BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039039
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 224/365 (61%), Gaps = 15/365 (4%)
Query: 38 CQHATILNGMCVVCDKLMDDSYGVCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHLV 97
C+H MC VC + ++++ GV F YI K +R + DEISRL+ +++ L R RKL+LV
Sbjct: 68 CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126
Query: 98 LDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRP 157
LDLDHTLL++ + L +E+YL+ + + + G LF ++ ++ KLRP
Sbjct: 127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCN---VSGGSLFLLEFMQ--MMTKLRP 181
Query: 158 FVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDL 217
FV SFL+EAS +F + + TMG+R YA + KLLDP +YF R+I+R+D + K LD+
Sbjct: 182 FVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDV 241
Query: 218 VLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKK---NDCKSYSEQMSDESESDG 274
VLGQES+++I+DDTE+ W +NLI + Y FF + + KS SE SDESE DG
Sbjct: 242 VLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDG 301
Query: 275 ALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFG-----DDDFEE 329
ALA +L+ LK HAL+F+N + RDVR L ++R IL GC I+F E+
Sbjct: 302 ALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPED 361
Query: 330 LPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFLWC 389
PL W AEE+GA C DAS+THVV+ + +E WA +E K +VH WI+ A +LW
Sbjct: 362 HPL-WKMAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWM 420
Query: 390 RQPND 394
+QP +
Sbjct: 421 KQPEE 425
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 177/334 (52%), Gaps = 31/334 (9%)
Query: 75 DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDK 134
+ + RL+++N + +KL LVLD+DHTLL+S K E E+ E +K
Sbjct: 911 ERVRRLEEQN--KMFASQKLSLVLDIDHTLLNS---AKFNEVESRHEEILRKKEEQDREK 965
Query: 135 ISRGNDLFK-IKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPD 193
R LF+ + +G + KLRP + +FLE+AS+L+E+ + TMGN+ YAT KLLDP
Sbjct: 966 PYR--HLFRFLHMG---MWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPK 1020
Query: 194 CKYFNSRIITREDF--------KQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITV 245
FN R+I++ D + + K L+ V+G ESS+VI+DD+ VW NLI V
Sbjct: 1021 GVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAV 1080
Query: 246 GSYDFFKGKKKN---DCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRD 302
Y +F ++ S E DE +G LA+ L ++ +H +F + D
Sbjct: 1081 ERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEV--D 1138
Query: 303 VRSCLAKIRSRILMGCTILF------GDDDFEELPLTWSRAEEMGAICTLVTDASITHVV 356
VR+ LA + +IL GC I+F G+ PL W AE+ GA+CT D +THVV
Sbjct: 1139 VRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPL-WQTAEQFGAVCTTQVDEHVTHVV 1197
Query: 357 SSNTQSETFEWAEQENKCLVHPQWINDAYFLWCR 390
+++ ++ WA + +VHP W+ + FL+ R
Sbjct: 1198 TNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQR 1231
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 36/244 (14%)
Query: 31 VSEEHTICQHATILNGMCVVCDKLM--DDSYG--------VCFDYIEKGLRYSIDEISRL 80
V++ H C H G+C +C K + D G + + L S++E SRL
Sbjct: 92 VAKLHEPCTHEVNYGGLCAICGKNITSQDYMGYSDMARANISMTHNTGDLTVSLEEASRL 151
Query: 81 KKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGND 140
+ N K L + ++L L++DLD T++H+ T D GE+ SD + D
Sbjct: 152 ESENVKRLRQEKRLSLIVDLDQTIIHA------TVD--------PTVGEWMSDPGNVNYD 197
Query: 141 L------FKIKIGDN----VLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLL 190
+ F ++ G + +K RP + FL++ S L+E+ + TMG + YA K++
Sbjct: 198 VLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKII 257
Query: 191 DPDCKYFNSRIITREDFKQKERKCLDLVLGQESS-IVIVDDTESVWGGRVENLITVGSYD 249
DP K F R+++R+D +K L + ++S +V++DD VW NLI V Y+
Sbjct: 258 DPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYE 316
Query: 250 FFKG 253
FF G
Sbjct: 317 FFVG 320
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 273 DGALANILRALKAVHALYFDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF--- 322
D L + + LK +HA+Y++ GNH +V + K++ ++L GC +LF
Sbjct: 443 DHELERLEKVLKDIHAVYYEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGV 501
Query: 323 ---GDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWA-EQENKCLVHP 378
G D W+ + GA L TH++++ ++E + A N +V
Sbjct: 502 IPLGVDVLSSDIAKWAMS--FGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKL 559
Query: 379 QWINDAYFLWCRQP 392
W+ ++ W R P
Sbjct: 560 NWLTESLSQWKRLP 573
>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo
sapiens GN=CTDP1 PE=1 SV=3
Length = 961
