Query 039039
Match_columns 398
No_of_seqs 319 out of 1497
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2.1E-65 4.5E-70 530.2 15.3 355 35-397 87-529 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 1.4E-37 3E-42 276.5 12.9 155 88-251 1-156 (156)
3 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.7E-33 3.7E-38 252.0 15.5 154 93-288 1-159 (162)
4 KOG1605 TFIIF-interacting CTD 100.0 2.7E-34 5.9E-39 272.3 9.8 174 86-310 82-259 (262)
5 PF03031 NIF: NLI interacting 100.0 4.4E-32 9.6E-37 241.2 15.1 150 94-288 1-154 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 100.0 5.6E-29 1.2E-33 227.9 14.5 159 87-309 15-190 (195)
7 smart00577 CPDc catalytic doma 99.9 5.8E-24 1.3E-28 187.4 14.0 142 92-252 1-145 (148)
8 KOG2832 TFIIF-interacting CTD 99.9 1.9E-24 4.2E-29 209.0 10.2 157 90-312 186-345 (393)
9 COG5190 FCP1 TFIIF-interacting 99.9 3.3E-22 7.2E-27 198.6 8.2 296 70-396 3-358 (390)
10 COG5190 FCP1 TFIIF-interacting 99.8 1.1E-19 2.5E-24 180.6 6.4 170 89-309 208-380 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.6 4.9E-15 1.1E-19 111.6 5.6 63 318-380 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.5 5.9E-14 1.3E-18 109.0 7.8 75 311-385 2-78 (78)
13 KOG3226 DNA repair protein [Re 99.4 2E-13 4.4E-18 132.3 4.3 89 310-398 313-401 (508)
14 smart00292 BRCT breast cancer 99.3 4.7E-12 1E-16 97.2 7.6 76 313-388 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.3 1.2E-11 2.5E-16 92.9 7.8 69 317-385 1-71 (72)
16 PLN03122 Poly [ADP-ribose] pol 98.8 7E-09 1.5E-13 112.7 7.9 88 310-398 185-277 (815)
17 PLN03123 poly [ADP-ribose] pol 98.7 1.7E-08 3.7E-13 111.8 7.6 88 310-397 389-479 (981)
18 TIGR01681 HAD-SF-IIIC HAD-supe 98.3 4.4E-07 9.6E-12 77.9 3.9 80 154-234 29-120 (128)
19 PLN03243 haloacid dehalogenase 98.3 1.9E-06 4.1E-11 83.0 7.4 92 152-245 107-205 (260)
20 TIGR01454 AHBA_synth_RP 3-amin 98.3 4.2E-07 9E-12 83.7 2.7 93 152-246 73-172 (205)
21 PRK13288 pyrophosphatase PpaX; 98.3 9.2E-07 2E-11 82.0 4.6 92 152-245 80-178 (214)
22 TIGR01685 MDP-1 magnesium-depe 98.2 2.4E-06 5.2E-11 77.4 6.9 96 150-246 41-154 (174)
23 PRK13225 phosphoglycolate phos 98.2 1.4E-06 2.9E-11 84.6 5.2 92 152-245 140-235 (273)
24 PLN02575 haloacid dehalogenase 98.2 2.3E-06 4.9E-11 86.5 5.9 91 153-245 215-312 (381)
25 PRK10725 fructose-1-P/6-phosph 98.2 2.5E-06 5.5E-11 77.1 5.2 89 153-244 87-181 (188)
26 PRK14988 GMP/IMP nucleotidase; 98.1 3.2E-06 6.9E-11 79.5 5.7 90 153-244 92-188 (224)
27 TIGR01684 viral_ppase viral ph 98.1 7.9E-06 1.7E-10 79.3 8.2 90 71-207 107-198 (301)
28 PRK13226 phosphoglycolate phos 98.1 6.8E-06 1.5E-10 77.3 7.0 92 152-245 93-191 (229)
29 PRK14350 ligA NAD-dependent DN 98.1 7.4E-06 1.6E-10 88.3 7.9 72 313-384 592-664 (669)
30 KOG1929 Nucleotide excision re 98.1 4.7E-06 1E-10 90.6 6.3 98 300-397 89-187 (811)
31 PHA03398 viral phosphatase sup 98.1 1.6E-05 3.5E-10 77.2 9.3 78 87-208 122-201 (303)
32 PRK10563 6-phosphogluconate ph 98.1 3.1E-06 6.6E-11 78.8 3.9 92 152-246 86-183 (221)
33 PRK06063 DNA polymerase III su 98.1 8.9E-06 1.9E-10 80.4 7.4 71 314-384 232-304 (313)
34 PRK11587 putative phosphatase; 98.0 8.1E-06 1.8E-10 76.0 6.0 91 152-245 81-178 (218)
35 TIGR03351 PhnX-like phosphonat 98.0 1.5E-05 3.2E-10 74.0 7.0 91 153-244 86-185 (220)
36 cd01427 HAD_like Haloacid deha 98.0 1.3E-05 2.8E-10 66.9 5.8 73 95-205 1-74 (139)
37 PRK13223 phosphoglycolate phos 98.0 9.4E-06 2E-10 78.6 5.6 90 153-244 100-196 (272)
38 TIGR01672 AphA HAD superfamily 97.9 3.1E-05 6.7E-10 73.6 8.3 136 89-244 59-206 (237)
39 COG0272 Lig NAD-dependent DNA 97.9 2.5E-05 5.4E-10 82.9 7.9 71 313-383 593-664 (667)
40 PRK13222 phosphoglycolate phos 97.9 3.3E-05 7.1E-10 71.7 7.7 90 152-243 91-187 (226)
41 COG0637 Predicted phosphatase/ 97.9 1.5E-05 3.3E-10 74.8 5.3 92 152-245 84-182 (221)
42 TIGR01549 HAD-SF-IA-v1 haloaci 97.9 4.9E-05 1.1E-09 66.4 7.8 77 152-232 62-144 (154)
43 KOG1929 Nucleotide excision re 97.9 8.6E-06 1.9E-10 88.5 3.5 96 302-397 481-576 (811)
44 PRK07956 ligA NAD-dependent DN 97.8 4.7E-05 1E-09 82.3 8.6 72 315-386 591-663 (665)
45 PRK14351 ligA NAD-dependent DN 97.8 4.3E-05 9.2E-10 82.8 8.2 74 313-386 608-683 (689)
46 PLN02940 riboflavin kinase 97.8 1.9E-05 4.2E-10 80.2 5.3 91 152-244 91-189 (382)
47 KOG3524 Predicted guanine nucl 97.8 6.3E-06 1.4E-10 86.5 1.6 79 312-395 116-194 (850)
48 PRK06195 DNA polymerase III su 97.8 4.3E-05 9.3E-10 75.5 7.4 70 313-382 219-303 (309)
49 TIGR00338 serB phosphoserine p 97.8 2.8E-05 6E-10 72.2 5.5 93 152-245 83-191 (219)
50 TIGR01662 HAD-SF-IIIA HAD-supe 97.8 2.6E-05 5.7E-10 66.7 4.9 80 153-236 24-119 (132)
51 TIGR00575 dnlj DNA ligase, NAD 97.8 4.2E-05 9E-10 82.6 7.0 68 313-380 583-651 (652)
52 TIGR01656 Histidinol-ppas hist 97.8 2.8E-05 6.1E-10 68.1 4.4 102 95-233 2-129 (147)
53 TIGR01686 FkbH FkbH-like domai 97.8 4.4E-05 9.6E-10 75.6 6.3 108 92-233 2-114 (320)
54 COG4996 Predicted phosphatase 97.7 0.00015 3.3E-09 61.9 8.2 132 95-249 2-146 (164)
55 TIGR00213 GmhB_yaeD D,D-heptos 97.7 8.3E-05 1.8E-09 67.1 6.5 88 153-244 25-145 (176)
56 PHA02530 pseT polynucleotide k 97.7 3.5E-05 7.5E-10 75.2 4.2 122 91-245 156-292 (300)
57 PHA02597 30.2 hypothetical pro 97.7 1.1E-05 2.5E-10 73.7 0.6 95 151-248 71-173 (197)
58 KOG4362 Transcriptional regula 97.7 5.5E-05 1.2E-09 80.4 5.4 80 316-398 477-562 (684)
59 KOG0966 ATP-dependent DNA liga 97.6 0.00011 2.4E-09 78.6 7.4 86 312-397 631-720 (881)
60 TIGR01261 hisB_Nterm histidino 97.6 0.00013 2.9E-09 65.2 7.0 94 152-248 27-146 (161)
61 COG5275 BRCT domain type II [G 97.6 0.00015 3.2E-09 66.6 7.0 77 307-383 149-227 (276)
62 TIGR01489 DKMTPPase-SF 2,3-dik 97.6 0.00041 8.9E-09 62.2 9.5 81 153-235 71-175 (188)
63 TIGR01664 DNA-3'-Pase DNA 3'-p 97.6 0.00021 4.6E-09 64.1 7.1 74 155-232 43-137 (166)
64 PRK08238 hypothetical protein; 97.6 0.00024 5.2E-09 74.2 8.5 87 154-247 72-166 (479)
65 PF12689 Acid_PPase: Acid Phos 97.5 0.00022 4.7E-09 64.4 7.0 121 94-234 4-136 (169)
66 PLN02919 haloacid dehalogenase 97.5 0.00019 4E-09 81.9 7.7 88 155-243 162-256 (1057)
67 PRK09552 mtnX 2-hydroxy-3-keto 97.5 0.00035 7.7E-09 65.1 8.1 84 152-235 72-173 (219)
68 PF05152 DUF705: Protein of un 97.4 0.00098 2.1E-08 64.2 10.0 79 87-208 116-195 (297)
69 PF13419 HAD_2: Haloacid dehal 97.4 0.0003 6.6E-09 61.5 6.1 83 151-235 74-163 (176)
70 PRK08942 D,D-heptose 1,7-bisph 97.4 0.00056 1.2E-08 61.9 7.5 77 153-233 28-131 (181)
71 COG0546 Gph Predicted phosphat 97.3 0.00026 5.6E-09 66.2 4.8 91 152-244 87-184 (220)
72 TIGR01533 lipo_e_P4 5'-nucleot 97.3 0.0015 3.3E-08 63.2 9.8 124 90-235 72-201 (266)
73 KOG3109 Haloacid dehalogenase- 97.3 0.00023 4.9E-09 66.0 3.9 84 153-239 99-195 (244)
74 PLN02770 haloacid dehalogenase 97.3 0.00025 5.4E-09 67.6 4.3 93 152-246 106-205 (248)
75 TIGR02253 CTE7 HAD superfamily 97.3 0.00035 7.7E-09 64.6 5.1 80 151-232 91-177 (221)
76 KOG2043 Signaling protein SWIF 97.2 0.00041 8.9E-09 76.8 6.0 78 318-398 660-738 (896)
77 TIGR01449 PGP_bact 2-phosphogl 97.2 0.00031 6.8E-09 64.5 4.0 96 152-249 83-185 (213)
78 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00063 1.4E-08 61.2 5.6 110 85-243 17-130 (170)
79 PRK11009 aphA acid phosphatase 97.2 0.002 4.4E-08 61.2 9.1 90 151-244 111-206 (237)
80 TIGR02254 YjjG/YfnB HAD superf 97.1 0.001 2.2E-08 61.5 6.0 90 152-244 95-193 (224)
81 TIGR01509 HAD-SF-IA-v3 haloaci 97.1 0.00061 1.3E-08 60.7 4.3 80 153-235 84-170 (183)
82 TIGR01428 HAD_type_II 2-haloal 97.0 0.00049 1.1E-08 62.8 3.6 82 152-235 90-178 (198)
83 TIGR01993 Pyr-5-nucltdase pyri 97.0 0.00049 1.1E-08 62.1 3.3 89 152-244 82-180 (184)
84 TIGR02137 HSK-PSP phosphoserin 97.0 0.001 2.2E-08 61.8 4.8 51 153-204 67-117 (203)
85 TIGR01422 phosphonatase phosph 97.0 0.00083 1.8E-08 63.9 4.4 93 153-246 98-198 (253)
86 PRK09449 dUMP phosphatase; Pro 97.0 0.0013 2.8E-08 61.2 5.6 89 153-244 94-191 (224)
87 PRK10826 2-deoxyglucose-6-phos 96.9 0.00088 1.9E-08 62.4 3.8 91 153-245 91-188 (222)
88 PRK06769 hypothetical protein; 96.9 0.002 4.4E-08 58.1 6.0 89 154-244 28-132 (173)
89 PLN02954 phosphoserine phospha 96.8 0.0022 4.7E-08 59.6 5.8 50 153-202 83-134 (224)
90 KOG2481 Protein required for n 96.7 0.0011 2.4E-08 68.0 3.4 80 312-397 325-414 (570)
91 PRK05446 imidazole glycerol-ph 96.7 0.0069 1.5E-07 61.0 9.0 105 92-232 1-131 (354)
92 KOG3548 DNA damage checkpoint 96.7 0.0015 3.3E-08 71.0 4.3 89 309-398 919-1035(1176)
93 COG2179 Predicted hydrolase of 96.6 0.0081 1.8E-07 53.6 7.6 126 75-249 10-141 (175)
94 TIGR01663 PNK-3'Pase polynucle 96.6 0.0077 1.7E-07 63.6 8.8 107 90-232 165-294 (526)
95 PRK09456 ?-D-glucose-1-phospha 96.6 0.0012 2.6E-08 60.5 2.4 95 151-246 81-182 (199)
96 TIGR01670 YrbI-phosphatas 3-de 96.5 0.0043 9.3E-08 54.9 5.2 122 153-286 29-151 (154)
97 TIGR02009 PGMB-YQAB-SF beta-ph 96.5 0.0016 3.5E-08 58.3 2.5 88 153-244 87-181 (185)
98 COG1011 Predicted hydrolase (H 96.5 0.0049 1.1E-07 57.1 5.6 82 152-235 97-184 (229)
99 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.5 0.0047 1E-07 58.5 5.6 75 157-232 27-105 (242)
100 PRK13478 phosphonoacetaldehyde 96.4 0.0042 9E-08 59.7 4.9 92 153-245 100-199 (267)
101 PLN02779 haloacid dehalogenase 96.2 0.0048 1E-07 60.2 4.3 93 153-246 143-243 (286)
102 TIGR01990 bPGM beta-phosphoglu 96.2 0.0032 6.9E-08 56.4 2.8 88 153-244 86-180 (185)
103 TIGR01548 HAD-SF-IA-hyp1 haloa 96.2 0.012 2.6E-07 53.7 6.7 77 154-232 106-188 (197)
104 COG5163 NOP7 Protein required 96.2 0.0043 9.3E-08 61.9 3.6 92 300-397 333-438 (591)
105 COG0560 SerB Phosphoserine pho 96.1 0.009 1.9E-07 55.9 5.3 49 153-202 76-125 (212)
106 KOG2914 Predicted haloacid-hal 96.1 0.0087 1.9E-07 56.3 4.9 98 150-248 88-198 (222)
107 TIGR01691 enolase-ppase 2,3-di 96.0 0.0064 1.4E-07 57.2 3.9 92 151-244 92-191 (220)
108 TIGR02252 DREG-2 REG-2-like, H 96.0 0.012 2.6E-07 53.8 5.6 77 153-232 104-187 (203)
109 TIGR02247 HAD-1A3-hyp Epoxide 96.0 0.0029 6.3E-08 58.3 1.3 92 152-245 92-192 (211)
110 PLN02811 hydrolase 95.8 0.0067 1.5E-07 56.5 2.8 91 153-245 77-180 (220)
111 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.7 0.011 2.5E-07 53.4 4.1 82 153-235 79-176 (201)
112 TIGR01493 HAD-SF-IA-v2 Haloaci 95.7 0.0041 8.8E-08 55.4 0.9 73 152-232 88-166 (175)
113 PRK06698 bifunctional 5'-methy 95.7 0.011 2.5E-07 61.4 4.3 90 152-245 328-423 (459)
114 PRK11133 serB phosphoserine ph 95.6 0.015 3.2E-07 57.9 4.7 93 152-245 179-287 (322)
115 KOG3524 Predicted guanine nucl 95.5 0.0045 9.8E-08 65.6 0.8 94 304-398 200-293 (850)
116 PTZ00445 p36-lilke protein; Pr 95.3 0.015 3.3E-07 54.1 3.4 77 72-182 25-104 (219)
117 TIGR03333 salvage_mtnX 2-hydro 95.1 0.054 1.2E-06 50.2 6.6 51 152-202 68-119 (214)
118 PF13344 Hydrolase_6: Haloacid 94.8 0.051 1.1E-06 44.6 5.0 30 157-186 17-51 (101)
119 PRK13582 thrH phosphoserine ph 94.8 0.059 1.3E-06 49.1 5.7 81 152-233 66-155 (205)
120 TIGR01544 HAD-SF-IE haloacid d 94.7 0.071 1.5E-06 51.9 6.2 94 152-245 119-239 (277)
121 TIGR01689 EcbF-BcbF capsule bi 94.6 0.069 1.5E-06 45.9 5.3 51 154-205 24-87 (126)
122 PRK09484 3-deoxy-D-manno-octul 94.5 0.045 9.7E-07 49.8 4.2 75 167-246 62-136 (183)
123 PF08645 PNK3P: Polynucleotide 94.3 0.042 9.1E-07 49.0 3.5 52 95-178 2-54 (159)
124 PRK00192 mannosyl-3-phosphogly 94.1 0.11 2.4E-06 50.0 6.2 38 157-194 24-62 (273)
125 COG0561 Cof Predicted hydrolas 94.0 0.12 2.7E-06 49.2 6.3 59 92-194 2-61 (264)
126 PF08282 Hydrolase_3: haloacid 93.6 0.11 2.3E-06 48.1 5.0 37 157-193 18-55 (254)
127 TIGR01456 CECR5 HAD-superfamil 92.9 0.2 4.2E-06 49.8 5.8 35 157-191 19-62 (321)
128 TIGR02461 osmo_MPG_phos mannos 92.7 0.24 5.1E-06 46.6 5.9 37 157-193 18-55 (225)
129 PF09419 PGP_phosphatase: Mito 92.6 0.24 5.3E-06 44.6 5.5 114 77-239 23-155 (168)
130 TIGR02463 MPGP_rel mannosyl-3- 92.6 0.25 5.4E-06 45.7 5.8 35 159-193 21-56 (221)
131 TIGR00099 Cof-subfamily Cof su 92.5 0.24 5.2E-06 47.0 5.7 38 157-194 19-57 (256)
132 PRK03669 mannosyl-3-phosphogly 92.2 0.34 7.4E-06 46.5 6.5 35 159-193 29-64 (271)
133 PRK10748 flavin mononucleotide 92.1 0.16 3.5E-06 47.9 3.9 85 153-245 112-204 (238)
134 TIGR01487 SPP-like sucrose-pho 92.1 0.31 6.7E-06 45.0 5.7 38 157-194 21-59 (215)
135 TIGR01488 HAD-SF-IB Haloacid D 92.1 0.31 6.7E-06 43.1 5.5 49 153-202 72-121 (177)
136 PRK10513 sugar phosphate phosp 92.0 0.35 7.6E-06 46.1 6.2 37 157-193 23-60 (270)
137 smart00775 LNS2 LNS2 domain. T 91.8 0.41 8.8E-06 42.5 5.9 35 155-189 28-66 (157)
138 PRK10530 pyridoxal phosphate ( 91.4 0.52 1.1E-05 44.8 6.6 36 159-194 25-61 (272)
139 PLN02645 phosphoglycolate phos 91.4 0.23 4.9E-06 49.0 4.2 75 157-233 47-123 (311)
140 COG2503 Predicted secreted aci 91.3 0.18 3.9E-06 47.9 3.1 94 70-181 56-150 (274)
141 PRK01158 phosphoglycolate phos 90.9 0.56 1.2E-05 43.5 6.2 38 157-194 23-61 (230)
142 PRK10444 UMP phosphatase; Prov 90.7 0.42 9.2E-06 45.7 5.2 35 157-191 20-55 (248)
143 PLN02887 hydrolase family prot 90.7 0.45 9.7E-06 51.1 5.9 78 72-193 287-365 (580)
144 TIGR01675 plant-AP plant acid 90.6 1.1 2.3E-05 42.6 7.7 129 89-236 73-210 (229)
145 KOG0966 ATP-dependent DNA liga 90.6 0.53 1.1E-05 51.3 6.2 144 242-397 713-881 (881)
146 TIGR01482 SPP-subfamily Sucros 90.0 0.53 1.2E-05 43.4 5.2 13 96-108 1-13 (225)
147 PRK15126 thiamin pyrimidine py 89.9 0.69 1.5E-05 44.3 6.0 39 331-369 191-240 (272)
148 PRK10976 putative hydrolase; P 89.9 0.7 1.5E-05 44.0 6.0 15 94-108 3-17 (266)
149 TIGR01484 HAD-SF-IIB HAD-super 89.8 0.62 1.3E-05 42.4 5.4 36 156-191 19-55 (204)
150 TIGR01486 HAD-SF-IIB-MPGP mann 89.5 0.71 1.5E-05 43.9 5.7 36 158-193 20-56 (256)
151 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.8 0.56 1.2E-05 44.9 4.5 25 157-181 24-49 (257)
152 TIGR01452 PGP_euk phosphoglyco 88.4 0.71 1.5E-05 44.7 5.0 23 157-179 21-44 (279)
153 PRK05601 DNA polymerase III su 87.9 1.3 2.8E-05 44.9 6.4 74 314-387 294-369 (377)
154 TIGR02244 HAD-IG-Ncltidse HAD 87.6 0.71 1.5E-05 46.3 4.4 56 149-205 179-242 (343)
155 TIGR01490 HAD-SF-IB-hyp1 HAD-s 87.2 1.1 2.4E-05 40.6 5.2 49 153-202 86-135 (202)
156 TIGR01457 HAD-SF-IIA-hyp2 HAD- 86.9 1.1 2.4E-05 42.7 5.2 23 157-179 20-43 (249)
157 COG0647 NagD Predicted sugar p 86.5 0.97 2.1E-05 43.9 4.6 50 157-208 27-81 (269)
158 COG0241 HisB Histidinol phosph 86.5 2.4 5.1E-05 38.7 6.8 100 154-255 31-153 (181)
159 PTZ00174 phosphomannomutase; P 86.4 1.4 3.1E-05 41.7 5.7 17 93-109 5-21 (247)
160 TIGR02726 phenyl_P_delta pheny 85.8 1.2 2.6E-05 40.2 4.5 77 167-248 48-124 (169)
161 TIGR01680 Veg_Stor_Prot vegeta 85.3 2.6 5.7E-05 40.9 6.8 80 156-236 147-236 (275)
162 PLN02423 phosphomannomutase 85.1 1.6 3.4E-05 41.6 5.2 18 91-108 5-22 (245)
163 PF11019 DUF2608: Protein of u 84.7 1.8 3.8E-05 41.6 5.4 100 151-251 78-211 (252)
164 TIGR01460 HAD-SF-IIA Haloacid 84.2 1.2 2.5E-05 42.1 3.9 34 157-190 17-55 (236)
165 PF03767 Acid_phosphat_B: HAD 84.1 0.53 1.2E-05 44.5 1.5 36 155-190 116-152 (229)
166 TIGR01548 HAD-SF-IA-hyp1 haloa 83.9 0.54 1.2E-05 42.7 1.4 15 95-109 2-16 (197)
167 PRK10187 trehalose-6-phosphate 83.8 1.7 3.6E-05 42.0 4.8 59 93-190 14-74 (266)
168 PRK12702 mannosyl-3-phosphogly 83.3 2.7 5.8E-05 41.4 6.0 36 159-194 23-59 (302)
169 PLN03017 trehalose-phosphatase 82.6 2 4.3E-05 43.5 5.0 63 86-187 104-166 (366)
170 TIGR00685 T6PP trehalose-phosp 81.0 1.1 2.4E-05 42.4 2.4 63 91-193 1-63 (244)
171 TIGR01993 Pyr-5-nucltdase pyri 80.8 0.78 1.7E-05 41.1 1.3 15 95-109 2-16 (184)
172 TIGR01511 ATPase-IB1_Cu copper 79.9 6.2 0.00013 42.3 7.9 74 152-233 403-477 (562)
173 KOG3120 Predicted haloacid deh 79.9 3.9 8.4E-05 38.5 5.4 53 153-207 83-137 (256)
174 TIGR01485 SPP_plant-cyano sucr 79.5 2.8 6.1E-05 39.6 4.7 16 93-108 1-16 (249)
175 PRK14502 bifunctional mannosyl 79.5 3.9 8.5E-05 44.6 6.2 34 160-193 439-473 (694)
176 PF00702 Hydrolase: haloacid d 77.4 6.2 0.00013 35.5 6.1 78 150-232 123-205 (215)
177 PLN02151 trehalose-phosphatase 77.1 3.9 8.5E-05 41.3 5.0 63 87-188 92-154 (354)
178 COG4359 Uncharacterized conser 76.0 5.7 0.00012 36.4 5.2 39 153-191 72-111 (220)
179 TIGR02253 CTE7 HAD superfamily 76.0 1.4 3E-05 40.5 1.4 16 94-109 3-18 (221)
180 TIGR02252 DREG-2 REG-2-like, H 75.6 1.6 3.6E-05 39.5 1.8 15 95-109 2-16 (203)
181 COG3882 FkbH Predicted enzyme 75.2 2 4.4E-05 44.7 2.4 127 86-249 215-355 (574)
182 TIGR02009 PGMB-YQAB-SF beta-ph 74.7 1.4 3E-05 39.1 1.0 15 95-109 3-17 (185)
183 PLN02770 haloacid dehalogenase 74.3 1.4 3E-05 41.8 1.0 16 94-109 23-38 (248)
184 TIGR01990 bPGM beta-phosphoglu 74.1 1.4 3E-05 39.1 0.9 15 95-109 1-15 (185)
185 PLN02580 trehalose-phosphatase 72.9 5.7 0.00012 40.6 5.0 63 87-188 113-175 (384)
186 TIGR01493 HAD-SF-IA-v2 Haloaci 72.9 1.6 3.5E-05 38.5 1.0 14 96-109 2-15 (175)
187 PRK13478 phosphonoacetaldehyde 72.6 1.9 4.1E-05 41.2 1.5 15 94-108 5-19 (267)
188 PRK11590 hypothetical protein; 72.6 2 4.3E-05 39.7 1.5 39 153-191 94-134 (211)
189 TIGR01449 PGP_bact 2-phosphogl 72.5 1.4 3E-05 40.2 0.4 14 96-109 1-14 (213)
190 TIGR01422 phosphonatase phosph 72.1 2.1 4.5E-05 40.5 1.6 16 94-109 3-18 (253)
191 TIGR01512 ATPase-IB2_Cd heavy 71.0 6.1 0.00013 42.1 5.0 78 151-235 359-438 (536)
192 TIGR01545 YfhB_g-proteo haloac 70.9 7.3 0.00016 36.1 4.9 38 153-190 93-132 (210)
193 TIGR01525 ATPase-IB_hvy heavy 70.9 5.2 0.00011 42.7 4.4 76 151-233 381-458 (556)
194 PRK10748 flavin mononucleotide 70.7 2.2 4.7E-05 40.2 1.4 16 94-109 11-26 (238)
195 PRK11590 hypothetical protein; 70.3 6.3 0.00014 36.3 4.3 17 92-108 5-21 (211)
196 PF06888 Put_Phosphatase: Puta 69.2 8.7 0.00019 36.5 5.1 51 152-204 69-122 (234)
197 TIGR01509 HAD-SF-IA-v3 haloaci 69.0 2.1 4.6E-05 37.7 0.8 15 95-109 1-15 (183)
198 TIGR01428 HAD_type_II 2-haloal 68.3 2.3 4.9E-05 38.4 0.9 15 95-109 3-17 (198)
199 COG1877 OtsB Trehalose-6-phosp 68.1 9.4 0.0002 37.0 5.1 66 84-188 9-76 (266)
200 PLN02779 haloacid dehalogenase 68.0 3 6.5E-05 40.6 1.7 16 93-108 40-55 (286)
201 TIGR02254 YjjG/YfnB HAD superf 67.4 2.7 5.9E-05 38.4 1.3 15 95-109 3-17 (224)
202 PF13419 HAD_2: Haloacid dehal 67.3 2.7 5.8E-05 36.2 1.1 14 96-109 1-14 (176)
203 PF06941 NT5C: 5' nucleotidase 66.2 3.9 8.4E-05 37.1 2.0 77 153-242 72-155 (191)
204 TIGR02247 HAD-1A3-hyp Epoxide 65.7 3.5 7.5E-05 37.7 1.6 14 95-108 4-17 (211)
205 PRK10826 2-deoxyglucose-6-phos 65.7 3.3 7.2E-05 38.2 1.5 18 92-109 6-23 (222)
206 KOG3085 Predicted hydrolase (H 65.5 4.7 0.0001 38.4 2.4 76 157-234 116-197 (237)
207 TIGR01491 HAD-SF-IB-PSPlk HAD- 64.7 3.9 8.5E-05 36.6 1.7 15 94-108 5-19 (201)
208 PF12710 HAD: haloacid dehalog 64.4 6.9 0.00015 34.7 3.3 48 154-201 85-138 (192)
209 PRK09449 dUMP phosphatase; Pro 63.4 3.4 7.3E-05 38.0 1.1 14 94-107 4-17 (224)
210 PLN02382 probable sucrose-phos 61.6 4.4 9.5E-05 41.8 1.6 21 87-107 3-23 (413)
211 PRK06698 bifunctional 5'-methy 61.1 3.6 7.8E-05 42.8 0.9 16 94-109 242-257 (459)
212 PRK14501 putative bifunctional 59.5 11 0.00024 41.6 4.4 61 90-189 489-551 (726)
213 COG3769 Predicted hydrolase (H 58.9 29 0.00063 32.9 6.3 30 167-196 37-66 (274)
214 PRK13582 thrH phosphoserine ph 53.7 6.9 0.00015 35.4 1.3 12 95-106 3-14 (205)
215 KOG3548 DNA damage checkpoint 52.3 18 0.00039 40.6 4.4 91 301-391 1046-1158(1176)
216 PF08235 LNS2: LNS2 (Lipin/Ned 52.3 27 0.00059 31.1 4.8 37 154-190 27-64 (157)
217 COG1011 Predicted hydrolase (H 45.9 12 0.00026 34.2 1.6 18 92-109 3-20 (229)
218 PRK09456 ?-D-glucose-1-phospha 45.8 11 0.00023 34.2 1.3 41 332-380 146-186 (199)
219 TIGR02471 sucr_syn_bact_C sucr 45.7 9.3 0.0002 35.6 0.9 13 96-108 2-14 (236)
220 TIGR01545 YfhB_g-proteo haloac 43.8 12 0.00026 34.7 1.3 17 93-109 5-21 (210)
221 KOG2134 Polynucleotide kinase 43.6 37 0.00079 34.7 4.7 58 90-179 72-130 (422)
222 COG4502 5'(3')-deoxyribonucleo 43.4 19 0.0004 31.7 2.3 28 153-180 67-94 (180)
223 PF05116 S6PP: Sucrose-6F-phos 42.6 14 0.0003 35.2 1.5 33 158-190 23-56 (247)
224 KOG1615 Phosphoserine phosphat 42.3 44 0.00095 31.1 4.6 49 154-202 88-138 (227)
225 PLN02205 alpha,alpha-trehalose 41.8 18 0.00039 40.9 2.5 20 89-108 592-611 (854)
226 TIGR01488 HAD-SF-IB Haloacid D 40.1 13 0.00028 32.5 0.9 14 96-109 2-15 (177)
227 PF05822 UMPH-1: Pyrimidine 5' 39.9 32 0.0007 33.0 3.6 39 152-190 88-127 (246)
228 PF13240 zinc_ribbon_2: zinc-r 39.7 15 0.00034 21.7 0.9 19 37-55 4-23 (23)
229 COG1105 FruK Fructose-1-phosph 38.4 64 0.0014 32.0 5.5 48 302-349 115-167 (310)
230 cd02640 R3H_NRF R3H domain of 38.0 50 0.0011 24.5 3.6 45 301-346 2-47 (60)
231 TIGR01490 HAD-SF-IB-hyp1 HAD-s 38.0 14 0.00031 33.1 0.9 14 96-109 2-15 (202)
232 PF12710 HAD: haloacid dehalog 35.6 17 0.00038 32.0 1.0 13 96-108 1-13 (192)
233 PF06941 NT5C: 5' nucleotidase 35.5 21 0.00045 32.3 1.5 17 92-108 1-17 (191)
234 KOG3908 Queuine-tRNA ribosyltr 34.6 36 0.00077 33.5 2.9 52 335-395 138-189 (396)
235 PRK14559 putative protein seri 32.8 31 0.00068 37.7 2.5 43 7-58 11-54 (645)
236 PF13248 zf-ribbon_3: zinc-rib 32.7 22 0.00049 21.5 0.8 19 37-55 7-26 (26)
237 PF05761 5_nucleotid: 5' nucle 31.1 70 0.0015 33.4 4.7 54 149-203 178-240 (448)
238 PF05864 Chordopox_RPO7: Chord 31.1 17 0.00037 26.7 0.1 16 43-58 2-17 (63)
239 PLN03064 alpha,alpha-trehalose 30.7 83 0.0018 36.0 5.4 72 89-190 587-660 (934)
240 PF05221 AdoHcyase: S-adenosyl 30.0 57 0.0012 31.7 3.5 37 310-346 36-72 (268)
241 PF11475 VP_N-CPKC: Virion pro 29.3 16 0.00035 22.9 -0.2 20 34-54 6-25 (32)
242 PF10235 Cript: Microtubule-as 28.7 23 0.00049 28.6 0.5 15 44-58 68-82 (90)
243 PLN03063 alpha,alpha-trehalose 28.4 84 0.0018 35.4 5.0 64 89-188 503-568 (797)
244 PHA03082 DNA-dependent RNA pol 28.0 20 0.00044 26.3 0.1 16 43-58 2-17 (63)
245 cd02514 GT13_GLCNAC-TI GT13_GL 26.9 76 0.0016 31.9 3.9 85 151-235 6-111 (334)
246 COG5067 DBF4 Protein kinase es 26.0 27 0.00059 35.5 0.6 46 314-359 122-167 (468)
247 PF00702 Hydrolase: haloacid d 25.5 39 0.00085 30.2 1.5 15 95-109 3-17 (215)
248 PLN02177 glycerol-3-phosphate 24.4 37 0.00081 35.9 1.3 36 155-193 111-147 (497)
249 PF05991 NYN_YacP: YacP-like N 24.2 2.7E+02 0.0059 24.7 6.7 67 312-386 62-128 (166)
250 PRK12286 rpmF 50S ribosomal pr 23.9 49 0.0011 24.3 1.5 27 25-54 23-49 (57)
251 PRK10671 copA copper exporting 23.9 92 0.002 35.1 4.3 76 154-236 650-726 (834)
252 KOG4362 Transcriptional regula 23.0 85 0.0018 34.4 3.6 81 310-390 583-680 (684)
253 PF04312 DUF460: Protein of un 22.1 70 0.0015 27.9 2.3 75 96-191 46-120 (138)
254 PF02358 Trehalose_PPase: Treh 21.8 59 0.0013 30.3 2.0 29 154-182 19-49 (235)
255 cd06536 CIDE_N_ICAD CIDE_N dom 21.7 1.3E+02 0.0027 23.8 3.4 18 91-108 40-57 (80)
256 KOG2093 Translesion DNA polyme 21.3 1E+02 0.0022 34.7 3.8 82 312-396 45-128 (1016)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2.1e-65 Score=530.15 Aligned_cols=355 Identities=35% Similarity=0.597 Sum_probs=310.1
Q ss_pred cCCCCcceeecccccccccccccCCCceeeeecCCcccCHHHHHHHhhhcch-hhhccCceEEEEeCCCceeeeeccCCC
Q 039039 35 HTICQHATILNGMCVVCDKLMDDSYGVCFDYIEKGLRYSIDEISRLKKRNTK-NLLRMRKLHLVLDLDHTLLHSRWIGKL 113 (398)
Q Consensus 35 ~~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~vs~~~a~~~~~~~~~-~ll~~~Kl~LVLDLD~TLihs~~~~~~ 113 (398)
.+.|.|+++++|||+.||++++...+..+.|+..++.++...+..++..... ..+++++|+||+|||+||+|++....+
T Consensus 87 ~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l 166 (635)
T KOG0323|consen 87 TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDL 166 (635)
T ss_pred cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchh
Confidence 4799999999999999999999998888899999999999999998887554 456777789999999999999988777
Q ss_pred CchHHHHHHHHHhhcccccccCCCCCceeEEe--eccceEEEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhC
Q 039039 114 TSDEKYLEKAAAAAGEFSSDKISRGNDLFKIK--IGDNVLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLD 191 (398)
Q Consensus 114 ~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~--~~~~~~~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LD 191 (398)
...+.|+.++...+ +.+..+|.+. ....+||||+|||+++||++++++|||||||||+|.||..|+++||
T Consensus 167 ~e~~~~l~~~~~~~--------~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liD 238 (635)
T KOG0323|consen 167 SETEKYLKEEAESV--------ESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLID 238 (635)
T ss_pred hhhhhhcccccccc--------cccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhC
Confidence 77777766544321 1234556554 3446899999999999999999999999999999999999999999
Q ss_pred CCCCccceeEEEccCCCCcccccccccc-CCCCcEEEEeCCcccccCCCCceEEeCccccccCCCCCCC-----------
Q 039039 192 PDCKYFNSRIITREDFKQKERKCLDLVL-GQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKKKNDC----------- 259 (398)
Q Consensus 192 P~~~~F~~ri~srd~~~~~~~K~L~~l~-~~~~~vvIiDD~~~vw~~~~~N~I~I~~y~ff~~~~~~~~----------- 259 (398)
|+|.||++||+||++....-.+||.+++ ++++||||||||.+||.+++.|+|+|.||.||.++|+.+.
