++|||
T Consensus 85 ~~~-----------~~~~------------~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 85 LII-----------IDAL------------MKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EEE-----------EECC------------C---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EEE-----------Eecc------------ccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 000 0000 00000 0011 12359999988888888788999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCCc-------HHHHhhcCeEEEEeCC
Q 039035 189 TSGL--DSTSAYSVIEKVHNIAR-SGSTVILTIHQPS-------SRIQLLLDHLIILARG 238 (646)
Q Consensus 189 tsgL--D~~~~~~i~~~l~~l~~-~g~tii~~~H~~~-------~~i~~~~D~v~~L~~G 238 (646)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.++||++++|++.
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9887 99999999999999975 5999999999972 3478899999999864
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=1.2e-18 Score=185.72 Aligned_cols=166 Identities=23% Similarity=0.262 Sum_probs=105.5
Q ss_pred ccccce-eEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCCc--ceeE-EEECCeeCCcccccccEEEEccCCCCCCC
Q 039035 37 DLLNKI-TGDAPKGCITAVMGPSGAGKSTLLDGLAGRI--ASGS--LKGK-VTLDGKETSPSLIKRTSAYIMQEDRLFPM 110 (646)
Q Consensus 37 ~iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~--~~~~--~~G~-I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~ 110 (646)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+. ..|+ |++++++.. .++++++++|+..+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH
Confidence 456666 6899999999999999999999999999987 3322 1267 888886531 13456677776655443
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH-------hCCCEE
Q 039035 111 LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII-------HGPPLL 183 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-------~~P~ll 183 (646)
++.||+.+.. .. -|++++|++.++++++ .+|+++
T Consensus 195 -~v~~ni~~~~-----~~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 -EVLKHIYVAR-----AF---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp -HHGGGEEEEE-----CC---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred -HHhhCEEEEe-----cC---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 4444433210 00 1345555566666555 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcC
Q 039035 184 FLDEPTSGLDSTS------------AYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGP 245 (646)
Q Consensus 184 lLDEPtsgLD~~~------------~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 245 (646)
++||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 9999999999852 4567777777775 4899999999854 3433455556666677665544
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=1.9e-19 Score=175.16 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=105.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP 127 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 127 (646)
|++++|+||||||||||+++|+|+++ ++ | |.++|.+... ..+++.+||++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~--G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS--G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT--T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC--C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999987 65 9 9999987643 24578899999975 111 1111 01100
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHHH
Q 039035 128 ISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRV-SIGV---DIIHGPPLLFLDE--PTSGLDSTSAYSV 200 (646)
Q Consensus 128 ~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~ia~---~L~~~P~lllLDE--PtsgLD~~~~~~i 200 (646)
+..+ ..+..+|. +...+|+|||+++ ++++ |+..+|++||||| |+..+|....
T Consensus 67 -----------------~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~--- 125 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI--- 125 (189)
T ss_dssp -----------------CCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH---
T ss_pred -----------------cCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH---
Confidence 1111 01123332 2346999999988 4444 5789999999999 8989998654
Q ss_pred HHHHHHHHHcCCEEEE--E--ecCCcHHHHhhcCeEEEEeCCeEEEEc
Q 039035 201 IEKVHNIARSGSTVIL--T--IHQPSSRIQLLLDHLIILARGQLMFQG 244 (646)
Q Consensus 201 ~~~l~~l~~~g~tii~--~--~H~~~~~i~~~~D~v~~L~~G~iv~~g 244 (646)
+.|+++.++..++|+ + +|+.+ ..+.|+|..+.+|+++...
T Consensus 126 -~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 -QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred -HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444555445555554 2 28853 2466777777888887643
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=3.4e-17 Score=174.48 Aligned_cols=128 Identities=18% Similarity=0.236 Sum_probs=91.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR 124 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 124 (646)
...+|++++|+|||||||||||++|+|.+++.. .|.|...+.++.. ..+...++++|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~----------- 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGF----------- 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCH-----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHh-hhhccccceeeeeeccccCCH-----------
Confidence 678999999999999999999999999987642 2666554444321 123334555554322211111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 039035 125 LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKV 204 (646)
Q Consensus 125 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l 204 (646)
.+ +||++|..+|++|++|||| |..+ ++.+
T Consensus 186 ----------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 186 ----------------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ----------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ----------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 11 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCC
Q 039035 205 HNIARSGSTVILTIHQPSSRIQLLLDHLIILARG 238 (646)
Q Consensus 205 ~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G 238 (646)
.+++..|.||++|+|+.+. + +.+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 5557789999999999764 4 789999988554
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=2.3e-18 Score=168.87 Aligned_cols=176 Identities=14% Similarity=0.088 Sum_probs=98.8
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC-----CCCcceeEEEEC
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI-----ASGSLKGKVTLD 85 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~-----~~~~~~G~I~~~ 85 (646)
.|+++||++.|+. .++++ +.+++|+.++|+|+||||||||+|.|+|.. .++. |.+.+.
T Consensus 3 ~l~~~~~~~~~~~-------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~--G~~~~~ 65 (210)
T 1pui_A 3 NLNYQQTHFVMSA-------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP--GRTQLI 65 (210)
T ss_dssp --------CEEEE-------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCE
T ss_pred chhhhhhhheeec-------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCC--ccceee
Confidence 4789999999852 36777 889999999999999999999999999987 4443 665432
Q ss_pred CeeCCcccccccEEEEccCCCC----CCCCC---HHHHHHHHHHc-cC---------CCCCHHHHHHHHHHHHHHcCCCc
Q 039035 86 GKETSPSLIKRTSAYIMQEDRL----FPMLT---VFETLMFAADF-RL---------GPISWSDKKQRVENLVDQLGLTT 148 (646)
Q Consensus 86 g~~~~~~~~~~~i~yv~Q~~~l----~~~lT---v~e~l~~~~~~-~~---------~~~~~~~~~~~v~~~l~~lgL~~ 148 (646)
+.-. +...+-++ +.+.+ .+.-. .+..+...... +. .........+.+.++++..++..
T Consensus 66 ~~~~----~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 66 NLFE----VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV 140 (210)
T ss_dssp EEEE----EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE
T ss_pred EEEE----ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe
Confidence 2100 00001111 11110 00000 11112111110 00 00001122234566677777754
Q ss_pred cc-cccccCCCCCCCChHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 039035 149 TR-NTHIGDEGTRGVSGGERRR-VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGST 213 (646)
Q Consensus 149 ~~-~~~vg~~~~~~LSgGerqR-v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~t 213 (646)
.. .+++ ..+|+||||| +..+++++.+|.++++|||||++|.....++++.|.++.++|.|
T Consensus 141 ~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 31 3333 3699999999 89999999999999999999999999999999999998766544
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.66 E-value=1.7e-16 Score=163.65 Aligned_cols=157 Identities=21% Similarity=0.255 Sum_probs=108.4
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
|+.+-..+++|++++|+||||||||||++.+++.... |++. .|.+... ...+.|+..++.. ..+.+.+.
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~----g~~~-~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~ 88 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG----GPDL-LEVGELP---TGPVIYLPAEDPP---TAIHHRLH 88 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT----CCCT-TCCCCCC---CCCEEEEESSSCH---HHHHHHHH
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc----CCCc-CCCccCC---CccEEEEECCCCH---HHHHHHHH
Confidence 3333345899999999999999999999999986542 5553 3543321 3457888766532 01111111
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHH
Q 039035 119 FAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS--GLDSTS 196 (646)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts--gLD~~~ 196 (646)
.+.. ... ....+++++.+++.+..+.. +..||+||++++ ++++.+|+++++||||+ ++|...
T Consensus 89 ---~~g~-~~~----~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~ 152 (279)
T 1nlf_A 89 ---ALGA-HLS----AEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENA 152 (279)
T ss_dssp ---HHHT-TSC----HHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred ---HHHh-hcC----hhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCc
Confidence 1111 111 13456778888887655433 467999998875 58889999999999999 999744
Q ss_pred ---HHHHHHHHHHHHH-cCCEEEEEecCCc
Q 039035 197 ---AYSVIEKVHNIAR-SGSTVILTIHQPS 222 (646)
Q Consensus 197 ---~~~i~~~l~~l~~-~g~tii~~~H~~~ 222 (646)
..++++.|+++++ .|+|||+++|+..
T Consensus 153 ~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 153 SGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4888899999874 5999999999964
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=9e-18 Score=182.26 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=98.3
Q ss_pred CCceEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 8 FTGGLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 8 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..+.|+++||+++|.+ +.+++++||+| +|+||||||||||+++|+|...+....|.+.+++.
T Consensus 8 ~~~~l~~~~l~~~y~~------------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~ 69 (418)
T 2qag_C 8 LEGYVGFANLPNQVYR------------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIK 69 (418)
T ss_dssp -------CCCCCCTTT------------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC----
T ss_pred CcCcEEEEecceeECC------------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCc
Confidence 3457899999887742 46999999998 99999999999999999998864331122222221
Q ss_pred eCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHH
Q 039035 88 ETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGER 167 (646)
Q Consensus 88 ~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 167 (646)
+ ....+.+++++|++.+++.+||.||+.+..... ..+....+.+.++ ..++.+++
T Consensus 70 ~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~-----~~~~~~~i~~~i~-----------------~~~~~~l~ 124 (418)
T 2qag_C 70 K---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD-----NSNCWQPVIDYID-----------------SKFEDYLN 124 (418)
T ss_dssp ----CCEEEEEECC------CEEEEEEECC----------------CHHHHHHHH-----------------HHHHHHTT
T ss_pred c---ceeeeeEEEEEecCCcccceeeeechhhhhhcc-----chhhHHHHHHHHH-----------------HHHHHHHH
Confidence 1 112356899999998888999999988764321 0111111212221 13667788
Q ss_pred HHHHHHHHHHhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 039035 168 RRVSIGVDIIHGPP---LLFLDEPT-SGLDSTSAYSVIEKVHNIARSGSTVILTIHQP 221 (646)
Q Consensus 168 qRv~ia~~L~~~P~---lllLDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 221 (646)
||+.||++++.+|+ +|++|||| .|||+... +.++.+.. +.+||+++|..
T Consensus 125 qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 125 AESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp TSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 89999999999999 99999999 69998773 44455544 78888888864
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.62 E-value=1.3e-17 Score=166.08 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=100.2
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCH----HHH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTV----FET 116 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv----~e~ 116 (646)
+-.-..++|++++|+||||||||||+++|+|+.+|+...|.|.+.+++... ..++.++|++|++..|+.+++ .|+
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 334567999999999999999999999999998763346999998876543 234678999997655544443 222
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTS 196 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~ 196 (646)
+.+... .. +.| +++ +.+++..++++||| ||+..
T Consensus 87 ~~~~~~------------------------------~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGN------------------------------YY------GTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTE------------------------------EE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhc------------------------------cC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 211100 00 111 111 33455568999999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHHH
Q 039035 197 AYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLHV 253 (646)
Q Consensus 197 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~f 253 (646)
+.++.+.+. +++||++++|++.. +.+ |+ +.+| .++++++...+
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHH
Confidence 999999876 58999999999653 433 43 6667 56677666544
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.57 E-value=1.1e-18 Score=169.01 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=112.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPI 128 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 128 (646)
|++++|+||||||||||+++|++ +.. |++.++|.++... ...++++|.....+.+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~--g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLD--NSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSS--SEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccC--CeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 78999999999999999999997 333 8999988654211 234677776644555678888776543210
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccC---CCCCCC--ChHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHH
Q 039035 129 SWSDKKQRVENLVDQLGLTTTRNTHIGD---EGTRGV--SGGERRRVSIGV------DIIHGPPLLFLDEPTSGLDSTSA 197 (646)
Q Consensus 129 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~ia~------~L~~~P~lllLDEPtsgLD~~~~ 197 (646)
. -+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|| |||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0000001110000 001234 888888888888 8999999888884 8999888
Q ss_pred HHHHHHHHHHHHcCCEEEEEecC-CcHHHHhhcCeEEEEeCCeEEEEcChhhHH
Q 039035 198 YSVIEKVHNIARSGSTVILTIHQ-PSSRIQLLLDHLIILARGQLMFQGPPKEVT 250 (646)
Q Consensus 198 ~~i~~~l~~l~~~g~tii~~~H~-~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 250 (646)
.. .+.++.+.+.+.+||.++|+ ++ ++.++||+|+ ++|+++..|+++.+.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 88 88888886668899999998 65 4788999998 999999999887654
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=1.1e-15 Score=150.77 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=102.3
Q ss_pred ccccccee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 36 VDLLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 36 ~~iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
...|+++. +-+++|++++|.||||||||||++.|++ .++. +.++++. ++. .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~--~v~~i~~-----------------~~~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGK--KVAYVDT-----------------EGG----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCS--EEEEEES-----------------SCC----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCC--cEEEEEC-----------------CCC----CCHH
Confidence 45677777 4899999999999999999999999999 2222 3333332 211 1111
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH--HHHHHHHHHHHhC-CCEEEEeCCCCC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE--RRRVSIGVDIIHG-PPLLFLDEPTSG 191 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~ia~~L~~~-P~lllLDEPtsg 191 (646)
.+.-... ...... +++++.+.+ ...|+++ ++++..+++++.+ |+++++||||++
T Consensus 61 -~~~~~~~--~~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 -RLVQMAE--TRGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp -HHHHHHH--TTTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred -HHHHHHH--hcCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1110000 001111 122332221 1245553 5688888899986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHHc-CCEEEEEecCCcH------------HHHhhcCeEEEEeCC
Q 039035 192 LDST--------SAYSVIEKVHNIARS-GSTVILTIHQPSS------------RIQLLLDHLIILARG 238 (646)
Q Consensus 192 LD~~--------~~~~i~~~l~~l~~~-g~tii~~~H~~~~------------~i~~~~D~v~~L~~G 238 (646)
+|+. ...++++.|++++++ |.|||+++|.... .+.+.+|.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 335566778888764 9999999998541 467899999999864
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=2e-14 Score=137.50 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=67.5
Q ss_pred CCCCChHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEE
Q 039035 159 TRGVSGGERRRVSIGVDIIH----GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLII 234 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~----~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~ 234 (646)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|++||+. .+.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999875 46899999985 35789999986
Q ss_pred Ee--CCe
Q 039035 235 LA--RGQ 239 (646)
Q Consensus 235 L~--~G~ 239 (646)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 553
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=1.4e-15 Score=163.22 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=98.5
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
+|++++ +++|++++|+||||||||||+++|+|.+++. + |+|.+.|.++.. .+++.++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~--g~I~~~e~~~e~-~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKS--YHIITIEDPIEY-VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSC--CEEEEEESSCCS-CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCC--cEEEEecccHhh-hhccCceEEEeee-----------
Confidence 566665 7999999999999999999999999998775 5 999887766542 3456788888841
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTS 196 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~ 196 (646)
+|++ +..+ +.+|+.+|..+|+++++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 1124 468999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEe
Q 039035 197 AYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILA 236 (646)
Q Consensus 197 ~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~ 236 (646)
.... ++. +..|.+|+.++|+.+ +.+.+||++.|.