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 36/232 (15%)
Query: 38 CQHATILNGMCVVCDKLM------DDSYGVCFDYIEKGLRYSIDEI-------SRLKKRN 84
C H ++ G+C C + + + V + +S+ E+ +L + +
Sbjct: 114 CSHPVVMKGLCAECGQDLTQLQSKNGKQQVPLSTATVSMVHSVPELMVSSEQAEQLGRED 173
Query: 85 TKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKI 144
+ L R RKL L++DLD TL+H+ E++ ++ + ++G F++
Sbjct: 174 QQRLHRNRKLVLMVDLDQTLIHT--------TEQHCQQMS-----------NKGIFHFQL 214
Query: 145 KIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITR 204
G+ +L +LRP + FLE+ ++L+E+ V T G+R YA LDP+ K F+ RI++R
Sbjct: 215 GRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSR 274
Query: 205 E---DFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKG 253
+ D K +L +S + I+DD E VW NLITV Y +F+G
Sbjct: 275 DECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVW-KFAPNLITVKKYVYFQG 325
>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase
OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1
SV=1
Length = 411
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 27/251 (10%)
Query: 38 CQHATILNGMCVVCD-KLMDDSYGVCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHL 96
C H L +C VC ++ ++S+ C Y ++ + +E + K + L KL L
Sbjct: 4 CNHPIRLGTLCGVCGMEIQEESHLFCALYNTDNVKITHEEAVAIHKEKMEALEMQMKLIL 63
Query: 97 VLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR 156
VLDLD T+LH+ Y + +F D+ VKLR
Sbjct: 64 VLDLDQTVLHT----------TYGTSSLEGTVKFVIDRCR--------------YCVKLR 99
Query: 157 PFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLD 216
P + L S+L+EI V TMG R YA R V+++DP KYF+ RIITR++ + K L
Sbjct: 100 PNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDENQGVLVKRLS 159
Query: 217 LVLGQES-SIVIVDDTESVWGGRVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGA 275
+ + +IVI+DD VW ENL+ + + +F ND ++ E+ + A
Sbjct: 160 RLFPHDHRNIVILDDRPDVW-DYCENLVLIRPFWYFNRVDINDPLRLKRKIEKEAGENKA 218
Query: 276 LANILRALKAV 286
L + K +
Sbjct: 219 LEEFVSKRKKI 229
>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus
musculus GN=Ctdp1 PE=1 SV=1
Length = 960
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 38 CQHATILNGMCVVCDKLMDD-------------SYGVCFDYIEKGLRYSIDEISRLKKRN 84
C H ++ G+C C + + + V + L S ++ +L + +
Sbjct: 114 CSHPVVMKGLCAECGQDLTQLQSKNGRQQVPLSTATVSMVHSVPELMVSSEQAEKLGRED 173
Query: 85 TKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKI 144
+ L R RKL L++DLD TL+H+ E++ + + ++G F++
Sbjct: 174 QQRLHRNRKLVLMVDLDQTLIHT--------TEQHCPQMS-----------NKGIFHFQL 214
Query: 145 KIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITR 204
G+ +L +LRP + FLE+ ++L+E+ V T G+R YA LDP+ K F+ RI++R
Sbjct: 215 GRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSR 274
Query: 205 E---DFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKG 253
+ D K +L +S + I+DD E VW NLITV Y +F G
Sbjct: 275 DECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVW-KFAPNLITVKKYVYFPG 325
>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=FCP1 PE=1 SV=1
Length = 732
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 38 CQHATILNGMCVVCDKLMD-DSY-GVCFDYI-EKGLRYSIDEISRLKKRNTKNLLRMRKL 94
C H + G+C C K + D++ GV D + + L+ S E R K ++L R +KL
Sbjct: 116 CNHDIVYGGLCTQCGKEVSADAFDGVPLDVVGDVDLQISETEAIRTGKALKEHLRRDKKL 175
Query: 95 HLVLDLDHTLLH-------SRW--------------IGKLTSDEKYLEKAAAAAGEFSSD 133
LV+DLD T++H + W + T DE+ + +
Sbjct: 176 ILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMNDD---- 231
Query: 134 KISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPD 193
G+ L + VK+RP ++ F + + LFE+ + TM R YA + K++DP
Sbjct: 232 ----GSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPT 287
Query: 194 CKYFNSRIITREDFKQKERKCL-DLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFK 252
+ F RI++R++ K L L +S +V++DD VW NLI V Y+FF
Sbjct: 288 GELFGDRILSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWNW-CPNLIKVVPYNFFV 346
Query: 253 G 253
G
Sbjct: 347 G 347
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 271 ESDGALANILRALKAVHALYFDN-PGNHAAGRDVRSCLAKIRSRILMGCTILF------G 323
+ D L ++ L +H Y+D + ++ + ++ ++ C +F G
Sbjct: 459 DDDDELYYLMGTLSNIHKTYYDMLSQQNEPEPNLMEIIPSLKQKVFQNCYFVFSGLIPLG 518
Query: 324 DDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCL--VHPQWI 381
D + W+ GA T D TH+++ N + A++ N + VHP WI
Sbjct: 519 TDIQRSDIVIWTST--FGATSTPDIDYLTTHLITKNPSTYKARLAKKFNPQIKIVHPDWI 576
Query: 382 NDAYFLWCR 390
+ W +
Sbjct: 577 FECLVNWKK 585