T Consensus 239 P~~~lF~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~ 318 (635)
T KOG0323|consen 239 PEGKYFGDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVA 318 (635)
T ss_pred CCCccccceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchh
Confidence 9999999999999998776667776654 6899999999999999998779999999999999997443
Q ss_pred -----------------------------------------------------------------ccccccccCCCcchH
Q 039039 260 -----------------------------------------------------------------KSYSEQMSDESESDG 274 (398)
Q Consensus 260 -----------------------------------------------------------------~sl~~~~~d~~~~D~ 274 (398)
+++.+...|+.+.|+
T Consensus 319 ~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~ 398 (635)
T KOG0323|consen 319 CSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDG 398 (635)
T ss_pred cccccccccccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccch
Confidence 233344567788899
Q ss_pred HHHHHHHHHHHHHhhhcCCC---CCCCCCCcchhhhhhhheecccceeEEecCCCCCCch----hhHHHHHHhCCEEeee
Q 039039 275 ALANILRALKAVHALYFDNP---GNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELP----LTWSRAEEMGAICTLV 347 (398)
Q Consensus 275 ~L~~l~~~L~~ih~~ff~~~---~~~~~~~DVr~il~~~r~~vl~g~~i~fSg~~~~~~~----~l~~la~~lGa~~~~~ 347 (398)
+|.+++++|+.||..||... +.....+|||.+|+++|..+++||.++|||+.|...+ .+..++..+||..+.+
T Consensus 399 ~L~~~~kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~ 478 (635)
T KOG0323|consen 399 ELANLLKVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD 478 (635)
T ss_pred hHHHHhhhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceeccc
Confidence 99999999999999999975 3456789999999999999999999999999998533 6667799999999999
Q ss_pred cCCCccEEEECCCCCHHHHHHHhCC-CeeeChhHHHHHHHhcCcCCCCCCC
Q 039039 348 TDASITHVVSSNTQSETFEWAEQEN-KCLVHPQWINDAYFLWCRQPNDVSF 397 (398)
Q Consensus 348 ~~~~vTHlVa~~~~t~K~~~A~~~g-i~IV~~~WL~~c~~~~~r~~E~~Y~ 397 (398)
++..+||+|+.+.+|.|+.+|...+ ++||++.||+.|+.+|.+++|..|-
T Consensus 479 ~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~ 529 (635)
T KOG0323|consen 479 VSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP 529 (635)
T ss_pred ccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence 9999999999999999999999865 9999999999999999999999884
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.4e-37 Score=276.47 Aligned_cols=155 Identities=47% Similarity=0.721 Sum_probs=128.1
Q ss_pred hhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhh
Q 039039 88 LLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS 167 (398)
Q Consensus 88 ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s 167 (398)
|++++||+||||||||||||+..+.....+.+.. +....+. ....+.+...+..+++++|||+.+||++++
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~------~~~~~~~---~~~~~~f~~~~~~~~v~~rPgv~efL~~l~ 71 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDI------EEPNSET---RRDLRKFNLGTMWYLTKLRPFLHEFLKEAS 71 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccchhhhccc------ccCCccc---cccceEEEcCCeEEEEEECCCHHHHHHHHH
Confidence 5789999999999999999998654433222100 0000000 112344444466899999999999999999
Q ss_pred ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccc-cCCCCcEEEEeCCcccccCCCCceEEeC
Q 039039 168 RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLV-LGQESSIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 168 ~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l-~~~~~~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+.||++|||++++.||++|++.|||.+.+|++|+++|++|...+.|||+.+ ++++++||||||++++|..|++|+|+|+
T Consensus 72 ~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~ 151 (156)
T TIGR02250 72 KLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIE 151 (156)
T ss_pred hhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeC
Confidence 999999999999999999999999999899999999999999899999766 4599999999999999999999999999
Q ss_pred ccccc
Q 039039 247 SYDFF 251 (398)
Q Consensus 247 ~y~ff 251 (398)
||.||
T Consensus 152 ~~~~f 156 (156)
T TIGR02250 152 PYNYF 156 (156)
T ss_pred CcccC
Confidence 99998
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.7e-33 Score=251.97 Aligned_cols=154 Identities=31% Similarity=0.377 Sum_probs=131.2
Q ss_pred ceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEee--ccceEEEEeCccHHHHHHHhhccc
Q 039039 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKI--GDNVLLVKLRPFVRSFLEEASRLF 170 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~--~~~~~~vklRPgl~eFL~~~s~~y 170 (398)
|++||||||||||||+..+. ... ....+.+.. ....+|+++|||+.|||+++++.|
T Consensus 1 k~~lvlDLDeTLi~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~y 58 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMP-KVD---------------------ADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWY 58 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCC-CCC---------------------CceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcC
Confidence 68999999999999986421 100 111222222 245899999999999999999999
Q ss_pred cEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCceEEeCc
Q 039039 171 EISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGS 247 (398)
Q Consensus 171 Ei~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~~ 247 (398)
||+|||+|++.||++|++.|||.+.+|..++ +|++|.. .+.|+|+.++++++++|||||++..|..+++|+|+|.|
T Consensus 59 ei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l-~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~ 137 (162)
T TIGR02251 59 ELVIFTASLEEYADPVLDILDRGGKVISRRL-YRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKS 137 (162)
T ss_pred EEEEEcCCcHHHHHHHHHHHCcCCCEEeEEE-EccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCC
Confidence 9999999999999999999999988997665 5999963 48999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHHHh
Q 039039 248 YDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHA 288 (398)
Q Consensus 248 y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~ih~ 288 (398)
|. ++.+|++|..|+++|+.|..
T Consensus 138 f~-------------------~~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 138 WF-------------------GDPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred CC-------------------CCCCHHHHHHHHHHHHHHhc
Confidence 98 46789999999999999875
No 4
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.7e-34 Score=272.27 Aligned_cols=174 Identities=29% Similarity=0.408 Sum_probs=146.8
Q ss_pred hhhhccCceEEEEeCCCceeeeec-cCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHH
Q 039039 86 KNLLRMRKLHLVLDLDHTLLHSRW-IGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLE 164 (398)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLihs~~-~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~ 164 (398)
.++...+|++||||||+||+||+. .....+ .+|.. -..+......+||..|||+++||+
T Consensus 82 ~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~------------~d~~~--------~v~~~~~~~~~yV~kRP~vdeFL~ 141 (262)
T KOG1605|consen 82 LRLATVGRKTLVLDLDETLVHSSLNLKPIVN------------ADFTV--------PVEIDGHIHQVYVRKRPHVDEFLS 141 (262)
T ss_pred cccccCCCceEEEeCCCcccccccccCCCCC------------cceee--------eeeeCCcceEEEEEcCCCHHHHHH
Confidence 344578999999999999999994 221111 11110 111222345899999999999999
Q ss_pred HhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCc
Q 039039 165 EASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVEN 241 (398)
Q Consensus 165 ~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N 241 (398)
.++++||+++||++.+.||.+|+++|||.+++|.+|+| |++|.. .++|||..++++++.||||||+|.++..||+|
T Consensus 142 ~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~N 220 (262)
T KOG1605|consen 142 RVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPEN 220 (262)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccC
Confidence 99999999999999999999999999998889999988 999986 79999999999999999999999999999999
Q ss_pred eEEeCccccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhhhhh
Q 039039 242 LITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKI 310 (398)
Q Consensus 242 ~I~I~~y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~ 310 (398)
+|+|+||. .+..|++|++|+++|+.+.. ..|||+++...
T Consensus 221 gIpI~sw~-------------------~d~~D~eLL~LlpfLe~L~~-----------~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 221 GIPIKSWF-------------------DDPTDTELLKLLPFLEALAF-----------VDDVRPILARR 259 (262)
T ss_pred CCcccccc-------------------cCCChHHHHHHHHHHHHhcc-----------cccHHHHHHHh
Confidence 99999998 56779999999999999864 58999998753
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.98 E-value=4.4e-32 Score=241.20 Aligned_cols=150 Identities=35% Similarity=0.430 Sum_probs=113.6
Q ss_pred eEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhccccEE
Q 039039 94 LHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEIS 173 (398)
Q Consensus 94 l~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~~yEi~ 173 (398)
++|||||||||+|+...+... ..+........+++++|||+++||+++++.|||+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~-------------------------~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~ 55 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLP-------------------------YDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVV 55 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT--------------------------SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEE
T ss_pred CEEEEeCCCcEEEEeecCCCC-------------------------cccceeccccceeEeeCchHHHHHHHHHHhceEE
Confidence 589999999999999743210 0011001234799999999999999999999999
Q ss_pred EEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCceEEeCcccc
Q 039039 174 VCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDF 250 (398)
Q Consensus 174 I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~~y~f 250 (398)
|||+|++.||.+|++.|||.+.+|. ++++|++|.. .+.|||++++.+.+.+|||||++.+|..+++|+|+|+||.
T Consensus 56 i~T~~~~~ya~~v~~~ldp~~~~~~-~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~- 133 (159)
T PF03031_consen 56 IWTSASEEYAEPVLDALDPNGKLFS-RRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF- 133 (159)
T ss_dssp EE-SS-HHHHHHHHHHHTTTTSSEE-EEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S-
T ss_pred EEEeehhhhhhHHHHhhhhhccccc-cccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc-
Confidence 9999999999999999999988994 4557999963 3479999998899999999999999998899999999997
Q ss_pred ccCCCCCCCccccccccCCC-cchHHHHHHHHHHHHHHh
Q 039039 251 FKGKKKNDCKSYSEQMSDES-ESDGALANILRALKAVHA 288 (398)
Q Consensus 251 f~~~~~~~~~sl~~~~~d~~-~~D~~L~~l~~~L~~ih~ 288 (398)
.+ .+|++|..++++|+++++
T Consensus 134 ------------------~~~~~D~~L~~l~~~L~~l~~ 154 (159)
T PF03031_consen 134 ------------------GDTPNDRELLRLLPFLEELAK 154 (159)
T ss_dssp ------------------SCHTT--HHHHHHHHHHHHHT
T ss_pred ------------------CCCcchhHHHHHHHHHHHhCc
Confidence 34 689999999999999986
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.96 E-value=5.6e-29 Score=227.87 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=127.7
Q ss_pred hhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh
Q 039039 87 NLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~ 166 (398)
+....+|++||||||+||+|+.... + ..++.+|||+++||+.+
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~~~------------------------~-------------~~~~~kRP~l~eFL~~~ 57 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRSPA------------------------E-------------TGEELMRPYLHEFLTSA 57 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccccC------------------------C-------------CceEEeCCCHHHHHHHH
Confidence 3456788999999999999985310 0 35678999999999999
Q ss_pred hccccEEEEcCCcHHHHHHHHHHhCCCCC-ccceeEEEccCCCC----------ccccccccccC------CCCcEEEEe
Q 039039 167 SRLFEISVCTMGNREYATRAVKLLDPDCK-YFNSRIITREDFKQ----------KERKCLDLVLG------QESSIVIVD 229 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~~LDP~~~-~F~~ri~srd~~~~----------~~~K~L~~l~~------~~~~vvIiD 229 (398)
+++|||+|||++++.||+.+++.|++.+. -|.-+ +.++.|.. .+.|+|+.+.+ +++.+||||
T Consensus 58 ~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~-~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVD 136 (195)
T TIGR02245 58 YEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKIT-FLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFD 136 (195)
T ss_pred HhCCEEEEEecCCHHHHHHHHHHhcccCCccceEE-EEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEe
Confidence 99999999999999999999999987542 23222 23566631 25899997732 678999999
Q ss_pred CCcccccCCCCceEEeCccccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhhhh
Q 039039 230 DTESVWGGRVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK 309 (398)
Q Consensus 230 D~~~vw~~~~~N~I~I~~y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~ 309 (398)
|++.++..||+|+|+|+||. ... ..+.+|.+|..|+++|+.|+. ..|||++...
T Consensus 137 d~p~~~~~~P~N~i~I~~f~-~~~--------------~~~~~D~eL~~L~~yL~~la~-----------~~Dvr~~~~~ 190 (195)
T TIGR02245 137 DLRRNFLMNPQNGLKIRPFK-KAH--------------ANRGTDQELLKLTQYLKTIAE-----------LEDFSSLDHK 190 (195)
T ss_pred CCHHHHhcCCCCccccCCcc-ccC--------------CCCcccHHHHHHHHHHHHHhc-----------Ccccchhhhc
Confidence 99999999999999999996 111 025789999999999999986 7899998763
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.91 E-value=5.8e-24 Score=187.43 Aligned_cols=142 Identities=35% Similarity=0.377 Sum_probs=114.5
Q ss_pred CceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhcccc
Q 039039 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFE 171 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~~yE 171 (398)
||++|||||||||+|+...+ +.+.. .. .. ...+.+......+++++|||+.|||+++.+.|+
T Consensus 1 ~k~~lvldld~tl~~~~~~~---~~~~~-------~~-----~~---~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~ 62 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRS---FKEWT-------NR-----DF---IVPVLIDGHPHGVYVKKRPGVDEFLKRASELFE 62 (148)
T ss_pred CCcEEEEeCCCCeECCCCCc---CCCCC-------cc-----ce---EEEEEeCCceEEEEEEECCCHHHHHHHHHhccE
Confidence 79999999999999997421 11100 00 00 011222233458999999999999999999999
Q ss_pred EEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCceEEeCcc
Q 039039 172 ISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSY 248 (398)
Q Consensus 172 i~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~~y 248 (398)
++|||++.+.||+.+++.+|+.+.+| ++|++++++.. .+.|+|++++.+++.+|+|||++..|..++.|+|+|+||
T Consensus 63 l~I~Ts~~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f 141 (148)
T smart00577 63 LVVFTAGLRMYADPVLDLLDPKKYFG-YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPW 141 (148)
T ss_pred EEEEeCCcHHHHHHHHHHhCcCCCEe-eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCc
Confidence 99999999999999999999976445 78999999864 478899999899999999999999999999999999999
Q ss_pred cccc
Q 039039 249 DFFK 252 (398)
Q Consensus 249 ~ff~ 252 (398)
.++.
T Consensus 142 ~~~~ 145 (148)
T smart00577 142 FGDP 145 (148)
T ss_pred CCCC
Confidence 9554
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.91 E-value=1.9e-24 Score=209.00 Aligned_cols=157 Identities=23% Similarity=0.335 Sum_probs=143.7
Q ss_pred ccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhcc
Q 039039 90 RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRL 169 (398)
Q Consensus 90 ~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~~ 169 (398)
.+.+++|||||.++|||..|.- ...+.+++|||++.||..++++
T Consensus 186 ~Qp~yTLVleledvLVhpdws~------------------------------------~tGwRf~kRPgvD~FL~~~a~~ 229 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWSY------------------------------------KTGWRFKKRPGVDYFLGHLAKY 229 (393)
T ss_pred cCCCceEEEEeeeeEeccchhh------------------------------------hcCceeccCchHHHHHHhhccc
Confidence 3589999999999999998721 1268899999999999999999
Q ss_pred ccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCceEEeC
Q 039039 170 FEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 170 yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
|||+|||.....||.++++.|||.| +++.|+| |+.+.. .++|||+.|++|+..||+||=++.....||+|.|+++
T Consensus 230 yEIVi~sse~gmt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~ 307 (393)
T KOG2832|consen 230 YEIVVYSSEQGMTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLE 307 (393)
T ss_pred ceEEEEecCCccchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccC
Confidence 9999999999999999999999997 8889998 998875 6899999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhhhhhhe
Q 039039 247 SYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRS 312 (398)
Q Consensus 247 ~y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~ 312 (398)
||. ++++|+.|.+|+.+|+.||+ .+..|||++|+.+..
T Consensus 308 ~W~-------------------Gn~dDt~L~dL~~FL~~ia~---------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 308 PWS-------------------GNDDDTSLFDLLAFLEYIAQ---------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred cCC-------------------CCcccchhhhHHHHHHHHHH---------ccHHHHHHHHHHhcc
Confidence 998 68889999999999999997 458999999987654
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.86 E-value=3.3e-22 Score=198.62 Aligned_cols=296 Identities=22% Similarity=0.318 Sum_probs=219.0
Q ss_pred cccCHHHHHHHhhhcchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccc
Q 039039 70 LRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDN 149 (398)
Q Consensus 70 l~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~ 149 (398)
.+++.++|.+.+.+...+|-.++++.||+|+|+|.+|++..+......++ .....+..+. +.. .....+
T Consensus 3 ~~i~~~~~~~~~~~~~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~--~~~~~~~~~~-~~~--------~~~~~~ 71 (390)
T COG5190 3 VNISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQ--SLERTLKSVN-DRD--------PVQEKC 71 (390)
T ss_pred ceeEeeehhhhhhhHHHHhhcCcccccccccccceecccccCCCCCchhh--hhhccccchh-ccc--------cccccc
Confidence 36788999999999999999999999999999999999986522222221 1001111010 000 112356
Q ss_pred eEEEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCcccccccccc-CCCCcEEEE
Q 039039 150 VLLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVL-GQESSIVIV 228 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~-~~~~~vvIi 228 (398)
++++|.||++..|+...++.||+++||||++.||..+++++||.|.+|.+|+.+|+......+|.+++++ .+.++++|+
T Consensus 72 ~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~ 151 (390)
T COG5190 72 AYYVKARPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVII 151 (390)
T ss_pred cceeeecccccchhhhhchhcceeeEeeccccchhhhhhcccccccccccccccccccccchhhhhhhcCcccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999988899999876 589999999
Q ss_pred eCCcccc---cCCCCceEEeCccccccCCCCC--------------CCcccc----cc----------------------
Q 039039 229 DDTESVW---GGRVENLITVGSYDFFKGKKKN--------------DCKSYS----EQ---------------------- 265 (398)
Q Consensus 229 DD~~~vw---~~~~~N~I~I~~y~ff~~~~~~--------------~~~sl~----~~---------------------- 265 (398)
||++++| .. -.|++...|+.++...-++ +...+. +.
T Consensus 152 ~d~~~~~~~~d~-~~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~ 230 (390)
T COG5190 152 DDRGDVWGVGDM-NSNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRY 230 (390)
T ss_pred ccccccCCccch-hhhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeecccc
Confidence 9999999 44 3688888886655443331 000000 00
Q ss_pred --------ccCCC--------cchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhhhhhheecccceeEEecCCCCCC
Q 039039 266 --------MSDES--------ESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEE 329 (398)
Q Consensus 266 --------~~d~~--------~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~~vl~g~~i~fSg~~~~~ 329 (398)
..+.. ..|.+|..++..|.++|.-+|.......-...|..+|+..+ +|++|-+.++++++.+
T Consensus 231 ~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G 308 (390)
T COG5190 231 ITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLG 308 (390)
T ss_pred ccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccC
Confidence 00111 46889999999999999888776443333455899999888 9999999999999986
Q ss_pred chhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHHhcCcCCCCCC
Q 039039 330 LPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFLWCRQPNDVS 396 (398)
Q Consensus 330 ~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~Y 396 (398)
. .+..++.- | .+=.-||+|+.++.+- +....+.|+.+.|+.+ ++.+|..|
T Consensus 309 ~-~ikDis~i-~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d-----~~d~el~~ 358 (390)
T COG5190 309 V-YIKDISKI-G------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD-----EHDDELLN 358 (390)
T ss_pred c-hhhhHHhh-c------cCCCceEEeeCChhhh----hhCccceeccCccccc-----ccchhhhh
Confidence 6 44433332 2 3335789999887664 3445678999999998 44455444
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.78 E-value=1.1e-19 Score=180.63 Aligned_cols=170 Identities=28% Similarity=0.368 Sum_probs=140.9
Q ss_pred hccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc
Q 039039 89 LRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~ 168 (398)
-...+.+|++|||+||+||.... ... .+|... .........+|+..|||+.+||..+++
T Consensus 208 ~~~~~k~L~l~lde~l~~S~~~~-~~~------------~df~~~--------~e~~~~~~~~~v~kRp~l~~fl~~ls~ 266 (390)
T COG5190 208 STSPKKTLVLDLDETLVHSSFRY-ITL------------LDFLVK--------VEISLLQHLVYVSKRPELDYFLGKLSK 266 (390)
T ss_pred CCCCccccccCCCccceeecccc-ccc------------cchhhc--------cccccceeEEEEcCChHHHHHHhhhhh
Confidence 34678899999999999998642 111 112110 111112347999999999999999999
Q ss_pred cccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEEEeCCcccccCCCCceEEe
Q 039039 169 LFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 169 ~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I 245 (398)
+|++++||++.+.||++|+++||+.+ .|++|+| |.+|.. .|+|||..++++...++|||++|..|..+++|+|+|
T Consensus 267 ~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i 344 (390)
T COG5190 267 IHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPI 344 (390)
T ss_pred hEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceecc
Confidence 99999999999999999999999998 8988888 999975 588999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhhhh
Q 039039 246 GSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK 309 (398)
Q Consensus 246 ~~y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~ 309 (398)
.+|. +++.|.+|.+++.+|+.|-. .+..||+.++..