T Consensus 224 ~~~~---l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 4433 333 456899999999954 567888887654
No 119
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.6e-16 Score=168.29 Aligned_cols=171 Identities=14% Similarity=0.181 Sum_probs=113.1
Q ss_pred ccceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 039035 39 LNKITGDAPKGCI--TAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 39 L~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
|+++|+++++|++ ++|+||||||||||+|+|+|..-. |.-... ......++.++|++|++.+++.+||.||
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D~ 102 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE----GEPATH---TQPGVQLQSNTYDLQESNVRLKLTIVST 102 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--CEEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc----CCcCCC---CCccceEeeEEEEeecCccccccchhhh
Confidence 9999999999999 999999999999999999998421 221100 1112234579999999998889999999
Q ss_pred HHHHHHccCCCCCHH----HHHHHHHHHHHHc-CCCc----ccccc----cc--CCCCCCCChHHHHHHHHHHHHHhCCC
Q 039035 117 LMFAADFRLGPISWS----DKKQRVENLVDQL-GLTT----TRNTH----IG--DEGTRGVSGGERRRVSIGVDIIHGPP 181 (646)
Q Consensus 117 l~~~~~~~~~~~~~~----~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqRv~ia~~L~~~P~ 181 (646)
+.|+..... ...+. ...+..++.++.. ++.. ..|+. +. .+..++|+-.+ +.|+++|..+++
T Consensus 103 ~~~g~~~~~-~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~ 178 (427)
T 2qag_B 103 VGFGDQINK-EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVN 178 (427)
T ss_dssp ECCCC-CCH-HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSE
T ss_pred hhhhhcccc-chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCC
Confidence 876432100 00001 1234455666655 5432 12222 10 11123577666 789999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 039035 182 LLFLDEPTSGLDSTSAYSVIEKVHN-IARSGSTVILTIHQ 220 (646)
Q Consensus 182 lllLDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~~H~ 220 (646)
++++||||..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 179 vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 179 IIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999986 87789999988865
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.52 E-value=2.5e-17 Score=159.40 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=96.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-cccccEEEEccCCCCCCCCCHHHHHHHHHHc
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-LIKRTSAYIMQEDRLFPMLTVFETLMFAADF 123 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~ 123 (646)
.+++|++++|+||||||||||+++|+|. ++. |.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~--g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGV--PKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSS--CEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCC--CeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 3689999999999999999999999997 455 9999998764211 11234677877644 457889998765432
Q ss_pred cC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 039035 124 RL-GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIE 202 (646)
Q Consensus 124 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~ 202 (646)
.. .+.. ..++.+++..++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 10 0000 00111111111111110 0 1123469999999999999999999876 68887777777
Q ss_pred HHHHHHHcCCEEEEEec
Q 039035 203 KVHNIARSGSTVILTIH 219 (646)
Q Consensus 203 ~l~~l~~~g~tii~~~H 219 (646)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433333444443
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.51 E-value=3.3e-15 Score=159.76 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=101.4
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee-CCcccccccEEEEc-cCCCCCCCCCHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-TSPSLIKRTSAYIM-QEDRLFPMLTVFE 115 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~-Q~~~l~~~lTv~e 115 (646)
+++++|+.+++|++++|+||||||||||+++|+|.+++++ |.|.++|.. ......++.++|++ |++.+-
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~--g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~------- 234 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ--RLITIEDVPELFLPDHPNHVHLFYPSEAKEE------- 234 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS--CEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc--eEEEECCccccCccccCCEEEEeecCccccc-------
Confidence 3499999999999999999999999999999999999876 999999853 22223567789998 654320
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST 195 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~ 195 (646)
++++...|..|+.++..+|+.+++|||+.
T Consensus 235 ----------------------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 235 ----------------------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ----------------------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 11222345556666667899999999986
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCe
Q 039035 196 SAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQ 239 (646)
Q Consensus 196 ~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~ 239 (646)
.++.+.++.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3455667766554568899999965 567899999887764
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=1.5e-17 Score=168.34 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=102.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHc-
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLA---GRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADF- 123 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~---G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~- 123 (646)
++++++|+||||||||||+++|+ |...++. |+|.++|.+.. ......+.+++|+..+++..++.|++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~--G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS--GHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH--HHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecH--HHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9988866 88888775432 12334456677888888888999999875421
Q ss_pred -----cCCCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCCCCCCCChHHHHHHHHHHHH-HhCCCEEEEe--
Q 039035 124 -----RLGPISWSDKKQRVENLVDQLGLT--TTR-------NTHIGDEGTRGVSGGERRRVSIGVDI-IHGPPLLFLD-- 186 (646)
Q Consensus 124 -----~~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L-~~~P~lllLD-- 186 (646)
...+.+... ..++.+.+..... -.. -..+.++.+..||| |+ +++ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 011111111 1222222111111 000 01122334457999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHc
Q 039035 187 --EPTSGLDSTSAYSVIEKVHNIARS 210 (646)
Q Consensus 187 --EPtsgLD~~~~~~i~~~l~~l~~~ 210 (646)
|||+|||..+...+.+.++++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.50 E-value=8e-18 Score=180.42 Aligned_cols=166 Identities=15% Similarity=0.050 Sum_probs=102.3
Q ss_pred cccceeEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCcc--eeEEEEC----CeeCC--cccccccEEEEccCCCC
Q 039035 38 LLNKITGDAPK--GCITAVMGPSGAGKSTLLDGLAGRIASGSL--KGKVTLD----GKETS--PSLIKRTSAYIMQEDRL 107 (646)
Q Consensus 38 iL~~vs~~i~~--Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~--~G~I~~~----g~~~~--~~~~~~~i~yv~Q~~~l 107 (646)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++.+. .|+|.++ |.+.. ...+ +.+++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 56789999999 999999999999999999999999987430 0555442 22110 0111 123333332111
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH-hCCCEEEEe
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII-HGPPLLFLD 186 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-~~P~lllLD 186 (646)
+. .|+.||+.+ ++ .+..++ .+..+|+|++||..+++++. .+|++++||
T Consensus 236 ~~-~t~~~nl~~------------------------~~-~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~lllLd 284 (365)
T 1lw7_A 236 YA-VRHSHKIAF------------------------ID-TDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVTILL 284 (365)
T ss_dssp HH-HHHCSSEEE------------------------ES-SCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEE
T ss_pred HH-HhccCCEEE------------------------Ee-CCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEEEEC
Confidence 00 111111110 00 000011 11246677788888888775 599999999
Q ss_pred C---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 187 E---PT------SGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 187 E---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
| |+ .++|+..+..+.+.|+++.+ .|.+|++++|. + ...+++|++.++++
T Consensus 285 E~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 285 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp ECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 9 65 58999999999999999865 48999999975 3 35567777666643
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=7.1e-18 Score=177.47 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=106.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC--------CCCcceeEEEECCeeCCcc------------------cccccEEEE-
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI--------ASGSLKGKVTLDGKETSPS------------------LIKRTSAYI- 101 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~--------~~~~~~G~I~~~g~~~~~~------------------~~~~~i~yv- 101 (646)
=++++|.|+||||||||||.|.|.. .++. |+|.++|.++... .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~--G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEF--GEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSC--CSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecC--cccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 3689999999999999999999986 4555 9999999876421 234457777
Q ss_pred --ccCCCCCCCCCHHHHHHHHHHccC-CCC---CHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHH
Q 039035 102 --MQEDRLFPMLTVFETLMFAADFRL-GPI---SWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVD 175 (646)
Q Consensus 102 --~Q~~~l~~~lTv~e~l~~~~~~~~-~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~ 175 (646)
+|+..+++..+|.|+..++..... ... +......+++.++..+++.+..+... ++|+||+||+..++.
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEE
Confidence 677766677788877654210000 000 00000111222333344444333322 589999999998888
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcC
Q 039035 176 IIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 176 L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D 230 (646)
++++|+++ ||| .++.+.|+++. .+.+|++++|++.+ +..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 88999987 998 77888888875 58999999998653 444444
No 125
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.48 E-value=2.1e-14 Score=152.40 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=89.6
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCcceeEEEEC-CeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA-SGSLKGKVTLD-GKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~-~~~~~G~I~~~-g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
-+++++.. .+|++++|+||||||||||+|+|+|... +.+ |+|.++ |+... ...++.+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~--G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT--NDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC--C--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc--CCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 45666664 4899999999999999999999999998 876 999987 76543 234567999999998999989988
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHH
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDI 176 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L 176 (646)
+ .+...+.++..+.+.++++.+|+.+..|... .++| ||+||++||+++
T Consensus 281 ~-------~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F-------GLWHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp C-------CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred h-------hhcCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 4 1223556666778889999999987766554 5799 999999999754
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=6.6e-14 Score=140.08 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=89.9
Q ss_pred ccccee-EEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCC---cceeEEEECCeeC-Cccc---ccccEEEEccCCCC
Q 039035 38 LLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASG---SLKGKVTLDGKET-SPSL---IKRTSAYIMQEDRL 107 (646)
Q Consensus 38 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~---~~~G~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l 107 (646)
-|+.+- +-+++|++++|+||||||||||++.|++ ..++. ...|.+++++.+. .... ..+.+++.+|
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---- 87 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS---- 87 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH----
Confidence 444443 6799999999999999999999999999 44431 0126777766532 1100 0111111111
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHH-HHHHHHHH--hCCCEEE
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRR-VSIGVDII--HGPPLLF 184 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~ia~~L~--~~P~lll 184 (646)
++++.+.+ ....+..+... +.-+.+++ .+|++++
T Consensus 88 -------------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lli 124 (243)
T 1n0w_A 88 -------------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLI 124 (243)
T ss_dssp -------------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred -------------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 11221111 01234444332 22233333 5899999
Q ss_pred EeCCCCCCCHH-------H-----HHHHHHHHHHHHHc-CCEEEEEecCCcHH------------------HHhhcCeEE
Q 039035 185 LDEPTSGLDST-------S-----AYSVIEKVHNIARS-GSTVILTIHQPSSR------------------IQLLLDHLI 233 (646)
Q Consensus 185 LDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-g~tii~~~H~~~~~------------------i~~~~D~v~ 233 (646)
+|||++.+|+. . ..++++.|++++++ |+|||+++|..... +..++|.++
T Consensus 125 iD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi 204 (243)
T 1n0w_A 125 VDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL 204 (243)
T ss_dssp EETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEE
T ss_pred EeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEE
Confidence 99999999975 3 34566667777654 99999999964321 222789999
Q ss_pred EEeCCe
Q 039035 234 ILARGQ 239 (646)
Q Consensus 234 ~L~~G~ 239 (646)
+|++|+
T Consensus 205 ~l~~~~ 210 (243)
T 1n0w_A 205 YLRKGR 210 (243)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 998753
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=2.5e-15 Score=141.82 Aligned_cols=79 Identities=22% Similarity=0.155 Sum_probs=66.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
++.+++++|+++++|++++|+||||||||||+|+|+|.+ |.+ |+|.++|.++....-.+. +++|+..++ .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~--G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ--GNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC--SCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC--CeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 356899999999999999999999999999999999999 766 999999987742211122 799998888 89999
Q ss_pred HHHHH
Q 039035 115 ETLMF 119 (646)
Q Consensus 115 e~l~~ 119 (646)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=4.4e-15 Score=162.63 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=105.7
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------c--ccccEEEEccCCCCCC
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------L--IKRTSAYIMQEDRLFP 109 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~--~~~~i~yv~Q~~~l~~ 109 (646)
-+++|+++++|++++|+||||||||||+++|+|++++.. |+|.++|.+.... . .++.++|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~--G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG--KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC--CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999998766 9999987765321 1 2567999999988888
Q ss_pred CCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH-hCCC-EEEEeC
Q 039035 110 MLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII-HGPP-LLFLDE 187 (646)
Q Consensus 110 ~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-~~P~-lllLDE 187 (646)
.+||++++.++..-. .+ . -+++..|+.+... .+-...+|++.+++++. ..|+ +||..+
T Consensus 361 ~~tV~e~l~~a~~~~---~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 361 ASVIFDAIQAAKARN---ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHHTT---CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHHhcC---CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 899999998864311 00 0 0111122211110 11122347788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecC
Q 039035 188 PTSGLDSTSAYSVIEKVHNIAR-SGSTVILTIHQ 220 (646)
Q Consensus 188 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~~H~ 220 (646)
+|+|.|.. +.++.+.+ -|.|.++.||-
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 88886543 33444543 48899999994
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.44 E-value=5.3e-16 Score=148.32 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=90.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCC------ccccc-ccEE----EEccCCCCCCCCCHHHHH
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETS------PSLIK-RTSA----YIMQEDRLFPMLTVFETL 117 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~------~~~~~-~~i~----yv~Q~~~l~~~lTv~e~l 117 (646)
++++|+|+||||||||+++|+|++++. -..|.|.++|.++. ...+| +.+| +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998775 11399999998732 22344 3566 888877654 110
Q ss_pred HHHHHccCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEE-------EEeCCC
Q 039035 118 MFAADFRLGPISWSDKKQRVENLVDQ-LGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLL-------FLDEPT 189 (646)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~ll-------lLDEPt 189 (646)
. . .+....++++++. +. ..|+.++. +||||||||++|||+++.+|++. .-|.|.
T Consensus 77 --------~--~-~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------V--S-EEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------C--C-HHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------C--C-hhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 0 0 1112245566665 43 35788875 59999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 039035 190 SG---LDSTSAYSVIEKVHNIARSGS 212 (646)
Q Consensus 190 sg---LD~~~~~~i~~~l~~l~~~g~ 212 (646)
.+ +|......+.+.+.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 344456777777766666553
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.41 E-value=5.2e-13 Score=143.25 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhc
Q 039035 157 EGTRGVSGGERRRV------SIGVDIIHG-PPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLL 229 (646)
Q Consensus 157 ~~~~~LSgGerqRv------~ia~~L~~~-P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~ 229 (646)
..++.||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++. +..++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 34568999999988 557888999 999999999999999999999999998753 579999999974 56899
Q ss_pred CeEEEEeC
Q 039035 230 DHLIILAR 237 (646)
Q Consensus 230 D~v~~L~~ 237 (646)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999974
No 131
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.41 E-value=8.2e-14 Score=130.09 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=72.9
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee--EEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG--KVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
.+|+++ +|+.++|+||||+|||||+++|++...+ + | .+++++.+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~--g~~~~~~~~~~~~~-----------------~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-A--GKNAAYIDAASMPL-----------------T----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-T--TCCEEEEETTTSCC-----------------C-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-c--CCcEEEEcHHHhhH-----------------H-----
Confidence 466666 8999999999999999999999998764 2 5 34443322110 0
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
+++.+|++|++|||++ +|.
T Consensus 79 ------------------------------------------------------------~~~~~~~lLilDE~~~-~~~ 97 (149)
T 2kjq_A 79 ------------------------------------------------------------DAAFEAEYLAVDQVEK-LGN 97 (149)
T ss_dssp ------------------------------------------------------------GGGGGCSEEEEESTTC-CCS
T ss_pred ------------------------------------------------------------HHHhCCCEEEEeCccc-cCh
Confidence 1245799999999998 665
Q ss_pred HHHHHHHHHHHHHHHcCCE-EEEEecCCcH
Q 039035 195 TSAYSVIEKVHNIARSGST-VILTIHQPSS 223 (646)
Q Consensus 195 ~~~~~i~~~l~~l~~~g~t-ii~~~H~~~~ 223 (646)
..+..+.+++.++.++|++ +|+++|.+..
T Consensus 98 ~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 98 EEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 5588899999999888888 8999996543
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=8.8e-14 Score=133.39 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=78.8
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH
Q 039035 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD 122 (646)
Q Consensus 43 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~ 122 (646)
++.+++|+.++|.||||+|||||+++|++...+.. |.. +.| +++.|.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~---------------~~~----------~~~~~~~~~~-- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIR---------------GYF----------FDTKDLIFRL-- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCC---------------CCE----------EEHHHHHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCe---------------EEE----------EEHHHHHHHH--
Confidence 45678899999999999999999999999875432 310 111 2233332111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHH
Q 039035 123 FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS-GLDSTSAYSVI 201 (646)
Q Consensus 123 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts-gLD~~~~~~i~ 201 (646)
......-. .. -....+.+|++|+||||++ ++|+..+..+.