>sp|Q08BB5|CTL2A_DANRE CTD small phosphatase-like protein 2-A OS=Danio rerio GN=ctdspl2a
PE=2 SV=1
Length = 469
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 283 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 326
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 327 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRH 375
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
R+ + DL +LG++ S VI+D++ + ++ N I + S+
Sbjct: 376 RLFREHCVCVQGNYIKDLNILGRDLSKTVIIDNSPQAFAYQLSNGIPIESW 426
>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis
GN=ctdspl2-a PE=2 SV=1
Length = 466
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 280 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 323
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 324 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRH 372
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKK 256
R+ + DL +LG++ S +I+D++ + ++ N I + S+ K K+
Sbjct: 373 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDKE 431
>sp|Q3KQB6|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis
GN=ctdspl2-b PE=2 SV=1
Length = 466
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 280 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 323
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 324 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRH 372
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKK 256
R+ + DL +LG++ S +I+D++ + ++ N I + S+ K K+
Sbjct: 373 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDKE 431
>sp|Q66KM5|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis
GN=ctdspl2 PE=2 SV=1
Length = 466
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 280 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 323
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 324 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKRLVRH 372
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKK 256
R+ + DL +LG++ S +I+D++ + ++ N I + S+ K K+
Sbjct: 373 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDKE 431
>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus
GN=Ctdspl2 PE=2 SV=1
Length = 465
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 279 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 322
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 323 -----------VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH 371
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKN 257
R+ + DL +LG++ S +I+D++ + ++ N I + S+ F K N
Sbjct: 372 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKNDN 429
Query: 258 D 258
+
Sbjct: 430 E 430
>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2
PE=1 SV=2
Length = 466
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 280 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 323
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 324 -----------VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH 372
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKN 257
R+ + DL +LG++ S +I+D++ + ++ N I + S+ F K N
Sbjct: 373 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKNDN 430
Query: 258 DC 259
+
Sbjct: 431 EL 432
>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2
PE=1 SV=1
Length = 465
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 279 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 322
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 323 -----------VYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRH 371
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKN 257
R+ + DL +LG++ S +I+D++ + ++ N I + S+ F K N
Sbjct: 372 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKNDN 429
Query: 258 D 258
+
Sbjct: 430 E 430
>sp|Q5F3Z7|CTSL2_CHICK CTD small phosphatase-like protein 2 OS=Gallus gallus GN=CTDSPL2
PE=2 SV=2
Length = 466
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H LE AA D I +
Sbjct: 280 LKTRSTP------EFSLVLDLDETLVHCSL--------NELEDAALTFPVLFQDVIYQ-- 323
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 324 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPKKQLVRH 372
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKN 257
R+ + DL +LG++ S +I+D++ + ++ N I + S+ F K N
Sbjct: 373 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW--FMDKNDN 430
Query: 258 D 258
+
Sbjct: 431 E 431
>sp|A4QNX6|CTL2B_DANRE CTD small phosphatase-like protein 2-B OS=Danio rerio GN=ctdspl2b
PE=2 SV=1