T Consensus 345 ~~W~-------------------~d~~d~el~~ll~~le~L~~---------~~~~d~~~~l~~ 380 (390)
T COG5190 345 EKWI-------------------SDEHDDELLNLLPFLEDLPD---------RDLKDVSSILQS 380 (390)
T ss_pred Cccc-------------------ccccchhhhhhccccccccc---------ccchhhhhhhhh
Confidence 9998 45789999999999998864 246788887764
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.56 E-value=4.9e-15 Score=111.58 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=55.9
Q ss_pred eeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhH
Q 039039 318 CTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQW 380 (398)
Q Consensus 318 ~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 380 (398)
++|||||+.+.++..++++++.+||++..+++..+|||||.+..++|++.|+++|++||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.50 E-value=5.9e-14 Score=108.97 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=69.6
Q ss_pred heecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCC--CCHHHHHHHhCCCeeeChhHHHHHH
Q 039039 311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNT--QSETFEWAEQENKCLVHPQWINDAY 385 (398)
Q Consensus 311 r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~--~t~K~~~A~~~gi~IV~~~WL~~c~ 385 (398)
+.++|+||.+++++.....+..+.++++.+||++...+++.+||+|+.+. .+.|+..|...|++||+++||.+|+
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 56789999999977777678899999999999999999999999999987 8899999999999999999999996
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.39 E-value=2e-13 Score=132.27 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=84.9
Q ss_pred hheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHHhcC
Q 039039 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFLWC 389 (398)
Q Consensus 310 ~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~ 389 (398)
-=.++|+|+++|+||+....|..|..-|..|||+|..|++..+|||||+-.+|.||++...+|..||+-+||.+|+++.+
T Consensus 313 el~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk 392 (508)
T KOG3226|consen 313 ELSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKK 392 (508)
T ss_pred hHHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHh
Confidence 34578999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 039039 390 RQPNDVSFF 398 (398)
Q Consensus 390 r~~E~~Y~~ 398 (398)
++|-..|+|
T Consensus 393 ~lp~rrYlm 401 (508)
T KOG3226|consen 393 LLPIRRYLM 401 (508)
T ss_pred hccHHHHHh
Confidence 999999986
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.32 E-value=4.7e-12 Score=97.17 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=65.2
Q ss_pred ecccceeEEecC-CCCCCchhhHHHHHHhCCEEeeecCC-CccEEEECCCCCHH--HHHHHhCCCeeeChhHHHHHHHhc
Q 039039 313 RILMGCTILFGD-DDFEELPLTWSRAEEMGAICTLVTDA-SITHVVSSNTQSET--FEWAEQENKCLVHPQWINDAYFLW 388 (398)
Q Consensus 313 ~vl~g~~i~fSg-~~~~~~~~l~~la~~lGa~~~~~~~~-~vTHlVa~~~~t~K--~~~A~~~gi~IV~~~WL~~c~~~~ 388 (398)
.+|+|++++|+| .....+..+++++.++||++...+++ .+||+|+.+....+ +..|...+++||+++||.+|+..|
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHHCc
Confidence 379999999999 44445669999999999999999998 99999999866554 577778999999999999998754
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.29 E-value=1.2e-11 Score=92.87 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=62.4
Q ss_pred ceeEEecCCC-CCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHH-HHHHHhCCCeeeChhHHHHHH
Q 039039 317 GCTILFGDDD-FEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSET-FEWAEQENKCLVHPQWINDAY 385 (398)
Q Consensus 317 g~~i~fSg~~-~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K-~~~A~~~gi~IV~~~WL~~c~ 385 (398)
|+.++|+|.. ...+..+.++++.+||++..++++.+||+|+.+....+ +..|...|++||+++||.+|+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 6899999998 44667999999999999999999999999999877665 888888999999999999996
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.82 E-value=7e-09 Score=112.71 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=78.9
Q ss_pred hheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC-----CCCHHHHHHHhCCCeeeChhHHHHH
Q 039039 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN-----TQSETFEWAEQENKCLVHPQWINDA 384 (398)
Q Consensus 310 ~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~-----~~t~K~~~A~~~gi~IV~~~WL~~c 384 (398)
....+|.|++|+|+|.++..+..+..+++.+||++++++ +.+||+|++. .++.|+++|++.||+||+.+||.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~ 263 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDS 263 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHH
Confidence 455679999999999998777799999999999999999 7788999886 2358999999999999999999999
Q ss_pred HHhcCcCCCCCCCC
Q 039039 385 YFLWCRQPNDVSFF 398 (398)
Q Consensus 385 ~~~~~r~~E~~Y~~ 398 (398)
+...+.+++..|++
T Consensus 264 i~~~k~~~~~~y~l 277 (815)
T PLN03122 264 IEKQEAQPLEAYDV 277 (815)
T ss_pred HhcCCcccchhhhh
Confidence 99999999999864
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.73 E-value=1.7e-08 Score=111.83 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=79.6
Q ss_pred hheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC---CCCHHHHHHHhCCCeeeChhHHHHHHH
Q 039039 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN---TQSETFEWAEQENKCLVHPQWINDAYF 386 (398)
Q Consensus 310 ~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~---~~t~K~~~A~~~gi~IV~~~WL~~c~~ 386 (398)
...++|+|++|+++|.++...+.+.+.++.+||++++++++.+||+|+.. ....|+++|++.|++||+.+||.+|..
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~ 468 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFK 468 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHh
Confidence 45578999999999999877778889999999999999999999999985 346789999999999999999999999
Q ss_pred hcCcCCCCCCC
Q 039039 387 LWCRQPNDVSF 397 (398)
Q Consensus 387 ~~~r~~E~~Y~ 397 (398)
...++|+..|.
T Consensus 469 ~~~~~p~~~y~ 479 (981)
T PLN03123 469 KKKKLPFDKYK 479 (981)
T ss_pred ccccCcchhhh
Confidence 99999998874
No 18
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.32 E-value=4.4e-07 Score=77.95 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=60.0
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCC-cHHHHHHHHHHhCC------CCCccceeEEEccCCCC--cccccccccc--CC
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMG-NREYATRAVKLLDP------DCKYFNSRIITREDFKQ--KERKCLDLVL--GQ 221 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g-~~~YA~~il~~LDP------~~~~F~~ri~srd~~~~--~~~K~L~~l~--~~ 221 (398)
++.||+.++|+++ ++.+.++|.|++ .+.|+..+++...+ -..+|.. +++.++... .+.+-+++++ ..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~ 107 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLK 107 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCC
Confidence 6779999999999 678999999999 99999999998762 1235633 333333221 3556667777 78
Q ss_pred CCcEEEEeCCccc
Q 039039 222 ESSIVIVDDTESV 234 (398)
Q Consensus 222 ~~~vvIiDD~~~v 234 (398)
++.+++|||++..
T Consensus 108 p~~~l~igDs~~n 120 (128)
T TIGR01681 108 PKSILFVDDRPDN 120 (128)
T ss_pred cceEEEECCCHhH
Confidence 8999999999743
No 19
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.27 E-value=1.9e-06 Score=82.99 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=73.2
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+++. +.|.++|.|++++.++..+++.++-.. || +.+++.++... .+.+.+++++..++.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F-d~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FF-SVVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC-cEEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 3568999999999995 679999999999999999999998665 88 55777777642 356667777778899
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++|+|+..-.......++++
T Consensus 185 ~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 185 CIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred eEEEcCCHHHHHHHHHcCCEE
Confidence 999999986554445556554
No 20
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.27 E-value=4.2e-07 Score=83.72 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=71.3
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+++ .+.+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+.+-++++.-+++.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f-~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LF-DHVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-he-eeEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 467899999999999 5689999999999999999999998876 78 56777776532 233444555567889
Q ss_pred EEEEeCCcccccCCCCceEEeC
Q 039039 225 IVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+++|+|++.-......+++++.
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeEE
Confidence 9999999854544455666643
No 21
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.25 E-value=9.2e-07 Score=81.99 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=71.3
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+++.||+.++|+.+ ++.+.++|.|++.+.++..+++.++-.. || +.+++.+++.. .+.+-++++..+++.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f-~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FF-DVVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ce-eEEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 467889999999999 4689999999999999999999998775 88 56887776542 234455556667889
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++|+|++.-......+++++
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred EEEECCCHHHHHHHHHCCCeE
Confidence 999999996554444555543
No 22
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.24 E-value=2.4e-06 Score=77.44 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=69.3
Q ss_pred eEEEEeCccHHHHHHHh-hccccEEEEcCC-cHHHHHHHHHHhCCC--C------CccceeEEEccCCCC-cc----ccc
Q 039039 150 VLLVKLRPFVRSFLEEA-SRLFEISVCTMG-NREYATRAVKLLDPD--C------KYFNSRIITREDFKQ-KE----RKC 214 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~-s~~yEi~I~T~g-~~~YA~~il~~LDP~--~------~~F~~ri~srd~~~~-~~----~K~ 214 (398)
..-+.++||+.++|+.+ ++.+.+.|.|++ .+.+++.+++.++.. | .+| +.+++.++... .. .+.
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~F-d~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLF-DDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhc-eeeeeccCCchHHHHHHHHHH
Confidence 45678999999999999 578999999988 999999999999865 1 478 44555554321 11 122
Q ss_pred cccc---cCCCCcEEEEeCCcccccCCCCceEEeC
Q 039039 215 LDLV---LGQESSIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 215 L~~l---~~~~~~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+... .-+++.+++|||++.-......+++.+.
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 2222 2467999999999977765566777663
No 23
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.22 E-value=1.4e-06 Score=84.62 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=66.3
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---ccccccccccCCCCcEEE
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKCLDLVLGQESSIVI 227 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~vvI 227 (398)
.+.+.||+.++|+.+ .+.+.+.|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-++++..+++.+++
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F-~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~ 217 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LF-SVVQAGTPILSKRRALSQLVAREGWQPAAVMY 217 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-he-EEEEecCCCCCCHHHHHHHHHHhCcChhHEEE
Confidence 356789999999999 5779999999999999999999998765 88 45665554321 123333444556788999
Q ss_pred EeCCcccccCCCCceEEe
Q 039039 228 VDDTESVWGGRVENLITV 245 (398)
Q Consensus 228 iDD~~~vw~~~~~N~I~I 245 (398)
|+|++.-.......++.+
T Consensus 218 IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 218 VGDETRDVEAARQVGLIA 235 (273)
T ss_pred ECCCHHHHHHHHHCCCeE
Confidence 999985443333455554
No 24
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.18 E-value=2.3e-06 Score=86.45 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=72.6
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
..+.||+.+||+.+ .+.+.+.|.|++.+.+++.+++.++-.. || +.|++.++... .+.+.+++++..++.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yF-d~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FF-SVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-Hc-eEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 46789999999999 6789999999999999999999998775 89 67888887643 3456667777788999
Q ss_pred EEEeCCcccccCCCCceEEe
Q 039039 226 VIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~I 245 (398)
|+|+|+..-.......++++
T Consensus 293 l~IGDS~~DIeAAk~AGm~~ 312 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMKC 312 (381)
T ss_pred EEEcCCHHHHHHHHHcCCEE
Confidence 99999986555444444443
No 25
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.15 E-value=2.5e-06 Score=77.09 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=67.3
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcEE
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSIV 226 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~vv 226 (398)
+.+-|+ .+.|+.+.+.+.++|-|++.+.+++.+++.++-.+ || +.|++.++... .+...++++..+++.+|
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~f-d~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YF-DAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hc-eEEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 345686 48999997779999999999999999999998765 88 56888887643 23444555666778999
Q ss_pred EEeCCcccccCCCCceEE
Q 039039 227 IVDDTESVWGGRVENLIT 244 (398)
Q Consensus 227 IiDD~~~vw~~~~~N~I~ 244 (398)
+|+|++.-......++++
T Consensus 164 ~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 164 VFEDADFGIQAARAAGMD 181 (188)
T ss_pred EEeccHhhHHHHHHCCCE
Confidence 999998655544445544
No 26
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.14 E-value=3.2e-06 Score=79.47 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=69.6
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
+.+.||+.++|+.+ ++.|.+.|-|++.+.++...++.++-.. +|. .+++.++... .+.+-+++++-+++.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd-~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLD-LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCC-EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 67899999999999 5679999999999999999999887654 784 4666665542 2455566667788999
Q ss_pred EEEeCCcccccCCCCceEE
Q 039039 226 VIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~ 244 (398)
++|+|++.-......++++
T Consensus 170 l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEEcCCHHHHHHHHHcCCe
Confidence 9999998655444556664
No 27
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.13 E-value=7.9e-06 Score=79.30 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=69.2
Q ss_pred ccCHHHHHHHhhhcchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccce
Q 039039 71 RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV 150 (398)
Q Consensus 71 ~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~ 150 (398)
..+..|...++. ..+.-.....+||||||||+....
T Consensus 107 v~~~~~v~~l~~---~~~~~~~~kvIvFDLDgTLi~~~~----------------------------------------- 142 (301)
T TIGR01684 107 VFELEEIYNLNL---PSKVFEPPHVVVFDLDSTLITDEE----------------------------------------- 142 (301)
T ss_pred cccHhhhhhccc---cccccccceEEEEecCCCCcCCCC-----------------------------------------
Confidence 344445555544 234556666999999999998752
Q ss_pred EEEEeC-ccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCC
Q 039039 151 LLVKLR-PFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDF 207 (398)
Q Consensus 151 ~~vklR-Pgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~ 207 (398)
-+.+| ||+.+.|+++. +.+.++|+|++.+.+|..+++.++..+ +| +.|++.++.
T Consensus 143 -~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~-YF-dvIIs~Gdv 198 (301)
T TIGR01684 143 -PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR-YF-DIIISGGHK 198 (301)
T ss_pred -ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc-cc-CEEEECCcc
Confidence 13577 99999999995 569999999999999999999999986 88 667766554
No 28
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.10 E-value=6.8e-06 Score=77.30 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=70.0
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+.+ .+.+.+.|.|++.+.++..+++.++-.. +| +.+++.+++.. .+.+-+++++.+++.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f-~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RC-AVLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cc-cEEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 468899999999999 5668999999999999999999987665 77 55776666543 245556666778899
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++|+|++.-.......+++.
T Consensus 171 ~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 171 CVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred EEEeCCCHHHHHHHHHCCCcE
Confidence 999999986554434445443
No 29
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.09 E-value=7.4e-06 Score=88.29 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred ecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHH
Q 039039 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDA 384 (398)
Q Consensus 313 ~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c 384 (398)
.+|.|.++||||.++. .|+++.++++++||+++++++++++.||+.+..+.|..+|.+.||+|++.+.+.+=
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~ 664 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSY 664 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHH
Confidence 4599999999999876 68899999999999999999999999999987789999999999999999888763
No 30
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.08 E-value=4.7e-06 Score=90.55 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=88.2
Q ss_pred CCcchhhhhhhheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC-CCCHHHHHHHhCCCeeeCh
Q 039039 300 GRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN-TQSETFEWAEQENKCLVHP 378 (398)
Q Consensus 300 ~~DVr~il~~~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~-~~t~K~~~A~~~gi~IV~~ 378 (398)
..+.++....++...|.||.||.+|+...++..+..++-.+||+....++..++|++... ..|+||++|++++++||+.
T Consensus 89 ~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~ 168 (811)
T KOG1929|consen 89 IRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSD 168 (811)
T ss_pred CccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccH
Confidence 345566677789999999999999999888889999999999999999999999888876 4559999999999999999
Q ss_pred hHHHHHHHhcCcCCCCCCC
Q 039039 379 QWINDAYFLWCRQPNDVSF 397 (398)
Q Consensus 379 ~WL~~c~~~~~r~~E~~Y~ 397 (398)
+|+++|..+-...+++.|.
T Consensus 169 ~w~~~s~~~~~~~~~~~~e 187 (811)
T KOG1929|consen 169 DWLFDSIEKTAVLETKPYE 187 (811)
T ss_pred HHHhhhhcccccccccccc
Confidence 9999999999999988885
No 31
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.08 E-value=1.6e-05 Score=77.21 Aligned_cols=78 Identities=31% Similarity=0.394 Sum_probs=63.6
Q ss_pred hhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeC-ccHHHHHHH
Q 039039 87 NLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR-PFVRSFLEE 165 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklR-Pgl~eFL~~ 165 (398)
.+..+.+..+|+||||||+.... -+.+| |++.+.|++
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~------------------------------------------~v~irdp~V~EtL~e 159 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE------------------------------------------PVRIRDPFVYDSLDE 159 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC------------------------------------------ccccCChhHHHHHHH
Confidence 34556777899999999998852 14577 999999999
Q ss_pred h-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCC
Q 039039 166 A-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFK 208 (398)
Q Consensus 166 ~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~ 208 (398)
+ ++.+.+.|+|+|.+++|..+++.++..+ +| +-|++.++..
T Consensus 160 LkekGikLaIvTNg~Re~v~~~Le~lgL~~-yF-DvII~~g~i~ 201 (303)
T PHA03398 160 LKERGCVLVLWSYGNREHVVHSLKETKLEG-YF-DIIICGGRKA 201 (303)
T ss_pred HHHCCCEEEEEcCCChHHHHHHHHHcCCCc-cc-cEEEECCCcc
Confidence 9 5679999999999999999999999875 78 5566665543
No 32
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.06 E-value=3.1e-06 Score=78.79 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=71.2
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
...+.||+.++|+.+. +.++|.|++.+.+++.+++..+-.. +|...+++.++... .+..-++++...++.+
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 4678899999999994 8999999999999999999887765 78556777765542 3455566666678899
Q ss_pred EEEeCCcccccCCCCceEEeC
Q 039039 226 VIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~I~ 246 (398)
++|+|++.-.......++++.
T Consensus 163 l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEE
Confidence 999999976655455666654
No 33
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=98.06 E-value=8.9e-06 Score=80.43 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=63.5
Q ss_pred cccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCC--HHHHHHHhCCCeeeChhHHHHH
Q 039039 314 ILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQS--ETFEWAEQENKCLVHPQWINDA 384 (398)
Q Consensus 314 vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t--~K~~~A~~~gi~IV~~~WL~~c 384 (398)
.+.|.+|||||-+...|.+++++++.+||++.++++++++.||+.+..+ .|.++|.+.||+|++.+=+.+=
T Consensus 232 l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~l 304 (313)
T PRK06063 232 LVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLEL 304 (313)
T ss_pred ccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHH
Confidence 4799999999999877789999999999999999999999999997655 7999999999999998765543
No 34
>PRK11587 putative phosphatase; Provisional
Probab=98.02 E-value=8.1e-06 Score=76.04 Aligned_cols=91 Identities=15% Similarity=0.008 Sum_probs=67.6
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+.+ .+.+.+.|-|++++.++..+++...-. +| ..+++.++... .+.+.+++++..++.
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~-~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--AP-EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Cc-cEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 467899999999999 578999999999999988888776642 45 45777766432 345566667777899
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++|+|++.-.......+++.
T Consensus 158 ~l~igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 158 CVVVEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred EEEEecchhhhHHHHHCCCEE
Confidence 999999985544434555543
No 35
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.99 E-value=1.5e-05 Score=74.02 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=68.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC-CccceeEEEccCCCC------ccccccccccCC-CC
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC-KYFNSRIITREDFKQ------KERKCLDLVLGQ-ES 223 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~-~~F~~ri~srd~~~~------~~~K~L~~l~~~-~~ 223 (398)
..+.||+.++|+.+ ++.+.+.|-|++.+.++..+++.++-.. .+| +.+++.++... .+.+-++++... ++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f-~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDV-DAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccC-CEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 57999999999999 5789999999999999999999998662 588 56777766432 234455666554 68
Q ss_pred cEEEEeCCcccccCCCCceEE
Q 039039 224 SIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 224 ~vvIiDD~~~vw~~~~~N~I~ 244 (398)
.+++|+|++.-.......++.
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~ 185 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAG 185 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCC
Confidence 999999998544333344444
No 36
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.98 E-value=1.3e-05 Score=66.91 Aligned_cols=73 Identities=27% Similarity=0.289 Sum_probs=55.4
Q ss_pred EEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc-cccEE
Q 039039 95 HLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR-LFEIS 173 (398)
Q Consensus 95 ~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~-~yEi~ 173 (398)
++|||+||||+....... . .....++|++.++|+++.+ .+.++
T Consensus 1 ~~vfD~D~tl~~~~~~~~----------------------------~--------~~~~~~~~~~~~~l~~l~~~g~~i~ 44 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIA----------------------------E--------IEELELYPGVKEALKELKEKGIKLA 44 (139)
T ss_pred CeEEccCCceEccCcccc----------------------------c--------cccCCcCcCHHHHHHHHHHCCCeEE
Confidence 479999999998864210 0 2335788999999999965 59999
Q ss_pred EEcCCcHHHHHHHHHHhCCCCCccceeEEEcc
Q 039039 174 VCTMGNREYATRAVKLLDPDCKYFNSRIITRE 205 (398)
Q Consensus 174 I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd 205 (398)
|.|++.+.++..+++.+.... +| ..+++.+
T Consensus 45 ivS~~~~~~~~~~~~~~~~~~-~~-~~i~~~~ 74 (139)
T cd01427 45 LATNKSRREVLELLEELGLDD-YF-DPVITSN 74 (139)
T ss_pred EEeCchHHHHHHHHHHcCCch-hh-hheeccc
Confidence 999999999999999986543 34 4455444
No 37
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.97 E-value=9.4e-06 Score=78.59 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=67.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
+.++||+.++|+.+ .+.+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+.+-+++++-+++.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f-~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YF-RWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hC-eEEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 56899999999999 5689999999999999999999987654 78 56877766543 1233344555578899
Q ss_pred EEEeCCcccccCCCCceEE
Q 039039 226 VIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~ 244 (398)
++|+|+..-......++++
T Consensus 178 l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 178 LFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred EEECCCHHHHHHHHHCCCe
Confidence 9999998554443445554
No 38
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.94 E-value=3.1e-05 Score=73.64 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=79.6
Q ss_pred hccCceEEEEeCCCceeeeecc--CC---CCchH-HHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHH
Q 039039 89 LRMRKLHLVLDLDHTLLHSRWI--GK---LTSDE-KYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSF 162 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~~~--~~---~~~~e-~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eF 162 (398)
-.++++.++|||||||++|+.. .+ .++++ .|+.++. | ...+ .....-.....|++.+|
T Consensus 59 ~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~-----~--------w~~~---~~~~~~~s~p~~~a~el 122 (237)
T TIGR01672 59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQV-----F--------WEKV---NNGWDEFSIPKEVARQL 122 (237)
T ss_pred CCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChH-----H--------HHHH---HHhcccCCcchhHHHHH
Confidence 3455669999999999999862 11 11110 1111100 0 0000 00001233455669999
Q ss_pred HHHh-hccccEEEEcCC----cHHHHHHHHHHhCCCCCccceeEEEccCCCC-ccccccccccCCCCcEEEEeCCccccc
Q 039039 163 LEEA-SRLFEISVCTMG----NREYATRAVKLLDPDCKYFNSRIITREDFKQ-KERKCLDLVLGQESSIVIVDDTESVWG 236 (398)
Q Consensus 163 L~~~-s~~yEi~I~T~g----~~~YA~~il~~LDP~~~~F~~ri~srd~~~~-~~~K~L~~l~~~~~~vvIiDD~~~vw~ 236 (398)
|+++ .+.+.++|.|+. .+.+++.+++.++-.. +| .-+++.++... ..-|. ........++.+-|+..=..
T Consensus 123 L~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f-~~i~~~d~~~~~Kp~~~--~~l~~~~i~i~vGDs~~DI~ 198 (237)
T TIGR01672 123 IDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN-PVIFAGDKPGQYQYTKT--QWIQDKNIRIHYGDSDNDIT 198 (237)
T ss_pred HHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch-he-eEEECCCCCCCCCCCHH--HHHHhCCCeEEEeCCHHHHH
Confidence 9999 678999999998 6789999999988765 77 56776665432 11111 12233455788988875444
Q ss_pred CCCCceEE
Q 039039 237 GRVENLIT 244 (398)
Q Consensus 237 ~~~~N~I~ 244 (398)
....+++.
T Consensus 199 aAk~AGi~ 206 (237)
T TIGR01672 199 AAKEAGAR 206 (237)
T ss_pred HHHHCCCC
Confidence 33344443
No 39
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.92 E-value=2.5e-05 Score=82.86 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=66.5
Q ss_pred ecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHH
Q 039039 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWIND 383 (398)
Q Consensus 313 ~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~ 383 (398)
.+|.|.++||||.++. .|.++..+++++||+++.++++++..||+....+.|..+|.+.||+|.+.+++.+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 6799999999999995 6889999999999999999999999999999888999999999999999988765
No 40
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.90 E-value=3.3e-05 Score=71.71 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=67.0
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
..+++||+.+||+.+. +.+.++|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-++++..+.+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YF-SVVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Cc-cEEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 4679999999999995 679999999999999999999998764 77 56776665432 123444555667889
Q ss_pred EEEEeCCcccccCCCCceE
Q 039039 225 IVIVDDTESVWGGRVENLI 243 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I 243 (398)
+++|+|++.-.......++
T Consensus 169 ~i~igD~~~Di~~a~~~g~ 187 (226)
T PRK13222 169 MLFVGDSRNDIQAARAAGC 187 (226)
T ss_pred eEEECCCHHHHHHHHHCCC
Confidence 9999999854443333333
No 41
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.89 E-value=1.5e-05 Score=74.81 Aligned_cols=92 Identities=20% Similarity=0.159 Sum_probs=73.3
Q ss_pred EEEeCccHHHHHHHhhcc-ccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEASRL-FEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~-yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
-++..||+.+||+.+... .-+.+-|++.+.-+..+++.++-.+ +|...+ ++++... .|.+.+.+|+.+++.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v-~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIV-TADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhc-cHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 368999999999999655 9999999999999999999998886 886644 4665443 578888888889999
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+|+|||++.--.....-++.+
T Consensus 162 CvviEDs~~Gi~Aa~aAGm~v 182 (221)
T COG0637 162 CVVVEDSPAGIQAAKAAGMRV 182 (221)
T ss_pred eEEEecchhHHHHHHHCCCEE
Confidence 999999996654434344444
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.87 E-value=4.9e-05 Score=66.43 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=58.5
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC-----ccccccccccCCCCcE
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKCLDLVLGQESSI 225 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~-----~~~K~L~~l~~~~~~v 225 (398)
.....||+.++|+.+ ++.+.++|.|++.+..+...++.+ -..+| ..+++.++... .+.+-++++..++ .+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f-~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~ 137 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYF-DLILGSDEFGAKPEPEIFLAALESLGLPP-EV 137 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcC-cEEEecCCCCCCcCHHHHHHHHHHcCCCC-CE
Confidence 344569999999999 678999999999999999999985 23477 56777776542 2334455555566 89
Q ss_pred EEEeCCc
Q 039039 226 VIVDDTE 232 (398)
Q Consensus 226 vIiDD~~ 232 (398)
++|+|++
T Consensus 138 l~iGDs~ 144 (154)
T TIGR01549 138 LHVGDNL 144 (154)
T ss_pred EEEeCCH
Confidence 9999996
No 43
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.87 E-value=8.6e-06 Score=88.53 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=84.6
Q ss_pred cchhhhhhhheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHH
Q 039039 302 DVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWI 381 (398)
Q Consensus 302 DVr~il~~~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL 381 (398)
-++++....=.++|.||.|+++..--..+.-+...+..+||.....+....||||+.+....|+..|.++++++|+|+||
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~~wL 560 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVTPDWL 560 (811)
T ss_pred hcCcchhhcccccccCceEEeeechHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccChhHH
Confidence 35566666667889999999998766567788899999999999999988899999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCC
Q 039039 382 NDAYFLWCRQPNDVSF 397 (398)
Q Consensus 382 ~~c~~~~~r~~E~~Y~ 397 (398)
.+|.++.+..+.+-|+
T Consensus 561 ~e~~rq~~~~~~e~~l 576 (811)
T KOG1929|consen 561 YECVRQNKGERNEGFL 576 (811)
T ss_pred HhhccccCcccceeec
Confidence 9999999999888774
No 44
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.84 E-value=4.7e-05 Score=82.34 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=66.3
Q ss_pred ccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHH
Q 039039 315 LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYF 386 (398)
Q Consensus 315 l~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 386 (398)
|.|.++||||.++. .|.++..+++.+||.++++++++++.||+....+.|..+|.+.||+|++.+-+.+-+.
T Consensus 591 ~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 591 LAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 88999999999976 7889999999999999999999999999998778999999999999999988877543
No 45
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.84 E-value=4.3e-05 Score=82.83 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=66.2
Q ss_pred ecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECCCCC-HHHHHHHhCCCeeeChhHHHHHHH
Q 039039 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSNTQS-ETFEWAEQENKCLVHPQWINDAYF 386 (398)
Q Consensus 313 ~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t-~K~~~A~~~gi~IV~~~WL~~c~~ 386 (398)
..|.|.++||||.+.. .|.++..+++.+||++.++++++++.||+....+ .|.++|.+.||+|++.+-+.+=+.
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 3599999999999976 7889999999999999999999999999997655 799999999999999988776443
No 46
>PLN02940 riboflavin kinase
Probab=97.84 E-value=1.9e-05 Score=80.20 Aligned_cols=91 Identities=10% Similarity=0.064 Sum_probs=68.2
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHH-HhCCCCCccceeEEEccCCCC------ccccccccccCCCC
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVK-LLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQES 223 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~-~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~ 223 (398)
.+.+.||+.++|+.+ ++.+.+.|-|++.+.++..+++ ..+-. .+| +.+++.+++.. .+...++++.-.++
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~F-d~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESF-SVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhC-CEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 356789999999999 6779999999999999998887 55544 388 56888887643 34555666666788
Q ss_pred cEEEEeCCcccccCCCCceEE
Q 039039 224 SIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 224 ~vvIiDD~~~vw~~~~~N~I~ 244 (398)
.+++|+|++.-.......+++
T Consensus 169 ~~l~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 169 NCLVIEDSLPGVMAGKAAGME 189 (382)
T ss_pred HEEEEeCCHHHHHHHHHcCCE
Confidence 999999998554433344444
No 47
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.83 E-value=6.3e-06 Score=86.46 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=70.1
Q ss_pred eecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHHhcCcC
Q 039039 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFLWCRQ 391 (398)
Q Consensus 312 ~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~ 391 (398)
...|+++++||+|..+... .+..++..|||.|.++....+||+||.+.+.+|+..|.-. .+++.|+|+.+| |++-
T Consensus 116 ~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a---w~~r 190 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA---WKHR 190 (850)
T ss_pred chhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---hcCc
Confidence 3568999999999988866 8899999999999999999999999999999998888776 999999999999 7775
Q ss_pred CCCC
Q 039039 392 PNDV 395 (398)
Q Consensus 392 ~E~~ 395 (398)
++..
T Consensus 191 n~~y 194 (850)
T KOG3524|consen 191 NDSY 194 (850)
T ss_pred chhh
Confidence 5543
No 48
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.83 E-value=4.3e-05 Score=75.49 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=60.7
Q ss_pred ecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECC---------CCCHHHHHHHhC-----CCeeeC
Q 039039 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSN---------TQSETFEWAEQE-----NKCLVH 377 (398)
Q Consensus 313 ~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~---------~~t~K~~~A~~~-----gi~IV~ 377 (398)
..|.|.++||||.+.. .|.++..+++.+||++.+++++++|.||+.. ..+.|.++|++. ||+|++
T Consensus 219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii~ 298 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFLN 298 (309)
T ss_pred ccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEec
Confidence 4699999999999954 7889999999999999999999999999984 346899999886 899998
Q ss_pred hhHHH
Q 039039 378 PQWIN 382 (398)
Q Consensus 378 ~~WL~ 382 (398)
.+=+.