T Consensus 83 ---------------~~~~~~~~----------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 83 ---------------KHLMDEGK----------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ---------------HHHHHHTC----------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ---------------HHHhcCch----------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 01111000 00 1122345999999999985 99999999999
Q ss_pred HHHHHHHHcCCEEEEEecCCcHH
Q 039035 202 EKVHNIARSGSTVILTIHQPSSR 224 (646)
Q Consensus 202 ~~l~~l~~~g~tii~~~H~~~~~ 224 (646)
+++.+..++|+++|++||.+..+
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHHcCCCEEEEcCCChhH
Confidence 99999888899999999997653
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=5.1e-14 Score=148.29 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=109.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------ccc--ccEEEEccCCCCCCCCCHHHH
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------LIK--RTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~~--~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
.++|++++|+||||||||||+++|+|.+++.. |+|.++|.++... .++ ..+.+++|+..+.|.+||+|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 37899999999999999999999999998876 9999999986421 122 236699999999999999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTS 196 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~ 196 (646)
+.++..... . . .+++..|+.+..+.. ..+|| .+++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~-d--------~--vliDtaG~~~~~~~l-----~~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGI-D--------V--VLIDTAGRSETNRNL-----MDEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTC-S--------E--EEEEECCSCCTTTCH-----HHHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccc-h--------h--hHHhhccchhHHHHH-----HHHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 987642110 0 0 011222332211111 11233 38888887777888885443
Q ss_pred HHHHHHHHHHHHH-cCCEEEEEecCCcH--------HHHhhcCeEEEEeCCeEE
Q 039035 197 AYSVIEKVHNIAR-SGSTVILTIHQPSS--------RIQLLLDHLIILARGQLM 241 (646)
Q Consensus 197 ~~~i~~~l~~l~~-~g~tii~~~H~~~~--------~i~~~~D~v~~L~~G~iv 241 (646)
.++++.++.+.+ .+.|+|++||.... ......-.|..+..|+-+
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 456666677764 58999999996421 123334466777766544
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.39 E-value=1.3e-15 Score=161.36 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=109.4
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc-------cccccEEEEccCCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS-------LIKRTSAYIMQEDRLF 108 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~-------~~~~~i~yv~Q~~~l~ 108 (646)
+.+|+++|+++++|++++|+||||||||||+++|+|.+.+.. |+|.+.|.+.... ..++.++|++|++.++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~--g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG--HKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC--CEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 468999999999999999999999999999999999988866 9999999876321 2456789999998876
Q ss_pred CCC------------CHHHHHHHHHH----cc---CCCC--------------------C-HHHHH---HHHHHHHHHcC
Q 039035 109 PML------------TVFETLMFAAD----FR---LGPI--------------------S-WSDKK---QRVENLVDQLG 145 (646)
Q Consensus 109 ~~l------------Tv~e~l~~~~~----~~---~~~~--------------------~-~~~~~---~~v~~~l~~lg 145 (646)
+.. +++|.+..... +. .+++ . .++.+ +.+.+....+.
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 532 12333211000 00 0000 0 01100 01111111122
Q ss_pred CCccccccccCCCCCCCChHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 039035 146 LTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIH------GPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209 (646)
Q Consensus 146 L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~------~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 209 (646)
+ ...|. ...+.+|+|++|++..+++++. +|++++ ||++|.....++++.|.++.+
T Consensus 200 l-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 V-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp E-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred E-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 2 11121 1124589999999999999887 688887 999999999999999988754
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=3.9e-14 Score=147.76 Aligned_cols=121 Identities=16% Similarity=0.195 Sum_probs=84.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE---CCeeCCcc--ccc-ccEEEEccCCCCC-----CCCCHH
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL---DGKETSPS--LIK-RTSAYIMQEDRLF-----PMLTVF 114 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~g~~~~~~--~~~-~~i~yv~Q~~~l~-----~~lTv~ 114 (646)
+.+|++++|+||||||||||+|+|+ ...+.+ |+|.+ +|++.+.. ..+ +.+|||+|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~--G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRT--QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCC--SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcc--cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4579999999999999999999999 888876 99999 89876532 222 3689999998653 78899
Q ss_pred HHH--HHH----HHccCCC-CCHHHHHHHHHHHHHHcCCCc-cccccccCCCCCCCChHHHHHHHHHHH
Q 039035 115 ETL--MFA----ADFRLGP-ISWSDKKQRVENLVDQLGLTT-TRNTHIGDEGTRGVSGGERRRVSIGVD 175 (646)
Q Consensus 115 e~l--~~~----~~~~~~~-~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~ 175 (646)
|++ .|. ..++... .+.++...+++++++.++|.+ ..+.+ ++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----LKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----HHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----HHHHHHHHHHHHHHhcc
Confidence 888 443 1112212 222334467999999999985 55544 35799999999999873
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=1.8e-14 Score=156.32 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=99.1
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLM 118 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~ 118 (646)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .+...+|+|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999999742 12333222 12233555555430 0011111100
Q ss_pred HH--HHccCCCCCHHHH--HHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 119 FA--ADFRLGPISWSDK--KQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 119 ~~--~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
+. +.. ...+..... .++++.++..+++. +..+..+|+|++|++.++++|+.+|.++++ +++|.
T Consensus 215 li~~a~~-~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 215 IIEGASE-GKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCGGG-SCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred cccchhh-hhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 00 000 001111100 11122233333332 223457999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHH-HcCCEEEEEecCCcHHHHhhcCeE
Q 039035 195 TSAYSVIEKVHNIA-RSGSTVILTIHQPSSRIQLLLDHL 232 (646)
Q Consensus 195 ~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~i~~~~D~v 232 (646)
..+ ..++.+++.. +.|.+++.+|..-...+.++++.+
T Consensus 282 ~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 282 LEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp SCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 877 4555555444 457777766543344466666554
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.32 E-value=6.8e-14 Score=144.99 Aligned_cols=132 Identities=11% Similarity=0.094 Sum_probs=89.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHH---
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAAD--- 122 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~--- 122 (646)
-+++.+++|.||||||||||.+.|++.+.+. | . . ++.+.+|+||+.+++. ++++++.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~---g----------~-~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK---Y----------G-G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH---H----------G-G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc---C----------C-C-CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 3578999999999999999999999988542 2 0 1 3456677999988875 88999887631
Q ss_pred -ccCCCCCHHHHHHHHHHHHHHcCCC--cc--ccccccCCCCCCCChHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHH
Q 039035 123 -FRLGPISWSDKKQRVENLVDQLGLT--TT--RNTHIGDEGTRGVSGGERRRVSIG--VDIIHGPPLLFLDEPTSGLDST 195 (646)
Q Consensus 123 -~~~~~~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~LSgGerqRv~ia--~~L~~~P~lllLDEPtsgLD~~ 195 (646)
+...+.+.....+...+.++.+.-. .. ....+ ..+.+.+||||+||+.+| +++ +|+|||+|||++++|+.
T Consensus 92 l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 92 LLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhhccCcchhHHHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 1111111111234556666766432 00 11111 123467999999999987 555 99999999999999985
Q ss_pred H
Q 039035 196 S 196 (646)
Q Consensus 196 ~ 196 (646)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.1e-12 Score=139.01 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=79.4
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCcceeEEEECCeeCCc-ccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAG-RIASGSLKGKVTLDGKETSP-SLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPIS 129 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G-~~~~~~~~G~I~~~g~~~~~-~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 129 (646)
+.|.||||+|||||+++|+| +..++. |++.++|.+... ...+..+++++|.+.+.-... + . ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~--g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~--~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV--YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M--GNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC--CC------------------CCEECSSEEEECCC---------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC--CeEEecceeecccccccceeeeecccceEEecHh--h-------c--CCcc
Confidence 89999999999999999999 677766 999999976542 122456888888764321110 0 0 0011
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 039035 130 WSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209 (646)
Q Consensus 130 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 209 (646)
.. .+++.++.+.-....+..+ .+|| +..+|+++++|||++ ||+.++..+.+.+.+..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred hH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 11 2333444332211111111 3566 788999999999999 99999999999998864
Q ss_pred cCCEEEEEecCCcHHHHhhcCe
Q 039035 210 SGSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 210 ~g~tii~~~H~~~~~i~~~~D~ 231 (646)
.+.++|+++|++......+.+|
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTT
T ss_pred CCCEEEEEeCCHHHHHHHHHhh
Confidence 4789999999986433333344
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.30 E-value=5.9e-15 Score=164.31 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=109.7
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee-CCcccccccEEEEccCCC--------
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE-TSPSLIKRTSAYIMQEDR-------- 106 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~-~~~~~~~~~i~yv~Q~~~-------- 106 (646)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|.++|.+ ... ...+.++++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~--giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA--KVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC--CEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC--CEEEEcCcccccC-CCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998876 999998864 221 11234555555433
Q ss_pred --------------CCCCCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCc---------cccccccCCCCCC
Q 039035 107 --------------LFPMLTVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTT---------TRNTHIGDEGTRG 161 (646)
Q Consensus 107 --------------l~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~---------~~~~~vg~~~~~~ 161 (646)
+++.++..|++.+...+..+. ++. .....++++++++.... ..+..+ .....
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~ 400 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMW 400 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEE
Confidence 223445555444322221110 000 00011333444443321 011000 11235
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCCcHHHHhhcC
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVIL--TIHQPSSRIQLLLD 230 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~~H~~~~~i~~~~D 230 (646)
+||||+||++++. + | |+|||+.....+++.+.++.++|+|+++ ++|+.. ++.+.|+
T Consensus 401 ~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 401 VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 7999999877652 2 7 9999998877777777777667889885 889864 4555553
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.28 E-value=8.6e-12 Score=134.61 Aligned_cols=155 Identities=16% Similarity=0.225 Sum_probs=91.6
Q ss_pred cccce-eEEEeCCeEEEEECCCCCcHHHHHHHH--HcCCCCCc---ceeEEEECCeeC-Cccc---ccccEEEEccCCCC
Q 039035 38 LLNKI-TGDAPKGCITAVMGPSGAGKSTLLDGL--AGRIASGS---LKGKVTLDGKET-SPSL---IKRTSAYIMQEDRL 107 (646)
Q Consensus 38 iL~~v-s~~i~~Ge~~aI~GpsGaGKSTLL~~L--~G~~~~~~---~~G~I~~~g~~~-~~~~---~~~~i~yv~Q~~~l 107 (646)
-|+.+ .+-+++|++++|+||||||||||++.| .+..+++. -.+.|++++++. .... +.+.+|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 34443 367999999999999999999999944 56665422 124666666432 1000 0011111111
Q ss_pred CCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCCh-HHHHHHHHHHHHH--hCCCEEE
Q 039035 108 FPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSG-GERRRVSIGVDII--HGPPLLF 184 (646)
Q Consensus 108 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~~L~--~~P~lll 184 (646)
.+++.+- +. +..++ .+.+.+.-+.+++ .+|++++
T Consensus 242 -------------------------------~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llV 278 (400)
T 3lda_A 242 -------------------------------DALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIV 278 (400)
T ss_dssp -------------------------------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEE
T ss_pred -------------------------------hHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEE
Confidence 1111111 11 11222 1223333333333 4799999
Q ss_pred EeCCCCCCCHHHH------------HHHHHHHHHHHHc-CCEEEEEecCCc------------------HHHHhhcCeEE
Q 039035 185 LDEPTSGLDSTSA------------YSVIEKVHNIARS-GSTVILTIHQPS------------------SRIQLLLDHLI 233 (646)
Q Consensus 185 LDEPtsgLD~~~~------------~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~ 233 (646)
+||||+.+|+... .++++.|++++++ |.|||+++|... ..+.+.+|.++
T Consensus 279 IDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl 358 (400)
T 3lda_A 279 VDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRL 358 (400)
T ss_dssp EETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEE
T ss_pred ecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEE
Confidence 9999999996533 6688889998865 999999999821 22467789999
Q ss_pred EEeCCe
Q 039035 234 ILARGQ 239 (646)
Q Consensus 234 ~L~~G~ 239 (646)
.|++++
T Consensus 359 ~L~~~~ 364 (400)
T 3lda_A 359 GFKKGK 364 (400)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 998764
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=2.1e-14 Score=155.88 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=94.2
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-------ccccccEEEEc------
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-------SLIKRTSAYIM------ 102 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~~~~i~yv~------ 102 (646)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+.+ |+|.+.|.++.. ..+++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~--g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE--RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT--SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC--CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 3467777 4 38999999999999999999999999998876 999999887642 12344556655
Q ss_pred ---cCCCC--CCC----CCHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHH
Q 039035 103 ---QEDRL--FPM----LTVFETLMFAADFRL--GPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVS 171 (646)
Q Consensus 103 ---Q~~~l--~~~----lTv~e~l~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 171 (646)
|++.. ++. .|+.+++.++..-.. .........+ +.+.+..+|+.+.. . +..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~-----~~~LSgg~~QR-- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--I-----SSSLLGVLAQR-- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--H-----HHHEEEEEEEE--
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--H-----HHHHHHHHHHH--
Confidence 88754 344 689999887642110 0011111112 22356778887542 1 34799999999
Q ss_pred HHHHHHhCCCEEE
Q 039035 172 IGVDIIHGPPLLF 184 (646)
Q Consensus 172 ia~~L~~~P~lll 184 (646)
||++|+.+|++..
T Consensus 302 LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEECTTTCEEE
T ss_pred hhhhhcCCCCccC
Confidence 9999999999876
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=7.9e-15 Score=157.65 Aligned_cols=169 Identities=17% Similarity=0.176 Sum_probs=119.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC------------CCCCcceeEEEECCeeCCc--c--ccccc---EEEEccCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGR------------IASGSLKGKVTLDGKETSP--S--LIKRT---SAYIMQED 105 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~------------~~~~~~~G~I~~~g~~~~~--~--~~~~~---i~yv~Q~~ 105 (646)
.+++|+.++|+|+||||||||+|+|+|. ..|. +|.|.++|..+.. . ..++. ..++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~--~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE--EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT--EEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce--eeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 6689999999999999999999999993 3344 4999999854321 0 11222 34777888
Q ss_pred CCCCCCCHHHHH--HHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCC--C
Q 039035 106 RLFPMLTVFETL--MFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGP--P 181 (646)
Q Consensus 106 ~l~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P--~ 181 (646)
.+.+..+..|++ .|...++. ++.++..++..+ +..+..+||+. +| +
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~-----------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~d 143 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRA-----------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRD 143 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTT-----------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHH-----------HHHHHHHHhccc-------cceeeeecccc------------Ccchh
Confidence 888887776655 44333321 111111122111 22223466653 89 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCCcHHHHhhcCeEE-EEeCC-eEEEEcChhh
Q 039035 182 LLFLDEPTSGLDSTSAYSVIEKVHNI-ARSGSTVILTIHQPSSRIQLLLDHLI-ILARG-QLMFQGPPKE 248 (646)
Q Consensus 182 lllLDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~g~~~~ 248 (646)
++++|||+.++|+....+.++.++.+ ++.|.||+ +|+. ..+.++||++. +|.+| ++++.|+.++
T Consensus 144 i~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 144 LSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999999999998 77788865 9985 46889999999 99999 9988776543
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.20 E-value=6.2e-14 Score=137.98 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=89.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFR 124 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 124 (646)
.++|++++|+||||||||||+++|+|++++. ...|.|.++|..... +..+++.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~--------------------~~~~~~~~~~~-- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN--------------------RLLEPRGLLPR-- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH--------------------HHHGGGTCGGG--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH--------------------HHHHHhccccc--
Confidence 5899999999999999999999999998752 112555555443321 11111100000
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 039035 125 LGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIG-VDIIHGPPLLFLDEPTSGLDSTSAYSVIEK 203 (646)
Q Consensus 125 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~~L~~~P~lllLDEPtsgLD~~~~~~i~~~ 203 (646)
......-......+.+..+...+..+..+.+.. ..+|+||+||++++ ++++.++.++++|||.-
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 000000001122233333322222223333322 35799999999987 77788888888888741
Q ss_pred HHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeCCeEEEEcChhhHHHH
Q 039035 204 VHNIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGPPKEVTLH 252 (646)
Q Consensus 204 l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 252 (646)
.++.+.--.++++.+.....+.++..|. +..|+ +.+++...