Length = 460
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 80 LKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGN 139
LK R+T + LVLDLD TL+H L+ AA D I +
Sbjct: 274 LKTRSTP------EFSLVLDLDETLVHCSL--------NELDDAALTFPVLFQDVIYQ-- 317
Query: 140 DLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
+ V+LRPF R FLE S+++EI + T + YA + + +LDP +
Sbjct: 318 -----------VYVRLRPFFREFLERMSQIYEIILFTASKKVYADKLLNILDPRKQLVRH 366
Query: 200 RIITREDFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
R+ + DL +LG++ S +I+D++ + ++ N I + S+
Sbjct: 367 RLFREHCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESW 417
>sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2
OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
Length = 770
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 142 FKIKIGDNVLLVKLRPF---VRSFLEEASR-LFEISVCTMGNREYATRAVKLLDPDC--- 194
K +I D +LVKLRP +RS+L +R FE+ VCTM R+YA +LLDP+
Sbjct: 245 IKPEIRDTSVLVKLRPAWEELRSYLTAKTRKRFEVYVCTMAERDYALEMWRLLDPEAHLI 304
Query: 195 --KYFNSRII-TREDFKQKERKCLDLVLGQESSIVIVDDTESVW 235
K RI+ + D K+ + + +++DD VW
Sbjct: 305 SLKELRDRIVCVKPDAKKSLLSVFNGGICHPKMAMVIDDRMKVW 348
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 38/165 (23%)
Query: 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDN--V 150
K+ LVLDLD TL+H S++ + + + F + +
Sbjct: 390 KISLVLDLDETLVHC-----------------------STEPLEQPHLTFPVFFNNTEYQ 426
Query: 151 LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCK-----YFNSRIITRE 205
+ K RPF FL + S +FE+ + T YA + + ++DP+ K Y +S +
Sbjct: 427 VFAKKRPFFEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPNNKIKYRLYRDSCVYVDG 486
Query: 206 DFKQKERKCLDL-VLGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
++ + DL VLG++ +VI+D++ +G +V+N I + S+
Sbjct: 487 NYLK------DLSVLGRDLKQVVIIDNSPQSFGFQVDNGIPIESW 525
>sp|Q3B7T6|CNEP1_RAT CTD nuclear envelope phosphatase 1 OS=Rattus norvegicus GN=Ctdnep1
PE=2 SV=2
Length = 244
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S L + L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDILPLSPLSR---NRLAQVKRKILVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSR-IITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGG 237
LD NSR I+ R ++Q K L +V SSIVI+D++ +
Sbjct: 141 VADKLD------NSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q3TP92|CNEP1_MOUSE CTD nuclear envelope phosphatase 1 OS=Mus musculus GN=Ctdnep1 PE=2
SV=2
Length = 244
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S L + L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDILPLSPLSR---NRLAQVKRKILVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSR-IITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGG 237
LD NSR I+ R ++Q K L +V SSIVI+D++ +
Sbjct: 141 VADKLD------NSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q5U3T3|CNEPB_DANRE CTD nuclear envelope phosphatase 1B OS=Danio rerio GN=ctdnep1b PE=2
SV=1
Length = 245
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 62/251 (24%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S + + N+ RK+ LVLDLD TL+HS G L +
Sbjct: 40 QTVRYDILSLSPISRNRLNNV--KRKI-LVLDLDETLIHSHHDGVLRPTVR-----PGTP 91
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 92 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 141
Query: 186 AVKLLDPDCKYFNSRIITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGGR 238
LD N I+ R ++Q K L +V SS+VI+D++ +
Sbjct: 142 VADKLDN-----NKAILKRRYYRQHCTLDSGSYIKDLSVVHDDLSSVVILDNSPGAYRSH 196
Query: 239 VENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHA 298
+N I + S+ SD SD AL N+L L A+ P
Sbjct: 197 PDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDALRF-----PA--- 229
Query: 299 AGRDVRSCLAK 309
DVRS L++
Sbjct: 230 ---DVRSVLSR 237
>sp|Q5U395|CNEPA_DANRE CTD nuclear envelope phosphatase 1A OS=Danio rerio GN=ctdnep1a PE=2
SV=1
Length = 245
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 106/252 (42%), Gaps = 64/252 (25%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S + RN N ++ RK+ LVLDLD TL+HS G L +
Sbjct: 40 QTVRYDILPLSPIS-RNRLNAVK-RKI-LVLDLDETLIHSHHDGVLRPTVR-----PGTP 91
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 92 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 141
Query: 186 AVKLLDPDCKYFNSR-IITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGG 237
LD N+R I+ R ++Q K L +V SSIVI+D++ +
Sbjct: 142 VADKLD------NNRGILKRRYYRQHCTLDLGSYIKDLSVVHSDLSSIVILDNSPGAYRS 195