T Consensus 299 E~~f~ 303 (309)
T PRK06195 299 EEEFL 303 (309)
T ss_pred HHHHH
Confidence 75333
No 49
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.81 E-value=2.8e-05 Score=72.15 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=62.8
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEcc-------C---CCC-----cccccc
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRE-------D---FKQ-----KERKCL 215 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd-------~---~~~-----~~~K~L 215 (398)
.++++||+.+||+.+. +.+.++|.|+|.+.++..+++.++-.. +|++.+.+.+ . +.. .+.+-+
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 3568999999999995 579999999999999999999987765 7765443211 0 000 112223
Q ss_pred ccccCCCCcEEEEeCCcccccCCCCceEEe
Q 039039 216 DLVLGQESSIVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 216 ~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++..+.+.++.|+|+..-.......++.|
T Consensus 162 ~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 162 RKEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HHcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 334446778999999974443323344554
No 50
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.81 E-value=2.6e-05 Score=66.65 Aligned_cols=80 Identities=15% Similarity=0.045 Sum_probs=56.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCc--------HHHHHHHHHHhCCCCCccceeEEEccCCC----Cccccccccc-
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGN--------REYATRAVKLLDPDCKYFNSRIITREDFK----QKERKCLDLV- 218 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~--------~~YA~~il~~LDP~~~~F~~ri~srd~~~----~~~~K~L~~l- 218 (398)
..+.||+.++|+++ .+.+.++|.|++. ..++.++++.++-. ++ .+++..... ..+.+-++++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACPHCRKPKPGMFLEALKRFN 99 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECCCCCCCChHHHHHHHHHcC
Confidence 45779999999999 5779999999999 88899999988754 12 233333111 1234455666
Q ss_pred cCCCCcEEEEeCC-c-cccc
Q 039039 219 LGQESSIVIVDDT-E-SVWG 236 (398)
Q Consensus 219 ~~~~~~vvIiDD~-~-~vw~ 236 (398)
.-+++.+++|+|+ . ++..
T Consensus 100 ~~~~~~~v~IGD~~~~Di~~ 119 (132)
T TIGR01662 100 EIDPEESVYVGDQDLTDLQA 119 (132)
T ss_pred CCChhheEEEcCCCcccHHH
Confidence 3678899999994 4 5554
No 51
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.78 E-value=4.2e-05 Score=82.63 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=62.1
Q ss_pred ecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhH
Q 039039 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQW 380 (398)
Q Consensus 313 ~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 380 (398)
..|.|.++||||.+.. .|.++..+++.+||++.++++++++.||+....+.|.++|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 4599999999999875 6889999999999999999999999999998777899999999999998754
No 52
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.76 E-value=2.8e-05 Score=68.12 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=67.4
Q ss_pred EEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccccEE
Q 039039 95 HLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLFEIS 173 (398)
Q Consensus 95 ~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~yEi~ 173 (398)
+|+||+||||+...... ... .+.-+++.||+.++|+.+ .+.|.++
T Consensus 2 ~~~~d~dgtl~~~~~~~-~~~---------------------------------~~~~~~~~~g~~~~l~~Lk~~g~~~~ 47 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSD-YPR---------------------------------SLDDWQLRPGAVPALLTLRAAGYTVV 47 (147)
T ss_pred eEEEeCCCceeccCCcc-cCC---------------------------------CHHHeEEcCChHHHHHHHHHCCCEEE
Confidence 68999999999987521 000 011236789999999999 6889999
Q ss_pred EEcCCcH---------------HHHHHHHHHhCCCCCccceeEEE----ccCCCC------ccccccccccCCCCcEEEE
Q 039039 174 VCTMGNR---------------EYATRAVKLLDPDCKYFNSRIIT----REDFKQ------KERKCLDLVLGQESSIVIV 228 (398)
Q Consensus 174 I~T~g~~---------------~YA~~il~~LDP~~~~F~~ri~s----rd~~~~------~~~K~L~~l~~~~~~vvIi 228 (398)
|.|++.+ .++..+++.++.. |...+++ .+.... .+.+-+++++.+++.+++|
T Consensus 48 I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~I 124 (147)
T TIGR01656 48 VVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA---VDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVV 124 (147)
T ss_pred EEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 9999884 5677777777654 1111221 121111 2344455556678899999
Q ss_pred eCCcc
Q 039039 229 DDTES 233 (398)
Q Consensus 229 DD~~~ 233 (398)
+|++.
T Consensus 125 GDs~~ 129 (147)
T TIGR01656 125 GDRLR 129 (147)
T ss_pred cCCHH
Confidence 99864
No 53
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.76 E-value=4.4e-05 Score=75.65 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=72.4
Q ss_pred CceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccc
Q 039039 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLF 170 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~y 170 (398)
.+.+||+|||+||.....-. +.+.+. ......||+.++|+.+ .+.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e----------------------~g~~~i-----------~~~~~~~~~~e~L~~L~~~Gi 48 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE----------------------DGIDNL-----------NLSPLHKTLQEKIKTLKKQGF 48 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc----------------------CCcccc-----------ccCccHHHHHHHHHHHHhCCC
Confidence 46799999999999765310 111000 1123469999999999 6789
Q ss_pred cEEEEcCCcHHHHHHHHHH----hCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCCcc
Q 039039 171 EISVCTMGNREYATRAVKL----LDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTES 233 (398)
Q Consensus 171 Ei~I~T~g~~~YA~~il~~----LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~~ 233 (398)
.+.|.|+..+..|..+++. +.... +|..-..+...-.....+-++.++-+++.+|+|||++.
T Consensus 49 ~lai~S~n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 49 LLALASKNDEDDAKKVFERRKDFILQAE-DFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred EEEEEcCCCHHHHHHHHHhCccccCcHH-HeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHH
Confidence 9999999999999999988 55543 66332222221111233344556667889999999984
No 54
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.73 E-value=0.00015 Score=61.90 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=85.4
Q ss_pred EEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccccEE
Q 039039 95 HLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLFEIS 173 (398)
Q Consensus 95 ~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~yEi~ 173 (398)
.+|||+|+||.+.-.++.+.|+ |. ..+.-.++ +..+.-+.|+|++++||+++ ...|-+.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pP-------------f~------rVs~n~i~-Ds~G~ev~L~~~v~~~l~warnsG~i~~ 61 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPP-------------FR------RVSSNTIE-DSKGREVHLFPDVKETLKWARNSGYILG 61 (164)
T ss_pred cEEEeCCCcccccccchhcCCc-------------ce------ecCcccee-cCCCeEEEEcHHHHHHHHHHHhCCcEEE
Confidence 4799999999977654433221 10 00111222 23467889999999999999 6889999
Q ss_pred EEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC--cccccccccc------CCCCcEEEEeCCcc----cccCCCCc
Q 039039 174 VCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ--KERKCLDLVL------GQESSIVIVDDTES----VWGGRVEN 241 (398)
Q Consensus 174 I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~--~~~K~L~~l~------~~~~~vvIiDD~~~----vw~~~~~N 241 (398)
.+|=.-..-|-++++.||-.. ||..-++ .-+-.. +..+-|..+. -.++.+|.+|||.. .|.. -.|
T Consensus 62 ~~sWN~~~kA~~aLral~~~~-yFhy~Vi-ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~-~G~ 138 (164)
T COG4996 62 LASWNFEDKAIKALRALDLLQ-YFHYIVI-EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEY-LGN 138 (164)
T ss_pred EeecCchHHHHHHHHHhchhh-hEEEEEe-cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHh-cCC
Confidence 999999999999999999996 9954443 221110 1111122221 24789999999984 5543 455
Q ss_pred eEEeCccc
Q 039039 242 LITVGSYD 249 (398)
Q Consensus 242 ~I~I~~y~ 249 (398)
+=-++.+.
T Consensus 139 V~~~~~~~ 146 (164)
T COG4996 139 VKCLEMWK 146 (164)
T ss_pred eeeeEeec
Confidence 54454443
No 55
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.69 E-value=8.3e-05 Score=67.11 Aligned_cols=88 Identities=13% Similarity=0.006 Sum_probs=55.8
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcH---------------HHHHHHHHHhCCCCCccceeEEEc-----------c
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNR---------------EYATRAVKLLDPDCKYFNSRIITR-----------E 205 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~---------------~YA~~il~~LDP~~~~F~~ri~sr-----------d 205 (398)
+++-||+.++|+++ ++.|.++|.|++.. .|...++..+... | ..++.. +
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-~~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---L-DGIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---c-cEEEECCCCCcccccccC
Confidence 35679999999999 57799999999985 4555555544322 3 223322 1
Q ss_pred CCCC------ccccccccccCCCCcEEEEeCCcccccCCCCceEE
Q 039039 206 DFKQ------KERKCLDLVLGQESSIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 206 ~~~~------~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~ 244 (398)
++.. .+.+-++++.-+++.+++|+|+..-......++++
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~ 145 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVK 145 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCc
Confidence 2211 34455666666889999999998443333344543
No 56
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.69 E-value=3.5e-05 Score=75.20 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=85.5
Q ss_pred cCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hcc
Q 039039 91 MRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRL 169 (398)
Q Consensus 91 ~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~ 169 (398)
.++..+++|+||||......... + +. ...-..+.||+.++|+++ ++.
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~~---~-~~----------------------------~~~~~~~~~~~~~~l~~l~~~g 203 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSPY---D-WT----------------------------KVKEDKPNPMVVELVKMYKAAG 203 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCcc---c-hh----------------------------hcccCCCChhHHHHHHHHHhCC
Confidence 34678999999999977532110 0 00 011235689999999999 567
Q ss_pred ccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccC-------CCC------ccccccccccC-CCCcEEEEeCCcccc
Q 039039 170 FEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRED-------FKQ------KERKCLDLVLG-QESSIVIVDDTESVW 235 (398)
Q Consensus 170 yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~-------~~~------~~~K~L~~l~~-~~~~vvIiDD~~~vw 235 (398)
+.++|.|+.....+..+++.|+..+.+| +.+++.+. ... ...+.|.++.. +.+.+++|||++..-
T Consensus 204 ~~i~i~T~r~~~~~~~~l~~l~~~~~~f-~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~ 282 (300)
T PHA02530 204 YEIIVVSGRDGVCEEDTVEWLRQTDIWF-DDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVV 282 (300)
T ss_pred CEEEEEeCCChhhHHHHHHHHHHcCCch-hhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHH
Confidence 9999999999999999999999988788 45666652 111 12334455444 568999999999766
Q ss_pred cCCCCceEEe
Q 039039 236 GGRVENLITV 245 (398)
Q Consensus 236 ~~~~~N~I~I 245 (398)
.....++|++
T Consensus 283 ~~a~~~Gi~~ 292 (300)
T PHA02530 283 DMWRRIGLEC 292 (300)
T ss_pred HHHHHhCCeE
Confidence 5555666654
No 57
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.68 E-value=1.1e-05 Score=73.67 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=62.5
Q ss_pred EEEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCC---CccceeEEEccCCCC---ccccccccccCCCCc
Q 039039 151 LLVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDC---KYFNSRIITREDFKQ---KERKCLDLVLGQESS 224 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~---~~F~~ri~srd~~~~---~~~K~L~~l~~~~~~ 224 (398)
-.+++.||+.++|+++.+.+.+++-|++.......+.+.+...+ .+| +.+++.++... .+.+.++++. ++.
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f-~~i~~~~~~~~kp~~~~~a~~~~~--~~~ 147 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAF-SEVLMCGHDESKEKLFIKAKEKYG--DRV 147 (197)
T ss_pred HhccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcc-cEEEEeccCcccHHHHHHHHHHhC--CCc
Confidence 34668999999999998778888888877766555666664432 255 44565555432 1222333443 678
Q ss_pred EEEEeCCcccccCCCCc--eEEeCcc
Q 039039 225 IVIVDDTESVWGGRVEN--LITVGSY 248 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N--~I~I~~y 248 (398)
+|+|||+..-......+ +|++.-+
T Consensus 148 ~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 148 VCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred EEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999999766555566 7765443
No 58
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=97.65 E-value=5.5e-05 Score=80.36 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=71.0
Q ss_pred cceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC------CCCHHHHHHHhCCCeeeChhHHHHHHHhcC
Q 039039 316 MGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN------TQSETFEWAEQENKCLVHPQWINDAYFLWC 389 (398)
Q Consensus 316 ~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~------~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~ 389 (398)
+-.+.+.||..|.....+.+.|.. ++.+.+++.+||+|+.- .+|.|+..++.+|.||++.+|+.+|+...+
T Consensus 477 kk~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~ 553 (684)
T KOG4362|consen 477 KKLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRK 553 (684)
T ss_pred cceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcC
Confidence 455788999999987788888877 78888999999999984 458999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 039039 390 RQPNDVSFF 398 (398)
Q Consensus 390 r~~E~~Y~~ 398 (398)
.++|++|.+
T Consensus 554 ~~~eepfEl 562 (684)
T KOG4362|consen 554 WVSEEPFEL 562 (684)
T ss_pred CCCCCCeeE
Confidence 999999964
No 59
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.65 E-value=0.00011 Score=78.61 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=71.6
Q ss_pred eecccceeE-EecCCCCCC-chhhHHHHHHhCCEEeeecCCCccEEEE--CCCCCHHHHHHHhCCCeeeChhHHHHHHHh
Q 039039 312 SRILMGCTI-LFGDDDFEE-LPLTWSRAEEMGAICTLVTDASITHVVS--SNTQSETFEWAEQENKCLVHPQWINDAYFL 387 (398)
Q Consensus 312 ~~vl~g~~i-~fSg~~~~~-~~~l~~la~~lGa~~~~~~~~~vTHlVa--~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~ 387 (398)
..+|.|..+ ++||..... .+.+.+++..+||.++..+.+..||.|+ ....|.+..+|+++++-||+|.||.+|+..
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~~ 710 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCKK 710 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHhh
Confidence 368999998 567776665 4699999999999999999999999996 455667777888889999999999999998
Q ss_pred cCcCCCCCCC
Q 039039 388 WCRQPNDVSF 397 (398)
Q Consensus 388 ~~r~~E~~Y~ 397 (398)
.+.+|=.++.
T Consensus 711 ~~l~p~~P~~ 720 (881)
T KOG0966|consen 711 QRLLPWLPRD 720 (881)
T ss_pred hhccccccHH
Confidence 7777766653
No 60
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.64 E-value=0.00013 Score=65.18 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=61.9
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCC---------------cHHHHHHHHHHhCCCCCccceeEEE----ccCCCC--
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMG---------------NREYATRAVKLLDPDCKYFNSRIIT----REDFKQ-- 209 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g---------------~~~YA~~il~~LDP~~~~F~~ri~s----rd~~~~-- 209 (398)
.+++-||+.++|+++. +.|.++|.|+. ...++..+++.++.. |...+++ .+++..
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRK 103 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCC
Confidence 3577899999999995 57999999996 366888888888775 6444555 344432
Q ss_pred ----ccccccccccCCCCcEEEEeCCcccccCCCCceEEeCcc
Q 039039 210 ----KERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSY 248 (398)
Q Consensus 210 ----~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~~y 248 (398)
.+..-++++..+++.+++|+|+..-......++++..-+
T Consensus 104 P~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 104 PKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 122223344457889999999974232233455554433
No 61
>COG5275 BRCT domain type II [General function prediction only]
Probab=97.62 E-value=0.00015 Score=66.60 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=68.7
Q ss_pred hhhhheecccceeEEecCCCCC-CchhhHHHHHHhCCEEeeecCCCccEEEECC-CCCHHHHHHHhCCCeeeChhHHHH
Q 039039 307 LAKIRSRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASITHVVSSN-TQSETFEWAEQENKCLVHPQWIND 383 (398)
Q Consensus 307 l~~~r~~vl~g~~i~fSg~~~~-~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~-~~t~K~~~A~~~gi~IV~~~WL~~ 383 (398)
.++..+..|+|.+|+|+|+.+. .|.....++..+||.|....+..+|.||+.+ .|..|++.+++++|+++..+=+..
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~ 227 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDS 227 (276)
T ss_pred CCCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHHHHH
Confidence 5667889999999999999995 7888899999999999999999999999986 677899999999999999876654
No 62
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.59 E-value=0.00041 Score=62.23 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=57.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCC--------------------CCcc
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDF--------------------KQKE 211 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~--------------------~~~~ 211 (398)
++++||+.++|+.+ .+.+.++|.|++.+.+++.+++.++-.. +| +.+++.+.. ....
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f-~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VF-IEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-he-eEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 68999999999999 4579999999999999999999987654 67 456654321 1111
Q ss_pred cc--ccccccCC-CCcEEEEeCCcccc
Q 039039 212 RK--CLDLVLGQ-ESSIVIVDDTESVW 235 (398)
Q Consensus 212 ~K--~L~~l~~~-~~~vvIiDD~~~vw 235 (398)
.| -++++... .+.+|.|+|+..-.
T Consensus 149 ~K~~~~~~~~~~~~~~~i~iGD~~~D~ 175 (188)
T TIGR01489 149 CKGKVIHKLSEPKYQHIIYIGDGVTDV 175 (188)
T ss_pred CHHHHHHHHHhhcCceEEEECCCcchh
Confidence 23 23333334 67788898887443
No 63
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.56 E-value=0.00021 Score=64.14 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=50.6
Q ss_pred eCccHHHHHHHh-hccccEEEEcCCcHH------------HHHHHHHHhCCCCCccceeEEEccCCCC------cccccc
Q 039039 155 LRPFVRSFLEEA-SRLFEISVCTMGNRE------------YATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCL 215 (398)
Q Consensus 155 lRPgl~eFL~~~-s~~yEi~I~T~g~~~------------YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L 215 (398)
+-||+.+.|+++ .+.|.+.|.|++... ++..+++.++.. + ..+++.++... .+..-+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHHH
Confidence 559999999999 689999999998763 566777777653 2 23443333211 122234
Q ss_pred cccc--CCCCcEEEEeCCc
Q 039039 216 DLVL--GQESSIVIVDDTE 232 (398)
Q Consensus 216 ~~l~--~~~~~vvIiDD~~ 232 (398)
++++ .+++.+++|.|++
T Consensus 119 ~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 119 SQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHcCCCCCchhcEEEECCC
Confidence 4455 5778899999996
No 64
>PRK08238 hypothetical protein; Validated
Probab=97.56 E-value=0.00024 Score=74.22 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=61.4
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCc--ccccccccc--CCCCcEEEE
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQK--ERKCLDLVL--GQESSIVIV 228 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~--~~K~L~~l~--~~~~~vvIi 228 (398)
.++|++.++|+++ ++.+.++|-|++.+.+++++++.++- | +.+++.++.... ..| ..++. -+.+.++.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F-d~Vigsd~~~~~kg~~K-~~~l~~~l~~~~~~yv 145 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F-DGVFASDGTTNLKGAAK-AAALVEAFGERGFDYA 145 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C-CEEEeCCCccccCCchH-HHHHHHHhCccCeeEe
Confidence 5889999999999 78899999999999999999999853 6 567766654321 112 12221 123446777
Q ss_pred eCCc---ccccCCCCceEEeCc
Q 039039 229 DDTE---SVWGGRVENLITVGS 247 (398)
Q Consensus 229 DD~~---~vw~~~~~N~I~I~~ 247 (398)
.|+. .+|.. -+|.+.|.|
T Consensus 146 GDS~~Dlp~~~~-A~~av~Vn~ 166 (479)
T PRK08238 146 GNSAADLPVWAA-ARRAIVVGA 166 (479)
T ss_pred cCCHHHHHHHHh-CCCeEEECC
Confidence 8887 46664 467777765
No 65
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.55 E-value=0.00022 Score=64.37 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=64.7
Q ss_pred eEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccccE
Q 039039 94 LHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLFEI 172 (398)
Q Consensus 94 l~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~yEi 172 (398)
..+|||||.||..........++ |.... .. . .+ .+....-+++-|++.+.|+++ .+..+|
T Consensus 4 klvvFDLD~TlW~~~~~~~~~~P-------------f~~~~---~~-~-~v-~D~~g~~v~lypdv~~iL~~L~~~gv~l 64 (169)
T PF12689_consen 4 KLVVFDLDYTLWPPWMDTHVGPP-------------FKKIS---NG-N-VV-VDSRGEEVSLYPDVPEILQELKERGVKL 64 (169)
T ss_dssp SEEEE-STTTSSSS-TTTSS-S--------------EEE-T---TS----E-EETT--EE---TTHHHHHHHHHHCT--E
T ss_pred cEEEEcCcCCCCchhHhhccCCC-------------ceecC---CC-C-EE-EeCCCCEEEeCcCHHHHHHHHHHCCCEE
Confidence 46799999999876543221110 11000 00 0 11 223467789999999999999 579999
Q ss_pred EEEc-CCcHHHHHHHHHHhCCC---------CCccceeEEEccCCCCcccccccc-ccCCCCcEEEEeCCccc
Q 039039 173 SVCT-MGNREYATRAVKLLDPD---------CKYFNSRIITREDFKQKERKCLDL-VLGQESSIVIVDDTESV 234 (398)
Q Consensus 173 ~I~T-~g~~~YA~~il~~LDP~---------~~~F~~ri~srd~~~~~~~K~L~~-l~~~~~~vvIiDD~~~v 234 (398)
.+.| ...++.|.++++.|+.. ..+|...-+... +...+.+.|.+ .+-+.+.++.+||....
T Consensus 65 avASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 65 AVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRN 136 (169)
T ss_dssp EEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHH
T ss_pred EEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhc
Confidence 9999 56789999999999877 126644333232 22234444443 23467889999998743
No 66
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.52 E-value=0.00019 Score=81.86 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=69.3
Q ss_pred eCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcEEE
Q 039039 155 LRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSIVI 227 (398)
Q Consensus 155 lRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~vvI 227 (398)
+.||+.++|+++ ++.|.+.|.|++.+.+++.+++.++-...+| +.+++.++... .+.+.++++..+++.+|+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F-d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMF-DAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHC-CEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 579999999999 6789999999999999999999987654578 56777777653 355666777778899999
Q ss_pred EeCCcccccCCCCceE
Q 039039 228 VDDTESVWGGRVENLI 243 (398)
Q Consensus 228 iDD~~~vw~~~~~N~I 243 (398)
|+|++.-.......++
T Consensus 241 IgDs~~Di~AA~~aGm 256 (1057)
T PLN02919 241 IEDALAGVQAARAAGM 256 (1057)
T ss_pred EcCCHHHHHHHHHcCC
Confidence 9999865544334333
No 67
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.50 E-value=0.00035 Score=65.13 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=55.5
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeE-EEccC----------------CCCcccc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRI-ITRED----------------FKQKERK 213 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri-~srd~----------------~~~~~~K 213 (398)
.+.++||+.+||+.+ .+.+.++|.|+|.+.|++++++.+=+...++.+.. ++.+. |+....+
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 368999999999999 57799999999999999999988611222343322 22111 1111122
Q ss_pred ccccccCCCCcEEEEeCCcccc
Q 039039 214 CLDLVLGQESSIVIVDDTESVW 235 (398)
Q Consensus 214 ~L~~l~~~~~~vvIiDD~~~vw 235 (398)
-+..+......+|.|.|+..-.
T Consensus 152 ~l~~~~~~~~~~i~iGDs~~Di 173 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDSITDL 173 (219)
T ss_pred HHHHhccCCCCEEEEeCCHHHH
Confidence 3344445567899999987433
No 68
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.42 E-value=0.00098 Score=64.21 Aligned_cols=79 Identities=27% Similarity=0.288 Sum_probs=62.2
Q ss_pred hhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh
Q 039039 87 NLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~ 166 (398)
.+.-+.+-++|+|||.|||....... -.-|.+.+-|.++
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~~v~-----------------------------------------Ir~~~v~~sL~~L 154 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEGDVR-----------------------------------------IRDPAVYDSLREL 154 (297)
T ss_pred hccCCCCcEEEEECCCcccccCCccc-----------------------------------------cCChHHHHHHHHH
Confidence 44557788999999999998763100 1128899999999
Q ss_pred hcc-ccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCC
Q 039039 167 SRL-FEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFK 208 (398)
Q Consensus 167 s~~-yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~ 208 (398)
.+. .-+++|+.|+++|+...++.++..+ +| +-|+++....
T Consensus 155 k~~g~vLvLWSyG~~eHV~~sl~~~~L~~-~F-d~ii~~G~~~ 195 (297)
T PF05152_consen 155 KEQGCVLVLWSYGNREHVRHSLKELKLEG-YF-DIIICGGNKA 195 (297)
T ss_pred HHcCCEEEEecCCCHHHHHHHHHHhCCcc-cc-EEEEeCCccC
Confidence 655 4899999999999999999999885 89 7788776543
No 69
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.41 E-value=0.0003 Score=61.50 Aligned_cols=83 Identities=27% Similarity=0.361 Sum_probs=68.1
Q ss_pred EEEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCC
Q 039039 151 LLVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQES 223 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~ 223 (398)
....+.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+| +.+++.++.+. .+.+-++.+..+++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f-~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF-DEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC-SEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccc-ccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 46789999999999996 99999999999999999999999877 488 56777777653 24444556666789
Q ss_pred cEEEEeCCcccc
Q 039039 224 SIVIVDDTESVW 235 (398)
Q Consensus 224 ~vvIiDD~~~vw 235 (398)
.+++|||++.-.
T Consensus 152 ~~~~vgD~~~d~ 163 (176)
T PF13419_consen 152 EILFVGDSPSDV 163 (176)
T ss_dssp GEEEEESSHHHH
T ss_pred eEEEEeCCHHHH
Confidence 999999998544
No 70
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.37 E-value=0.00056 Score=61.87 Aligned_cols=77 Identities=9% Similarity=-0.088 Sum_probs=50.9
Q ss_pred EEeCccHHHHHHHhh-ccccEEEEcCCcH---------------HHHHHHHHHhCCCCCccceeEEEccC-----CCC--
Q 039039 153 VKLRPFVRSFLEEAS-RLFEISVCTMGNR---------------EYATRAVKLLDPDCKYFNSRIITRED-----FKQ-- 209 (398)
Q Consensus 153 vklRPgl~eFL~~~s-~~yEi~I~T~g~~---------------~YA~~il~~LDP~~~~F~~ri~srd~-----~~~-- 209 (398)
+.+.||+.++|+++. +.|.+.|.|++++ ++...+++.++ .+|. .++.... ...
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~f~-~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG---GRLD-GIYYCPHHPEDGCDCRK 103 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC---Cccc-eEEECCCCCCCCCcCCC
Confidence 457799999999995 5699999999873 33444454443 2353 3443321 111
Q ss_pred ----ccccccccccCCCCcEEEEeCCcc
Q 039039 210 ----KERKCLDLVLGQESSIVIVDDTES 233 (398)
Q Consensus 210 ----~~~K~L~~l~~~~~~vvIiDD~~~ 233 (398)
.+.+.+.+++.+++.+++|+|++.
T Consensus 104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~ 131 (181)
T PRK08942 104 PKPGMLLSIAERLNIDLAGSPMVGDSLR 131 (181)
T ss_pred CCHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence 244555666667899999999984
No 71
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.32 E-value=0.00026 Score=66.23 Aligned_cols=91 Identities=16% Similarity=0.111 Sum_probs=63.7
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
...+-||+.+.|+.+ ++.|.+.|.|+..+..++.+++.++-.. || .-+++-++... ....-+..++.+++.
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F-~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~ 164 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YF-DVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEE 164 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-cc-ceEEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence 356789999999999 6889999999999999999999999886 88 44665233222 112223344445568
Q ss_pred EEEEeCCcccccCCCCceEE
Q 039039 225 IVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~ 244 (398)
+++|=|+..=....+..+++
T Consensus 165 ~l~VGDs~~Di~aA~~Ag~~ 184 (220)
T COG0546 165 ALMVGDSLNDILAAKAAGVP 184 (220)
T ss_pred eEEECCCHHHHHHHHHcCCC
Confidence 99998887444333344433
No 72
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.30 E-value=0.0015 Score=63.17 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=70.5
Q ss_pred ccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hc
Q 039039 90 RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SR 168 (398)
Q Consensus 90 ~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~ 168 (398)
+.+++.+|||+|+|+++.+.. ...+...-..|..+. ...+.. .--...-||+.+||+.+ ++
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y---------~~~~~~~~~~~~~~~----w~~wv~-----~~~a~~ipGA~e~L~~L~~~ 133 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPY---------QGYQVLNNKPFDPET----WDKWVQ-----AAQAKPVAGALDFLNYANSK 133 (266)
T ss_pred CCCCCEEEEeCccccccChHH---------HHHHhcCCCcCCHHH----HHHHHH-----cCCCCcCccHHHHHHHHHHC
Confidence 578899999999999988742 000000000010000 000000 11234669999999999 77
Q ss_pred cccEEEEcCCcHHHHHHHH---HHhCCCCCccceeEEEccCCCCcccccccc--ccCCCCcEEEEeCCcccc
Q 039039 169 LFEISVCTMGNREYATRAV---KLLDPDCKYFNSRIITREDFKQKERKCLDL--VLGQESSIVIVDDTESVW 235 (398)
Q Consensus 169 ~yEi~I~T~g~~~YA~~il---~~LDP~~~~F~~ri~srd~~~~~~~K~L~~--l~~~~~~vvIiDD~~~vw 235 (398)
...++|.|+..+.+.+... +.++-.. .+.+.++.|++.. -|...+ +-..-..++.|.|+..=+
T Consensus 134 G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~-~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~Df 201 (266)
T TIGR01533 134 GVKIFYVSNRSEKEKAATLKNLKRFGFPQ-ADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLLDF 201 (266)
T ss_pred CCeEEEEeCCCcchHHHHHHHHHHcCcCC-CCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence 8999999998866666444 4444443 3346677786432 243222 223345578888875433
No 73
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.29 E-value=0.00023 Score=66.01 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=62.0
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------------ccccccccccC
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------------KERKCLDLVLG 220 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------------~~~K~L~~l~~ 220 (398)
+|.-|-+++||-.|.+.+ ..+||+|.+..|..++++|+... .| ..|.+.+-... .+.|.....+-
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cF-egii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CF-EGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hc-cceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 677778999999998777 99999999999999999999986 78 55665543321 12222222232
Q ss_pred -CCCcEEEEeCCcccccCCC
Q 039039 221 -QESSIVIVDDTESVWGGRV 239 (398)
Q Consensus 221 -~~~~vvIiDD~~~vw~~~~ 239 (398)
++.+++.+||+........