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~ 182 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVAR 182 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHH
Confidence 1112222467778777655466667662 34454 45555543
No 144
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=1.8e-12 Score=134.94 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=68.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE---CCeeCCcc-c-ccccEEEEccCCCCCC----CCCHH
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL---DGKETSPS-L-IKRTSAYIMQEDRLFP----MLTVF 114 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~g~~~~~~-~-~~~~i~yv~Q~~~l~~----~lTv~ 114 (646)
+.+.+|++++|+||||+|||||+|+|+|...+.+ |+|.+ +|+..+.. . ++..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~--G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT--NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc--cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 5677999999999999999999999999998876 99998 88766431 1 2222799999987655 6899
Q ss_pred HHHH--HHH------HccCCC-CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHH
Q 039035 115 ETLM--FAA------DFRLGP-ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERR 168 (646)
Q Consensus 115 e~l~--~~~------~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 168 (646)
|++. |.. .|+... ...++....++++++.++|.+.+.... ..++.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 331 122221 122233457899999999976433222 246777766
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=2e-13 Score=144.40 Aligned_cols=166 Identities=19% Similarity=0.153 Sum_probs=106.2
Q ss_pred cccccceeEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCCC--cceeEEEECCeeCCc---ccccccEEEEcc
Q 039035 36 VDLLNKITGDAPKG-------CITAVMGPSGAGKSTLLDGLAGRIASG--SLKGKVTLDGKETSP---SLIKRTSAYIMQ 103 (646)
Q Consensus 36 ~~iL~~vs~~i~~G-------e~~aI~GpsGaGKSTLL~~L~G~~~~~--~~~G~I~~~g~~~~~---~~~~~~i~yv~Q 103 (646)
..+++++++.+++| +.++|.||||+|||||+++|+|..... ..+|++..++.++.. ...++.+.|+.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45889999999887 899999999999999999999987211 123666655544321 112457999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCC
Q 039035 104 EDRLFPMLTVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPP 181 (646)
Q Consensus 104 ~~~l~~~lTv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~ 181 (646)
.+.+.+ ++.|++.......... .......+.++..++.++|.. +++.. ..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~-------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII-------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE--------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce--------
Confidence 887766 7888886543322100 011222334555555566643 44443 47999999998654
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCcHHHHhhcCe
Q 039035 182 LLFLDEPTSGLDSTSAYSVIEKVHNIARS-GSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 182 lllLDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~~H~~~~~i~~~~D~ 231 (646)
.+||+.+..++.++|++.++. + +.|++ +.+..++++
T Consensus 175 --------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 175 --------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp --------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred --------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 788888899999999998753 4 25664 345556554
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.12 E-value=4.5e-12 Score=132.09 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=71.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE---CCeeCCcc--cc-cccEEEEccCCC-----------
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL---DGKETSPS--LI-KRTSAYIMQEDR----------- 106 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~---~g~~~~~~--~~-~~~i~yv~Q~~~----------- 106 (646)
+.+.+|++++|+||||||||||||+|+|+.+|++ |+|.+ +|++++.. .. .+.+|||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~--G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV--SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccc--cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456899999999999999999999999999977 99999 89876531 12 236899999974
Q ss_pred -----CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCCCCCh
Q 039035 107 -----LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLT-TTRNTHIGDEGTRGVSG 164 (646)
Q Consensus 107 -----l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 164 (646)
++|.+|+ ||+.|.. +. ...+...+++++++.+||. +..+.+ ++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~----~~~e~~~~v~~~l~~~~L~~~~~~~~-----~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN----HVDEPECGVKEAVENGEIAESRYENY-----VKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC----SSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc----CCCCCCcHHHHHHHcCCCCHHHHHHH-----HHHHHH
Confidence 5889999 9988752 21 1123346789999999995 444443 345664
No 147
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.11 E-value=4.6e-11 Score=131.55 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=115.6
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee-EEEECCeeCCccccccc-EEEEccCCCCCCCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG-KVTLDGKETSPSLIKRT-SAYIMQEDRLFPMLT 112 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~~~g~~~~~~~~~~~-i~yv~Q~~~l~~~lT 112 (646)
+...|+++.+-+++|+++.|.|++|+|||||+..+++...+.. | .|.+.+.+.+...+.++ .+.... ..
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~ 259 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMRMLCAEGN-------IN 259 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHHHHHHHHT-------CC
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHHHHHHHcC-------CC
Confidence 3567899998999999999999999999999999988654321 3 44444333322211111 000000 00
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCCC
Q 039035 113 VFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII--HGPPLLFLDEPTS 190 (646)
Q Consensus 113 v~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~--~~P~lllLDEPts 190 (646)
. + +++.+.++.++ .+++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 260 ~-~------~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 260 A-Q------NLRTGKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp H-H------HHHTSCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred H-H------HHhcCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 0 0 01112233333 34566666666543321 211 2469999987 5667676 6899999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHHc-CCEEEEEec---------C--Cc-------HHHHhhcCeEEEEeCCeE
Q 039035 191 GLD--------STSAYSVIEKVHNIARS-GSTVILTIH---------Q--PS-------SRIQLLLDHLIILARGQL 240 (646)
Q Consensus 191 gLD--------~~~~~~i~~~l~~l~~~-g~tii~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 240 (646)
..+ .....++.+.|+.++++ |++||+++| + |. ..+.+.+|.|++|.+++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 774 23446778888888864 999999999 2 42 146778999999987754
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.11 E-value=8.5e-15 Score=143.24 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEEEeC
Q 039035 172 IGV-DIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLIILAR 237 (646)
Q Consensus 172 ia~-~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~L~~ 237 (646)
.++ +++.+|++++|||+|+++|..+...+.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 344 677788888889999999999999999988887653 2334532 46899887753
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.11 E-value=6.3e-12 Score=125.77 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=45.3
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEecCCcHH-------HHhhcCeEEEEeC
Q 039035 178 HGPPLLFLDEPTSGL--DSTSAYSVIEKVHNIA-RSGSTVILTIHQPSSR-------IQLLLDHLIILAR 237 (646)
Q Consensus 178 ~~P~lllLDEPtsgL--D~~~~~~i~~~l~~l~-~~g~tii~~~H~~~~~-------i~~~~D~v~~L~~ 237 (646)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6555566666666665 5699999999986531 4577899999975
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.10 E-value=3.9e-14 Score=145.74 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=90.1
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc---cccccEEEEccCC-CCCCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS---LIKRTSAYIMQED-RLFPM 110 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~---~~~~~i~yv~Q~~-~l~~~ 110 (646)
...+++++++.+++| ++|.||||||||||+++|+|...+ |.|.++|.++... ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 999999999999999999998754 7899999776421 2235577888874 45666
Q ss_pred CCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 039035 111 LTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS 190 (646)
Q Consensus 111 lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPts 190 (646)
+++.|++......+ .. ...+ .+....+.. +..|||||+||+.|++++.++|++| |||+.
T Consensus 106 i~~~Deid~~~~~r------~~--~~~~------~~~~~~~~~-----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALCPRR------SD--RETG------ASVRVVNQL-----LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTCC-----------------------CTTHHHHH-----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhhccc------CC--Ccch------HHHHHHHHH-----HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 66666665322111 00 0000 011222222 3469999999999999999999985 88864
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.02 E-value=1.4e-10 Score=120.93 Aligned_cols=114 Identities=18% Similarity=0.290 Sum_probs=82.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFA 120 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~ 120 (646)
.+++..++|++++|+|||||||||++..|++.+.+.. |+|.+.+.+.... + ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~~r~------~-------------a~------ 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADTFRA------A-------------AI------ 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCH------H-------------HH------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccccccH------H-------------HH------
Confidence 3556678999999999999999999999999987654 7888766543210 0 01
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 039035 121 ADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRV---SIGVDIIHGPPLLFLDEPTSGLDSTSA 197 (646)
Q Consensus 121 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~ia~~L~~~P~lllLDEPtsgLD~~~~ 197 (646)
+....+++.+|+.. + ...|||+.+++ ++++++..+|+++|+|||.. ....
T Consensus 149 --------------eqL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 149 --------------EQLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp --------------HHHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred --------------HHHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 11234455666642 1 24689999999 89999999999999999974 3445
Q ss_pred HHHHHHHHHHH
Q 039035 198 YSVIEKVHNIA 208 (646)
Q Consensus 198 ~~i~~~l~~l~ 208 (646)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.96 E-value=1.1e-09 Score=116.36 Aligned_cols=155 Identities=20% Similarity=0.325 Sum_probs=90.5
Q ss_pred cccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 37 DLLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 37 ~iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
.-|+.+- +-+++|+++.|.||||+|||||+..++....... |. +.|+.-+...-+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~----------------vlyi~~E~~~~~----- 103 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GI----------------AAFIDAEHALDP----- 103 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CC----------------EEEEESSCCCCH-----
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC--Ce----------------EEEEECCCCcCH-----
Confidence 3455543 4799999999999999999999888775432211 22 334433221100
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhC--CCEEEEeCCCCCC
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHG--PPLLFLDEPTSGL 192 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~--P~lllLDEPtsgL 192 (646)
. ++ +.+|+.. .+-.+-+ ..+.. +-+.++++++.+ |+++++|||++.+
T Consensus 104 -~--~a---------------------~~lG~~~-~~l~i~~----~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 104 -E--YA---------------------KKLGVDT-DSLLVSQ----PDTGE--QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp -H--HH---------------------HHTTCCG-GGCEEEC----CSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred -H--HH---------------------HHcCCCH-HHeEEec----CCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 0 01 1122210 0001111 12322 345677778754 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH----HHcCCEEEEEecCCcH---------------HHHhhcCeEEEEeCCeE
Q 039035 193 ----------DS---TSAYSVIEKVHNI----ARSGSTVILTIHQPSS---------------RIQLLLDHLIILARGQL 240 (646)
Q Consensus 193 ----------D~---~~~~~i~~~l~~l----~~~g~tii~~~H~~~~---------------~i~~~~D~v~~L~~G~i 240 (646)
|+ ..+..+.+.++++ .+.|+|||+++|.... .+..++|.++.++++++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2223445555555 3459999999996431 25678999999988776
Q ss_pred EEEcC
Q 039035 241 MFQGP 245 (646)
Q Consensus 241 v~~g~ 245 (646)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65443
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.96 E-value=3.8e-11 Score=125.39 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=70.3
Q ss_pred ccccceeEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCC--CCcceeEEEE---CCeeCCcc
Q 039035 37 DLLNKITGDA-------------------PKGCITAVMGPSGAGKSTLLDGLAGRIA--SGSLKGKVTL---DGKETSPS 92 (646)
Q Consensus 37 ~iL~~vs~~i-------------------~~Ge~~aI~GpsGaGKSTLL~~L~G~~~--~~~~~G~I~~---~g~~~~~~ 92 (646)
++++++++.+ ++|+++||+||||||||||+++|+|++. |++ |+|.+ +|.....
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~--G~i~vi~~d~~~~~~- 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH--RRVELITTDGFLHPN- 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC--CCEEEEEGGGGBCCH-
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC--CeEEEEecCCccCcH-
Confidence 4788999888 9999999999999999999999999887 766 99999 8876543
Q ss_pred cccccEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 039035 93 LIKRTSAYIMQEDRLFPMLTVFETLMFAADFR 124 (646)
Q Consensus 93 ~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~ 124 (646)
..++.+|++ |+..+++.+|+.+++.+...++
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 234567888 8778888999999998876553
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.95 E-value=2.2e-11 Score=134.81 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=100.1
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHc--CCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCC--CHHHH
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAG--RIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPML--TVFET 116 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G--~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~l--Tv~e~ 116 (646)
.+++++.++..++|.|++||||||+|++|.. +.+.+. |++.+.+.+.....+.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p--~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP--EDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC--ceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 4788899999999999999999999999875 334333 66766665543211110 0011111 12122
Q ss_pred HHHHHH-ccCCCCCHHHHHHHHHHHHHHcCCCcccc--ccccCCCCCCCChHHHHHH----------HHHHHHHhCCC-E
Q 039035 117 LMFAAD-FRLGPISWSDKKQRVENLVDQLGLTTTRN--THIGDEGTRGVSGGERRRV----------SIGVDIIHGPP-L 182 (646)
Q Consensus 117 l~~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~vg~~~~~~LSgGerqRv----------~ia~~L~~~P~-l 182 (646)
...+.. ++ ...++.++| .++++..|+.+..+ ..+ ...+||||+||. .+++++...|. +
T Consensus 229 ~~~a~~~L~---~~~~EmerR-~~ll~~~Gv~~i~~yn~~~----~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 MKDAANALR---WCVNEMERR-YKLMSALGVRNLAGYNEKI----AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHH---HHHHHHHHH-HHHHHHTTCSSHHHHHHHH----HHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHH---HHHHHHHHH-HHHHHHcCCccHHHHHHHH----HHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 221111 11 112455555 37788888875432 111 124788887752 24555667887 7
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEecCCc
Q 039035 183 LFLDEPTSGLDSTSAYSVIEKVHNIARS----GSTVILTIHQPS 222 (646)
Q Consensus 183 llLDEPtsgLD~~~~~~i~~~l~~l~~~----g~tii~~~H~~~ 222 (646)
+++||++.-+|.. ..++.+.+.++++. |.++|++||+|+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9999999988843 34566666666543 789999999997
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.95 E-value=1.7e-09 Score=112.18 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=84.1
Q ss_pred cceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHH
Q 039035 40 NKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMF 119 (646)
Q Consensus 40 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 119 (646)
+++++. +|++++|+|+||+||||++..|++.+.+.. |+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~------------------~-~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAA------------------R-EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHH------------------H-HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhH------------------H-HHH--
Confidence 678888 999999999999999999999999987654 888887765431100 0 000
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHH
Q 039035 120 AADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP-TSGLDSTSAY 198 (646)
Q Consensus 120 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP-tsgLD~~~~~ 198 (646)
..+.+..|+..... + .+-...+.+|.+++.+...+++++|+||| ++|+|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01223445542211 0 01234456788999888899999999999 9999998888
Q ss_pred HHHHHHHHH
Q 039035 199 SVIEKVHNI 207 (646)
Q Consensus 199 ~i~~~l~~l 207 (646)
++.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 888776665
No 156
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=1.8e-13 Score=136.75 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=23.3
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHH-cCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA-GRIAS 75 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~-G~~~~ 75 (646)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999 98743
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.92 E-value=9.6e-10 Score=114.09 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=89.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLG 126 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~ 126 (646)
++|++++|+||||+||||+++.|++.+.+.. | +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK--H---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT--C---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--C---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 5799999999999999999999999886544 5 23566666542 235555554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 039035 127 PISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN 206 (646)
Q Consensus 127 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~ 206 (646)
+..|+... . ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 158 ---------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 158 ---------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ---------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ---------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12233211 0 1122 23344555 45999999999 999998766544444333
Q ss_pred HH---HcCCEEEE-EecCCcHHHHhhcCeEEEEeCCeEEEE
Q 039035 207 IA---RSGSTVIL-TIHQPSSRIQLLLDHLIILARGQLMFQ 243 (646)
Q Consensus 207 l~---~~g~tii~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 243 (646)
+. ..+.++++ ++|.. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 32 22344555 47874 457788888776666777764
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.87 E-value=3.6e-10 Score=124.23 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=48.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
..+|+++|+++++ |+++|+|||||||||||++|+|+++|++ |+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL--TLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT--TTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC--CEEEECCEEcc
Confidence 3589999999999 9999999999999999999999999987 99999998764
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=1.9e-10 Score=111.94 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=46.6
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHHH
Q 039035 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 43 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56778999999999999999999999999863 35556654332 1234568899997665555444443
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.81 E-value=3.4e-12 Score=131.19 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=84.4
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCC-CCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDR-LFPML 111 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~l 111 (646)
..+++++++.+++| ++|+||||+|||||+++|++... . |.|.++|.++.. ....+.+++++|+.. ..+.+
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~--~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--V--PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--C--CEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--C--CEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 45788999999999 89999999999999999999874 3 899998865421 112345677888753 56777
Q ss_pred CHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCE
Q 039035 112 TVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPL 182 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~l 182 (646)
++.|++......+... ...++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 8888885432211100 01122223333332 24899999999999999999976
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=6.5e-10 Score=107.26 Aligned_cols=141 Identities=20% Similarity=0.205 Sum_probs=76.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---------cceeEEEECCeeCCc-----ccccccEEEEccCCCC-CCCCCHHH
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIASG---------SLKGKVTLDGKETSP-----SLIKRTSAYIMQEDRL-FPMLTVFE 115 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~~---------~~~G~I~~~g~~~~~-----~~~~~~i~yv~Q~~~l-~~~lTv~e 115 (646)
.++|+|+||||||||++.++|...+. ..+|+|.++|+++.. ....+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 58999999999999999999986541 035999999976421 0111112222221100 00011111
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHc---CCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQL---GLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGL 192 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~l---gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgL 192 (646)
.. .. ...+.+..+++.+ .-....-..+++. .+|..-..+.+.+|++++.+|+++++| ||++
T Consensus 111 ~~-----------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 111 IA-----------KH-LTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp TT-----------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred Cc-----------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 10 00 0011111111111 1111100112221 123332334578899999999999999 9999
Q ss_pred CHHHHHHHHHHHHHH
Q 039035 193 DSTSAYSVIEKVHNI 207 (646)
Q Consensus 193 D~~~~~~i~~~l~~l 207 (646)
|.....++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988653
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.78 E-value=1.1e-10 Score=133.00 Aligned_cols=160 Identities=14% Similarity=0.112 Sum_probs=100.3
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCC--------
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDR-------- 106 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~-------- 106 (646)
...+++++++.+++|+.++|+||||+|||||+++|++...+.. -|.+.+++.+.+. ....++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET-LEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS-CEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc-CCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 3568899999999999999999999999999999999987653 3888888876542 3456888887431
Q ss_pred --------------CCCCCCHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHH
Q 039035 107 --------------LFPMLTVFETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSI 172 (646)
Q Consensus 107 --------------l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 172 (646)
.+..+++.+|+.... ......+. ..+.....-+.+|.-+... ....++|+|++|++..