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNH 297
+N I + S+ SD SD AL N+L L AL F +
Sbjct: 196 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLD---ALRFTS---- 229
Query: 298 AAGRDVRSCLAK 309
DVRS L++
Sbjct: 230 ----DVRSVLSR 237
>sp|O95476|CNEP1_HUMAN CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1
SV=2
Length = 244
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S + + L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDILPLSPVSR---NRLAQVKRKILVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSR-IITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGG 237
LD NSR I+ R ++Q K L +V SSIVI+D++ +
Sbjct: 141 VADKLD------NSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q1RMV9|CNEP1_BOVIN CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2
SV=1
Length = 244
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY I +S + + L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDILPLSPVSR---NRLSQVKRKILVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSR-IITREDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGG 237
LD NSR I+ R ++Q K L +V SSIVI+D++ +
Sbjct: 141 VADKLD------NSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 45.1 bits (105), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 32/159 (20%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD---NVLL 152
L+LDLD TL+HS + KYL A +F + ++I D NV +
Sbjct: 260 LILDLDETLVHSSF--------KYLRSA-----DF----------VLSVEIDDQVHNVYV 296
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRE---DFKQ 209
+K RP V FLE +LFE+ V T Y + +LD D K + R+ RE +++
Sbjct: 297 IK-RPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTD-KVIHHRLF-REACYNYEG 353
Query: 210 KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSY 248
K L + S I+I+D++ + + ++ I + S+
Sbjct: 354 NYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSW 392
>sp|Q5YDB6|CPL1_ARATH RNA polymerase II C-terminal domain phosphatase-like 1
OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
Length = 967
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 146 IGDNVLLVKLRPF---VRSFLEEASR-LFEISVCTMGNREYATRAVKLLDPDCKYFNS 199
I D +LV++RP +RS+L R FE+ VCTM R+YA +LLDP+ N+
Sbjct: 266 IRDTSVLVRMRPSWEELRSYLTAKGRKRFEVYVCTMAERDYALEMWRLLDPEGNLINT 323
>sp|Q07949|PSR2_YEAST Probable phosphatase PSR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSR2 PE=1 SV=1
Length = 397
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 27/101 (26%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD---NVLL 152
L+LDLD TL+HS + KY+ A +F + ++I D NV +
Sbjct: 230 LILDLDETLVHSSF--------KYMHSA-----DF----------VLPVEIDDQVHNVYV 266
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPD 193
+K RP V FL S+L+E+ V T YA + LDP+
Sbjct: 267 IK-RPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPN 306
>sp|Q28HW9|CNEP1_XENTR CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1
PE=2 SV=1
Length = 244
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 94/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY + +S RN L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDVLPLSP-ASRN--RLSQVKRKVLVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSRIITREDFKQKE--------RKCLDLVLGQESSIVIVDDTESVWGG 237
LD N+R + R F ++ K L +V SS+VI+D++ +
Sbjct: 141 VADKLD------NNRGVLRRRFYRQHCTLELGSYIKDLSVVHSDLSSVVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q20432|CNEP1_CAEEL CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
elegans GN=scpl-2 PE=3 SV=1
Length = 246
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 66/172 (38%), Gaps = 25/172 (14%)
Query: 84 NTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFK 143
T LL +++ LVLDLD TL+HS G L + G S I D
Sbjct: 48 TTHRLLTVKRKILVLDLDETLIHSHHDGVL--------RQTVKPGTPSDFTIRVVIDRHP 99
Query: 144 IKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIIT 203
+K V RP V FL S+ +E+ V T Y T LD I+
Sbjct: 100 VKFS-----VHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDR-----GRGILK 149
Query: 204 REDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSY 248
R F+Q K L + SSI I+D++ + N I + S+
Sbjct: 150 RRYFRQHCTMEVGGYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIPIPSW 201
>sp|Q9N4V4|SCPL3_CAEEL CTD small phosphatase-like protein 3 OS=Caenorhabditis elegans
GN=scpl-3 PE=3 SV=1
Length = 287
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV---LL 152
LVLDLD TL+H S + +F + + N+ +