T Consensus 176 ~~p~~t~FfDDS~~NI~~ak 195 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQTAK 195 (244)
T ss_pred CCcCceEEEcCchhhHHHHH
Confidence 4899999999997765533
No 74
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.28 E-value=0.00025 Score=67.58 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=73.6
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+.+ ++.|.+.|-|++.+.+++.+++.++-.. || +.+++.++... .+.+.++++..+++.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F-d~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FF-QAVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hC-cEEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 467889999999999 6789999999999999999999998875 88 56777777543 345667777778899
Q ss_pred EEEEeCCcccccCCCCceEEeC
Q 039039 225 IVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+++|+|++.-......+++++.
T Consensus 184 ~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 184 TFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred EEEEcCCHHHHHHHHHCCCEEE
Confidence 9999999954444445566544
No 75
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.27 E-value=0.00035 Score=64.65 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=65.5
Q ss_pred EEEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCC
Q 039039 151 LLVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQES 223 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~ 223 (398)
.++.+.||+.+||+++. +.+.+.|.|++.+.++...++.++-.. +| +.+++.++.+. .+.+-+++++-+++
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f-~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FF-DAVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hc-cEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 35689999999999995 569999999999999999999998775 88 56777777653 34556667766788
Q ss_pred cEEEEeCCc
Q 039039 224 SIVIVDDTE 232 (398)
Q Consensus 224 ~vvIiDD~~ 232 (398)
.+|+|+|++
T Consensus 169 ~~~~igDs~ 177 (221)
T TIGR02253 169 EAVMVGDRL 177 (221)
T ss_pred hEEEECCCh
Confidence 999999997
No 76
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.25 E-value=0.00041 Score=76.85 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=64.4
Q ss_pred eeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC-CCCHHHHHHHhCCCeeeChhHHHHHHHhcCcCCCCCC
Q 039039 318 CTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN-TQSETFEWAEQENKCLVHPQWINDAYFLWCRQPNDVS 396 (398)
Q Consensus 318 ~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~-~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~Y 396 (398)
..+.|++... .+.+...++.+|+.+..+ ..+.||+|+.+ ..|.|...|+..|++||+++||.+|+.....+||.+|
T Consensus 660 ~~~lfs~~~~--~~~~k~~~k~lg~s~~ss-~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~y 736 (896)
T KOG2043|consen 660 IEVLFSDKND--GKNYKLAKKFLGGSVASS-DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPY 736 (896)
T ss_pred eeeeeeeccC--chhhhhHHhhccceeecc-cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccc
Confidence 3456666533 345677788888887754 46899999997 4589999999999999999999999999999999999
Q ss_pred CC
Q 039039 397 FF 398 (398)
Q Consensus 397 ~~ 398 (398)
+|
T Consensus 737 il 738 (896)
T KOG2043|consen 737 IL 738 (896)
T ss_pred cc
Confidence 75
No 77
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.21 E-value=0.00031 Score=64.54 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=73.6
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+.+.||+.++|+.+ .+.+.++|.|++.+.++..+++.++-.+ +| +.+++.++... .+.+-+++++..++.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f-~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YF-SVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC-cEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 468999999999999 5679999999999999999999998765 78 56777765432 244555666667888
Q ss_pred EEEEeCCcccccCCCCceEEeCccc
Q 039039 225 IVIVDDTESVWGGRVENLITVGSYD 249 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I~~y~ 249 (398)
+++|+|++.-.......++++....
T Consensus 161 ~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 161 MVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred eEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 9999999866654445666655443
No 78
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.19 E-value=0.00063 Score=61.21 Aligned_cols=110 Identities=19% Similarity=0.137 Sum_probs=72.0
Q ss_pred chhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHH
Q 039039 85 TKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLE 164 (398)
Q Consensus 85 ~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~ 164 (398)
...+...+-..+|+|+|+||..... ..+-||+.++|+
T Consensus 17 ~~~~~~~~v~~vv~D~Dgtl~~~~~-------------------------------------------~~~~pgv~e~L~ 53 (170)
T TIGR01668 17 IDLLKKVGIKGVVLDKDNTLVYPDH-------------------------------------------NEAYPALRDWIE 53 (170)
T ss_pred HHHHHHCCCCEEEEecCCccccCCC-------------------------------------------CCcChhHHHHHH
Confidence 3344445667889999999986531 023499999999
Q ss_pred Hhh-ccccEEEEcCCc-HHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCCc--ccccCCCC
Q 039039 165 EAS-RLFEISVCTMGN-REYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTE--SVWGGRVE 240 (398)
Q Consensus 165 ~~s-~~yEi~I~T~g~-~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~--~vw~~~~~ 240 (398)
++. +.+.++|.|++. ...+..+++.++... +++. ..-....+.+-++++..+.+.+++|+|+. |+-.. ..
T Consensus 54 ~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA-~~ 127 (170)
T TIGR01668 54 ELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPHA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG-NR 127 (170)
T ss_pred HHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcCC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH-HH
Confidence 995 569999999999 788888887765331 1100 11111133444555556788999999996 56544 23
Q ss_pred ceE
Q 039039 241 NLI 243 (398)
Q Consensus 241 N~I 243 (398)
+++
T Consensus 128 aGi 130 (170)
T TIGR01668 128 NGS 130 (170)
T ss_pred cCC
Confidence 444
No 79
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.16 E-value=0.002 Score=61.25 Aligned_cols=90 Identities=10% Similarity=-0.001 Sum_probs=58.1
Q ss_pred EEEEeCccHHHHHHHh-hccccEEEEcC----CcHHHHHHHHHHhCC-CCCccceeEEEccCCCCccccccccccCCCCc
Q 039039 151 LLVKLRPFVRSFLEEA-SRLFEISVCTM----GNREYATRAVKLLDP-DCKYFNSRIITREDFKQKERKCLDLVLGQESS 224 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~-s~~yEi~I~T~----g~~~YA~~il~~LDP-~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~ 224 (398)
.+..+.||+.+||+.+ .+.++|++-|+ ....+++.+++.++- ...+| +-+++.+.. ...-|. .. ......
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f-~vil~gd~~-~K~~K~-~~-l~~~~i 186 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMN-PVIFAGDKP-GQYTKT-QW-LKKKNI 186 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccce-eEEEcCCCC-CCCCHH-HH-HHhcCC
Confidence 4466778899999999 88999999999 457799999987765 23477 556655542 111111 11 123455
Q ss_pred EEEEeCCcccccCCCCceEE
Q 039039 225 IVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~ 244 (398)
+|+|.|+..=.......++.
T Consensus 187 ~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 187 RIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred eEEEcCCHHHHHHHHHcCCc
Confidence 88898887444333344443
No 80
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.07 E-value=0.001 Score=61.48 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=69.7
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccc-cCCCCc
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLV-LGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l-~~~~~~ 224 (398)
.++++||+.++|+++.+.+.++|-|++.+.++..+++.++-.+ +| +.+++.++.+. .+.+-++++ ...++.
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f-d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FF-DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hc-CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 3689999999999996669999999999999999999987775 88 66887776543 345566777 667889
Q ss_pred EEEEeCCc--ccccCCCCceEE
Q 039039 225 IVIVDDTE--SVWGGRVENLIT 244 (398)
Q Consensus 225 vvIiDD~~--~vw~~~~~N~I~ 244 (398)
+|+|+|++ ++-.. ..++++
T Consensus 173 ~v~igD~~~~di~~A-~~~G~~ 193 (224)
T TIGR02254 173 VLMIGDSLTADIKGG-QNAGLD 193 (224)
T ss_pred eEEECCCcHHHHHHH-HHCCCc
Confidence 99999986 44432 344543
No 81
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.07 E-value=0.00061 Score=60.73 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=59.7
Q ss_pred EEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
+.+.||+.+||+.+. +.|.++|.|++...+ ..+...++..+ +| +.+++.++... .+.+-++++..+++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f-~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LF-DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HC-CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 688999999999995 579999999999999 66666677665 78 45665555432 2334445555678999
Q ss_pred EEEeCCcccc
Q 039039 226 VIVDDTESVW 235 (398)
Q Consensus 226 vIiDD~~~vw 235 (398)
++|||++.-.
T Consensus 161 ~~vgD~~~di 170 (183)
T TIGR01509 161 LFVDDSPAGI 170 (183)
T ss_pred EEEcCCHHHH
Confidence 9999998433
No 82
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.05 E-value=0.00049 Score=62.79 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred EEEeCccHHHHHHHhhc-cccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCc
Q 039039 152 LVKLRPFVRSFLEEASR-LFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~-~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
.+++.||+.++|+++.+ .|.++|.|++...++..+++.++-.. +| +.+++.++.+. .+..-++++..+++.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~f-d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PF-DAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hh-heeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 35678999999999966 59999999999999999999987553 78 56887776543 234445566667899
Q ss_pred EEEEeCCcccc
Q 039039 225 IVIVDDTESVW 235 (398)
Q Consensus 225 vvIiDD~~~vw 235 (398)
+++|+|++.-.
T Consensus 168 ~~~vgD~~~Di 178 (198)
T TIGR01428 168 VLFVASNPWDL 178 (198)
T ss_pred EEEEeCCHHHH
Confidence 99999998433
No 83
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.03 E-value=0.00049 Score=62.13 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=66.1
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC----------ccccccccccCC
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----------KERKCLDLVLGQ 221 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~----------~~~K~L~~l~~~ 221 (398)
.+++.||+.++|+++. +.++|.|++.+.++..+++.++-.. +| +.+++.++... .+.+-+++++.+
T Consensus 82 ~~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~f-d~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CF-DGIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred hCCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hh-CeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 3467899999999997 6899999999999999999998664 88 55777765432 234445566668
Q ss_pred CCcEEEEeCCcccccCCCCceEE
Q 039039 222 ESSIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 222 ~~~vvIiDD~~~vw~~~~~N~I~ 244 (398)
++.+++|+|++.-.......+++
T Consensus 158 ~~~~l~vgD~~~di~aA~~~G~~ 180 (184)
T TIGR01993 158 PERAIFFDDSARNIAAAKALGMK 180 (184)
T ss_pred ccceEEEeCCHHHHHHHHHcCCE
Confidence 89999999998433333344443
No 84
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.96 E-value=0.001 Score=61.82 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=44.1
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEc
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITR 204 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~sr 204 (398)
+.++||+.+||+.+.+.+.++|-|+|.+.+++++++.++-+. +|.+++...
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~~ 117 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEID 117 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEEe
Confidence 468999999999997778999999999999999999998774 787766543
No 85
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.96 E-value=0.00083 Score=63.88 Aligned_cols=93 Identities=16% Similarity=-0.050 Sum_probs=71.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccC-CCCc
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLG-QESS 224 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~-~~~~ 224 (398)
+.+.||+.++|+.+ ++.+.+.|-|++++.+++.+++.++-.+ +|-+.|++.++... .+.+-++++.. +++.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 57889999999999 5679999999999999999999998776 54467888877532 34555666665 4788
Q ss_pred EEEEeCCcccccCCCCceEEeC
Q 039039 225 IVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+++|.|++.-.......++...
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~i 198 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWTV 198 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeEE
Confidence 9999999854444445555443
No 86
>PRK09449 dUMP phosphatase; Provisional
Probab=96.96 E-value=0.0013 Score=61.17 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=67.8
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccC-CCCcE
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLG-QESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~-~~~~v 225 (398)
+.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++..+ +| +.+++.++.+. .+.+-+++++. +.+.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f-d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YF-DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-Hc-CEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 568999999999998889999999999999999999988775 88 66777776543 34555666654 45789
Q ss_pred EEEeCCc--ccccCCCCceEE
Q 039039 226 VIVDDTE--SVWGGRVENLIT 244 (398)
Q Consensus 226 vIiDD~~--~vw~~~~~N~I~ 244 (398)
++|+|++ ++=.. ...+++
T Consensus 172 ~~vgD~~~~Di~~A-~~aG~~ 191 (224)
T PRK09449 172 LMVGDNLHSDILGG-INAGID 191 (224)
T ss_pred EEEcCCcHHHHHHH-HHCCCc
Confidence 9999996 44433 344443
No 87
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.88 E-value=0.00088 Score=62.39 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=71.3
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
..+.||+.++|+.+ .+.|.++|.|++.+.+++.+++.++-.+ +| +.++++++... .+..-+++++..++.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f-~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YF-DALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cc-cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 56889999999999 5779999999999999999999988775 78 56777776532 3444556666678999
Q ss_pred EEEeCCcccccCCCCceEEe
Q 039039 226 VIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~I 245 (398)
++|+|+..-.......+++.
T Consensus 169 ~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred EEEcCChhhHHHHHHcCCEE
Confidence 99999997665544555544
No 88
>PRK06769 hypothetical protein; Validated
Probab=96.88 E-value=0.002 Score=58.08 Aligned_cols=89 Identities=12% Similarity=-0.000 Sum_probs=52.2
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHH-----HHHHHHhCCCCCccceeEEEcc----CCCC------cccccccc
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYA-----TRAVKLLDPDCKYFNSRIITRE----DFKQ------KERKCLDL 217 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA-----~~il~~LDP~~~~F~~ri~srd----~~~~------~~~K~L~~ 217 (398)
.+-||+.++|+++ .+.|.+.|.|++....+ ......+...| |.+.+++-. +... .+.+-+++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 5679999999999 56799999999875210 12222233222 223233322 1111 34555666
Q ss_pred ccCCCCcEEEEeCCcccccCCCCceEE
Q 039039 218 VLGQESSIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 218 l~~~~~~vvIiDD~~~vw~~~~~N~I~ 244 (398)
+..+++.+++|+|++.-.......++.
T Consensus 106 l~~~p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 106 HGLDLTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 666889999999998433222334443
No 89
>PLN02954 phosphoserine phosphatase
Probab=96.81 E-value=0.0022 Score=59.64 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=41.7
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC-CccceeEE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC-KYFNSRII 202 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~-~~F~~ri~ 202 (398)
..++||+.++|+.+ .+.+.++|-|++.+.+++.+++.++-.. .+|.+.+.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 46889999999999 5679999999999999999999987652 36765444
No 90
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.74 E-value=0.0011 Score=68.02 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=64.1
Q ss_pred eecccceeEEecCCCCCCchhhHHHHHHhCCEEeeec----------CCCccEEEECCCCCHHHHHHHhCCCeeeChhHH
Q 039039 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVT----------DASITHVVSSNTQSETFEWAEQENKCLVHPQWI 381 (398)
Q Consensus 312 ~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~----------~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL 381 (398)
+.+|+|+++.++.-.|. ..|.-++.++||.|+++- +..+||=|+-.++-.- .-.|..-|-|+|+
T Consensus 325 kslF~glkFfl~reVPr--esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~----~v~gR~YvQPQWv 398 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR--ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQT----SVIGRTYVQPQWV 398 (570)
T ss_pred HHHhhcceeeeeccCch--HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccc----eeeeeeeecchhh
Confidence 46899999999988774 467778999999998872 4568999998765210 1247789999999
Q ss_pred HHHHHhcCcCCCCCCC
Q 039039 382 NDAYFLWCRQPNDVSF 397 (398)
Q Consensus 382 ~~c~~~~~r~~E~~Y~ 397 (398)
+||+-...++|=+.|+
T Consensus 399 fDsvNar~llpt~~Y~ 414 (570)
T KOG2481|consen 399 FDSVNARLLLPTEKYF 414 (570)
T ss_pred hhhccchhhccHhhhC
Confidence 9999999999988885
No 91
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.73 E-value=0.0069 Score=60.97 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=66.2
Q ss_pred CceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhh-ccc
Q 039039 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF 170 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s-~~y 170 (398)
+|..|+||-||||+..... .|.. + ....+.+.||+.++|+++. +.|
T Consensus 1 ~~k~l~lDrDgtl~~~~~~-------~y~~------------~--------------~~~~~~l~pGV~e~L~~Lk~~G~ 47 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT-------DFQV------------D--------------SLDKLAFEPGVIPALLKLQKAGY 47 (354)
T ss_pred CCcEEEEeCCCCccCCCCc-------cccc------------c--------------CcccceECcCHHHHHHHHHhCCC
Confidence 4678999999999987531 0100 0 1234688999999999995 679
Q ss_pred cEEEEcCC---------------cHHHHHHHHHHhCCCCCccceeEEEc----cCCCCc------cccccccccCCCCcE
Q 039039 171 EISVCTMG---------------NREYATRAVKLLDPDCKYFNSRIITR----EDFKQK------ERKCLDLVLGQESSI 225 (398)
Q Consensus 171 Ei~I~T~g---------------~~~YA~~il~~LDP~~~~F~~ri~sr----d~~~~~------~~K~L~~l~~~~~~v 225 (398)
.++|.|++ .+.++..+++.++- +|..-+++- ++|... ...-+..+.-+++.+
T Consensus 48 kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~s 124 (354)
T PRK05446 48 KLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANS 124 (354)
T ss_pred eEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 99999995 24555656665543 463323432 343321 111122234467899
Q ss_pred EEEeCCc
Q 039039 226 VIVDDTE 232 (398)
Q Consensus 226 vIiDD~~ 232 (398)
++|.|+.
T Consensus 125 vmIGDs~ 131 (354)
T PRK05446 125 YVIGDRE 131 (354)
T ss_pred EEEcCCH
Confidence 9999987
No 92
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=96.70 E-value=0.0015 Score=71.00 Aligned_cols=89 Identities=11% Similarity=0.060 Sum_probs=63.1
Q ss_pred hhhe-ecccceeEEecCCCCCCchhhHHHHHHhCCEEeeec-CCCcc-------------------------EEEECC-C
Q 039039 309 KIRS-RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVT-DASIT-------------------------HVVSSN-T 360 (398)
Q Consensus 309 ~~r~-~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~-~~~vT-------------------------HlVa~~-~ 360 (398)
+.+. .+|.||+++|++.+-. +.....-.+.+||.+.... ..--+ -||+-. -
T Consensus 919 e~~gkniFd~cvF~lTsa~~s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~ 997 (1176)
T KOG3548|consen 919 EAIGKNIFDGCVFMLTSANRS-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHY 997 (1176)
T ss_pred hhhCcchhcceeEEEeccccc-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhh
Confidence 3344 7999999999998754 2233444444777764332 11011 222221 3
Q ss_pred CCHHHHHHHhCCCeeeChhHHHHHHHhcCcCCCCCCCC
Q 039039 361 QSETFEWAEQENKCLVHPQWINDAYFLWCRQPNDVSFF 398 (398)
Q Consensus 361 ~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~Y~~ 398 (398)
.|.||..|++.||+.||+.||.+|+.+.+.+|=.+|+|
T Consensus 998 Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLL 1035 (1176)
T KOG3548|consen 998 RTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLL 1035 (1176)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcc
Confidence 47899999999999999999999999999999999986
No 93
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.62 E-value=0.0081 Score=53.64 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=94.1
Q ss_pred HHHHHHhhhcchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEE
Q 039039 75 DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVK 154 (398)
Q Consensus 75 ~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vk 154 (398)
+..+.+...+...|...+...+|+|||+|||-=.. | .
T Consensus 10 ~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~--------------------------~-----------------~ 46 (175)
T COG2179 10 KLVETVFDITPDILKAHGIKGVILDLDNTLVPWDN--------------------------P-----------------D 46 (175)
T ss_pred HHHhhHhhCCHHHHHHcCCcEEEEeccCceecccC--------------------------C-----------------C
Confidence 34456666778889999999999999999995432 1 1
Q ss_pred eCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEE-EccCCCCccccccccccCCCCcEEEEeCCc
Q 039039 155 LRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRII-TREDFKQKERKCLDLVLGQESSIVIVDDTE 232 (398)
Q Consensus 155 lRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~-srd~~~~~~~K~L~~l~~~~~~vvIiDD~~ 232 (398)
.-|-+++-+.++ .+.-.++|.++.++.=+..++..||-.. |+ .+.-.+...-|.|..+.-+.+.|++|-|.-
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f------i~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL 120 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF------IYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQL 120 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce------eecccCccHHHHHHHHHHcCCChhHEEEEcchh
Confidence 127888999999 5669999999999999999999998763 22 122222334566777777889999999987
Q ss_pred --ccccCCCCc--eEEeCccc
Q 039039 233 --SVWGGRVEN--LITVGSYD 249 (398)
Q Consensus 233 --~vw~~~~~N--~I~I~~y~ 249 (398)
||...+..+ .|.|+|-.
T Consensus 121 ~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 121 FTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred hhhhhcccccCcEEEEEEEec
Confidence 788766543 58888865
No 94
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.61 E-value=0.0077 Score=63.60 Aligned_cols=107 Identities=18% Similarity=0.073 Sum_probs=69.4
Q ss_pred ccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hc
Q 039039 90 RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SR 168 (398)
Q Consensus 90 ~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~ 168 (398)
+.+..++.||+||||+.+........ .| . -|..+-||+.+.|+++ .+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~-------------------~~---~----------d~~~l~pgV~e~L~~L~~~ 212 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPK-------------------GP---D----------DWQIIFPEIPEKLKELEAD 212 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCC-------------------CH---H----------HeeecccCHHHHHHHHHHC
Confidence 45677999999999997643100000 00 0 0112459999999999 67
Q ss_pred cccEEEEcCCcH------------HHHHHHHHHhCCCCCccceeEEEccCCCCc------cccccccc----cCCCCcEE
Q 039039 169 LFEISVCTMGNR------------EYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKCLDLV----LGQESSIV 226 (398)
Q Consensus 169 ~yEi~I~T~g~~------------~YA~~il~~LDP~~~~F~~ri~srd~~~~~------~~K~L~~l----~~~~~~vv 226 (398)
.|.|+|+|+... ..+..+++.++-. | +-+++.+++..+ ...-++.+ .-+.+.++
T Consensus 213 Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---f-dviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~ 288 (526)
T TIGR01663 213 GFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---F-QVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCF 288 (526)
T ss_pred CCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---e-EEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeE
Confidence 899999999777 5688888888643 6 346666555331 11112222 24678999
Q ss_pred EEeCCc
Q 039039 227 IVDDTE 232 (398)
Q Consensus 227 IiDD~~ 232 (398)
+|-|+.
T Consensus 289 ~VGDaa 294 (526)
T TIGR01663 289 FVGDAA 294 (526)
T ss_pred EeCCcc
Confidence 999987
No 95
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.60 E-value=0.0012 Score=60.52 Aligned_cols=95 Identities=18% Similarity=0.043 Sum_probs=68.5
Q ss_pred EEEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCC
Q 039039 151 LLVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQES 223 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~ 223 (398)
.+..+.||+.++|+.+ ++.|.++|.|++.+..+...+.....-..+| +.+++.++.+. .+..-+++++.+++
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~f-d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~ 159 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAA-DHIYLSQDLGMRKPEARIYQHVLQAEGFSAA 159 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhc-CEEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence 3457899999999999 5679999999999887766544321123478 56777777654 35566677777889
Q ss_pred cEEEEeCCcccccCCCCceEEeC
Q 039039 224 SIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 224 ~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
.+++|||++.-.......+++..
T Consensus 160 ~~l~vgD~~~di~aA~~aG~~~i 182 (199)
T PRK09456 160 DAVFFDDNADNIEAANALGITSI 182 (199)
T ss_pred HeEEeCCCHHHHHHHHHcCCEEE
Confidence 99999999865544445666653
No 96
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.50 E-value=0.0043 Score=54.85 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=70.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCC
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDT 231 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~ 231 (398)
+.++|+. -++++ .+.+.++|.|++.+..+..+++.+.... +|.. ...-.....+-++++.-+++.++.|-|+
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~----~~~k~~~~~~~~~~~~~~~~~~~~vGDs 101 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQG----QSNKLIAFSDILEKLALAPENVAYIGDD 101 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEec----ccchHHHHHHHHHHcCCCHHHEEEECCC
Confidence 4677776 67888 5689999999999999999999988664 5532 1111112223334444567889999888
Q ss_pred cccccCCCCceEEeCccccccCCCCCCCccccccccCCCcchHHHHHHHHHHHHH
Q 039039 232 ESVWGGRVENLITVGSYDFFKGKKKNDCKSYSEQMSDESESDGALANILRALKAV 286 (398)
Q Consensus 232 ~~vw~~~~~N~I~I~~y~ff~~~~~~~~~sl~~~~~d~~~~D~~L~~l~~~L~~i 286 (398)
..=...-...++.+....-+.. .++.+...-+....|+.+..+.+.+..+
T Consensus 102 ~~D~~~~~~ag~~~~v~~~~~~-----~~~~a~~i~~~~~~~g~~~~~~~~~~~~ 151 (154)
T TIGR01670 102 LIDWPVMEKVGLSVAVADAHPL-----LIPRADYVTRIAGGRGAVREVCELLLLA 151 (154)
T ss_pred HHHHHHHHHCCCeEecCCcCHH-----HHHhCCEEecCCCCCcHHHHHHHHHHHh
Confidence 7544333334444322220000 0111111123345577777777766544
No 97
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.49 E-value=0.0016 Score=58.34 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=63.9
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
+.+.||+.++|+.+ ...+.+.|.|++ .+++.+++.++-.+ +| +.+++.++... .+.+-++++...++.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f-~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YF-DAIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HC-CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 67899999999999 457999999988 78999999887765 78 45666665432 2344455566677899
Q ss_pred EEEeCCcccccCCCCceEE
Q 039039 226 VIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~ 244 (398)
|+|+|++.-......++++
T Consensus 163 v~IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 163 VVFEDALAGVQAARAAGMF 181 (185)
T ss_pred EEEeCcHhhHHHHHHCCCe
Confidence 9999998544433344443
No 98
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.46 E-value=0.0049 Score=57.09 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=67.2
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
.+..-|++.++|+++.+.|.++|.|+|...++...++.+. -..+| +.+++.++.+. .+..-+++++.+++.+
T Consensus 97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~F-d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYF-DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhh-heEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 4788899999999997669999999999999999999998 44589 56777777663 3455566777778999
Q ss_pred EEEeCCcccc
Q 039039 226 VIVDDTESVW 235 (398)
Q Consensus 226 vIiDD~~~vw 235 (398)
+.|||+...-
T Consensus 175 l~VgD~~~~d 184 (229)
T COG1011 175 LFVGDSLEND 184 (229)
T ss_pred EEECCChhhh
Confidence 9999998543
No 99
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.46 E-value=0.0047 Score=58.52 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=51.4
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHH--HHHHHhCCCCCccceeEEEccCCCCccccc-cccccCCCCcEEEEeCCc
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYAT--RAVKLLDPDCKYFNSRIITREDFKQKERKC-LDLVLGQESSIVIVDDTE 232 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~--~il~~LDP~~~~F~~ri~srd~~~~~~~K~-L~~l~~~~~~vvIiDD~~ 232 (398)
||+.++|+++ ++.+.++|.|++++..++ +.++.++....+| +.|++.++....+... ++++......+++|-|++
T Consensus 27 pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~-~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 27 PGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP-EMIISSGEIAVQMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc-ceEEccHHHHHHHHHhhhhhccCCCceEEEeCCcc
Confidence 9999999999 578999999999998877 6778777663256 5677766543222221 223333456677777754
No 100
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.40 E-value=0.0042 Score=59.72 Aligned_cols=92 Identities=20% Similarity=0.071 Sum_probs=69.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCC-CCc
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQ-ESS 224 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~-~~~ 224 (398)
+.+-||+.++|+.+ .+.+.+.|-|++.+..+..+++.+.-.+ +|.+.|++.++... .+.+-+++++.. ++.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 57889999999999 5689999999999999999999877665 54367887776542 345556666654 588
Q ss_pred EEEEeCCcccccCCCCceEEe
Q 039039 225 IVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I 245 (398)
+++|+|++.-.......+++.
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEE
Confidence 999999985554444555544
No 101
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.23 E-value=0.0048 Score=60.21 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=66.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccce-eEEEccCCCC------ccccccccccCCCCc
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNS-RIITREDFKQ------KERKCLDLVLGQESS 224 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~-ri~srd~~~~------~~~K~L~~l~~~~~~ 224 (398)
+++.||+.++|+.+ .+.|.++|.|++++.++..+++.+.-.+ +|.. .+++.+++.. .+.+-+++++.+++.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 57899999999999 5689999999999999999998763111 3322 2335555432 234455666667889
Q ss_pred EEEEeCCcccccCCCCceEEeC
Q 039039 225 IVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 225 vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
+++|+|++.-+.....+++++.
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEEE
Confidence 9999999976655455555543
No 102
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.22 E-value=0.0032 Score=56.40 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=62.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
.++.||+.++|+.+ ++.+.+.|-|++. .+..+++.++-.. +| +.+++.++-.. .+.+-++++.-+++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f-~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YF-DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hC-cEEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 46789999999999 5779999999875 3577888887664 78 55666665332 3455566666678899
Q ss_pred EEEeCCcccccCCCCceEE
Q 039039 226 VIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~ 244 (398)
|+|+|++.-......++++
T Consensus 162 v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 162 IGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred EEEecCHHHHHHHHHcCCE
Confidence 9999998544333344443
No 103
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.21 E-value=0.012 Score=53.65 Aligned_cols=77 Identities=17% Similarity=0.049 Sum_probs=60.4
Q ss_pred EeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC-----ccccccccccCCCCcEEE
Q 039039 154 KLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKCLDLVLGQESSIVI 227 (398)
Q Consensus 154 klRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~-----~~~K~L~~l~~~~~~vvI 227 (398)
+..|+..++|+.+. +.+.+.|.|++.+.+++.+++.++-.. +| +.+++.++... .+.+.+++++.+++.+++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f-~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LF-PVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hC-CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 45567799999995 579999999999999999999998774 88 56777766432 234445566667889999
Q ss_pred EeCCc
Q 039039 228 VDDTE 232 (398)
Q Consensus 228 iDD~~ 232 (398)
|+|++
T Consensus 184 vGD~~ 188 (197)
T TIGR01548 184 VGDTV 188 (197)
T ss_pred EeCCH
Confidence 99987
No 104
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0043 Score=61.91 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=69.0
Q ss_pred CCcchhhhhhhhe---ecccceeEEecCCCCCCchhhHHHHHHhCCEEee-----------ecCCCccEEEECCCCCHHH
Q 039039 300 GRDVRSCLAKIRS---RILMGCTILFGDDDFEELPLTWSRAEEMGAICTL-----------VTDASITHVVSSNTQSETF 365 (398)
Q Consensus 300 ~~DVr~il~~~r~---~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~-----------~~~~~vTHlVa~~~~t~K~ 365 (398)
..|.......+-+ .+|+|.++.+|.-+|.. .|.-++.++||.|.. +++..+||-|+-++--
T Consensus 333 n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~d--sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~--- 407 (591)
T COG5163 333 NKDIMEMVSKPCSSLKSLFSGFKFYISREVPGD--SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVM--- 407 (591)
T ss_pred chhhhhhccCcCcchhhhhhceEEEEeccccch--HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhh---
Confidence 3466665555544 57999999999988753 456668899998843 4577899999977631
Q ss_pred HHHHhCCCeeeChhHHHHHHHhcCcCCCCCCC
Q 039039 366 EWAEQENKCLVHPQWINDAYFLWCRQPNDVSF 397 (398)
Q Consensus 366 ~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~Y~ 397 (398)
.-+-.|..-|.|+||++|+-.+.+.+-+.|.