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~~~~~--v~~~~~~~~~L~G~~~~~~-----~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRTKAPF--IDATGAHAGALLGDVRHDP-----FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TTCSSCCE--EECTTCCHHHHHCEECCCC-----C----CCCCGGGGEEC
T ss_pred Hhhccchhhhhhcccccccccccceeecc-ccCCCCCE--EEcCCCCHHhcCceEEech-----hhcCCccccccccccC
Confidence 111111111111000 00000000 0000000111222111111 1124699999999999
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 039035 173 GVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHN 206 (646)
Q Consensus 173 a~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~ 206 (646)
+.....++.+|||||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899888888888764
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.76 E-value=5.6e-12 Score=127.56 Aligned_cols=127 Identities=17% Similarity=0.283 Sum_probs=85.6
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCC-CCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDR-LFPML 111 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~-l~~~l 111 (646)
..+++++++.+++| ++|.||||+|||||+++|++... . |.|.++|.++.. ....+.+++++|+.. ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~--~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--V--PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--C--CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--C--CEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999 99999999999999999999774 3 889998865421 112344667787743 56677
Q ss_pred CHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCC
Q 039035 112 TVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEP 188 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEP 188 (646)
++.|++......+... ...++..+.+.+++. .|||||+||+.+++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 7878774332211100 011222233333332 4889999999999999999976 4543
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.71 E-value=6.3e-10 Score=110.86 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=42.1
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-----------ccccccEEEEccC
Q 039035 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-----------SLIKRTSAYIMQE 104 (646)
Q Consensus 43 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-----------~~~~~~i~yv~Q~ 104 (646)
++++++ ++++|+|||||||||||++|+|.+.|++ |+|.++|.++.. ...+..++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL--TLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT--TTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC--CeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 8999999999999999999999999987 999999987621 1235679999984
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.64 E-value=1.4e-08 Score=107.76 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=47.7
Q ss_pred cccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE-EECCeeCCcccccccEEEEccCCCCCCCCCH
Q 039035 37 DLLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV-TLDGKETSPSLIKRTSAYIMQEDRLFPMLTV 113 (646)
Q Consensus 37 ~iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I-~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv 113 (646)
.-|+.+- +-+++|+++.|.||||+|||||+..+++...+.. |.+ ++++.........+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455554 4799999999999999999999999998765433 544 5555433222223344555544333333344
Q ss_pred HH
Q 039035 114 FE 115 (646)
Q Consensus 114 ~e 115 (646)
.+
T Consensus 125 e~ 126 (356)
T 3hr8_A 125 EQ 126 (356)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.59 E-value=2.9e-09 Score=101.72 Aligned_cols=39 Identities=28% Similarity=0.378 Sum_probs=34.8
Q ss_pred ccc--cceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 039035 37 DLL--NKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASG 76 (646)
Q Consensus 37 ~iL--~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~ 76 (646)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7899999999 99999999999999999999987654
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=3.9e-08 Score=95.07 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 039035 170 VSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIA 208 (646)
Q Consensus 170 v~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~ 208 (646)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.49 E-value=8.6e-09 Score=109.99 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=87.7
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC---------cceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH--
Q 039035 48 KGCI-TAVMGPSGAGKSTLLDGLAGRIASG---------SLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE-- 115 (646)
Q Consensus 48 ~Ge~-~aI~GpsGaGKSTLL~~L~G~~~~~---------~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e-- 115 (646)
.|-. ++|+|++|||||||+|.|+|..... ..+|.|.++|.++. +....|++.|.+. ..|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 9999999999999999999976421 24589999986542 2233455544221 11211
Q ss_pred -HHHHHH--Hc--cCCCCC-----HHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHH----HHH-HhCC
Q 039035 116 -TLMFAA--DF--RLGPIS-----WSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIG----VDI-IHGP 180 (646)
Q Consensus 116 -~l~~~~--~~--~~~~~~-----~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia----~~L-~~~P 180 (646)
++.... .+ ..-..+ ..+..+.+.++++.+++.+..--.+++ +...+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 111100 00 000111 122334567888888876543112222 1234788888888887 444 3334
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 039035 181 PLLFLDEPTSGLDSTSAYSVIEKVHNIAR 209 (646)
Q Consensus 181 ~lllLDEPtsgLD~~~~~~i~~~l~~l~~ 209 (646)
++ +|+|++|.....++.+.|.++..
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 44 89999999999999999988654
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=1.4e-07 Score=103.80 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCc
Q 039035 164 GGERRRVSIGVDIIHGPPLLFLDEP----------TSGLDSTSAYSVIEKVHNIA----RSGSTVILTIHQPS 222 (646)
Q Consensus 164 gGerqRv~ia~~L~~~P~lllLDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tii~~~H~~~ 222 (646)
|++++|..++.+....|.+||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 34677776667777777663 34789999999974
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=6.8e-09 Score=100.99 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc--cccccEEEEccCC
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS--LIKRTSAYIMQED 105 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~--~~~~~i~yv~Q~~ 105 (646)
+-....++|++++|+||||||||||+++|+|.+ |.+.++|.++... ..+...|+++|+.
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 334566899999999999999999999999965 7888988765421 1122356777653
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=4.3e-07 Score=106.10 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCCcHHHHhhcCeE
Q 039035 159 TRGVSGGERRRVSIGVDIIHGPPLLFLDEPTS-GLDSTSAYSVIEKVHNIARSGSTVILT-IHQPSSRIQLLLDHL 232 (646)
Q Consensus 159 ~~~LSgGerqRv~ia~~L~~~P~lllLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~-~H~~~~~i~~~~D~v 232 (646)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.++|+++ ||++. .+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCC
Confidence 34589999999999999999999999999996 999887777777666655456788885 89864 567777753
No 172
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.35 E-value=3.6e-07 Score=96.11 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=86.3
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHH
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVF 114 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~ 114 (646)
+..-|+.+.+-+.+|+++.|.|++|+|||||+.-++...... | ..+.|+.= .++..
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---------g---------~~Vl~fSl------Ems~~ 87 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---------D---------RGVAVFSL------EMSAE 87 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---------T---------CEEEEEES------SSCHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------C---------CeEEEEeC------CCCHH
Confidence 355688888889999999999999999999998887643211 1 12334331 12332
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 039035 115 ETLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDS 194 (646)
Q Consensus 115 e~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~ 194 (646)
+. ..+.......+++.+..+ ..||++|.+|+..|...+.++++++.|+|...
T Consensus 88 ql-----------------~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--- 139 (338)
T 4a1f_A 88 QL-----------------ALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--- 139 (338)
T ss_dssp HH-----------------HHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC---
T ss_pred HH-----------------HHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc---
Confidence 22 222222222222221111 25999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHHc--CCEEEEEec
Q 039035 195 TSAYSVIEKVHNIARS--GSTVILTIH 219 (646)
Q Consensus 195 ~~~~~i~~~l~~l~~~--g~tii~~~H 219 (646)
..++...++++.++ |..+|++-|
T Consensus 140 --i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 --IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33677777777654 677777754
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.33 E-value=5.1e-08 Score=98.50 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEeccccccccccccccccccceeEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 11 GLGFSNL-TYTVTKKKKIEGTWLKEEVDLLNKITGDAPK---GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 11 ~l~~~~l-s~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.|+++|+ +++|.. ...+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~-----------~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE-----------EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC-----------cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7999999 998832 24699999999999 9999999999999999999999865
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.30 E-value=1.5e-08 Score=98.65 Aligned_cols=53 Identities=36% Similarity=0.486 Sum_probs=44.0
Q ss_pred cccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEE--EECCeeC
Q 039035 34 EEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKV--TLDGKET 89 (646)
Q Consensus 34 ~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I--~~~g~~~ 89 (646)
......+.++...++|++++|+||||||||||+++|++.+. .. |.+ +++|.++
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~--G~~~~~~d~d~~ 64 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QK--GKLCYILDGDNV 64 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEEEHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hc--CceEEEecCchh
Confidence 34556778888889999999999999999999999999875 33 776 8887654
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.27 E-value=2.1e-07 Score=90.24 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=28.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASG 76 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~ 76 (646)
++++|++++|+||||||||||+++|++...|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998654
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.26 E-value=3e-06 Score=88.46 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=32.5
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
+..-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3456888888899999999999999999999888774
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.25 E-value=1.9e-07 Score=97.82 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=58.1
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc-------ccc-----cccEEEE-ccCC
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP-------SLI-----KRTSAYI-MQED 105 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~-------~~~-----~~~i~yv-~Q~~ 105 (646)
++++++.+++|++++|+||||+||||++..|++.+.+.. |+|.+.+.+... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 368999999999999999999999999999999887655 899998877532 112 4568888 6665
Q ss_pred CCCCCCCHHHHHH
Q 039035 106 RLFPMLTVFETLM 118 (646)
Q Consensus 106 ~l~~~lTv~e~l~ 118 (646)
...|..++.+++.
T Consensus 173 ~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 173 NADPASVVFDAIK 185 (320)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4444434444443
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.24 E-value=6.5e-08 Score=97.81 Aligned_cols=64 Identities=25% Similarity=0.207 Sum_probs=48.8
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCcceeEEE--------ECCeeCCc----ccccccEEEE
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA---GRIASGSLKGKVT--------LDGKETSP----SLIKRTSAYI 101 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~---G~~~~~~~~G~I~--------~~g~~~~~----~~~~~~i~yv 101 (646)
.++++.+ ++|++++|+|||||||||++++|+ |+..+++ |.|. .+|.++.. ..+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~--g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS--GAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH--HHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC--CceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3455543 789999999999999999999999 9887776 9998 88887632 2356778999
Q ss_pred ccCC
Q 039035 102 MQED 105 (646)
Q Consensus 102 ~Q~~ 105 (646)
+|++
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8754
No 179
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.19 E-value=2.4e-06 Score=90.79 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=48.4
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCc
Q 039035 160 RGVSGGERRRVSIGVDIIHGPPLLFLD-EPTSGLDSTSAYSVIEKVHNIARSGSTVILTI--HQPS 222 (646)
Q Consensus 160 ~~LSgGerqRv~ia~~L~~~P~lllLD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~--H~~~ 222 (646)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+.+... +.++|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 468999998876 55555677789999 99999999998888887777654 78888888 7754
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.17 E-value=1e-08 Score=113.58 Aligned_cols=129 Identities=17% Similarity=0.265 Sum_probs=84.8
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcc---cccccEEEEccCCC-CCCCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPS---LIKRTSAYIMQEDR-LFPML 111 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~---~~~~~i~yv~Q~~~-l~~~l 111 (646)
..+++++++.+++| +.|.||||+|||||+++|++... . |.|.++|.++... ...+.+..++|+.. ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~--~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--V--PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--C--CEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--C--CEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 35788999999999 89999999999999999999764 3 8899998765321 11233556666643 34555
Q ss_pred CHHHHHHHHHHccCCC--CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC
Q 039035 112 TVFETLMFAADFRLGP--ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPT 189 (646)
Q Consensus 112 Tv~e~l~~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPt 189 (646)
.+.|++......+... ...++..+.+.+++. .+||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 5555553211111100 112333344444443 3788888888888888899987 78876
Q ss_pred C
Q 039035 190 S 190 (646)
Q Consensus 190 s 190 (646)
.
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 4
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=3.5e-07 Score=87.78 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=25.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
|++++|+||||||||||+++|+|+.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.14 E-value=3.1e-07 Score=89.36 Aligned_cols=137 Identities=13% Similarity=0.202 Sum_probs=75.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCH
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPISW 130 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 130 (646)
+++|+|||||||||+.++|+++ |...+++.++ .+... + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~~----~~~~~----~-----~-----------------~--- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADVV----AREVV----A-----K-----------------D--- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHHH----HHHTT----C-----S-----------------S---
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHHH----HHHHc----c-----C-----------------C---
Confidence 6899999999999999999982 3333332111 00000 0 0 0
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 039035 131 SDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARS 210 (646)
Q Consensus 131 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~ 210 (646)
...+.++.+.+|... -.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .
T Consensus 44 ---~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ---CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ---hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 012345556666431 13678888999988888887644332 3345555555554444322 3
Q ss_pred CCEEEEEecCCcHH-HHhhcCeEEEEeCCeEEEEcChhhHHHHH
Q 039035 211 GSTVILTIHQPSSR-IQLLLDHLIILARGQLMFQGPPKEVTLHV 253 (646)
Q Consensus 211 g~tii~~~H~~~~~-i~~~~D~v~~L~~G~iv~~g~~~~~~~~f 253 (646)
+.++|+.+|...+. ....||.+++|+ .+++...+..
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl 141 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD-------VSPQTQLARS 141 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHH
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE-------CCHHHHHHHH
Confidence 56888888875432 246788887774 4555554443
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.10 E-value=1.3e-06 Score=95.52 Aligned_cols=94 Identities=12% Similarity=0.272 Sum_probs=61.5
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCeEEE-EeCCeEEEEcChhh--HHH--
Q 039035 178 HGPPLLFLDEPTSGLDS-TSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDHLII-LARGQLMFQGPPKE--VTL-- 251 (646)
Q Consensus 178 ~~P~lllLDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~v~~-L~~G~iv~~g~~~~--~~~-- 251 (646)
.+|++|++||+..-.+. .++..+.+.+..+.+.|+.||+++|.+..++..+.+++.- +..|.++..++++. ...
