BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039039
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 60/296 (20%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
+K RP + FL++ S L+E+ + TMG + YA K++DP K F R+++R+D +
Sbjct: 74 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 133
Query: 213 KCLDLVLGQESS-IVIVDDTESVWGGRVENLITVGSYDFFKG------------------ 253
K L + ++S +V++DD VW NLI V Y+FF G
Sbjct: 134 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGIGDINSNFLSGNREALEE 192
Query: 254 -------------KKKNDCKSYSEQMSDESES----------DGALANILRALKAVHALY 290
++ K + + DE + D L + + LK +HA+Y
Sbjct: 193 QNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVY 252
Query: 291 FDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF------GDDDFEELPLTWSRA 337
++ GNH +V + K++ ++L GC +LF G D W A
Sbjct: 253 YEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKW--A 309
Query: 338 EEMGAICTLVTDASITHVVSSNTQSETFEWA-EQENKCLVHPQWINDAYFLWCRQP 392
GA L TH++++ ++E + A N +V W+ ++ W R P
Sbjct: 310 MSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLP 365
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
+K RP + FL++ S L+E+ + TMG + YA K++DP K F R+++R+D +
Sbjct: 82 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 141
Query: 213 KCLDLVLGQESS-IVIVDDTESVWGGRVENLITVGSYDFFKG 253
K L + ++S +V++DD VW NLI V Y+FF G
Sbjct: 142 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVG 182
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 273 DGALANILRALKAVHALYFDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF--- 322
D L + + LK +HA+Y++ GNH +V + K++ ++L GC +LF
Sbjct: 305 DHELERLEKVLKDIHAVYYEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGV 363
Query: 323 ---GDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWA-EQENKCLVHP 378
G D W A GA L TH++++ ++E + A N +V
Sbjct: 364 IPLGVDVLSSDIAKW--AMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKL 421
Query: 379 QWINDAYFLWCRQP 392
W+ ++ W R P
Sbjct: 422 NWLTESLSQWKRLP 435
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 131 SSDKISRGNDLFKIKIGDNV--LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVK 188
S IS + + ++I + + V RP V FL+ +LFE + T +YA
Sbjct: 43 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 102
Query: 189 LLDPDCKYFNSRIITREDFKQKERKCLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVG 246
LLD F +R+ + DL LG+E S ++IVD++ + + EN + V
Sbjct: 103 LLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQ 161
Query: 247 S-YDFFKGKKKNDCKSYSEQMSDESE 271
S +D + D + E +S E +
Sbjct: 162 SWFDDMTDTELLDLIPFFEGLSREDD 187
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 118
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 119 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 173
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 115
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 116 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 170
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 115
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 116 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 170
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 56 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 114
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 115 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 169
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP+V FL LFE + T +YA LLD C F +R+ +
Sbjct: 59 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQGCYVK 117
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
DL LG++ +I+D++ + + EN + V S+
Sbjct: 118 DLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSW 152
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 118
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+ ++ + + +N + V S +D + +D + EQ+S
Sbjct: 119 DLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 173
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 118
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+ ++ + + +N + V S +D + +D + EQ+S
Sbjct: 119 DLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 173
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 290 YFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTD 349
YF+ H AG ++ C+A +R+ + G+D+F + + +SRA+ + V +
Sbjct: 27 YFEK---HVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDN 83
Query: 350 ASITHV------VSSNTQSETFEWAEQENKCLVHPQWINDAY 385
S T + +SE + + + P+ IN+ Y
Sbjct: 84 ESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENY 125
>pdb|2EP8|A Chain A, Solution Structure Of The Brct Domain From Human
Pescadillo Homolog 1
Length = 100
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 332 LTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDA 384
++W ++ +GA VTD+ ITH + +T +C V PQW+ D+
Sbjct: 40 VSWDKSLCIGATYD-VTDSRITHQIVDRPGQQT----SVIGRCYVQPQWVFDS 87
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RP V FL+ LFE + T +YA LD F +R+ +
Sbjct: 57 RPHVDEFLQRXGELFECVLFTASLAKYADPVADXLD-KWGAFRARLFRESCVFHRGNYVK 115
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I D++ + + +N + V S +D + +D + EQ+S
Sbjct: 116 DLSRLGRDLRRVLIXDNSPASYVFHPDNAVPVASWFDNXSDTELHDLLPFFEQLS 170
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY+ + + +
Sbjct: 146 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 205
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 206 AVSALQESDN-LRNVFNVILAV 226
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY+ + + +
Sbjct: 169 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 228
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 229 AVSALQESDN-LRNVFNVILAV 249
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY+ + + +
Sbjct: 140 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 199
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 200 AVSALQESDN-LRNVFNVILAV 220
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 287 HALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAE 338
H YF+ H AG + C+A I+ G GDD+F + W R +
Sbjct: 24 HVSYFEK---HVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQ 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,154,775
Number of Sequences: 62578
Number of extensions: 428475
Number of successful extensions: 954
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 23
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)