T Consensus 408 -~~kvegrtYiQPQw~fDsiNkG~l~~~~~Y~ 438 (591)
T COG5163 408 -KNKVEGRTYIQPQWLFDSINKGKLACVENYC 438 (591)
T ss_pred -hhhhcceeeechHHHHhhhccccchhhhhcc
Confidence 1223588899999999999999998888874
No 105
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.009 Score=55.87 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=44.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRII 202 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~ 202 (398)
++++||+.+.++.+ +..+.++|.|.|-..+++++++.|..+. .+++++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 89999999999999 6789999999999999999999999886 6766655
No 106
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=96.06 E-value=0.0087 Score=56.34 Aligned_cols=98 Identities=9% Similarity=0.031 Sum_probs=71.4
Q ss_pred eEEEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhC-CCCCccceeEEEccC-CCC------ccccccccccC
Q 039039 150 VLLVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLD-PDCKYFNSRIITRED-FKQ------KERKCLDLVLG 220 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LD-P~~~~F~~ri~srd~-~~~------~~~K~L~~l~~ 220 (398)
.-..++-||+.++++.+ ++.-.+.++|.+++..++..++.+. +-. .|++-++.-+. +.. .|.+.+++++.
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~-~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~ 166 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK-NFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGV 166 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH-hcCCCeecCCccccCCCCCchHHHHHHHhcCC
Confidence 45678889999999999 7889999999998888888777764 553 67665551122 111 46788888876
Q ss_pred CC-CcEEEEeCCcccccCCC---CceEEeCcc
Q 039039 221 QE-SSIVIVDDTESVWGGRV---ENLITVGSY 248 (398)
Q Consensus 221 ~~-~~vvIiDD~~~vw~~~~---~N~I~I~~y 248 (398)
.+ +.+++++|++....... -++|-|..+
T Consensus 167 ~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~ 198 (222)
T KOG2914|consen 167 PPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP 198 (222)
T ss_pred CCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence 66 99999999997664432 356666554
No 107
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.02 E-value=0.0064 Score=57.22 Aligned_cols=92 Identities=16% Similarity=0.066 Sum_probs=64.5
Q ss_pred EEEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhC---CCCCccceeEEEccCCC----CccccccccccCCC
Q 039039 151 LLVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLD---PDCKYFNSRIITREDFK----QKERKCLDLVLGQE 222 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LD---P~~~~F~~ri~srd~~~----~~~~K~L~~l~~~~ 222 (398)
....+.||+.++|+++ ++.+.++|+|++++.+...+++..+ -. .+|.. +|....+. ..+.+-+++++.++
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcCh
Confidence 3456889999999999 6789999999999999999887753 22 25633 34322111 14566677777788
Q ss_pred CcEEEEeCCcccccCCCCceEE
Q 039039 223 SSIVIVDDTESVWGGRVENLIT 244 (398)
Q Consensus 223 ~~vvIiDD~~~vw~~~~~N~I~ 244 (398)
+.+++|+|+..-.......+++
T Consensus 170 ~e~lfVgDs~~Di~AA~~AG~~ 191 (220)
T TIGR01691 170 REILFLSDIINELDAARKAGLH 191 (220)
T ss_pred hHEEEEeCCHHHHHHHHHcCCE
Confidence 9999999998655443344443
No 108
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.02 E-value=0.012 Score=53.77 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=58.2
Q ss_pred EEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
+++-||+.++|+++. +.|.+.|.|++.+.+ ..+++.++-.+ +| +.+++.++.+. .+.+-++.++.+++.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~f-d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 180 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YF-DFVVTSYEVGAEKPDPKIFQEALERAGISPEEA 180 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hc-ceEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence 367899999999996 569999999998764 77777776554 78 55776666542 2444556666688999
Q ss_pred EEEeCCc
Q 039039 226 VIVDDTE 232 (398)
Q Consensus 226 vIiDD~~ 232 (398)
++|+|++
T Consensus 181 ~~IgD~~ 187 (203)
T TIGR02252 181 LHIGDSL 187 (203)
T ss_pred EEECCCc
Confidence 9999986
No 109
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.97 E-value=0.0029 Score=58.27 Aligned_cols=92 Identities=18% Similarity=0.039 Sum_probs=61.0
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHH--HHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCC
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREY--ATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQE 222 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~Y--A~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~ 222 (398)
.+++.||+.++|+.+. +.|.++|.|++...+ +...+..++-. .+| +.+++.++... .+.+-+++++.++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~f-d~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALF-DAVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhC-CEEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 4678999999999995 579999999997655 32222222222 478 55665555432 3455566666678
Q ss_pred CcEEEEeCCcccccCCCCceEEe
Q 039039 223 SSIVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 223 ~~vvIiDD~~~vw~~~~~N~I~I 245 (398)
+.+++|||++.-.......+++.
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEE
Confidence 88999999986554434445544
No 110
>PLN02811 hydrolase
Probab=95.76 E-value=0.0067 Score=56.50 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=62.4
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHH-HHhCCCCCccceeEEEcc--CCCC------cccccccccc---
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAV-KLLDPDCKYFNSRIITRE--DFKQ------KERKCLDLVL--- 219 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il-~~LDP~~~~F~~ri~srd--~~~~------~~~K~L~~l~--- 219 (398)
+.+.||+.++|+.+ ...|.+.|-|++.+.+....+ +..... .+| +.+++.+ ++.. .+.+-++++.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f-~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLM-HHVVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhC-CEEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 56789999999999 568999999999987665433 222222 367 5677777 5432 3455566664
Q ss_pred CCCCcEEEEeCCcccccCCCCceEEe
Q 039039 220 GQESSIVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 220 ~~~~~vvIiDD~~~vw~~~~~N~I~I 245 (398)
..++.+|+|+|+..-.......++++
T Consensus 155 ~~~~~~v~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 155 VDPGKVLVFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred CCccceEEEeccHhhHHHHHHCCCeE
Confidence 56789999999986554444444443
No 111
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.71 E-value=0.011 Score=53.42 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=58.9
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC---c------ccc--c----cc
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---K------ERK--C----LD 216 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~---~------~~K--~----L~ 216 (398)
+.++||+.++|+.+ ++.+.++|.|++.+.+++.+++.++... +|...+.+.+.... . ..| - ++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 57899999999999 5789999999999999999999998764 77666654432110 0 011 1 12
Q ss_pred cccCCCCcEEEEeCCcccc
Q 039039 217 LVLGQESSIVIVDDTESVW 235 (398)
Q Consensus 217 ~l~~~~~~vvIiDD~~~vw 235 (398)
++..+.+.+++|.|+..-.
T Consensus 158 ~~~~~~~~~i~iGDs~~D~ 176 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDL 176 (201)
T ss_pred HhCCCHHHEEEEcCCHhHH
Confidence 2334567899999997433
No 112
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.67 E-value=0.0041 Score=55.39 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=59.0
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcE
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSI 225 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~v 225 (398)
.+.+.||+.++|+. +.|.|++.+.++..+++.+.-.. +| +.+++.++.+. .+.+-+++++.+++.+
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~f-d~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YF-DRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HH-hhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 35689999999993 78999999999999999987654 78 45787877543 3556667777788999
Q ss_pred EEEeCCc
Q 039039 226 VIVDDTE 232 (398)
Q Consensus 226 vIiDD~~ 232 (398)
++|+|++
T Consensus 160 l~vgD~~ 166 (175)
T TIGR01493 160 LMVAAHQ 166 (175)
T ss_pred EeEecCh
Confidence 9999996
No 113
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.65 E-value=0.011 Score=61.41 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=66.4
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC-----ccccccccccCCCCcE
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKCLDLVLGQESSI 225 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~-----~~~K~L~~l~~~~~~v 225 (398)
.+++.||+.++|+++ ++.+.+.|.|++.+.++..+++.++-.. || +.+++.++... .+.+-++++ +++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f-~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV-TETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hc-ceeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 367899999999999 5789999999999999999999998775 88 55777776432 223333333 35789
Q ss_pred EEEeCCcccccCCCCceEEe
Q 039039 226 VIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~I~I 245 (398)
++|.|++.-.......++.+
T Consensus 404 v~VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 404 AVVGDRLSDINAAKDNGLIA 423 (459)
T ss_pred EEEeCCHHHHHHHHHCCCeE
Confidence 99999985444334455443
No 114
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.62 E-value=0.015 Score=57.94 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=59.8
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEcc---------CCCC-----ccccc-c
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRE---------DFKQ-----KERKC-L 215 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd---------~~~~-----~~~K~-L 215 (398)
.+.++||+.++|+.+ +..+.+.|.|.|...+++.+++.++-.. .|.+.+-..+ +... ...+. +
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 367899999999999 5679999999999999999999887653 3332221111 1111 01111 2
Q ss_pred ccccCCCCcEEEEeCCcccccCCCCceEEe
Q 039039 216 DLVLGQESSIVIVDDTESVWGGRVENLITV 245 (398)
Q Consensus 216 ~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I 245 (398)
++++-+++.++.|-|...=.+.-...++.|
T Consensus 258 ~~lgi~~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHcCCChhhEEEEECCHHHHHHHHHCCCeE
Confidence 233446788999999985444323344444
No 115
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=95.54 E-value=0.0045 Score=65.65 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=78.0
Q ss_pred hhhhhhhheecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHH
Q 039039 304 RSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWIND 383 (398)
Q Consensus 304 r~il~~~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~ 383 (398)
+......|..+|.|+.++|-|+-..+...+....+.-||.+.. =+..+||||.....+.-.-.|...+..+|..+|.|-
T Consensus 200 ~~f~d~hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~ 278 (850)
T KOG3524|consen 200 PCFVDKHRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWV 278 (850)
T ss_pred cchhhhhccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeecccceEE
Confidence 3455667889999999999998776667888888999999998 678999999987665443445556778999999999
Q ss_pred HHHhcCcCCCCCCCC
Q 039039 384 AYFLWCRQPNDVSFF 398 (398)
Q Consensus 384 c~~~~~r~~E~~Y~~ 398 (398)
++....+.-|..|++
T Consensus 279 siq~g~~a~e~~yl~ 293 (850)
T KOG3524|consen 279 SIQRGCCAIEDNYLL 293 (850)
T ss_pred EEecchhccccceec
Confidence 999999999999975
No 116
>PTZ00445 p36-lilke protein; Provisional
Probab=95.32 E-value=0.015 Score=54.10 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=53.0
Q ss_pred cCHHHHHHHhhhcchhhhccCceEEEEeCCCcee--eeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccc
Q 039039 72 YSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLL--HSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDN 149 (398)
Q Consensus 72 vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLi--hs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~ 149 (398)
+|..++.+. -.+.|.+.+=..+++|||+||| ||... ..+. + ...
T Consensus 25 ~~~~~~~~~---~v~~L~~~GIk~Va~D~DnTlI~~HsgG~--~~~~-~----------------------------~~~ 70 (219)
T PTZ00445 25 LNPHESADK---FVDLLNECGIKVIASDFDLTMITKHSGGY--IDPD-N----------------------------DDI 70 (219)
T ss_pred CCHHHHHHH---HHHHHHHcCCeEEEecchhhhhhhhcccc--cCCC-c----------------------------chh
Confidence 455665433 2344667788899999999998 55532 1110 0 001
Q ss_pred eEEEEeCccHHHHHHHh-hccccEEEEcCCcHHH
Q 039039 150 VLLVKLRPFVRSFLEEA-SRLFEISVCTMGNREY 182 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~Y 182 (398)
.+....+|.+.++++++ ...+.|+|-|.+.+.-
T Consensus 71 ~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 71 RVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred hhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 34457899999999999 5789999999998865
No 117
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.13 E-value=0.054 Score=50.22 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=41.8
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEE
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRII 202 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~ 202 (398)
.+.+|||+.+||+.+. ..+.++|.|+|.+.|++++++.+.+...++++++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 4789999999999995 57999999999999999999998654444554433
No 118
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.85 E-value=0.051 Score=44.61 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=23.9
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcH----HHHHHH
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNR----EYATRA 186 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~----~YA~~i 186 (398)
||+.+||+.+ .....+++.|+++. .|++..
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 9999999999 55699999999984 555554
No 119
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=94.76 E-value=0.059 Score=49.13 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=55.5
Q ss_pred EEEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEcc-------CCCCcccc--ccccccCCC
Q 039039 152 LVKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRE-------DFKQKERK--CLDLVLGQE 222 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd-------~~~~~~~K--~L~~l~~~~ 222 (398)
.+.+.||+.+||+.+.+.+.++|.|++.+.+++.+++.++-.. +|.+.+...+ +......| -+..+....
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 4567899999999996559999999999999999999988664 7755443221 11111111 122233345
Q ss_pred CcEEEEeCCcc
Q 039039 223 SSIVIVDDTES 233 (398)
Q Consensus 223 ~~vvIiDD~~~ 233 (398)
..++.|.|+..
T Consensus 145 ~~~v~iGDs~~ 155 (205)
T PRK13582 145 YRVIAAGDSYN 155 (205)
T ss_pred CeEEEEeCCHH
Confidence 67999999974
No 120
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.68 E-value=0.071 Score=51.87 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=62.1
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhC---CCCCccceeEEEccCCCC---------ccccc--c-
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLD---PDCKYFNSRIITREDFKQ---------KERKC--L- 215 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LD---P~~~~F~~ri~srd~~~~---------~~~K~--L- 215 (398)
-+.+|||+.+||+.+ .....++|+|+|...+++.+++.++ |....+++++...++... .+-|. +
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 578999999999999 6779999999999999999999754 343455555543332211 11121 1
Q ss_pred ----cccc--CCCCcEEEEeCCcc-cccC----CCCceEEe
Q 039039 216 ----DLVL--GQESSIVIVDDTES-VWGG----RVENLITV 245 (398)
Q Consensus 216 ----~~l~--~~~~~vvIiDD~~~-vw~~----~~~N~I~I 245 (398)
+.+. .+.+.+|+|.|+.. .... +.+|.|.|
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i 239 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI 239 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE
Confidence 1122 35678999999884 3221 23466776
No 121
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=94.61 E-value=0.069 Score=45.87 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=37.6
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHHH------------HHHHHhCCCCCccceeEEEcc
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYAT------------RAVKLLDPDCKYFNSRIITRE 205 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~------------~il~~LDP~~~~F~~ri~srd 205 (398)
...|.+.+.|+++ .+.+++++.|+=...... .+.+.|+-.+--| +.|+-|.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeCC
Confidence 4678999999998 789999999988877766 6677776665333 4555443
No 122
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=94.49 E-value=0.045 Score=49.76 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=47.4
Q ss_pred hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCCcccccCCCCceEEeC
Q 039039 167 SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
.+.+++.|.|+.....+..+++.+.-.. +|.. .++-.....+-++.+..+.+.++.|-|+..=.......++.+.
T Consensus 62 ~~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 62 TSGIEVAIITGRKSKLVEDRMTTLGITH-LYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred HCCCEEEEEeCCCcHHHHHHHHHcCCce-eecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 4789999999999999999999987653 5521 1111112233344455567889999888743333233455443
No 123
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.33 E-value=0.042 Score=48.99 Aligned_cols=52 Identities=27% Similarity=0.223 Sum_probs=33.7
Q ss_pred EEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccccEE
Q 039039 95 HLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLFEIS 173 (398)
Q Consensus 95 ~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~yEi~ 173 (398)
++.||||||||.+..... |. ..| .=+..+-|++.+-|+++ .+.|.|+
T Consensus 2 ia~fD~DgTLi~~~s~~~-----------------f~--~~~-------------~D~~~~~~~v~~~L~~l~~~Gy~Iv 49 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKK-----------------FP--KDP-------------DDWKFFPPGVPEALRELHKKGYKIV 49 (159)
T ss_dssp EEEE-SCTTTEE-STSTT-----------------S---SST-------------CGGEEC-TTHHHHHHHHHHTTEEEE
T ss_pred EEEEeCCCCccCCCCCCc-----------------Cc--CCH-------------HHhhhcchhHHHHHHHHHhcCCeEE
Confidence 678999999999975211 10 001 01223557899999999 6799999
Q ss_pred EEcCC
Q 039039 174 VCTMG 178 (398)
Q Consensus 174 I~T~g 178 (398)
|+|+.
T Consensus 50 IvTNQ 54 (159)
T PF08645_consen 50 IVTNQ 54 (159)
T ss_dssp EEEE-
T ss_pred EEeCc
Confidence 99986
No 124
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.06 E-value=0.11 Score=50.01 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=31.8
Q ss_pred ccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 157 PFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 157 Pgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
|...+.|+++. +.+.++|.|.-....+..+++.++...
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 66788889984 569999999999999999999887553
No 125
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=93.98 E-value=0.12 Score=49.20 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=50.9
Q ss_pred CceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hccc
Q 039039 92 RKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLF 170 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~~y 170 (398)
....+++||||||+.+.. ...|...+.|+++ ++..
T Consensus 2 ~~kli~~DlDGTLl~~~~--------------------------------------------~i~~~~~~al~~~~~~g~ 37 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK--------------------------------------------TISPETKEALARLREKGV 37 (264)
T ss_pred CeeEEEEcCCCCccCCCC--------------------------------------------ccCHHHHHHHHHHHHCCC
Confidence 356789999999999863 1457888889988 8999
Q ss_pred cEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 171 EISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 171 Ei~I~T~g~~~YA~~il~~LDP~~ 194 (398)
.++|.|.-....+.++++.|..++
T Consensus 38 ~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 38 KVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred EEEEECCCChHHHHHHHHHcCCCc
Confidence 999999999999999999999886
No 126
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=93.62 E-value=0.11 Score=48.09 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=30.5
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
|...+.|+++ ++...++|.|.-+...+..+++.+.-.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred HHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 6677888888 589999999999999999999876543
No 127
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.86 E-value=0.2 Score=49.76 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=26.1
Q ss_pred ccHHHHHHHhhc-----cccEEEEcCCc----HHHHHHHHHHhC
Q 039039 157 PFVRSFLEEASR-----LFEISVCTMGN----REYATRAVKLLD 191 (398)
Q Consensus 157 Pgl~eFL~~~s~-----~yEi~I~T~g~----~~YA~~il~~LD 191 (398)
||+.++++.+.. ...+.+.|+++ +.+|+.+.+.++
T Consensus 19 ~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG 62 (321)
T TIGR01456 19 AGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLG 62 (321)
T ss_pred HHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcC
Confidence 888888888864 78888888775 567777756554
No 128
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.73 E-value=0.24 Score=46.60 Aligned_cols=37 Identities=22% Similarity=0.087 Sum_probs=29.0
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
|...++|+++ .+...+++.|.-++.-+..+++.++..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 5577888888 456889999988888888888877643
No 129
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.62 E-value=0.24 Score=44.61 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=71.4
Q ss_pred HHHHhhhcchh--hhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEE
Q 039039 77 ISRLKKRNTKN--LLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVK 154 (398)
Q Consensus 77 a~~~~~~~~~~--ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vk 154 (398)
...+..-+.+. |.+.+=..||||+|+||..-.. -.
T Consensus 23 V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~-------------------------------------------~~ 59 (168)
T PF09419_consen 23 VPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYE-------------------------------------------DE 59 (168)
T ss_pred cCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCc-------------------------------------------Cc
Confidence 34444555555 7778888999999999974432 02
Q ss_pred eCccHHHHHHHhhccc-c--EEEEcCC-------cHHHHHHHHHHhCCCCCccceeEEEccCCCCcccccccccc-----
Q 039039 155 LRPFVRSFLEEASRLF-E--ISVCTMG-------NREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVL----- 219 (398)
Q Consensus 155 lRPgl~eFL~~~s~~y-E--i~I~T~g-------~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~----- 219 (398)
+-|-+.+.++++.+.| + +.|++++ ...=|+.+.+.|... .|.++- ..- ....+-+..+.
T Consensus 60 i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h~~--kKP--~~~~~i~~~~~~~~~~ 133 (168)
T PF09419_consen 60 IPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRHRA--KKP--GCFREILKYFKCQKVV 133 (168)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEeCC--CCC--ccHHHHHHHHhhccCC
Confidence 3377888889986655 3 9999998 467788888888744 232221 111 10111112221
Q ss_pred CCCCcEEEEeCCc--ccccCCC
Q 039039 220 GQESSIVIVDDTE--SVWGGRV 239 (398)
Q Consensus 220 ~~~~~vvIiDD~~--~vw~~~~ 239 (398)
..++.+++|.|+- |++..+.
T Consensus 134 ~~p~eiavIGDrl~TDVl~gN~ 155 (168)
T PF09419_consen 134 TSPSEIAVIGDRLFTDVLMGNR 155 (168)
T ss_pred CCchhEEEEcchHHHHHHHhhc
Confidence 2478999999997 6776543
No 130
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=92.59 E-value=0.25 Score=45.74 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 159 VRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 159 l~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
..+.|+++ .+...+++.|.-....+..+++.+...
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 67888888 567899999999999999999988644
No 131
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.53 E-value=0.24 Score=47.00 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.3
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
|...+.|+++ .+.+.++|.|.-+...+..+++.++...
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 5667777887 5679999999999888888888887663
No 132
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.24 E-value=0.34 Score=46.55 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=22.3
Q ss_pred HHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 159 VRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 159 l~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
..+-|+++ .+...++|.|.-....+..+++.|+.+
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 34455555 455777777777777777777776543
No 133
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=92.09 E-value=0.16 Score=47.88 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=59.2
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC------ccccccccccCCCCcEE
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKCLDLVLGQESSIV 226 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~------~~~K~L~~l~~~~~~vv 226 (398)
+.+-||+.++|+.+.+.|.+.|.|+|+.. ++..+-. .+| +.+++.++... .+.+-+++++.+++.++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~f-d~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYF-EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhh-ceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 56679999999999877999999999875 2444433 378 55776655432 34455566666788999
Q ss_pred EEeCCc--ccccCCCCceEEe
Q 039039 227 IVDDTE--SVWGGRVENLITV 245 (398)
Q Consensus 227 IiDD~~--~vw~~~~~N~I~I 245 (398)
+|.|++ |+-.. ..++++.
T Consensus 185 ~VGD~~~~Di~~A-~~aG~~~ 204 (238)
T PRK10748 185 HVGDDLTTDVAGA-IRCGMQA 204 (238)
T ss_pred EEcCCcHHHHHHH-HHCCCeE
Confidence 998873 66654 3455543
No 134
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=92.08 E-value=0.31 Score=45.00 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=30.8
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
|...+-|+++ .+.+.+++.|.-+...+..+++.|+..+
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 6667777777 5668999999998888899988888764
No 135
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=92.07 E-value=0.31 Score=43.06 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=42.3
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRII 202 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~ 202 (398)
+.++||+.++|+.+ +..+.++|.|++.+.|++.+++.++... +|+.++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 56899999999999 6779999999999999999999987663 6766554
No 136
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=92.00 E-value=0.35 Score=46.11 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=26.0
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
|...+-|+++ .+.+.++|.|.-....+..+++.++.+
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 4445666766 456788888877777777777777654
No 137
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.82 E-value=0.41 Score=42.53 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=27.1
Q ss_pred eCccHHHHHHHh-hccccEEEEcCCcHHHHH---HHHHH
Q 039039 155 LRPFVRSFLEEA-SRLFEISVCTMGNREYAT---RAVKL 189 (398)
Q Consensus 155 lRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~---~il~~ 189 (398)
..|++.++++++ .+.|.+++.|.-....+. +.+..
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 369999999999 578888888888776665 44444
No 138
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.38 E-value=0.52 Score=44.84 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 159 VRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 159 l~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
..+-|+++ .+...++|.|.-....+..+++.|+..+
T Consensus 25 ~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 25 SLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 34445555 3456666666666666666666665543
No 139
>PLN02645 phosphoglycolate phosphatase
Probab=91.38 E-value=0.23 Score=49.05 Aligned_cols=75 Identities=9% Similarity=0.026 Sum_probs=43.4
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC-CccceeEEEccCCCCccccccccccCCCCcEEEEeCCcc
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC-KYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTES 233 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~-~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~~ 233 (398)
||+.++|+++ .+...+++.|+.+..-...+++.|.--| ....+.|++.......+.+.... .....|.+++....
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~~--~~~~~V~viG~~~~ 123 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSINF--PKDKKVYVIGEEGI 123 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhcc--CCCCEEEEEcCHHH
Confidence 8999999999 6789999999988555455554433222 11235566554332223332211 11235777776554
No 140
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=91.29 E-value=0.18 Score=47.85 Aligned_cols=94 Identities=20% Similarity=0.157 Sum_probs=49.7
Q ss_pred cccCHHHHHHHhhhcchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccc
Q 039039 70 LRYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDN 149 (398)
Q Consensus 70 l~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~ 149 (398)
|.+-.-..+.+...+.-..-+.++..+|+|||+|+++.....+ | +.-.-..|..+ ..+.|.-
T Consensus 56 L~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqg------y---~v~nnk~f~pe----~Wd~wV~----- 117 (274)
T COG2503 56 LYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQG------Y---QVLNNKGFTPE----TWDKWVQ----- 117 (274)
T ss_pred HHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccc------h---hhhcCCCCCcc----chHHHHh-----
Confidence 3333333444444444455667888999999999999875321 1 11111122111 0010100
Q ss_pred eEEEEeCccHHHHHHHh-hccccEEEEcCCcHH
Q 039039 150 VLLVKLRPFVRSFLEEA-SRLFEISVCTMGNRE 181 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~ 181 (398)
.---+.=||+.|||+.+ ++.-.|+--|+-+++
T Consensus 118 a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~ 150 (274)
T COG2503 118 AKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQE 150 (274)
T ss_pred hcccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence 11235669999999999 455555544444443
No 141
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=90.91 E-value=0.56 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.8
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
|...+-|+++ .+...++|.|.-+...+..+++.++..+
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 5556666666 3567788888877777777777777654
No 142
>PRK10444 UMP phosphatase; Provisional
Probab=90.69 E-value=0.42 Score=45.67 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=24.9
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLD 191 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LD 191 (398)
||..+|++.+ ++...+++.|+.+..=+..+++.|.
T Consensus 20 p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 20 PGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 7788888887 4577888888877765555555553
No 143
>PLN02887 hydrolase family protein
Probab=90.66 E-value=0.45 Score=51.12 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=51.3
Q ss_pred cCHHHHHHHhhhcchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceE
Q 039039 72 YSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVL 151 (398)
Q Consensus 72 vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~ 151 (398)
.+.+.....++....|.++.+...+++||||||+++.. .+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~iKLIa~DLDGTLLn~d~--~I-------------------------------------- 326 (580)
T PLN02887 287 DQLEKSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKS--QI-------------------------------------- 326 (580)
T ss_pred cccccccchhhhcchhhhccCccEEEEeCCCCCCCCCC--cc--------------------------------------
Confidence 33334444455555666777777899999999998742 11
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
-|...+-|+++ .+...++|.|.=...-+..+++.++..
T Consensus 327 ----s~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 327 ----SETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ----CHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 13344556666 566778888877777777777777643
No 144
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=90.61 E-value=1.1 Score=42.57 Aligned_cols=129 Identities=12% Similarity=-0.087 Sum_probs=70.7
Q ss_pred hccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-h
Q 039039 89 LRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-S 167 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s 167 (398)
-..+|..+|||+|+|++..... ...+....+.|.... -..+.. .---..-|++.+|++.+ +
T Consensus 73 ~~dg~~A~V~DIDET~LsN~py---------~~~~~~g~~~~~~~~----~~~wv~-----~~~apaip~al~l~~~l~~ 134 (229)
T TIGR01675 73 SGDGMDAWIFDVDDTLLSNIPY---------YKKHGYGTEKTDPTA----FWLWLG-----KGAAPALPEGLKLYQKIIE 134 (229)
T ss_pred cCCCCcEEEEccccccccCHHH---------HHHhccCCCcCCHHH----HHHHHH-----cCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988741 111110000110000 000000 00113559999999998 7
Q ss_pred ccccEEEEcCCcHHHHHHHHHHhCCCCCccc-eeEEEccC--CCC--cccccccc--c-cCCCCcEEEEeCCccccc
Q 039039 168 RLFEISVCTMGNREYATRAVKLLDPDCKYFN-SRIITRED--FKQ--KERKCLDL--V-LGQESSIVIVDDTESVWG 236 (398)
Q Consensus 168 ~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~-~ri~srd~--~~~--~~~K~L~~--l-~~~~~~vvIiDD~~~vw~ 236 (398)
+.++|++.|.=+........+.|--.| +-+ ++++=|.. ... .-.|+-.| + ..+-..+..|+|...-+.