Sbjct: 67 LVLDLDETLVHC-----------------------SLTPLDNATMVFPV-VFQNITYQVY 102
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
V+LRP +R+FL ++ FEI + T + YA + +LDP + R+
Sbjct: 103 VRLRPHLRTFLSRMAKTFEIIIFTASKKVYANKLCDILDPRKNHIRHRLFREHCVCVFGN 162
Query: 213 KCLDL-VLGQESS-IVIVDDTESVWGGRVENLITVGSY 248
DL +LG++ S +I+D+ + +++N I + S+
Sbjct: 163 YVKDLTILGRDPSKTMILDNAVQSFAYQLDNGIPIESW 200
>sp|Q8JIL9|CNEP1_XENLA CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1
PE=1 SV=1
Length = 244
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 94/229 (41%), Gaps = 53/229 (23%)
Query: 68 KGLRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
+ +RY + +S RN L ++++ LVLDLD TL+HS G L +
Sbjct: 39 QTVRYDVLPLSP-ASRN--RLSQVKRKVLVLDLDETLIHSHHDGVLRPTVR-----PGTP 90
Query: 128 GEFSSDKISRGNDLFKIKIGDNVL--LVKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
+F + K+ I + + V RP V FLE S+ +E+ V T Y +
Sbjct: 91 PDF----------ILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSA 140
Query: 186 AVKLLDPDCKYFNSRIITREDFKQKE--------RKCLDLVLGQESSIVIVDDTESVWGG 237
LD N++ + R F ++ K L +V SS+VI+D++ +
Sbjct: 141 VADKLD------NNKGVLRRRFYRQHCTLELGSYIKDLSVVHSDLSSVVILDNSPGAYRS 194
Query: 238 RVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286
+N I + S+ SD SD AL N+L L A+
Sbjct: 195 HPDNAIPIKSW-----------------FSD--PSDTALLNLLPMLDAL 224
>sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2
SV=2
Length = 275
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV--LLV 153
+V+DLD TL+HS + IS + + ++I + + V
Sbjct: 108 VVIDLDETLVHSSF-----------------------KPISNADFIVPVEIDGTIHQVYV 144
Query: 154 KLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERK 213
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 145 LKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNY 203
Query: 214 CLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMSDES 270
DL LG+E S ++IVD++ + + EN + V S +D + D + E +S E
Sbjct: 204 VKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSKEE 263
Query: 271 E 271
E
Sbjct: 264 E 264
>sp|Q61C05|CNEP1_CAEBR CTD nuclear envelope phosphatase 1 homolog OS=Caenorhabditis
briggsae GN=scpl-2 PE=3 SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 66/172 (38%), Gaps = 25/172 (14%)
Query: 84 NTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFK 143
T LL +++ LVLDLD TL+HS G L + G S I D
Sbjct: 48 TTHRLLTVKRKILVLDLDETLIHSHHDGVL--------RQTVKPGTPSDFTIRVVIDRHP 99
Query: 144 IKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIIT 203
+K V RP V FL S+ +E+ V T Y + LD I+
Sbjct: 100 VKFS-----VHERPHVDYFLTVVSQWYELVVFTASMEVYGSSVADKLDR-----GRGILK 149
Query: 204 REDFKQK-------ERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSY 248
R F+Q K L + SSI I+D++ + N I + S+
Sbjct: 150 RRYFRQHCTMEVGGYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIPIPSW 201
>sp|P58465|CTDSL_MOUSE CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2
SV=3
Length = 276
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV--LLV 153
+V+DLD TL+HS S IS + + ++I + + V
Sbjct: 109 VVIDLDETLVHS-----------------------SFKPISNADFIVPVEIDGTIHQVYV 145
Query: 154 KLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERK 213
RP V FL+ +LFE + T +YA LLD F +R+ +
Sbjct: 146 LKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNY 204
Query: 214 CLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGSY-------------DFFKGKKKND 258
DL LG+E S ++IVD++ + + EN + V S+ FF+G + D
Sbjct: 205 VKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSRED 264
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKL 155
LVLDLD TL+HS + K + ++ V +VK
Sbjct: 139 LVLDLDETLVHSSF--KPVHNPDFIVPVEIEGTIHQ------------------VYVVK- 177
Query: 156 RPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCL 215
RPFV FL + FEI V T +YA + LD + + R+ K
Sbjct: 178 RPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLD-TGRVIHYRLFRESCHNHKGNYVK 236
Query: 216 DLV-LGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
DL LG++ S +IVD++ S + EN I + S+
Sbjct: 237 DLSRLGRDLKSTIIVDNSPSSYLFHPENAIPIDSW 271
>sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1
SV=2
Length = 276
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV--LLV 153
+V+DLD TL+HS S IS + + ++I + + V
Sbjct: 109 VVIDLDETLVHS-----------------------SFKPISNADFIVPVEIDGTIHQVYV 145
Query: 154 KLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERK 213
RP V FL+ +LFE + T +YA LLD F +R+ +
Sbjct: 146 LKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNY 204