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999877664 6778899999998888999999999865433223333332 45577777666532 222
Q ss_pred --HHHhcCCCCCCCCChHHHHHHh
Q 039035 252 --HVNRLGRKVPKGENSIEYLIDV 273 (646)
Q Consensus 252 --~f~~~g~~~p~~~~~~d~~~~~ 273 (646)
.....|...++ +..+++.+.
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~ 294 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAEN 294 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHH
T ss_pred HHHHHHcCCCCCH--HHHHHHHHh
Confidence 23344655543 345555543
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.09 E-value=9.3e-06 Score=86.18 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=36.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCc
Q 039035 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR---SGSTVILTIHQPS 222 (646)
Q Consensus 178 ~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~~H~~~ 222 (646)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888877665 5789999999974
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.08 E-value=8.4e-06 Score=86.54 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEec
Q 039035 162 VSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSG-STVILTIH 219 (646)
Q Consensus 162 LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~~H 219 (646)
-++.++++..+++..+.+|+++++.-..+..|... ....++++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445433 45566777776555 56666665
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.03 E-value=1.2e-06 Score=100.62 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=77.0
Q ss_pred eEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCc---ccccccEEEEccCCCCCCCCCHHHHHHH
Q 039035 43 TGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSP---SLIKRTSAYIMQEDRLFPMLTVFETLMF 119 (646)
Q Consensus 43 s~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~---~~~~~~i~yv~Q~~~l~~~lTv~e~l~~ 119 (646)
|+.+++|+.++|+|++|+|||||++.|++...+....|+| .+|..... ...++.+++..|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 3567889999999999999999999999765442234777 56654432 1234455665554332221 1100
Q ss_pred HHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 039035 120 AADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPTSGLDSTSAYS 199 (646)
Q Consensus 120 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~~~~~ 199 (646)
.+ .|+. |. ..++ .......-..+..++++| |+.|+++.+.
T Consensus 77 -------------------------nl---iDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-- 116 (665)
T 2dy1_A 77 -------------------------FL---LDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE-- 116 (665)
T ss_dssp -------------------------EE---EECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH--
T ss_pred -------------------------EE---EeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH--
Confidence 01 1111 10 0111 112222235677889999 9999998776
Q ss_pred HHHHHHHHHHcCCEEEEEecCCc
Q 039035 200 VIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 200 i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
+.++.+.+.+.++|++.|..+
T Consensus 117 --~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 --RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp --HHHHHHHHTTCCEEEEEECGG
T ss_pred --HHHHHHHHccCCEEEEecCCc
Confidence 333444456889999999864
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=2.1e-06 Score=83.08 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=24.9
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
....++|||+.+++|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999865
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.01 E-value=2.4e-05 Score=82.58 Aligned_cols=144 Identities=16% Similarity=0.170 Sum_probs=79.3
Q ss_pred cccee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHH
Q 039035 39 LNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAGRI-ASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFET 116 (646)
Q Consensus 39 L~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~ 116 (646)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+... | | ....+.|+.-+..+ ....-
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~-g-----g-------~~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG-G-----Y-------PGGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT-T-----B-------CCCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc-C-----C-------CCCeEEEEECCCCC----CHHHH
Confidence 44443 579999999999999999999999888742 22110 0 0 01234455443321 22222
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHH----hCCCEEEEeCCCCC
Q 039035 117 LMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE-RRRVSIGVDII----HGPPLLFLDEPTSG 191 (646)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~----~~P~lllLDEPtsg 191 (646)
.....++ +.+. +++++.+.+. +..++.+ .+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~---g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRF---NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHT---TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHc---CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2222221 1221 1233322111 1123333 24455566666 56899999999986
Q ss_pred CCHH------------HHHHHHHHHHHHHH-cCCEEEEEecCC
Q 039035 192 LDST------------SAYSVIEKVHNIAR-SGSTVILTIHQP 221 (646)
Q Consensus 192 LD~~------------~~~~i~~~l~~l~~-~g~tii~~~H~~ 221 (646)
.+.. ...++++.|+++++ .|.+||++.|-.
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 5432 13456666667765 489999888853
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.95 E-value=1.4e-06 Score=86.59 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=36.0
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 42 ITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 42 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
-++..++|++++|.|+||||||||+++|+|. . |+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~--g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----K--NDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----T--TTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----c--CCeEEEecCH
Confidence 3445689999999999999999999999997 2 8898888764
No 190
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.94 E-value=3.5e-06 Score=80.31 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEEC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLD 85 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~ 85 (646)
.+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeecc
Confidence 368999999999999999999999987532 23655443
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.90 E-value=5.3e-05 Score=79.19 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=79.7
Q ss_pred ccccee-EEEeCCeEEEEECCCCCcHHHHHHHHHcCC-CCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 38 LLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAGRI-ASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 38 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~-~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
-|+.+- +-+++|+++.|.||+|+|||||+..++... .+... | | ....+.|+.-+..+ ....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~-g-----g-------~~~~vlyi~~e~~~----~~~~ 157 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEK-G-----G-------LSGKAVYIDTEGTF----RWER 157 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGG-T-----C-------CSCEEEEEESSSCC----CHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccccc-C-----C-------CCCeEEEEECCCCC----CHHH
Confidence 344443 579999999999999999999998888643 22110 1 1 01234455433321 1221
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHH-HHHHHHHHHHH---hCCCEEEEeCCCCC
Q 039035 116 TLMFAADFRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGE-RRRVSIGVDII---HGPPLLFLDEPTSG 191 (646)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~---~~P~lllLDEPtsg 191 (646)
-.....++ +.+.+ ++++.+- +. +..++.+ .+.+..++.++ .+|+++++|+.++-
T Consensus 158 l~~~~~~~---g~~~~-------~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 158 IENMAKAL---GLDID-------NVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHT---TCCHH-------HHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHh---CCCHH-------HHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 11111111 11211 1222211 11 1133332 35677777777 57999999999875
Q ss_pred CCH--------H----HHHHHHHHHHHHHH-cCCEEEEEecC
Q 039035 192 LDS--------T----SAYSVIEKVHNIAR-SGSTVILTIHQ 220 (646)
Q Consensus 192 LD~--------~----~~~~i~~~l~~l~~-~g~tii~~~H~ 220 (646)
.+. . ...++++.|+++++ .|.+||++.|-
T Consensus 216 ~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 216 FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 432 1 12455566666665 48999998775
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.89 E-value=6.9e-05 Score=76.81 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEecCCc---HHH
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTSGLDST----------SAYSVIEKVHNIAR----SGSTVILTIHQPS---SRI 225 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tii~~~H~~~---~~i 225 (646)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777788899999999998765532 22334444443321 2456788888753 334
Q ss_pred HhhcCeEEEE
Q 039035 226 QLLLDHLIIL 235 (646)
Q Consensus 226 ~~~~D~v~~L 235 (646)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456655443
No 193
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.85 E-value=1.4e-05 Score=82.83 Aligned_cols=152 Identities=14% Similarity=0.200 Sum_probs=81.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGPI 128 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 128 (646)
+..++|+|++|+|||||+|.|.|.... + ..+.+- ....+..|++.+++..+ ++.| .++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~------i-~s~~~~--tTr~~~~gi~~~~~~~i---~~iD---------TpG~ 66 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKIS------I-TSRKAQ--TTRHRIVGIHTEGAYQA---IYVD---------TPGL 66 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEE------E-CCCCSS--CCSSCEEEEEEETTEEE---EEES---------SSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcc------c-cCCCCC--cceeeEEEEEEECCeeE---EEEE---------CcCC
Confidence 348999999999999999999996421 0 011111 11234467777654210 0000 0111
Q ss_pred CHHHHHHHHHHHHHH---cCCCcccccc--ccCCCCCCCChHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHH
Q 039035 129 SWSDKKQRVENLVDQ---LGLTTTRNTH--IGDEGTRGVSGGERRRVSIGVDII--HGPPLLFLDEPTSGLDSTS-AYSV 200 (646)
Q Consensus 129 ~~~~~~~~v~~~l~~---lgL~~~~~~~--vg~~~~~~LSgGerqRv~ia~~L~--~~P~lllLDEPtsgLD~~~-~~~i 200 (646)
.. +......+.+.. -.+.. .|.. +-+. .. +|+|++ .++..+. ..|.++++ +.+|... ...+
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l~~-~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSIGD-VELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCCCC-EEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHHhc-CCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 10 000111111110 01111 1111 1111 23 898886 4566666 68889998 7899876 6778
Q ss_pred HHHHHHHHHc-CC--EEEEEecCCcHHHHhhcCeEE
Q 039035 201 IEKVHNIARS-GS--TVILTIHQPSSRIQLLLDHLI 233 (646)
Q Consensus 201 ~~~l~~l~~~-g~--tii~~~H~~~~~i~~~~D~v~ 233 (646)
.+.+.++++. |. .+.++.|+-. .+.+++|.+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 8888888764 43 5666777643 4666777654
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=9.5e-06 Score=79.20 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=27.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999998865
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=4.4e-05 Score=82.82 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFETLMFAADFRLGP 127 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e~l~~~~~~~~~~ 127 (646)
++.+++++||+|+||||++..|++.+.+.. ++|.+-+.+... ....|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r-------------------~~a~eqL---------- 144 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYR-------------------PAAYDQL---------- 144 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSC-------------------HHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccc-------------------hhHHHHH----------
Confidence 588999999999999999999998876543 555554332110 0112222
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 039035 128 ISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFLDEPT-SG--LDSTSAYSVIEKV 204 (646)
Q Consensus 128 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllLDEPt-sg--LD~~~~~~i~~~l 204 (646)
..+.+..|+..... . .+...-+-.+-+++.+...+++++|+|+|. .+ .|+....++.+++
T Consensus 145 ----------~~~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 145 ----------LQLGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp ----------HHHHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred ----------HHHHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 22223334421110 0 011111122233444445689999999997 35 7887777777766
Q ss_pred HHHHHcCCEEEEEecC
Q 039035 205 HNIARSGSTVILTIHQ 220 (646)
Q Consensus 205 ~~l~~~g~tii~~~H~ 220 (646)
+.+......+++..|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 6554444555555553
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.76 E-value=4.6e-06 Score=89.08 Aligned_cols=44 Identities=30% Similarity=0.319 Sum_probs=39.0
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL 84 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 84 (646)
..+|+++++.+++|++++|.||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEE
Confidence 46899999999999999999999999999999999853 377665
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.76 E-value=4.6e-06 Score=80.98 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=35.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
..++|++++|+|+||||||||+++|++.+++.. |+|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~--~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG--ISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CeEEEeccC
Confidence 367899999999999999999999999886544 777776544
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.74 E-value=6.8e-06 Score=77.49 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=31.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 569999999999999999999999864 6677776443
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.74 E-value=9.2e-06 Score=78.80 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998764
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.73 E-value=1.9e-05 Score=76.68 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.+++|++++|+|+||||||||.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999999999975
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.69 E-value=4.8e-06 Score=86.95 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=34.9
Q ss_pred ccccccceeEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 35 EVDLLNKITGDAPKGC------ITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge------~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
.++.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457778888887776 9999999999999999999998763
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=8.8e-06 Score=86.02 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998664
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.63 E-value=0.0003 Score=76.74 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=95.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCCcccccccEEEEccCCCCCCCCCHHH
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETSPSLIKRTSAYIMQEDRLFPMLTVFE 115 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~~~~~~~~i~yv~Q~~~l~~~lTv~e 115 (646)
..-|+.+.+-+++|+++.|.|++|+|||||+..++....... | ..+.|+.=+ ++..+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g---------------~~vl~~slE------~~~~~ 243 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--G---------------VGVGIYSLE------MPAAQ 243 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--C---------------CCEEEEESS------SCHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--C---------------CeEEEEECC------CCHHH
Confidence 446777777899999999999999999999988876432111 1 012222111 12111
Q ss_pred HHHH--HHH-------ccCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHH--hCCCEEE
Q 039035 116 TLMF--AAD-------FRLGPISWSDKKQRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDII--HGPPLLF 184 (646)
Q Consensus 116 ~l~~--~~~-------~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~--~~P~lll 184 (646)
...- +.. ++.+.++.++ .+++.+.++.+.-.+ -.+-+ ..++|..+.+ +.++.+. .+|++++
T Consensus 244 l~~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~---l~i~d--~~~~s~~~l~--~~~~~l~~~~~~~lIv 315 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAP---IYIDD--TPDLTLMEVR--ARARRLVSQNQVGLII 315 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSC---EEEEC--CTTCBHHHHH--HHHHHHHHHSCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCC---EEEEC--CCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 1100 000 0111123332 233444444442211 11211 1357776653 4455555 4899999
Q ss_pred EeCCCCCCCH----------HHHHHHHHHHHHHHHc-CCEEEEEecCCc------------------HHHHhhcCeEEEE
Q 039035 185 LDEPTSGLDS----------TSAYSVIEKVHNIARS-GSTVILTIHQPS------------------SRIQLLLDHLIIL 235 (646)
Q Consensus 185 LDEPtsgLD~----------~~~~~i~~~l~~l~~~-g~tii~~~H~~~------------------~~i~~~~D~v~~L 235 (646)
+|..+.-.+. ....++.+.|+.++++ |++||+++|-.. ..+.+.+|.+++|
T Consensus 316 ID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L 395 (444)
T 2q6t_A 316 IDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFI 395 (444)
T ss_dssp EECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEE
T ss_pred EcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEE
Confidence 9998753322 1234677788888864 899999988321 0245678888887
Q ss_pred eC
Q 039035 236 AR 237 (646)
Q Consensus 236 ~~ 237 (646)
..
T Consensus 396 ~r 397 (444)
T 2q6t_A 396 YR 397 (444)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 204
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=1.1e-05 Score=90.36 Aligned_cols=42 Identities=45% Similarity=0.551 Sum_probs=36.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee-EEE-ECCee
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG-KVT-LDGKE 88 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G-~I~-~~g~~ 88 (646)
.+++|++++|+|+||||||||+++|+|++.+.. | +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~--G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG--GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC--SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC--CceEEEECCcH
Confidence 578999999999999999999999999987754 5 674 77754
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.56 E-value=4.7e-05 Score=70.34 Aligned_cols=30 Identities=33% Similarity=0.637 Sum_probs=25.7
Q ss_pred cceeEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 039035 40 NKITGDAPKGCITAVMGPSGAGKSTLLDGLA 70 (646)
Q Consensus 40 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 70 (646)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4556677766 99999999999999999986
No 206
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.53 E-value=4.2e-06 Score=82.27 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=40.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC---CCCcceeEEEE--------CCeeCCc----ccccccEEEEccCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI---ASGSLKGKVTL--------DGKETSP----SLIKRTSAYIMQED 105 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~---~~~~~~G~I~~--------~g~~~~~----~~~~~~i~yv~Q~~ 105 (646)
+.+++|+|||||||||+.++|++.+ .++. |++.. +|.+++. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~--g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDS--GAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH--HHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC--cceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865 3444 77766 6665542 23456688888764
No 207
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=3.2e-05 Score=72.52 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999763
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=9.9e-05 Score=76.19 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=26.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346889999999999999999999999865
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.48 E-value=8.2e-05 Score=87.26 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=28.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+.+++|+.+.|.||||+|||||+++|+|...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999999999864
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=1.4e-05 Score=84.31 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=42.8
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
+.+++++++.+++|.+++|+|++|+|||||++.|++...+.. |+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~--~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG--LKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEeec
Confidence 468899999999999999999999999999999999876543 666655443
No 211
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.44 E-value=6.4e-05 Score=71.00 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.40 E-value=2.7e-05 Score=77.33 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcHHHHhhcCe
Q 039035 163 SGGERRRVSIGVDIIHGPPLLFLDEPTS-GLDSTSAYSVIEKVHNIARSGSTVILTIHQPSSRIQLLLDH 231 (646)
Q Consensus 163 SgGerqRv~ia~~L~~~P~lllLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~~i~~~~D~ 231 (646)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.--+.+.+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655543 33578899999999966 68777665555555444333346666644334445555553
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.39 E-value=0.00026 Score=68.07 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999755
No 214
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=0.00016 Score=75.19 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.7
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 177 IHGPPLLFLDEPTS-GLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 177 ~~~P~lllLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
..+|++|++||+-. .-+......+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35799999999865 33447788899999888877888888887654
No 215
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.36 E-value=2.5e-05 Score=82.77 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=31.5
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.35 E-value=3.6e-05 Score=86.34 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=41.2
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
..+++++++.+ +|+.++|+||||+|||||+++|++...+.. |.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKF--VRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEE--EEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCe--EEEEeccc
Confidence 34678888888 899999999999999999999999886654 88877764
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.33 E-value=0.00071 Score=71.61 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=28.8
Q ss_pred ccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 38 LLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 38 iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455543 46899999999999999999999887753
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.32 E-value=7.2e-06 Score=87.22 Aligned_cols=57 Identities=26% Similarity=0.255 Sum_probs=33.6
Q ss_pred eEEEEeEEEEEeccccccccccccccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 11 GLGFSNLTYTVTKKKKIEGTWLKEEVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 11 ~l~~~~ls~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
.+.++||+..+. ++.+++++++.| +|+|++|+|||||++.|.|...... |.+..++.