T Consensus 135 ~G~~Vf~lTGR~e~~r~~T~~nL~~~G-~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 135 LGIKIFLLSGRWEELRNATLDNLINAG-FTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHHcC-CCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 899999999988777555555554344 111 45555752 111 11143222 1 234567778888865443
No 145
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=90.56 E-value=0.53 Score=51.33 Aligned_cols=144 Identities=18% Similarity=0.221 Sum_probs=80.7
Q ss_pred eEEeCccccccCCCCCCCcccccc---ccCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcchhhh-h----h--hh
Q 039039 242 LITVGSYDFFKGKKKNDCKSYSEQ---MSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCL-A----K--IR 311 (398)
Q Consensus 242 ~I~I~~y~ff~~~~~~~~~sl~~~---~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il-~----~--~r 311 (398)
+++..|+++|.-+... ..-+++. ..|.-.+|-.|..+.++|..+.+ +.|-.+.+ . . .|
T Consensus 713 l~p~~P~~~fh~~e~~-~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~-----------S~ds~~~~~~~~~~~~e~r 780 (881)
T KOG0966|consen 713 LLPWLPRDLFHATEKG-REKLAKEVDCLGDSYENDIDLEQLKKVLSGIKK-----------SQDSLPPMGASEKDSLERR 780 (881)
T ss_pred ccccccHHHHhhCchH-HHHHHHHHhhhcchhhhhccHHHHHHHHhhhhh-----------cccccCchhhhhhhcHHHh
Confidence 6899999888654210 0001100 11233456668888888887765 22222211 1 1 12
Q ss_pred ee-cccceeE--EecCCCCCCchhhHHHHHHhCCEEeeec------CCCccEEEECCCC--CHH--HHHHHhC--CCeee
Q 039039 312 SR-ILMGCTI--LFGDDDFEELPLTWSRAEEMGAICTLVT------DASITHVVSSNTQ--SET--FEWAEQE--NKCLV 376 (398)
Q Consensus 312 ~~-vl~g~~i--~fSg~~~~~~~~l~~la~~lGa~~~~~~------~~~vTHlVa~~~~--t~K--~~~A~~~--gi~IV 376 (398)
-. .|..+++ ..++.+......+.-.+..+|+.+...- ...+||+|+...+ +.+ -..|.+. ..+||
T Consensus 781 ~~~~~~~~~~f~~~~~~~~se~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~ 860 (881)
T KOG0966|consen 781 FSLFLSSLRMFYVLRRKLSSEEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVV 860 (881)
T ss_pred hccccccceeeecccccccHHHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhccccccc
Confidence 12 2333332 2233333322244456778899986543 3468999997322 333 2233332 34899
Q ss_pred ChhHHHHHHHhcCcCCCCCCC
Q 039039 377 HPQWINDAYFLWCRQPNDVSF 397 (398)
Q Consensus 377 ~~~WL~~c~~~~~r~~E~~Y~ 397 (398)
+|.|+.+|......+||+.|.
T Consensus 861 ~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 861 APSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred CHHHHHHhhcccccCccccCC
Confidence 999999999999999999884
No 146
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=90.04 E-value=0.53 Score=43.38 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.2
Q ss_pred EEEeCCCceeeee
Q 039039 96 LVLDLDHTLLHSR 108 (398)
Q Consensus 96 LVLDLD~TLihs~ 108 (398)
+++||||||+++.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5799999999875
No 147
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=89.92 E-value=0.69 Score=44.29 Aligned_cols=39 Identities=5% Similarity=-0.083 Sum_probs=24.9
Q ss_pred hhhHHHHHHhCCEEeee--c-------C--CCccEEEECCCCCHHHHHHH
Q 039039 331 PLTWSRAEEMGAICTLV--T-------D--ASITHVVSSNTQSETFEWAE 369 (398)
Q Consensus 331 ~~l~~la~~lGa~~~~~--~-------~--~~vTHlVa~~~~t~K~~~A~ 369 (398)
..+..+++.+|-....- + . ..+.|=||...+.+.++.+.
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A 240 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAEL 240 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhC
Confidence 38888999998543211 1 1 24667788777777776554
No 148
>PRK10976 putative hydrolase; Provisional
Probab=89.89 E-value=0.7 Score=43.99 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=12.8
Q ss_pred eEEEEeCCCceeeee
Q 039039 94 LHLVLDLDHTLLHSR 108 (398)
Q Consensus 94 l~LVLDLD~TLihs~ 108 (398)
..+++||||||+++.
T Consensus 3 kli~~DlDGTLl~~~ 17 (266)
T PRK10976 3 QVVASDLDGTLLSPD 17 (266)
T ss_pred eEEEEeCCCCCcCCC
Confidence 468999999999875
No 149
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=89.79 E-value=0.62 Score=42.42 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=29.5
Q ss_pred CccHHHHHHHhhc-cccEEEEcCCcHHHHHHHHHHhC
Q 039039 156 RPFVRSFLEEASR-LFEISVCTMGNREYATRAVKLLD 191 (398)
Q Consensus 156 RPgl~eFL~~~s~-~yEi~I~T~g~~~YA~~il~~LD 191 (398)
.|.+.+.|+++.+ ...++|-|.-+..++..+++.++
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 3778888999854 48899999999999999988753
No 150
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=89.49 E-value=0.71 Score=43.89 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.6
Q ss_pred cHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 158 FVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 158 gl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
...++++.+. +...+++.|.-+...+..+++.++..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 4678888884 56889999988888888888888743
No 151
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.76 E-value=0.56 Score=44.94 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.1
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHH
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNRE 181 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~ 181 (398)
||..++|+++ ++...+++.|+.+..
T Consensus 24 ~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 24 PGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 8999999999 467999999976544
No 152
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=88.43 E-value=0.71 Score=44.67 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=19.4
Q ss_pred ccHHHHHHHh-hccccEEEEcCCc
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGN 179 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~ 179 (398)
||+.++|+++ ++...+++.|+.+
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 8899999999 4678899999854
No 153
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=87.87 E-value=1.3 Score=44.85 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=64.2
Q ss_pred cccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCC--CHHHHHHHhCCCeeeChhHHHHHHHh
Q 039039 314 ILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQ--SETFEWAEQENKCLVHPQWINDAYFL 387 (398)
Q Consensus 314 vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~--t~K~~~A~~~gi~IV~~~WL~~c~~~ 387 (398)
.-+|..|+|++-....+..|...+...|-.|+..++..+.-|||.... +.|...|.+.||++++-.=+.+.+..
T Consensus 294 lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~~ 369 (377)
T PRK05601 294 LVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVER 369 (377)
T ss_pred cccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHHH
Confidence 568999999998887777888889999999999999999999998754 67999999999999998877777653
No 154
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=87.56 E-value=0.71 Score=46.34 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=46.4
Q ss_pred ceEEEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHh-C-----C-CCCccceeEEEcc
Q 039039 149 NVLLVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLL-D-----P-DCKYFNSRIITRE 205 (398)
Q Consensus 149 ~~~~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~L-D-----P-~~~~F~~ri~srd 205 (398)
..-|+.+-||+.++|+++ +..+.+.|-|++...|++.+++.+ + + ...|| +.|++..
T Consensus 179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yF-D~IIt~a 242 (343)
T TIGR02244 179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYF-DVVIVDA 242 (343)
T ss_pred HHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhC-cEEEeCC
Confidence 467888899999999999 677999999999999999999997 6 2 35688 5566443
No 155
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.25 E-value=1.1 Score=40.61 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=42.5
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEE
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRII 202 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~ 202 (398)
.+++||+.++|+.+ ++.+.++|-|++.+.+++.+++.++-+. +|+.++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 46899999999999 5679999999999999999999998765 7766554
No 156
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=86.85 E-value=1.1 Score=42.68 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=17.6
Q ss_pred ccHHHHHHHh-hccccEEEEcCCc
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGN 179 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~ 179 (398)
|+..++|+++ .+...+++.|+++
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 6788888888 5678888888743
No 157
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=86.46 E-value=0.97 Score=43.85 Aligned_cols=50 Identities=20% Similarity=0.107 Sum_probs=33.4
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHH----HHHHHHHHhCCCCCccceeEEEccCCC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNRE----YATRAVKLLDPDCKYFNSRIITREDFK 208 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~----YA~~il~~LDP~~~~F~~ri~srd~~~ 208 (398)
||+.+||+++ ++.-.+++-||+++. |+.++..+..++-. .++|++....+
T Consensus 27 pga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~--~~~i~TS~~at 81 (269)
T COG0647 27 PGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT--PDDIVTSGDAT 81 (269)
T ss_pred chHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC--HHHeecHHHHH
Confidence 9999999999 566889999998865 44445443444322 25677655443
No 158
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=86.45 E-value=2.4 Score=38.75 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=61.3
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCc------------HHHHHHHHHHhCCCCCccceeEEEcc----CCCC------c
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGN------------REYATRAVKLLDPDCKYFNSRIITRE----DFKQ------K 210 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~------------~~YA~~il~~LDP~~~~F~~ri~srd----~~~~------~ 210 (398)
.+.||+.+=|..+ ...|.++|+|+.+ ..+-..+.+.|--.|.-|.+.++... .|.. .
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm 110 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGM 110 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHH
Confidence 4669999999999 7889999999933 23333466666666656755555321 1322 1
Q ss_pred cccccccccCCCCcEEEEeCCcccccCCCCceEEeCccccccCCC
Q 039039 211 ERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVGSYDFFKGKK 255 (398)
Q Consensus 211 ~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~~y~ff~~~~ 255 (398)
...-++....+++..++|=|+..=-......+|+ |+.|..+.+
T Consensus 111 ~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~--~~~~~~~~~ 153 (181)
T COG0241 111 LLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK--GVLVLTGIG 153 (181)
T ss_pred HHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC--ceEEEcCcc
Confidence 2222344456889999999996333222233444 777766654
No 159
>PTZ00174 phosphomannomutase; Provisional
Probab=86.44 E-value=1.4 Score=41.70 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceeeeec
Q 039039 93 KLHLVLDLDHTLLHSRW 109 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~~ 109 (398)
...+++||||||+++..
T Consensus 5 ~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN 21 (247)
T ss_pred CeEEEEECcCCCcCCCC
Confidence 45789999999998864
No 160
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=85.81 E-value=1.2 Score=40.15 Aligned_cols=77 Identities=9% Similarity=0.007 Sum_probs=50.2
Q ss_pred hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCCcccccCCCCceEEeC
Q 039039 167 SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTESVWGGRVENLITVG 246 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~~vw~~~~~N~I~I~ 246 (398)
.+.+.+.|.|+....++..+++.+.-.. +|.. + . .-...+..-++++.-+++.++.|.|+..=.......++.+.
T Consensus 48 ~~Gi~laIiT~k~~~~~~~~l~~lgi~~-~f~~-~--k-pkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~a 122 (169)
T TIGR02726 48 LCGIDVAIITSKKSGAVRHRAEELKIKR-FHEG-I--K-KKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVA 122 (169)
T ss_pred HCCCEEEEEECCCcHHHHHHHHHCCCcE-EEec-C--C-CCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 4679999999999999999999997763 6632 1 1 11112223334444567889999998754433334566665
Q ss_pred cc
Q 039039 247 SY 248 (398)
Q Consensus 247 ~y 248 (398)
+-
T Consensus 123 m~ 124 (169)
T TIGR02726 123 VG 124 (169)
T ss_pred Cc
Confidence 54
No 161
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=85.28 E-value=2.6 Score=40.90 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=50.2
Q ss_pred CccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCc-cceeEEEccCCCCc-----ccccccc---ccCCCCcE
Q 039039 156 RPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKY-FNSRIITREDFKQK-----ERKCLDL---VLGQESSI 225 (398)
Q Consensus 156 RPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~-F~~ri~srd~~~~~-----~~K~L~~---l~~~~~~v 225 (398)
=|+..+|++.+ +..++|++-|.=....-+.=++.|--.| | .-++++=|+..... ..|.-.| +..+-+.+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaG-y~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv 225 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAG-YHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV 225 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcC-CCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence 38999999999 7899999999888766555555565455 3 11455557543211 1232211 22346778
Q ss_pred EEEeCCccccc
Q 039039 226 VIVDDTESVWG 236 (398)
Q Consensus 226 vIiDD~~~vw~ 236 (398)
..|+|...-+.
T Consensus 226 ~~iGDq~sDl~ 236 (275)
T TIGR01680 226 GIIGDQWNDLK 236 (275)
T ss_pred EEECCCHHhcc
Confidence 88899865554
No 162
>PLN02423 phosphomannomutase
Probab=85.12 E-value=1.6 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.4
Q ss_pred cCceEEEEeCCCceeeee
Q 039039 91 MRKLHLVLDLDHTLLHSR 108 (398)
Q Consensus 91 ~~Kl~LVLDLD~TLihs~ 108 (398)
..|+.+++||||||+++.
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 456677799999999775
No 163
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=84.66 E-value=1.8 Score=41.63 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=63.7
Q ss_pred EEEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccC-----------CCC---------
Q 039039 151 LLVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRED-----------FKQ--------- 209 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~-----------~~~--------- 209 (398)
-+...-|.+-++++.++ +..-+..+|+....|...-++.|---|.-|.+.-+ +.+ +..
T Consensus 78 ~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~GIl 156 (252)
T PF11019_consen 78 KMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSF-PEDGIISFPVFDSALSRAPSFYDGIL 156 (252)
T ss_pred ceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCcccccc-ccCcceecccccCCCCCCceeecCeE
Confidence 34567799999999995 77999999999999999888876434433433321 110 000
Q ss_pred ---ccccc------cccccCCCCcEEEEeCCcccccC----CCCceEEeCccccc
Q 039039 210 ---KERKC------LDLVLGQESSIVIVDDTESVWGG----RVENLITVGSYDFF 251 (398)
Q Consensus 210 ---~~~K~------L~~l~~~~~~vvIiDD~~~vw~~----~~~N~I~I~~y~ff 251 (398)
..-|. |+.++..++.||+|||+.+.-.. .....|..--|+|-
T Consensus 157 ft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 157 FTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred EeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 01111 23445578999999999865432 23356666666654
No 164
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=84.16 E-value=1.2 Score=42.15 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.7
Q ss_pred ccHHHHHHHh-hccccEEEEcCCc----HHHHHHHHHHh
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGN----REYATRAVKLL 190 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~----~~YA~~il~~L 190 (398)
|++.++++.+ .+.+.+.+-|+++ ..+++.+.+.+
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~ 55 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLL 55 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 7888999998 4568888888555 45666666643
No 165
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=84.06 E-value=0.53 Score=44.49 Aligned_cols=36 Identities=19% Similarity=0.004 Sum_probs=26.0
Q ss_pred eCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHh
Q 039039 155 LRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 155 lRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~L 190 (398)
.=||..+|++.+ ++.++|++-|.=....-+.-++.|
T Consensus 116 aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL 152 (229)
T PF03767_consen 116 AIPGALELYNYARSRGVKVFFITGRPESQREATEKNL 152 (229)
T ss_dssp EETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH
Confidence 339999999999 788999999976655433333333
No 166
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=83.89 E-value=0.54 Score=42.73 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=13.4
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++|||||||++|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999984
No 167
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=83.80 E-value=1.7 Score=41.98 Aligned_cols=59 Identities=14% Similarity=-0.023 Sum_probs=39.1
Q ss_pred ceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc--cc
Q 039039 93 KLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR--LF 170 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~--~y 170 (398)
++.+++|+||||++....++ + ..+-|.+.+-|+.+++ ..
T Consensus 14 ~~li~~D~DGTLl~~~~~p~---------------------~------------------~~i~~~~~~~L~~L~~~~g~ 54 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPD---------------------Q------------------VVVPDNILQGLQLLATANDG 54 (266)
T ss_pred CEEEEEecCCCCCCCCCCcc---------------------c------------------ccCCHHHHHHHHHHHhCCCC
Confidence 68899999999998653110 0 0123778888888864 56
Q ss_pred cEEEEcCCcHHHHHHHHHHh
Q 039039 171 EISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 171 Ei~I~T~g~~~YA~~il~~L 190 (398)
.++|.|.-...-+..+++.+
T Consensus 55 ~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 55 ALALISGRSMVELDALAKPY 74 (266)
T ss_pred cEEEEeCCCHHHHHHhcCcc
Confidence 67777766666666655444
No 168
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.27 E-value=2.7 Score=41.37 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=24.7
Q ss_pred HHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC
Q 039039 159 VRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC 194 (398)
Q Consensus 159 l~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~ 194 (398)
..+-|+++ .+...+++.|.-+..=...+.+.|..+.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 45556666 4667888888777776667777776543
No 169
>PLN03017 trehalose-phosphatase
Probab=82.64 E-value=2 Score=43.52 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=45.0
Q ss_pred hhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHH
Q 039039 86 KNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE 165 (398)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~ 165 (398)
..+.+.+++.|+||+||||+--...++ ...+-|.+.+-|++
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~~p~---------------------------------------~a~i~~~~~~aL~~ 144 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVDDPD---------------------------------------KAFMSSKMRRTVKK 144 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcCCcc---------------------------------------cccCCHHHHHHHHH
Confidence 344678999999999999993321100 01233888888999
Q ss_pred hhccccEEEEcCCcHHHHHHHH
Q 039039 166 ASRLFEISVCTMGNREYATRAV 187 (398)
Q Consensus 166 ~s~~yEi~I~T~g~~~YA~~il 187 (398)
+++.+.++|-|--...-+..+.
T Consensus 145 La~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 145 LAKCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred HhcCCcEEEEeCCCHHHHHHhh
Confidence 9988999998877777666664
No 170
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=80.99 E-value=1.1 Score=42.40 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=39.7
Q ss_pred cCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhccc
Q 039039 91 MRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLF 170 (398)
Q Consensus 91 ~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~~y 170 (398)
.||..|+||+||||+-.... | -..+.=|++.+-|+++++..
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~-------------------------p--------------~~~~~~~~~~~~L~~L~~~~ 41 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPD-------------------------P--------------DAAVVSDRLLTILQKLAARP 41 (244)
T ss_pred CCcEEEEEecCccccCCcCC-------------------------C--------------cccCCCHHHHHHHHHHHhCC
Confidence 36789999999999964321 1 00133489999999998877
Q ss_pred cEEEEcCCcHHHHHHHHHHhCCC
Q 039039 171 EISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 171 Ei~I~T~g~~~YA~~il~~LDP~ 193 (398)
...|+=.+.|.+.+. ...+.|.
T Consensus 42 ~~~v~ivSGR~~~~~-~~~~~~~ 63 (244)
T TIGR00685 42 HNAIWIISGRKFLEK-WLGVKLP 63 (244)
T ss_pred CCeEEEEECCChhhc-cccCCCC
Confidence 665544445554333 3334443
No 171
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=80.84 E-value=0.78 Score=41.06 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=13.1
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++|||||||++|..
T Consensus 2 ~viFDlDGTL~ds~~ 16 (184)
T TIGR01993 2 VWFFDLDNTLYPHSA 16 (184)
T ss_pred eEEEeCCCCCCCCcc
Confidence 579999999999864
No 172
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=79.91 E-value=6.2 Score=42.30 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=51.7
Q ss_pred EEEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeC
Q 039039 152 LVKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDD 230 (398)
Q Consensus 152 ~vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD 230 (398)
.-.+|||+.++++++ ...++++|-|...+.+|+.+++.++-+ +|.. +. ......-+..+....+.+++|-|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~-~~-----p~~K~~~v~~l~~~~~~v~~VGD 474 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAE-VL-----PDDKAALIKELQEKGRVVAMVGD 474 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEcc-CC-----hHHHHHHHHHHHHcCCEEEEEeC
Confidence 346899999999999 567999999999999999999998764 4421 11 11001112223335578999988
Q ss_pred Ccc
Q 039039 231 TES 233 (398)
Q Consensus 231 ~~~ 233 (398)
...
T Consensus 475 g~n 477 (562)
T TIGR01511 475 GIN 477 (562)
T ss_pred CCc
Confidence 764
No 173
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=79.87 E-value=3.9 Score=38.53 Aligned_cols=53 Identities=15% Similarity=0.272 Sum_probs=42.2
Q ss_pred EEeCccHHHHHHHhhc--cccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCC
Q 039039 153 VKLRPFVRSFLEEASR--LFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDF 207 (398)
Q Consensus 153 vklRPgl~eFL~~~s~--~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~ 207 (398)
+..-||+-+-++.+++ -||+.|-+-+..-+.+.+++..+-.. +|. +|||.-.|
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d-~F~-~IfTNPa~ 137 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHD-LFS-EIFTNPAC 137 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHH-HHH-HHhcCCcc
Confidence 4567999998888853 38999999999999999999998764 784 67754433
No 174
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=79.50 E-value=2.8 Score=39.62 Aligned_cols=16 Identities=50% Similarity=0.688 Sum_probs=13.2
Q ss_pred ceEEEEeCCCceeeee
Q 039039 93 KLHLVLDLDHTLLHSR 108 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~ 108 (398)
++.++.||||||+++.
T Consensus 1 ~~li~tDlDGTLl~~~ 16 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHT 16 (249)
T ss_pred CeEEEEcCCCcCcCCC
Confidence 4678999999999753
No 175
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=79.47 E-value=3.9 Score=44.63 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=22.6
Q ss_pred HHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCC
Q 039039 160 RSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPD 193 (398)
Q Consensus 160 ~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~ 193 (398)
.+-|+++ .+...+++.|.-+...+..+++.|+..
T Consensus 439 ~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 439 LDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3445555 456777777777777777777777643
No 176
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=77.41 E-value=6.2 Score=35.51 Aligned_cols=78 Identities=22% Similarity=0.158 Sum_probs=56.0
Q ss_pred eEEEEeCccHHHHHHHhhc-cccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCcccc----ccccccCCCCc
Q 039039 150 VLLVKLRPFVRSFLEEASR-LFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERK----CLDLVLGQESS 224 (398)
Q Consensus 150 ~~~vklRPgl~eFL~~~s~-~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K----~L~~l~~~~~~ 224 (398)
...-.+||++.++|+++.+ .+.++|.|..++..|..+++.++... ..++++.. .....| -++.+..+.+.
T Consensus 123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~-~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVI-GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHE-TTTHHHHHHHHHHHHTCTGGG
T ss_pred eecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----cccccccc-ccccchhHHHHHHHHhcCCCE
Confidence 4555789999999999955 59999999999999999999998743 33444331 111222 23344446678
Q ss_pred EEEEeCCc
Q 039039 225 IVIVDDTE 232 (398)
Q Consensus 225 vvIiDD~~ 232 (398)
|++|-|..
T Consensus 198 v~~vGDg~ 205 (215)
T PF00702_consen 198 VAMVGDGV 205 (215)
T ss_dssp EEEEESSG
T ss_pred EEEEccCH
Confidence 99998876
No 177
>PLN02151 trehalose-phosphatase
Probab=77.15 E-value=3.9 Score=41.27 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=46.7
Q ss_pred hhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh
Q 039039 87 NLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~ 166 (398)
.+.+.+++.|+||+||||+--... | --..+-|.+.+-|+++
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~~-------------------------P--------------~~A~~~~~~~~aL~~L 132 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVDD-------------------------P--------------DRAFMSKKMRNTVRKL 132 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCCC-------------------------c--------------ccccCCHHHHHHHHHH
Confidence 345678999999999999943321 1 0123459999999999
Q ss_pred hccccEEEEcCCcHHHHHHHHH
Q 039039 167 SRLFEISVCTMGNREYATRAVK 188 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~ 188 (398)
++.+.++|-|--...-.+.++.
T Consensus 133 a~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 133 AKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred hcCCCEEEEECCCHHHHHHHcC
Confidence 9989999998877777766653
No 178
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=76.00 E-value=5.7 Score=36.41 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=36.2
Q ss_pred EEeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhC
Q 039039 153 VKLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLD 191 (398)
Q Consensus 153 vklRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LD 191 (398)
+++|||.++|.+.+ .+.-.++|-++|+..|..+++..|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 78999999999999 7889999999999999999998775
No 179
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=75.96 E-value=1.4 Score=40.51 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeeec
Q 039039 94 LHLVLDLDHTLLHSRW 109 (398)
Q Consensus 94 l~LVLDLD~TLihs~~ 109 (398)
..++|||||||+++..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 3689999999999975
No 180
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=75.65 E-value=1.6 Score=39.50 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++|||||||+++..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 589999999999864
No 181
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.18 E-value=2 Score=44.69 Aligned_cols=127 Identities=23% Similarity=0.270 Sum_probs=71.5
Q ss_pred hhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeec--cceEEEEeCccHHHHH
Q 039039 86 KNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFL 163 (398)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~--~~~~~vklRPgl~eFL 163 (398)
..+-...|.+||||||+||.-...- | | +....++... +..++ -+++|.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGVIG------e----------------d---Gv~GI~Ls~~~~G~~fk-----~fQ~~I 264 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGVIG------E----------------D---GVDGIRLSNSAEGEAFK-----TFQNFI 264 (574)
T ss_pred HHhhCcccceEEEecCCcccccccc------c----------------c---cccceeecCCCCchhHH-----HHHHHH
Confidence 3445678999999999999876531 0 1 0111111110 00111 145566
Q ss_pred HHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCC----------ccccccccccCCCCcEEEEeCCc
Q 039039 164 EEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----------KERKCLDLVLGQESSIVIVDDTE 232 (398)
Q Consensus 164 ~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~----------~~~K~L~~l~~~~~~vvIiDD~~ 232 (398)
..+ .+..=+.|.+..+..=|..+..+- | +.|+.-++-.. .-.|-...|+-+.+..|.+||.|
T Consensus 265 k~l~kqGVlLav~SKN~~~da~evF~kh-p------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p 337 (574)
T COG3882 265 KGLKKQGVLLAVCSKNTEKDAKEVFRKH-P------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNP 337 (574)
T ss_pred HHHHhccEEEEEecCCchhhHHHHHhhC-C------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCH
Confidence 666 466778999999998888877542 1 33553333221 11233344555778889999998
Q ss_pred ccccCCCCce-EEeCccc
Q 039039 233 SVWGGRVENL-ITVGSYD 249 (398)
Q Consensus 233 ~vw~~~~~N~-I~I~~y~ 249 (398)
.--..-+.++ |.|.+|.
T Consensus 338 ~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 338 AERELVKRELPVSVIEFP 355 (574)
T ss_pred HHHHHHHhcCceeeccCC
Confidence 5443322233 5565554
No 182
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=74.70 E-value=1.4 Score=39.09 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=13.5
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++||+||||+++..
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 3 AVIFDMDGVIVDTAP 17 (185)
T ss_pred eEEEcCCCcccCChH
Confidence 679999999999974
No 183
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=74.31 E-value=1.4 Score=41.81 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=14.1
Q ss_pred eEEEEeCCCceeeeec
Q 039039 94 LHLVLDLDHTLLHSRW 109 (398)
Q Consensus 94 l~LVLDLD~TLihs~~ 109 (398)
..++|||||||++|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 3689999999999974
No 184
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=74.07 E-value=1.4 Score=39.12 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++||+||||+++..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999984
No 185
>PLN02580 trehalose-phosphatase
Probab=72.87 E-value=5.7 Score=40.57 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=47.8
Q ss_pred hhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh
Q 039039 87 NLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~ 166 (398)
.+.+.+++.|+||.||||.--... | --...-|++++-|+++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~~-------------------------P--------------d~A~~s~~~~~aL~~L 153 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVDD-------------------------P--------------DRALMSDAMRSAVKNV 153 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCCC-------------------------c--------------ccccCCHHHHHHHHHH
Confidence 456779999999999999844321 1 0123448999999999
Q ss_pred hccccEEEEcCCcHHHHHHHHH
Q 039039 167 SRLFEISVCTMGNREYATRAVK 188 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~ 188 (398)
++.+.++|-|--.+.-.+..+.
T Consensus 154 a~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 154 AKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred hhCCCEEEEeCCCHHHHHHHhC
Confidence 9999999999888877776664
No 186
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=72.86 E-value=1.6 Score=38.45 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.6
Q ss_pred EEEeCCCceeeeec
Q 039039 96 LVLDLDHTLLHSRW 109 (398)
Q Consensus 96 LVLDLD~TLihs~~ 109 (398)
++|||||||+++..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 79999999999974
No 187
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=72.62 E-value=1.9 Score=41.25 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeee
Q 039039 94 LHLVLDLDHTLLHSR 108 (398)
Q Consensus 94 l~LVLDLD~TLihs~ 108 (398)
..++||+||||+++.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 478999999999985
No 188
>PRK11590 hypothetical protein; Provisional
Probab=72.60 E-value=2 Score=39.70 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=34.6
Q ss_pred EEeCccHHHHH-HHhh-ccccEEEEcCCcHHHHHHHHHHhC
Q 039039 153 VKLRPFVRSFL-EEAS-RLFEISVCTMGNREYATRAVKLLD 191 (398)
Q Consensus 153 vklRPgl~eFL-~~~s-~~yEi~I~T~g~~~YA~~il~~LD 191 (398)
+.++||+.+.| +.+. +.+.++|-|++.+.|++++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 4564 699999999999999999999876
No 189
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=72.52 E-value=1.4 Score=40.17 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=12.2
Q ss_pred EEEeCCCceeeeec
Q 039039 96 LVLDLDHTLLHSRW 109 (398)
Q Consensus 96 LVLDLD~TLihs~~ 109 (398)
+|||+||||++|..
T Consensus 1 viFD~DGTL~Ds~~ 14 (213)
T TIGR01449 1 VLFDLDGTLVDSAP 14 (213)
T ss_pred CeecCCCccccCHH
Confidence 58999999999864
No 190
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=72.05 E-value=2.1 Score=40.50 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeeeec
Q 039039 94 LHLVLDLDHTLLHSRW 109 (398)
Q Consensus 94 l~LVLDLD~TLihs~~ 109 (398)
..++||+||||+++..
T Consensus 3 k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGS 18 (253)
T ss_pred eEEEEeCCCCeecCCC
Confidence 3689999999999853
No 191
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=71.05 E-value=6.1 Score=42.07 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=56.2
Q ss_pred EEEEeCccHHHHHHHh-hccc-cEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEE
Q 039039 151 LLVKLRPFVRSFLEEA-SRLF-EISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIV 228 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~-s~~y-Ei~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIi 228 (398)
..-.+|||+.+.++++ .+.+ .++|-|...+.+|+.+++.++.+. +|.. +. .....+-++++......++++
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~~-~~-----p~~K~~~i~~l~~~~~~v~~v 431 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHAE-LL-----PEDKLEIVKELREKYGPVAMV 431 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhhc-cC-----cHHHHHHHHHHHhcCCEEEEE
Confidence 3456999999999999 5678 999999999999999999998875 6632 22 111122233344455789999
Q ss_pred eCCcccc
Q 039039 229 DDTESVW 235 (398)
Q Consensus 229 DD~~~vw 235 (398)
-|...=.