Query: 214 CLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
DL LG+E S ++IVD++ + + EN + V S+
Sbjct: 205 VKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSW 241
>sp|Q6GZT9|037R_FRG3G uncharacterized protein 037R OS=Frog virus 3 (isolate Goorha)
GN=FV3-037R PE=4 SV=1
Length = 209
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 94 LHLVLDLDHTLLHSRWIGKL--TSDEKYLEKAAAA--AGEF------SSDKISRGN---- 139
+ + LDLD TL+HS + +L T + Y K AG SS ++ G
Sbjct: 1 MQVFLDLDETLIHSIPVSRLGWTKSKPYPVKPFTVQDAGTPLSVMMGSSKAVNDGRKRLA 60
Query: 140 ---DLFKIKI-GDNVLLVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194
LFK + D+++ RP +R+FL + ++I+V T ++ YA VK L+
Sbjct: 61 TRLSLFKRTVLTDHIMC--WRPTLRTFLNGLFASGYKINVWTAASKPYALEVVKALNLKS 118
Query: 195 KYFNSRIITREDFKQKERKCLDLVLGQE------SSIVIVDDTESV 234
Y ++T +D+ + K L + G + S+ IVDD E V
Sbjct: 119 -YGMGLLVTAQDYPKGSVKRLKYLTGLDAVKIPLSNTAIVDDREEV 163
>sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nem1 PE=3 SV=1
Length = 476
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 53/225 (23%)
Query: 78 SRLKKRN--------TKNLL--RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAA 127
SRL+ RN + LL ++ + LVLDLD TL+HS G T+ + +E
Sbjct: 278 SRLRIRNITLCADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQPIEVHVP-- 335
Query: 128 GEFSSDKISRGNDLFKIKIGDNVLL--VKLRPFVRSFLEEASRLFEISVCTMGNREYATR 185
G++ +L + RP + FL S+ F + + T + YA
Sbjct: 336 -------------------GEHPILYYIHKRPHLDYFLSNVSQWFRLILFTASVQPYADP 376
Query: 186 AVKLLDPDCKYFNSRIITREDFKQKERKCLDLVL--GQESSIVIVDDTESVWGGRVENLI 243
+ L+ D K F R + D+ + S I+I+D++ + + EN I
Sbjct: 377 IIDYLERDKKIFAKRYYRQHCALVDSSFVKDISICNIHLSRIMIIDNSPASYNAHKENAI 436
Query: 244 TVGSYDFFKGKKKNDCKSYSEQMSDESESDGA-LANILRALKAVH 287
+ + +SD S+ D L + L AL+ VH
Sbjct: 437 PIEGW-----------------ISDPSDVDLLNLLSFLHALQYVH 464
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVL 151
+K ++LDLD+TL+ + + + D+K L + A +F + ++ D+F+
Sbjct: 5 KKKLILLDLDNTLICAEDLDTV-KDKKRL---SQAQKQFRTVRMEDYYDIFE-------- 52
Query: 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVK--LLDPDCKYFNSRII------- 202
RP ++ FL+ + F++ V T +++YA +K + P K R I
Sbjct: 53 ----RPHLQEFLDYLFKNFKVGVWTASSKDYAIFVIKNFITAPQNKVKPDRKIEIFLCSH 108
Query: 203 ----TREDFKQKERKCLDLVLGQ-----ESSIVIVDDTESVWGGRVENLITVGSYDFFKG 253
+++ FK K L LV Q S + +VDD E + + EN+I V + + +
Sbjct: 109 HCNVSKKYFKGIS-KDLKLVTDQWKIIDLSQVKLVDDLEKLANHQPENVIHVKPFFYDEP 167
Query: 254 KKKNDCKSYSEQMSDES 270
KND + Q + E+
Sbjct: 168 NSKNDTELLKVQKTLET 184
>sp|Q91FG9|VF355_IIV6 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 6 GN=IIV6-355R PE=3 SV=1
Length = 182
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 95 HLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVK 154
++ LDLD+TL+ + +T ++ E+A+ F K ++ L+
Sbjct: 3 NIFLDLDNTLICAEPFEDITDLGRFKERASH----------------FDFKNMEDYYLIC 46
Query: 155 LRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLL----DPDCKY------FNSRIITR 204
RP+++ FL+ + F + + T ++ YA+ ++ DP K + R+ R
Sbjct: 47 GRPYLQPFLDYLFKNFNVHIWTAASKGYASFIIEEFILKKDPSRKINLVLFDHHCRVSKR 106
Query: 205 EDFKQKERKCLDLVLG-------QESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKN 257
K+K K L+++ + + I+DD E V +V+N +V + F + +
Sbjct: 107 VYKKEKASKKLEMLWTIWKLQEFDKENTFIIDDLEEVKESQVKNCFSVKPFFFMENDSEY 166
Query: 258 D 258
D
Sbjct: 167 D 167
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 27/99 (27%)
Query: 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG---DNVLL 152
L+LDLD TL+HS + KY+E A + + I+I +V +
Sbjct: 160 LILDLDETLVHSSF--------KYIEPA---------------DFVVSIEIDGLQHDVRV 196
Query: 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLD 191
VK RP V FL++ +FEI V T +YA + +LD
Sbjct: 197 VK-RPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLD 234
>sp|P58466|CTDS1_MOUSE Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1
Length = 261
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 29/180 (16%)
Query: 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV-- 150
K+ +V+DLD TL+HS S ++ + + ++I V
Sbjct: 90 KICVVIDLDETLVHS-----------------------SFKPVNNADFIIPVEIDGVVHQ 126
Query: 151 LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQK 210
+ V RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 127 VYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHR 185
Query: 211 ERKCLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 186 GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 245
>sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1
Length = 261
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 29/180 (16%)
Query: 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV-- 150
K+ +V+DLD TL+HS S ++ + + ++I V
Sbjct: 90 KICVVIDLDETLVHS-----------------------SFKPVNNADFIIPVEIDGVVHQ 126
Query: 151 LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQK 210
+ V RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 127 VYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHR 185
Query: 211 ERKCLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGS-YDFFKGKKKNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S +D + +D + EQ+S
Sbjct: 186 GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 245
>sp|Q2FLD9|CARB_METHJ Carbamoyl-phosphate synthase large chain OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=carB PE=3 SV=1
Length = 1056
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 36 TICQHATILNGMCVVCDKLMDDSYGVCFDYIEKGLRYS-IDEISRLKK---RNTKNLLRM 91
T +H T+L+ + ++ + D+ +G FD + +G+ + I EI+R+ +N++ M
Sbjct: 399 TDVEHHTVLSELKMILSRPTDERFGALFDALRQGMTLNEIAEITRITPFWLEKIQNIVEM 458
Query: 92 RKLHLVLDLDHTLLHSRWIG 111
K D T+L ++ G
Sbjct: 459 EKALTAHPDDATILKAKEFG 478
>sp|P38757|NEM1_YEAST Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NEM1 PE=1 SV=1
Length = 446
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 41/174 (23%)
Query: 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG---- 147
+K LV+DLD TL+HS A+ + S+G+ L ++K G
Sbjct: 250 KKKKLVIDLDETLIHS------------------ASRSTTHSNSSQGH-LVEVKFGLSGI 290
Query: 148 DNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLD---PDC---KYFNSRI 201
+ + RP+ FL + S+ +++ + T +EYA + L+ P +Y+ S
Sbjct: 291 RTLYFIHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDC 350
Query: 202 ITREDFKQKERKCLDLVLGQESS----------IVIVDDTESVWGGRVENLITV 245
+ R+ K L +V E + ++I+D++ + V+N I V
Sbjct: 351 VLRDGVGY--IKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQV 402
>sp|O14595|CTDS2_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small
phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2
Length = 271
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV-- 150
++ +V+DLD TL+HS S I+ + + I+I
Sbjct: 101 RICVVIDLDETLVHS-----------------------SFKPINNADFIVPIEIEGTTHQ 137
Query: 151 LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQK 210
+ V RP+V FL LFE + T +YA LLD C F +R+ +
Sbjct: 138 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLFRESCVFHQ 196
Query: 211 ERKCLDLV-LGQE-SSIVIVDDTESVWGGRVENLITVGSY 248
DL LG++ +I+D++ + + EN + V S+
Sbjct: 197 GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSW 236
>sp|Q9H8V3|ECT2_HUMAN Protein ECT2 OS=Homo sapiens GN=ECT2 PE=1 SV=4
Length = 914
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 328 EELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFL 387
EEL + MG + ++ +TH+V++ TQ E F A ++ P+WI Y
Sbjct: 190 EELVRLVTLVHHMGGVIRKDFNSKVTHLVANCTQGEKFRVAVSLGTPIMKPEWI---YKA 246
Query: 388 WCRQPNDVSFF 398
W R+ N+ F+
Sbjct: 247 WERR-NEQDFY 256
>sp|Q7VF36|GCP_HELHP Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=gcp PE=3 SV=1
Length = 358
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 21 SLPLRLPLLSVSEEHTICQHATILNGMCVVCDKLMDDSYGVCFDYIEK--GLRY 72
SLP L +L VS HT H N + ++ L DDS+G FD + K GL Y
Sbjct: 137 SLPQPLGILLVSGGHTQILHMRDFNAISLIAQSL-DDSFGESFDKVAKYLGLGY 189
>sp|Q07139|ECT2_MOUSE Protein ECT2 OS=Mus musculus GN=Ect2 PE=1 SV=2
Length = 913
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 328 EELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFL 387
EEL + MG + ++ +TH+V++ TQ E F A ++ P+WI Y
Sbjct: 190 EELVKLVTLVHHMGGVIRKECNSKVTHLVANCTQGEKFRVAVSLGTPIMKPEWI---YKA 246
Query: 388 WCRQ 391
W R+
Sbjct: 247 WERR 250
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 36 TICQHATILNGMCVVCDKLMDDSYGVCFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKL 94
T+ + ++ G C + ++D +Y CF+ IEKG+ +++ S++ +L R+ K+
Sbjct: 610 TVATYGALITGWCNI--GMIDKAYATCFEMIEKGITLNVNICSKI----ANSLFRLDKI 662
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,215,983
Number of Sequences: 539616
Number of extensions: 6145463
Number of successful extensions: 14702
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 14617
Number of HSP's gapped (non-prelim): 81
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)