T Consensus 17 ~v~~~~l~~~~~------------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~--~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVH------------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE--RVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHH------------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------------
T ss_pred eEEeccchHHhC------------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCC--CcccCCCc
Confidence 566666655442 345788999887 9999999999999999988754432 44444443
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.30 E-value=7.4e-05 Score=74.14 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.8
Q ss_pred cccceeEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEE
Q 039035 38 LLNKITGDAP---KGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTL 84 (646)
Q Consensus 38 iL~~vs~~i~---~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~ 84 (646)
=|.++|+++. +|.+++|.||+||||||+++.|+..+.. . +++..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~--~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-D--YDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-T--SCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-C--CCcee
Confidence 4677788777 9999999999999999999999998765 3 55544
No 220
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.30 E-value=0.0002 Score=77.97 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=31.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------C----CcceeEEEECCeeC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIA------S----GSLKGKVTLDGKET 89 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~------~----~~~~G~I~~~g~~~ 89 (646)
-++|+|+||+|||||+|.|+|... + +..+|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 689999999999999999999753 1 12358999999754
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=6.2e-05 Score=79.61 Aligned_cols=41 Identities=24% Similarity=0.428 Sum_probs=34.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKET 89 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~ 89 (646)
+++.+++|+|++|||||||+|.|+|...+.. |+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~--~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERG--HKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcC--CeEEEEeecC
Confidence 4588999999999999999999999876654 7777766544
No 222
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.22 E-value=0.00063 Score=74.21 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=30.5
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
..-|+.+.+-+++|+++.|.|++|+|||||.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 445777777799999999999999999999877665
No 223
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=7.9e-05 Score=70.43 Aligned_cols=38 Identities=39% Similarity=0.589 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee--EEEECCe
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG--KVTLDGK 87 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~g~ 87 (646)
++|++++|.|++||||||+.+.|++.+.+ . | .|.++|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~--g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-H--GIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-C--CCcEEEECCh
Confidence 47999999999999999999999997644 2 4 5555543
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.20 E-value=0.00021 Score=69.47 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=25.9
Q ss_pred ccceeEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 039035 39 LNKITGDAPKGCITAVMGPSGAGKSTLLDGLA 70 (646)
Q Consensus 39 L~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 70 (646)
+.+.++.+.+| +++|.|||||||||++++|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556677776 99999999999999999986
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.00099 Score=69.24 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.6
Q ss_pred ccccee-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 38 LLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 38 iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 6799999999999999999999988775
No 226
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.20 E-value=0.0017 Score=64.18 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=29.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCCEEEEEecC
Q 039035 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIAR--SGSTVILTIHQ 220 (646)
Q Consensus 178 ~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~--~g~tii~~~H~ 220 (646)
.+|+++++..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 37899999999888888665555544443332 13588888884
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.14 E-value=0.00044 Score=64.73 Aligned_cols=27 Identities=44% Similarity=0.682 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00021 Score=69.98 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=31.6
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEecCCc
Q 039035 178 HGPPLLFLDEPTSGL-DSTSAYSVIEKVHNIARSGST-VILTIHQPS 222 (646)
Q Consensus 178 ~~P~lllLDEPtsgL-D~~~~~~i~~~l~~l~~~g~t-ii~~~H~~~ 222 (646)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965422 233477788888888776665 788777543
No 229
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.11 E-value=0.00069 Score=66.85 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHhhcCeEEEEe
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIH---------QPSSRIQLLLDHLIILA 236 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 236 (646)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 553 356667777778999999999 56677888999999875
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.00072 Score=68.59 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999864
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.04 E-value=0.00012 Score=71.41 Aligned_cols=42 Identities=29% Similarity=0.323 Sum_probs=34.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCccee--EEEECCe
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKG--KVTLDGK 87 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G--~I~~~g~ 87 (646)
..+++|.+++|.|++||||||+.+.|++.+.+.. | .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~--g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDR--RVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcccc--CCcEEEECCh
Confidence 4467899999999999999999999999876443 6 7777653
No 232
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.00 E-value=0.0002 Score=68.80 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.9
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458999999988886 689999999999999999874
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.98 E-value=0.00049 Score=65.50 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=20.9
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.+++++++..++. -++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999974
No 234
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.91 E-value=0.0024 Score=79.54 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999988754
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.90 E-value=0.0004 Score=67.13 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=26.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
...+|.+++|+||||||||||.+.|+...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998663
No 236
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.87 E-value=0.00028 Score=76.32 Aligned_cols=47 Identities=19% Similarity=0.115 Sum_probs=40.1
Q ss_pred cceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCeeCC
Q 039035 40 NKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKETS 90 (646)
Q Consensus 40 ~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~~~ 90 (646)
+++++. +|++++++|+||+||||++..|++.+.+.. |+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeecccc
Confidence 567777 899999999999999999999999987655 88888776543
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.85 E-value=0.0005 Score=65.33 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.5
Q ss_pred ceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 41 KITGDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 41 ~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999975
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.00072 Score=71.21 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998765
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.77 E-value=0.0059 Score=64.41 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999754
No 240
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.76 E-value=0.0016 Score=60.30 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.00045 Score=65.58 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
...+|.++.|+|++||||||+.+.|++.+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3457999999999999999999999987754
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.67 E-value=0.00024 Score=73.30 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=37.1
Q ss_pred cc-eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCee
Q 039035 40 NK-ITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGKE 88 (646)
Q Consensus 40 ~~-vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~~ 88 (646)
++ +++..+ |++++++|++|+||||++..|++...+.. |+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 45 777766 99999999999999999999999876543 677765544
No 243
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.66 E-value=0.013 Score=64.65 Aligned_cols=36 Identities=28% Similarity=0.124 Sum_probs=29.9
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
..-|+.+.+-+++|+++.|.|++|+|||||+--++-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 345666666799999999999999999999876664
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.66 E-value=0.00027 Score=74.32 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=34.2
Q ss_pred ccccceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 039035 37 DLLNKITGDAPKGCI--TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999999865
No 245
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.64 E-value=0.00088 Score=71.23 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.8
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLA 70 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 70 (646)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346778888886 99999999999999999986
No 246
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.64 E-value=0.00076 Score=64.87 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 039035 51 ITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G 71 (646)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.62 E-value=0.0054 Score=60.98 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++..-+.|.||+|+|||||.++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.61 E-value=0.00094 Score=71.44 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcC-----------CCCCcceeEEEECCe
Q 039035 42 ITGDAPKGCITAVMGPSGAGKSTLLDGLAGR-----------IASGSLKGKVTLDGK 87 (646)
Q Consensus 42 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~-----------~~~~~~~G~I~~~g~ 87 (646)
+-+.+..|..++|+|+||+|||||+|+|+|. ..|. .|.|.+.|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~--~g~v~v~~~ 69 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN--ESRVPVPDE 69 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCS--EEEEECCCH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce--eEEEEECCc
Confidence 3446678889999999999999999999997 2333 388887764
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.00062 Score=68.31 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=35.6
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECCe
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDGK 87 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g~ 87 (646)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.. |.+.+++.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~----~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG----NIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT----CCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcCC----CcEEEecH
Confidence 555555 6778899999999999999999999987642 45666663
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.0058 Score=64.77 Aligned_cols=34 Identities=35% Similarity=0.605 Sum_probs=27.7
Q ss_pred ccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 38 LLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 38 iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 455443 3789999999999999999999877664
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.54 E-value=0.0021 Score=66.61 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=29.9
Q ss_pred HhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCCcHHHHh
Q 039035 177 IHGPPLLFLDEPT-SGLDSTSAYSVIE-KVHNIARSGSTVILTIHQPSSRIQL 227 (646)
Q Consensus 177 ~~~P~lllLDEPt-sgLD~~~~~~i~~-~l~~l~~~g~tii~~~H~~~~~i~~ 227 (646)
+.++++|++||.- ..++...+..++. ++.....+++.+|+||+.+..++..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2445444444554 5555434567888888876655443
No 252
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.022 Score=59.05 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..|..-+.|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999865
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.51 E-value=0.00097 Score=63.18 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=28.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC-cceeEEEECCee
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIASG-SLKGKVTLDGKE 88 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~~~-~~~G~I~~~g~~ 88 (646)
.+++|+|+||||||||++.|.+.+.+. ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999875322 112777766543
No 254
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.43 E-value=0.0012 Score=63.36 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.0016 Score=61.35 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 256
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.00048 Score=72.12 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=35.9
Q ss_pred cccccceeEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCC
Q 039035 36 VDLLNKITGDAPKGCI--TAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~--~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4588889999999999 999999999999999999997654
No 257
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.27 E-value=0.0027 Score=62.49 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=29.4
Q ss_pred HHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEec
Q 039035 175 DIIHGPPLLFLDEPTS-GLDSTSAYSVIEKVHNIARSGSTVILTIH 219 (646)
Q Consensus 175 ~L~~~P~lllLDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~~H 219 (646)
++..+|+++++||+-. ..+........+.+..+...|..++.++|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3446899999999864 23332223334444445567889999998
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.0017 Score=64.99 Aligned_cols=34 Identities=38% Similarity=0.766 Sum_probs=24.6
Q ss_pred cccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 38 LLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 38 iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++++++..++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555666666 8899999999999999999865
No 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.26 E-value=0.0024 Score=59.77 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998663
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.26 E-value=0.0022 Score=59.44 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 261
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.21 E-value=0.01 Score=53.93 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
+..+|++||.- .|++..+..+.+.+... ..+..+|++|..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999984 68888888888877322 224667777776543
No 262
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0023 Score=63.25 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44778999999999999999999999744
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.18 E-value=0.0023 Score=60.33 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.15 E-value=0.013 Score=73.93 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=29.0
Q ss_pred cccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 37 DLLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 37 ~iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.-|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 36999999999999999999998777653
No 265
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.12 E-value=0.0044 Score=64.07 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHHc
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLL-DGLAG 71 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL-~~L~G 71 (646)
+=+++| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 568999 9999999999999995 44443
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.07 E-value=0.003 Score=62.73 Aligned_cols=25 Identities=44% Similarity=0.725 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.05 E-value=0.0033 Score=59.24 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 268
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.03 E-value=0.0095 Score=61.79 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6789999999999999999999999875
No 269
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.00 E-value=0.019 Score=71.55 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=28.8
Q ss_pred cccccee--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 37 DLLNKIT--GDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 37 ~iL~~vs--~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
.-|+.+- +-+++|+++.|.||+|+|||||.-.++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4466665 3699999999999999999999877664
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.00 E-value=0.0032 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 271
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.0034 Score=62.93 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++|+||||||||||-+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999754
No 272
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.95 E-value=0.0089 Score=57.37 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHhhcCeEEEEe
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIH---------QPSSRIQLLLDHLIILA 236 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 236 (646)
+.+++++||--- +|+. +++.++++++.|+.||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 469999999543 6543 36677888878999999999 55677889999998775
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.95 E-value=0.0035 Score=60.00 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999987654
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.84 E-value=0.0044 Score=63.42 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=29.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCcceeEEEECC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVTLDG 86 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~~~~~G~I~~~g 86 (646)
-..|.++.|.|||||||||+.+.|+..... |.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~----~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG----NVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTT----CCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEec
Confidence 356789999999999999999999875531 4566665
No 275
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.82 E-value=0.0047 Score=60.01 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.81 E-value=0.0048 Score=58.09 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.81 E-value=0.0045 Score=57.06 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 039035 51 ITAVMGPSGAGKSTLLDGL 69 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L 69 (646)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.79 E-value=0.0053 Score=58.64 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.76 E-value=0.0045 Score=58.13 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999854
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.72 E-value=0.0052 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999855
No 281
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.71 E-value=0.0059 Score=58.48 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999997653
No 282
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.63 E-value=0.026 Score=54.96 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CCcHHHHhhcCeEEEEe
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIH---------QPSSRIQLLLDHLIILA 236 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H---------~~~~~i~~~~D~v~~L~ 236 (646)
+.+++++||--- +|.. .++.++++++.|+.||++-+ .++..+.+++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999866 6543 34777888878999999999 77888889999998875
No 283
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.60 E-value=0.0067 Score=56.50 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 039035 50 CITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G 71 (646)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 284
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.56 E-value=0.0064 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=24.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998653
No 285
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.063 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998754
No 286
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.53 E-value=0.0029 Score=61.00 Aligned_cols=24 Identities=42% Similarity=0.709 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.53 E-value=0.0064 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 288
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.51 E-value=0.0066 Score=56.75 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999754
No 289
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.50 E-value=0.0068 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988653
No 290
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.48 E-value=0.043 Score=57.72 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999754
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.48 E-value=0.0058 Score=61.72 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999975
No 292
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.47 E-value=0.013 Score=55.15 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999876654
No 293
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.47 E-value=0.0072 Score=57.57 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 294
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.41 E-value=0.0075 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998654
No 295
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.40 E-value=0.019 Score=51.91 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQP 221 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 221 (646)
+..+|++||.- .|+...+..+.+.+.+-.+.+..+|++|+.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999965 6788888888888776544456777777754
No 296
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.0092 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.33 E-value=0.0078 Score=56.64 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 298
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.30 E-value=0.011 Score=60.97 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=32.4
Q ss_pred ccccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 35 EVDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 35 ~~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
....+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346788888887 7999999999999999999999874
No 299
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.29 E-value=0.012 Score=62.09 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=27.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC-----------CCCcceeEEEECC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI-----------ASGSLKGKVTLDG 86 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~-----------~~~~~~G~I~~~g 86 (646)
|-.++|+|.+|+|||||+|.|+|.. .|. .|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~--~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN--TGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCC--SSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECce--EEEEecCC
Confidence 3458999999999999999999843 222 37777766
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.29 E-value=0.0036 Score=59.46 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.0084 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 302
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.20 E-value=0.0062 Score=64.95 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 179 GPPLLFLDEPTSGLD---STSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 179 ~P~lllLDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999877774 667778888888888889999999999864
No 303
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.17 E-value=0.01 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
No 304
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.17 E-value=0.0093 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 305
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.16 E-value=0.067 Score=52.70 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=44.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC---------CcHHHHhhcCeEEEEe
Q 039035 178 HGPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ---------PSSRIQLLLDHLIILA 236 (646)
Q Consensus 178 ~~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~---------~~~~i~~~~D~v~~L~ 236 (646)
.+.+++++||----.| +.++++.+++.|+.||++-++ +...+.+++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 666666677789999999999 8888899999999875
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.011 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999853
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.12 E-value=0.012 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.08 E-value=0.0087 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998754
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.06 E-value=0.011 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999864
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.05 E-value=0.011 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998654
No 311
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.03 E-value=0.012 Score=53.86 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.02 E-value=0.012 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 313
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.02 E-value=0.011 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998754
No 314
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.00 E-value=0.011 Score=59.87 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
No 315
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.00 E-value=0.012 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.97 E-value=0.01 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.96 E-value=0.0092 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 318
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.96 E-value=0.011 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998854
No 319
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.96 E-value=0.012 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999865
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.94 E-value=0.012 Score=53.78 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 321
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.92 E-value=0.012 Score=60.74 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++| .++|+|++|+|||||+|.|.|..
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 344 88999999999999999999864
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.92 E-value=0.012 Score=57.45 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.91 E-value=0.012 Score=53.59 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 324
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.90 E-value=0.012 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.88 E-value=0.013 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
No 326
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.88 E-value=0.01 Score=55.56 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.86 E-value=0.013 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 328
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.85 E-value=0.013 Score=58.33 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
-++|+|++|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999999653
No 329
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.84 E-value=0.011 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999764
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.82 E-value=0.017 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998854
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.82 E-value=0.016 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+-+++|.|++||||||+.+.|+..+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998643
No 332
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.82 E-value=0.22 Score=53.89 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999997654
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.79 E-value=0.012 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.76 E-value=0.017 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998643
No 335
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.73 E-value=0.013 Score=54.94 Aligned_cols=23 Identities=43% Similarity=0.562 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 336
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.72 E-value=0.016 Score=55.93 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.71 E-value=0.016 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998754
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.71 E-value=0.013 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998863
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.70 E-value=0.013 Score=57.01 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 340
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.69 E-value=0.015 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.69 E-value=0.015 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999764
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.68 E-value=0.017 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999754
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.65 E-value=0.015 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999864
No 344
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.64 E-value=0.014 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 345
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.64 E-value=0.016 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.63 E-value=0.015 Score=53.76 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.62 E-value=0.019 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 348
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 349
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.61 E-value=0.019 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.59 E-value=0.016 Score=52.58 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~ 72 (646)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 351
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.59 E-value=0.016 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.53 E-value=0.019 Score=55.49 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998644
No 353
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.52 E-value=0.02 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.52 E-value=0.018 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999987643
No 355
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.50 E-value=0.03 Score=53.93 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=30.2
Q ss_pred cccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 36 VDLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 36 ~~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
...++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 45677766554 68899999999999999999998754
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.49 E-value=0.063 Score=67.85 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=31.4
Q ss_pred ccccceeE--EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 37 DLLNKITG--DAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 37 ~iL~~vs~--~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.-|+.+.+ -+++|+++.|-|++|+|||||+..++...
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34666764 79999999999999999999999888754
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.49 E-value=0.019 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998643
No 358
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.48 E-value=0.013 Score=59.87 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIASG 76 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~~~ 76 (646)
..+.|.||+|+|||||.++|++.....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 689999999999999999999976543
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.47 E-value=0.022 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++-.++|.||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999998543
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.46 E-value=0.018 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.45 E-value=0.011 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
+.--++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999875
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.44 E-value=0.018 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999754
No 363
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.44 E-value=0.02 Score=58.95 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 58999999999999999999864
No 364
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.42 E-value=0.017 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.42 E-value=0.019 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.42 E-value=0.016 Score=53.24 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 367
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.41 E-value=0.034 Score=58.05 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++.++.|+||+|||||||-..|+..+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356799999999999999999999866
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.38 E-value=0.019 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 369
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.37 E-value=0.02 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 370
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.37 E-value=0.018 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999964
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.36 E-value=0.016 Score=58.54 Aligned_cols=22 Identities=45% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998754
No 372
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.35 E-value=0.023 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.019 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 374
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.27 E-value=0.02 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998754
No 375
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.26 E-value=0.021 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34458999999999999999999754
No 376
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.24 E-value=0.021 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 377
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.24 E-value=0.021 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 378
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.24 E-value=0.017 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
No 379
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.24 E-value=0.027 Score=52.17 Aligned_cols=27 Identities=33% Similarity=0.631 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999998764
No 380
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.21 E-value=0.02 Score=60.70 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~ 72 (646)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 381
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.21 E-value=0.019 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.20 E-value=0.022 Score=53.50 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
No 383
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.19 E-value=0.09 Score=54.03 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 179 GPPLLFLDEPTSGLD-STSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 179 ~P~lllLDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
+++++++||.- .|. ......+.+.+.+.. .+..+|++++++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 67899999984 344 555566666666543 3578888887754
No 384
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.15 E-value=0.025 Score=56.33 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 385
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.13 E-value=0.023 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999998754
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.021 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998743
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.12 E-value=0.022 Score=56.81 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 388
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.12 E-value=0.024 Score=56.82 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 389
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.11 E-value=0.022 Score=56.19 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=21.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 45 DAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 45 ~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
...+|.++.|.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999998765
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.10 E-value=0.021 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
No 391
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.10 E-value=0.027 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 392
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.021 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.09 E-value=0.024 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998643
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.09 E-value=0.026 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 395
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.05 E-value=0.031 Score=54.51 Aligned_cols=28 Identities=46% Similarity=0.597 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987654
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.05 E-value=0.024 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999873
No 397
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.03 E-value=0.024 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.03 E-value=0.025 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.00 E-value=0.025 Score=55.32 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.+++..++.|+||+||||+|.-+.|+-.+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345667789999999999999999998644
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.99 E-value=0.029 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 401
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.98 E-value=0.024 Score=57.40 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|||||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 402
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.93 E-value=0.027 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 403
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.92 E-value=0.023 Score=53.94 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999999864
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.92 E-value=0.028 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
No 405
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.91 E-value=0.047 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
-++|+|++|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.89 E-value=0.026 Score=54.45 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.89 E-value=0.016 Score=59.30 Aligned_cols=26 Identities=38% Similarity=0.436 Sum_probs=19.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 408
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.88 E-value=0.014 Score=56.22 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.87 E-value=0.028 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 410
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.87 E-value=0.027 Score=54.81 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.85 E-value=0.025 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 412
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.85 E-value=0.027 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 413
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.027 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
=-++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999964
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.025 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 415
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.028 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 416
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.84 E-value=0.026 Score=57.81 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999975
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.83 E-value=0.029 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.82 E-value=0.028 Score=52.86 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
--++|+|++|+|||||++.+.+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999998854
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.81 E-value=0.029 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 420
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.80 E-value=0.028 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
-++|+|++|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999986543
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.80 E-value=0.021 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998865
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.80 E-value=0.029 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998754
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.79 E-value=0.025 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 424
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.79 E-value=0.029 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.78 E-value=0.011 Score=57.09 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877777666665432 23677888888764
No 426
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.75 E-value=0.029 Score=57.01 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 427
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.031 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.73 E-value=0.025 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 429
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.027 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988654
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.64 E-value=0.036 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.63 E-value=0.034 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 432
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.63 E-value=0.025 Score=52.22 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.62 E-value=0.04 Score=54.06 Aligned_cols=27 Identities=44% Similarity=0.724 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+..+.|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998654
No 434
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.62 E-value=0.035 Score=52.46 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.61 E-value=0.04 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
No 436
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.59 E-value=0.033 Score=51.56 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446678999999999999999998765
No 437
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.57 E-value=0.034 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999988754
No 438
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.55 E-value=0.039 Score=60.04 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=29.6
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 355555 556789999999999999999999998754
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.53 E-value=0.034 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 039035 52 TAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998643
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.50 E-value=0.037 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 46 APKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 46 i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.+.+++.|+|++||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999998643
No 441
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.47 E-value=0.03 Score=56.75 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.47 E-value=0.035 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 443
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.47 E-value=0.037 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
..++++|.+|+|||||+|.|.|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 47899999999999999999997643
No 444
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.47 E-value=0.038 Score=57.73 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999865
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.46 E-value=0.035 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 446
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.45 E-value=0.032 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 447
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.42 E-value=0.04 Score=53.86 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIAS 75 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~~ 75 (646)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987654
No 448
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.41 E-value=0.041 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 449
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.40 E-value=0.024 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.39 E-value=0.051 Score=53.20 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=28.6
Q ss_pred cccccccee-EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 039035 35 EVDLLNKIT-GDAPKGCITAVMGPSGAGKSTLLDGLA 70 (646)
Q Consensus 35 ~~~iL~~vs-~~i~~Ge~~aI~GpsGaGKSTLL~~L~ 70 (646)
+..-||.+- +=+++|+++.|.|++|+|||||.--++
T Consensus 15 Gi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 15 GIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 344566654 579999999999999999999975543
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.35 E-value=0.033 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999763
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.31 E-value=0.05 Score=53.46 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987653
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.26 E-value=0.035 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999854
No 454
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.24 E-value=0.038 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999865
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.20 E-value=0.046 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999743
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.18 E-value=0.047 Score=53.79 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
No 457
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.11 E-value=0.04 Score=55.38 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.06 E-value=0.072 Score=50.11 Aligned_cols=34 Identities=18% Similarity=0.007 Sum_probs=27.1
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAG 71 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G 71 (646)
..+|..-.. -.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455655544 4588999999999999999988875
No 459
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.06 E-value=0.049 Score=56.52 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++.|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.06 E-value=0.04 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.06 E-value=0.033 Score=55.72 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998765
No 462
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.95 E-value=0.048 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 463
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.90 E-value=0.023 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998654
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.89 E-value=0.021 Score=59.25 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCcH
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPSS 223 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~~ 223 (646)
+++++++|| ...|++.....+.+.+.+... ...+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 567999999 788999888888888776543 3456667776653
No 465
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.05 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.85 E-value=0.057 Score=52.29 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998644
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.83 E-value=0.063 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999754
No 468
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.78 E-value=0.018 Score=57.53 Aligned_cols=28 Identities=39% Similarity=0.783 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 44 GDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 44 ~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
...++| +.|.||+|+|||||.++|++..
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 344445 7799999999999999999753
No 469
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.74 E-value=0.047 Score=51.94 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998754
No 470
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.71 E-value=0.05 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988643
No 471
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.71 E-value=0.033 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
=-++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999653
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.69 E-value=0.025 Score=53.61 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
No 473
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.47 E-value=0.024 Score=66.33 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.2
Q ss_pred eeEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 42 ITGDAPKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 42 vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.++.+.+|+.+.|.||||+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778999999999999999999999998763
No 474
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.46 E-value=0.052 Score=59.07 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 039035 166 ERRRVSIGVDIIHGPPLLFLDEP-TSGLDSTSAYSVIEKVHNIARSGSTVILTIHQP 221 (646)
Q Consensus 166 erqRv~ia~~L~~~P~lllLDEP-tsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~ 221 (646)
+.+....+...+.+++++++... +.++.... ..+.+.++ +.++.+|++.+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 55666677777788887655544 44565543 34555443 4678888887764
No 475
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.46 E-value=0.06 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.44 E-value=0.054 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 039035 50 CITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 50 e~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
=-++|+|++|+|||||++.+.+..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998643
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.39 E-value=0.066 Score=57.17 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-.+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998754
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.34 E-value=0.056 Score=51.57 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998654
No 479
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.97 E-value=0.084 Score=50.02 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQ 220 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~ 220 (646)
+++++++||-=. +|+ .+++.|+.++++|..|+++.++
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEES
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeec
Confidence 578999999643 443 3667778888789999999884
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.74 E-value=0.11 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
+-.++++|.+|+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999999753
No 481
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.57 E-value=0.093 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999998765
No 482
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.51 E-value=0.095 Score=49.63 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCc
Q 039035 179 GPPLLFLDEPTSGLDSTSAYSVIEKVHNIARSGSTVILTIHQPS 222 (646)
Q Consensus 179 ~P~lllLDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~~H~~~ 222 (646)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 6789999995 456777666666666553 23566777777653
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.51 E-value=0.096 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-+||+||+||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998644
No 484
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.48 E-value=0.18 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.47 E-value=0.1 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
+..-.++|+|++|+|||||++.|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998764
No 486
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.42 E-value=0.44 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.29 E-value=0.13 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345799999999999999998876
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.22 E-value=0.091 Score=56.17 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCccccccccCCCCCCCChHHHHHHHHHHHHHhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHHcC
Q 039035 135 QRVENLVDQLGLTTTRNTHIGDEGTRGVSGGERRRVSIGVDIIHGPPLLFL---DEPTSGLDSTSAYSVIEKVHNIARSG 211 (646)
Q Consensus 135 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~P~lllL---DEPtsgLD~~~~~~i~~~l~~l~~~g 211 (646)
+.++++++.++.... ...+|.++.+++.-..-+...|-++++ |.+ + ...+.++.+.+...|
T Consensus 180 ~~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~------~~~l~~l~~~~~~~~ 243 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S------DEQIKRLVREEEKRG 243 (397)
T ss_dssp HHHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c------hHHHHHHHHHHhhcC
Confidence 346677777776432 125899998888777777779988887 444 1 122323223333346
Q ss_pred CEEEEEecCCcHHHHhhcC
Q 039035 212 STVILTIHQPSSRIQLLLD 230 (646)
Q Consensus 212 ~tii~~~H~~~~~i~~~~D 230 (646)
..+|.++=.....+.++.+
T Consensus 244 ~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 244 YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp CEEEEECHHHHHHHHSCSS
T ss_pred CcEEEEeccchhhHHHHHh
Confidence 5666555433444444333
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.20 E-value=0.11 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567899999999999999999875
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.49 E-value=0.04 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4799999999999999988753
No 491
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.06 E-value=0.071 Score=55.90 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999965
No 492
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.97 E-value=0.11 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
++...+.|.||+|+|||+|.++|+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444567888999999999999999754
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.95 E-value=0.098 Score=56.53 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.++|+|++|+|||||+|.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.90 E-value=0.14 Score=49.39 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 49 GCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 49 Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
|.+++|=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998764
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.77 E-value=0.075 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHH-HHcC
Q 039035 52 TAVMGPSGAGKSTLLDG-LAGR 72 (646)
Q Consensus 52 ~aI~GpsGaGKSTLL~~-L~G~ 72 (646)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
No 496
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.72 E-value=0.027 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 039035 51 ITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 51 ~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.71 E-value=0.14 Score=52.89 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+..-+.|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456679999999999999999998753
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.63 E-value=0.1 Score=58.61 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=26.9
Q ss_pred ccccceeEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 039035 37 DLLNKITGDAPKGCITAVMGPSGAGKSTLLDGLAGRI 73 (646)
Q Consensus 37 ~iL~~vs~~i~~Ge~~aI~GpsGaGKSTLL~~L~G~~ 73 (646)
.+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566652 334578999999999999999999964
No 499
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.62 E-value=0.099 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 039035 48 KGCITAVMGPSGAGKSTLLDGLAGR 72 (646)
Q Consensus 48 ~Ge~~aI~GpsGaGKSTLL~~L~G~ 72 (646)
.|=-++|+|++|+|||||+|.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4445999999999999999999985
No 500
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.59 E-value=0.13 Score=53.77 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 039035 47 PKGCITAVMGPSGAGKSTLLDGLAGRIA 74 (646)
Q Consensus 47 ~~Ge~~aI~GpsGaGKSTLL~~L~G~~~ 74 (646)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4577899999999999999999998664
Done!