T Consensus 432 GDg~nD~ 438 (536)
T TIGR01512 432 GDGINDA 438 (536)
T ss_pred eCCHHHH
Confidence 8887433
No 192
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=70.93 E-value=7.3 Score=36.11 Aligned_cols=38 Identities=16% Similarity=-0.039 Sum_probs=33.7
Q ss_pred EEeCccHHHHHH-Hhh-ccccEEEEcCCcHHHHHHHHHHh
Q 039039 153 VKLRPFVRSFLE-EAS-RLFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 153 vklRPgl~eFL~-~~s-~~yEi~I~T~g~~~YA~~il~~L 190 (398)
+.++||+.+.|+ .+. +.+.++|-|++.+.|++++++..
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 367999999996 675 79999999999999999999773
No 193
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=70.85 E-value=5.2 Score=42.74 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=54.5
Q ss_pred EEEEeCccHHHHHHHh-hcc-ccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEE
Q 039039 151 LLVKLRPFVRSFLEEA-SRL-FEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIV 228 (398)
Q Consensus 151 ~~vklRPgl~eFL~~~-s~~-yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIi 228 (398)
....+|||+.+.|+++ ++. ++++|-|...+.+|.++++.++-+. +|. ++. .+ .-.+-++++......++++
T Consensus 381 ~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~-~~~-p~----~K~~~v~~l~~~~~~v~~v 453 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHA-ELL-PE----DKLAIVKELQEEGGVVAMV 453 (556)
T ss_pred ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eec-cCC-HH----HHHHHHHHHHHcCCEEEEE
Confidence 4456999999999999 556 9999999999999999999998864 563 221 11 0112233333345689999
Q ss_pred eCCcc
Q 039039 229 DDTES 233 (398)
Q Consensus 229 DD~~~ 233 (398)
-|...
T Consensus 454 GDg~n 458 (556)
T TIGR01525 454 GDGIN 458 (556)
T ss_pred ECChh
Confidence 88873
No 194
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=70.74 E-value=2.2 Score=40.17 Aligned_cols=16 Identities=44% Similarity=0.509 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeeec
Q 039039 94 LHLVLDLDHTLLHSRW 109 (398)
Q Consensus 94 l~LVLDLD~TLihs~~ 109 (398)
..++|||||||+++..
T Consensus 11 k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 11 SALTFDLDDTLYDNRP 26 (238)
T ss_pred eeEEEcCcccccCChH
Confidence 3789999999999964
No 195
>PRK11590 hypothetical protein; Provisional
Probab=70.27 E-value=6.3 Score=36.33 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.4
Q ss_pred CceEEEEeCCCceeeee
Q 039039 92 RKLHLVLDLDHTLLHSR 108 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~ 108 (398)
.+..++|||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 34488999999999554
No 196
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=69.19 E-value=8.7 Score=36.52 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=43.2
Q ss_pred EEEeCccHHHHHHHhh---ccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEc
Q 039039 152 LVKLRPFVRSFLEEAS---RLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITR 204 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s---~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~sr 204 (398)
-+.+-||..+|++.++ ..++++|-+.|..-|-+.|++.-+-.. +| ..|+|.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f-~~I~TN 122 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CF-SEIFTN 122 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-cc-ceEEeC
Confidence 3578899999999994 489999999999999999999988775 77 447743
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=69.04 E-value=2.1 Score=37.67 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.1
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++|||||||+++..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999974
No 198
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=68.32 E-value=2.3 Score=38.44 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.4
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++||+||||+++..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 589999999999874
No 199
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=68.14 E-value=9.4 Score=37.01 Aligned_cols=66 Identities=18% Similarity=0.049 Sum_probs=49.5
Q ss_pred cchhhhccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHH
Q 039039 84 NTKNLLRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFL 163 (398)
Q Consensus 84 ~~~~ll~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL 163 (398)
......+.+|..++||.||||.+-...+.. ...=|++.+-|
T Consensus 9 ~~~~~~~a~~~~~~lDyDGTl~~i~~~p~~---------------------------------------a~~~~~l~~lL 49 (266)
T COG1877 9 LLEPYLNARKRLLFLDYDGTLTEIVPHPEA---------------------------------------AVPDDRLLSLL 49 (266)
T ss_pred hccccccccceEEEEeccccccccccCccc---------------------------------------cCCCHHHHHHH
Confidence 355677889999999999999988753210 11227899999
Q ss_pred HHhhcccc--EEEEcCCcHHHHHHHHH
Q 039039 164 EEASRLFE--ISVCTMGNREYATRAVK 188 (398)
Q Consensus 164 ~~~s~~yE--i~I~T~g~~~YA~~il~ 188 (398)
..|+..+. ++|.|.-+..-.+..+.
T Consensus 50 ~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 50 QDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred HHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 99988888 77777777777766665
No 200
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=67.98 E-value=3 Score=40.61 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceeeee
Q 039039 93 KLHLVLDLDHTLLHSR 108 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~ 108 (398)
-..+||||||||++|.
T Consensus 40 ~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 40 PEALLFDCDGVLVETE 55 (286)
T ss_pred CcEEEEeCceeEEccc
Confidence 3478999999999998
No 201
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=67.39 E-value=2.7 Score=38.40 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=13.6
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
.++||+||||+++..
T Consensus 3 ~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 3 TLLFDLDDTILDFQA 17 (224)
T ss_pred EEEEcCcCcccccch
Confidence 689999999999975
No 202
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=67.34 E-value=2.7 Score=36.17 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=12.4
Q ss_pred EEEeCCCceeeeec
Q 039039 96 LVLDLDHTLLHSRW 109 (398)
Q Consensus 96 LVLDLD~TLihs~~ 109 (398)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999874
No 203
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=66.24 E-value=3.9 Score=37.10 Aligned_cols=77 Identities=22% Similarity=0.124 Sum_probs=40.1
Q ss_pred EEeCccHHHHHHHhhcc-ccEEEEcCCcHH-H---HHHHHHHhCCC-CCcc-ceeEEEccCCCCccccccccccCCCCcE
Q 039039 153 VKLRPFVRSFLEEASRL-FEISVCTMGNRE-Y---ATRAVKLLDPD-CKYF-NSRIITREDFKQKERKCLDLVLGQESSI 225 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~-yEi~I~T~g~~~-Y---A~~il~~LDP~-~~~F-~~ri~srd~~~~~~~K~L~~l~~~~~~v 225 (398)
.+.-||+.|.|+++.+. +++++-|+.... | +..-.+-|+-. +..+ .+.+++. .|+ .+.+|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~--~v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKT--LVGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGG--GC--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCC--eEecc----
Confidence 45569999999999766 577777776554 1 22223333321 1122 2334432 233 23333
Q ss_pred EEEeCCcccccCCCCce
Q 039039 226 VIVDDTESVWGGRVENL 242 (398)
Q Consensus 226 vIiDD~~~vw~~~~~N~ 242 (398)
++|||++.........+
T Consensus 139 vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEEESSSHHHSS-SSES
T ss_pred EEecCChHHHHhccCCC
Confidence 88999998776544444
No 204
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=65.72 E-value=3.5 Score=37.66 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.8
Q ss_pred EEEEeCCCceeeee
Q 039039 95 HLVLDLDHTLLHSR 108 (398)
Q Consensus 95 ~LVLDLD~TLihs~ 108 (398)
.++|||||||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 68999999999984
No 205
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=65.68 E-value=3.3 Score=38.19 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.0
Q ss_pred CceEEEEeCCCceeeeec
Q 039039 92 RKLHLVLDLDHTLLHSRW 109 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~ 109 (398)
+-..++||+||||+++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEP 23 (222)
T ss_pred cCcEEEEcCCCCCCcCHH
Confidence 345789999999999964
No 206
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.49 E-value=4.7 Score=38.40 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=59.0
Q ss_pred ccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCC-----CccccccccccCCCCcEEEEeC
Q 039039 157 PFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFK-----QKERKCLDLVLGQESSIVIVDD 230 (398)
Q Consensus 157 Pgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~-----~~~~K~L~~l~~~~~~vvIiDD 230 (398)
.+..++|+++ .+.+.|.|.|+..+++= .++..++-. .+|..-+.|.+... ..+++.|+++...++.+|.|||
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD 193 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGD 193 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecC
Confidence 4455999999 57789999999999887 666666666 58866566554432 2578889998888999999999
Q ss_pred Cccc
Q 039039 231 TESV 234 (398)
Q Consensus 231 ~~~v 234 (398)
+...
T Consensus 194 ~l~n 197 (237)
T KOG3085|consen 194 LLEN 197 (237)
T ss_pred cccc
Confidence 9865
No 207
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=64.72 E-value=3.9 Score=36.63 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeeee
Q 039039 94 LHLVLDLDHTLLHSR 108 (398)
Q Consensus 94 l~LVLDLD~TLihs~ 108 (398)
..+|||+||||+++.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 369999999999865
No 208
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=64.37 E-value=6.9 Score=34.68 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=38.1
Q ss_pred EeCccHH----HHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC-CccceeE
Q 039039 154 KLRPFVR----SFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC-KYFNSRI 201 (398)
Q Consensus 154 klRPgl~----eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~-~~F~~ri 201 (398)
+++|++. +||+++ +..++++|-|++.+.+++.+++.++-.. ..++.++
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred ccCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 3456666 999998 7899999999999999999999887554 2344444
No 209
>PRK09449 dUMP phosphatase; Provisional
Probab=63.41 E-value=3.4 Score=38.05 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.2
Q ss_pred eEEEEeCCCceeee
Q 039039 94 LHLVLDLDHTLLHS 107 (398)
Q Consensus 94 l~LVLDLD~TLihs 107 (398)
..++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 37899999999984
No 210
>PLN02382 probable sucrose-phosphatase
Probab=61.60 E-value=4.4 Score=41.78 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=18.2
Q ss_pred hhhccCceEEEEeCCCceeee
Q 039039 87 NLLRMRKLHLVLDLDHTLLHS 107 (398)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLihs 107 (398)
+|-...++.|+.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 566778999999999999976
No 211
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=61.05 E-value=3.6 Score=42.78 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=14.2
Q ss_pred eEEEEeCCCceeeeec
Q 039039 94 LHLVLDLDHTLLHSRW 109 (398)
Q Consensus 94 l~LVLDLD~TLihs~~ 109 (398)
..++|||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999975
No 212
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=59.54 E-value=11 Score=41.63 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=42.0
Q ss_pred ccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc-
Q 039039 90 RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR- 168 (398)
Q Consensus 90 ~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~- 168 (398)
+.++..+++|+||||+.....+. ....-|.+.+-|+++++
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~~~~---------------------------------------~~~~~~~~~~~L~~L~~d 529 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAPDPE---------------------------------------LAVPDKELRDLLRRLAAD 529 (726)
T ss_pred hccceEEEEecCccccCCCCCcc---------------------------------------cCCCCHHHHHHHHHHHcC
Confidence 46778999999999996532110 01233778888888865
Q ss_pred -cccEEEEcCCcHHHHHHHHHH
Q 039039 169 -LFEISVCTMGNREYATRAVKL 189 (398)
Q Consensus 169 -~yEi~I~T~g~~~YA~~il~~ 189 (398)
...++|-|.-+..-.++.+..
T Consensus 530 ~g~~V~ivSGR~~~~l~~~~~~ 551 (726)
T PRK14501 530 PNTDVAIISGRDRDTLERWFGD 551 (726)
T ss_pred CCCeEEEEeCCCHHHHHHHhCC
Confidence 778888888877766665543
No 213
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=58.93 E-value=29 Score=32.88 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=24.5
Q ss_pred hccccEEEEcCCcHHHHHHHHHHhCCCCCc
Q 039039 167 SRLFEISVCTMGNREYATRAVKLLDPDCKY 196 (398)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~il~~LDP~~~~ 196 (398)
...|+++..|+-++.=-...-+.|+.+|..
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p 66 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLP 66 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCc
Confidence 678999999998887777778888888743
No 214
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=53.66 E-value=6.9 Score=35.38 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.6
Q ss_pred EEEEeCCCceee
Q 039039 95 HLVLDLDHTLLH 106 (398)
Q Consensus 95 ~LVLDLD~TLih 106 (398)
.+|||+||||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 579999999993
No 215
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=52.30 E-value=18 Score=40.60 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=55.4
Q ss_pred CcchhhhhhhheecccceeEEecCCCCCC---------c-hhhHHHHHHhCCEEeeec---C---------CCccEEEEC
Q 039039 301 RDVRSCLAKIRSRILMGCTILFGDDDFEE---------L-PLTWSRAEEMGAICTLVT---D---------ASITHVVSS 358 (398)
Q Consensus 301 ~DVr~il~~~r~~vl~g~~i~fSg~~~~~---------~-~~l~~la~~lGa~~~~~~---~---------~~vTHlVa~ 358 (398)
.+-..+.+..+..-|++-.+.+.+..... . -.+|.-+.++|+.-+-+. + .-.-||++.
T Consensus 1046 ~l~~~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~ 1125 (1176)
T KOG3548|consen 1046 QLMPAIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDG 1125 (1176)
T ss_pred ccccCccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecC
Confidence 33344444445555666666555543221 1 167766666665544333 1 122366665
Q ss_pred CCCCHHHHHHHhCCCeeeChhHHHHHHHhcCcC
Q 039039 359 NTQSETFEWAEQENKCLVHPQWINDAYFLWCRQ 391 (398)
Q Consensus 359 ~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~ 391 (398)
..++.-.+.|-..+.++|+++||-+|+-...+.
T Consensus 1126 ~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1126 TFRDSVMKYADTLGAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred ccHHHHHHHHHHhCCCccChhHhheeeeccccC
Confidence 666666778888999999999999998766554
No 216
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=52.27 E-value=27 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=26.0
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHh
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~L 190 (398)
+.+||+-++.+.+ .+.|.+.=-|+-.-..|...-..|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 6789999999999 677877777765544454444333
No 217
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.85 E-value=12 Score=34.20 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=14.7
Q ss_pred CceEEEEeCCCceeeeec
Q 039039 92 RKLHLVLDLDHTLLHSRW 109 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~~ 109 (398)
.-..++||+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 345789999999999864
No 218
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=45.82 E-value=11 Score=34.18 Aligned_cols=41 Identities=10% Similarity=-0.026 Sum_probs=24.2
Q ss_pred hhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhH
Q 039039 332 LTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQW 380 (398)
Q Consensus 332 ~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~W 380 (398)
.+...++.+|. ++.-+.+|- +. ..-+..|++.|++.|...+
T Consensus 146 ~~~~~~~~~~~------~p~~~l~vg-D~-~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 146 IYQHVLQAEGF------SAADAVFFD-DN-ADNIEAANALGITSILVTD 186 (199)
T ss_pred HHHHHHHHcCC------ChhHeEEeC-CC-HHHHHHHHHcCCEEEEecC
Confidence 44456677763 333343443 32 3458888889988776554
No 219
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=45.65 E-value=9.3 Score=35.63 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=11.1
Q ss_pred EEEeCCCceeeee
Q 039039 96 LVLDLDHTLLHSR 108 (398)
Q Consensus 96 LVLDLD~TLihs~ 108 (398)
++.||||||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 6889999999854
No 220
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=43.85 E-value=12 Score=34.68 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.0
Q ss_pred ceEEEEeCCCceeeeec
Q 039039 93 KLHLVLDLDHTLLHSRW 109 (398)
Q Consensus 93 Kl~LVLDLD~TLihs~~ 109 (398)
|...+||+||||.+...
T Consensus 5 ~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDM 21 (210)
T ss_pred CcEEEEcCCCCCccCcc
Confidence 34579999999999864
No 221
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=43.59 E-value=37 Score=34.70 Aligned_cols=58 Identities=19% Similarity=0.117 Sum_probs=35.0
Q ss_pred ccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHh-hc
Q 039039 90 RMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SR 168 (398)
Q Consensus 90 ~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~-s~ 168 (398)
+......-||+|+|||.+..-. .|....+ .+.+.. |.+-.=|+++ .+
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~-----------------------------vf~~~~~--dw~~l~-~~vp~Klktl~~~ 119 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGK-----------------------------VFPKGSM--DWRILF-PEVPSKLKTLYQD 119 (422)
T ss_pred CCCcceEEEecCCceeecCCcc-----------------------------eeeccCc--cceeec-cccchhhhhhccC
Confidence 3455577899999999987521 1111111 222223 3344445566 78
Q ss_pred cccEEEEcCCc
Q 039039 169 LFEISVCTMGN 179 (398)
Q Consensus 169 ~yEi~I~T~g~ 179 (398)
.|-++|+|+..
T Consensus 120 g~~l~iftnq~ 130 (422)
T KOG2134|consen 120 GIKLFIFTNQN 130 (422)
T ss_pred CeEEEEEeccc
Confidence 89999999865
No 222
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=43.42 E-value=19 Score=31.70 Aligned_cols=28 Identities=18% Similarity=0.520 Sum_probs=24.7
Q ss_pred EEeCccHHHHHHHhhccccEEEEcCCcH
Q 039039 153 VKLRPFVRSFLEEASRLFEISVCTMGNR 180 (398)
Q Consensus 153 vklRPgl~eFL~~~s~~yEi~I~T~g~~ 180 (398)
.+.-||.++-++++.+.|+++|-|+++-
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamd 94 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMD 94 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccC
Confidence 4567999999999999999999999953
No 223
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=42.55 E-value=14 Score=35.16 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=18.5
Q ss_pred cHHHHHH-HhhccccEEEEcCCcHHHHHHHHHHh
Q 039039 158 FVRSFLE-EASRLFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 158 gl~eFL~-~~s~~yEi~I~T~g~~~YA~~il~~L 190 (398)
-+.++|+ ......-+++-|--+..-+.++++..
T Consensus 23 ~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 23 RLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp HHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred HHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 3456666 34555556666666666667776654
No 224
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.32 E-value=44 Score=31.08 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=41.7
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCC-CccceeEE
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDC-KYFNSRII 202 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~-~~F~~ri~ 202 (398)
.+-||++|+-..+ ++...+++-+-|-+..+..|...|+... ..|.+++.
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 4679999999999 7889999999999999999999998653 35555554
No 225
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=41.82 E-value=18 Score=40.89 Aligned_cols=20 Identities=30% Similarity=0.389 Sum_probs=15.9
Q ss_pred hccCceEEEEeCCCceeeee
Q 039039 89 LRMRKLHLVLDLDHTLLHSR 108 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~ 108 (398)
.+.++..|+||+||||+...
T Consensus 592 ~~~~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 592 KRTTTRAILLDYDGTLMPQA 611 (854)
T ss_pred HhhcCeEEEEecCCcccCCc
Confidence 35577889999999999543
No 226
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=40.10 E-value=13 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=12.0
Q ss_pred EEEeCCCceeeeec
Q 039039 96 LVLDLDHTLLHSRW 109 (398)
Q Consensus 96 LVLDLD~TLihs~~ 109 (398)
.|+|+||||+....
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 68999999997764
No 227
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=39.92 E-value=32 Score=32.96 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=30.6
Q ss_pred EEEeCccHHHHHHHhh-ccccEEEEcCCcHHHHHHHHHHh
Q 039039 152 LVKLRPFVRSFLEEAS-RLFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 152 ~vklRPgl~eFL~~~s-~~yEi~I~T~g~~~YA~~il~~L 190 (398)
-+.+|.|+.+|++.+. ..--+.||+||--.-.+.+++.-
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 4789999999999995 56799999999999999999886
No 228
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.66 E-value=15 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=10.1
Q ss_pred CCCcceee-ccccccccccc
Q 039039 37 ICQHATIL-NGMCVVCDKLM 55 (398)
Q Consensus 37 ~C~H~~~~-~~~C~~Cg~~~ 55 (398)
.|.+++.- ...|..||.++
T Consensus 4 ~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 4 NCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred ccCCCCCCcCcchhhhCCcC
Confidence 35555553 23677776653
No 229
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=38.39 E-value=64 Score=32.02 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=32.2
Q ss_pred cchhhhhhhheecccceeEEecCCCCCCch-----hhHHHHHHhCCEEeeecC
Q 039039 302 DVRSCLAKIRSRILMGCTILFGDDDFEELP-----LTWSRAEEMGAICTLVTD 349 (398)
Q Consensus 302 DVr~il~~~r~~vl~g~~i~fSg~~~~~~~-----~l~~la~~lGa~~~~~~~ 349 (398)
+++.++..+++..=++-.+++||-.|..-+ .+-+++.+.|+.+.-|.+
T Consensus 115 ~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 115 ELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred HHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 344444444444444556899999998644 666788888998877654
No 230
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.02 E-value=50 Score=24.47 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=35.2
Q ss_pred CcchhhhhhhheecccceeEEecC-CCCCCchhhHHHHHHhCCEEee
Q 039039 301 RDVRSCLAKIRSRILMGCTILFGD-DDFEELPLTWSRAEEMGAICTL 346 (398)
Q Consensus 301 ~DVr~il~~~r~~vl~g~~i~fSg-~~~~~~~~l~~la~~lGa~~~~ 346 (398)
.|++.+|...+..- ....+.|+. +.+.+|..+..+|+.+|-+..+
T Consensus 2 ~~~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S 47 (60)
T cd02640 2 NDYRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSRS 47 (60)
T ss_pred hhHHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCceee
Confidence 46778888777654 357789998 7777888999999999988654
No 231
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=37.97 E-value=14 Score=33.14 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=12.0
Q ss_pred EEEeCCCceeeeec
Q 039039 96 LVLDLDHTLLHSRW 109 (398)
Q Consensus 96 LVLDLD~TLihs~~ 109 (398)
.+||+||||+....
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58999999998754
No 232
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.57 E-value=17 Score=32.03 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.5
Q ss_pred EEEeCCCceeeee
Q 039039 96 LVLDLDHTLLHSR 108 (398)
Q Consensus 96 LVLDLD~TLihs~ 108 (398)
.++|+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 4899999999886
No 233
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=35.46 E-value=21 Score=32.25 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=12.9
Q ss_pred CceEEEEeCCCceeeee
Q 039039 92 RKLHLVLDLDHTLLHSR 108 (398)
Q Consensus 92 ~Kl~LVLDLD~TLihs~ 108 (398)
||+.|.+|+||||.+..
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 57789999999999876
No 234
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=34.56 E-value=36 Score=33.50 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHHhcCcCCCCC
Q 039039 335 SRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYFLWCRQPNDV 395 (398)
Q Consensus 335 ~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~ 395 (398)
.+-.++||.+...+| |||-.-..++++..|..+ |..|+..|+..-.|.||..
T Consensus 138 ~iQnalG~DImMQLD----dVV~~~ttg~rveeAM~R-----sIRWlDRCi~Ah~R~d~Q~ 189 (396)
T KOG3908|consen 138 EIQNALGADIMMQLD----DVVHTLTTGPRVEEAMYR-----SIRWLDRCIMAHNRDDEQN 189 (396)
T ss_pred HHHHHhchhhhhhhh----ccccccCCchHHHHHHHH-----HHHHHHHHHHHhcCccchh
Confidence 344788999887765 455555557889999986 5689999999999988764
No 235
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=32.77 E-value=31 Score=37.70 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=31.7
Q ss_pred eeCCccceeccCCCcccCCCCceeeccccCCCCcceeec-ccccccccccccC
Q 039039 7 VANNKKFCSWTGSDSLPLRLPLLSVSEEHTICQHATILN-GMCVVCDKLMDDS 58 (398)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~C~H~~~~~-~~C~~Cg~~~~~~ 58 (398)
+-++.+||.-+|.......+| .|.+.+-.+ ..|..||..+...
T Consensus 11 n~~~akFC~~CG~~l~~~~Cp---------~CG~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 11 NPNNNRFCQKCGTSLTHKPCP---------QCGTEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred CCCCCccccccCCCCCCCcCC---------CCCCCCCcccccccccCCcccch
Confidence 456788999998765444444 788888764 4999999997543
No 236
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=32.74 E-value=22 Score=21.52 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=10.4
Q ss_pred CCCcceee-ccccccccccc
Q 039039 37 ICQHATIL-NGMCVVCDKLM 55 (398)
Q Consensus 37 ~C~H~~~~-~~~C~~Cg~~~ 55 (398)
.|.+.+.. ...|..||+.+
T Consensus 7 ~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 7 NCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred ccCCcCCcccccChhhCCCC
Confidence 45554443 33677777653
No 237
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=31.13 E-value=70 Score=33.44 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=39.3
Q ss_pred ceEEEEeCccHHHHHHHhhc-cccEEEEcCCcHHHHHHHHHHh-CC-------CCCccceeEEE
Q 039039 149 NVLLVKLRPFVRSFLEEASR-LFEISVCTMGNREYATRAVKLL-DP-------DCKYFNSRIIT 203 (398)
Q Consensus 149 ~~~~vklRPgl~eFL~~~s~-~yEi~I~T~g~~~YA~~il~~L-DP-------~~~~F~~ri~s 203 (398)
..-|+..-|.+..+|+++.+ .=.+.+-|++.-.|++.+++.+ ++ ...|| +-|++
T Consensus 178 p~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlF-DvVIv 240 (448)
T PF05761_consen 178 PEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLF-DVVIV 240 (448)
T ss_dssp CCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCE-CEEEE
T ss_pred HHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhe-eEEEE
Confidence 35667778999999999954 4489999999999999999885 55 46688 65663
No 238
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=31.06 E-value=17 Score=26.70 Aligned_cols=16 Identities=13% Similarity=0.625 Sum_probs=13.3
Q ss_pred eecccccccccccccC
Q 039039 43 ILNGMCVVCDKLMDDS 58 (398)
Q Consensus 43 ~~~~~C~~Cg~~~~~~ 58 (398)
++.-.|..||.|+++.
T Consensus 2 Vf~lvCSTCGrDlSee 17 (63)
T PF05864_consen 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCCcchHH
Confidence 5667899999999765
No 239
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=30.66 E-value=83 Score=36.05 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=47.1
Q ss_pred hccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc
Q 039039 89 LRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~ 168 (398)
.+.++..|+||.||||+--...++ .. + ..+. .+-+..-|++.+-|+.++.
T Consensus 587 ~~a~~RLlfLDyDGTLap~~~~P~----~~-----------------~-----~~~~----~~~a~p~p~l~~~L~~L~~ 636 (934)
T PLN03064 587 LQSNNRLLILGFNATLTEPVDTPG----RR-----------------G-----DQIK----EMELRLHPELKEPLRALCS 636 (934)
T ss_pred HhccceEEEEecCceeccCCCCcc----cc-----------------c-----cccc----ccccCCCHHHHHHHHHHHh
Confidence 456788999999999986542110 00 0 0000 1123455889999999965
Q ss_pred --cccEEEEcCCcHHHHHHHHHHh
Q 039039 169 --LFEISVCTMGNREYATRAVKLL 190 (398)
Q Consensus 169 --~yEi~I~T~g~~~YA~~il~~L 190 (398)
...++|-|--.+.-.+..+..+
T Consensus 637 dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 637 DPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCCeEEEEeCCCHHHHHHHhCCC
Confidence 4778888888888777777554
No 240
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=30.04 E-value=57 Score=31.67 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=26.4
Q ss_pred hheecccceeEEecCCCCCCchhhHHHHHHhCCEEee
Q 039039 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTL 346 (398)
Q Consensus 310 ~r~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~ 346 (398)
.+.++|+|.+|..+--.-.+...+-.....+||.|..
T Consensus 36 ~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~ 72 (268)
T PF05221_consen 36 EAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRW 72 (268)
T ss_dssp TTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEE
T ss_pred hccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEE
Confidence 3568899999988654443455888889999999863
No 241
>PF11475 VP_N-CPKC: Virion protein N terminal domain ; InterPro: IPR021573 This is the N-terminal domain of a family of virion proteins which contains a zinc finger domain. Currently no function is known. ; PDB: 2BAI_A.
Probab=29.26 E-value=16 Score=22.90 Aligned_cols=20 Identities=35% Similarity=0.848 Sum_probs=11.4
Q ss_pred ccCCCCcceeecccccccccc
Q 039039 34 EHTICQHATILNGMCVVCDKL 54 (398)
Q Consensus 34 ~~~~C~H~~~~~~~C~~Cg~~ 54 (398)
+.+.|.|+..+.+ |..|..-
T Consensus 6 eqeicahsltf~e-cpkcsal 25 (32)
T PF11475_consen 6 EQEICAHSLTFEE-CPKCSAL 25 (32)
T ss_dssp -S---SSSS-GGG-HHHHH-S
T ss_pred HHHHHhccccccc-CcchhHh
Confidence 4578999999887 8888753
No 242
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=28.66 E-value=23 Score=28.61 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=12.3
Q ss_pred ecccccccccccccC
Q 039039 44 LNGMCVVCDKLMDDS 58 (398)
Q Consensus 44 ~~~~C~~Cg~~~~~~ 58 (398)
-.|+|+.||+.+.+.
T Consensus 68 kkGiCamCGKki~dt 82 (90)
T PF10235_consen 68 KKGICAMCGKKILDT 82 (90)
T ss_pred ccCcccccCCeeccc
Confidence 378999999998554
No 243
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=28.38 E-value=84 Score=35.36 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=43.5
Q ss_pred hccCceEEEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhc
Q 039039 89 LRMRKLHLVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (398)
Q Consensus 89 l~~~Kl~LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~ 168 (398)
.+.++..|+||.||||+..... .. .| .-+..-|++.+-|+.+++
T Consensus 503 ~~a~~rll~LDyDGTL~~~~~~--~~--------------------~p--------------~~a~p~~~l~~~L~~L~~ 546 (797)
T PLN03063 503 SKSNNRLLILGFYGTLTEPRNS--QI--------------------KE--------------MDLGLHPELKETLKALCS 546 (797)
T ss_pred HhccCeEEEEecCccccCCCCC--cc--------------------cc--------------ccCCCCHHHHHHHHHHHc
Confidence 3567889999999999943321 00 00 112345899999999965
Q ss_pred --cccEEEEcCCcHHHHHHHHH
Q 039039 169 --LFEISVCTMGNREYATRAVK 188 (398)
Q Consensus 169 --~yEi~I~T~g~~~YA~~il~ 188 (398)
.-.++|-|--+++-.++.+.
T Consensus 547 d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 547 DPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred CCCCEEEEEeCCCHHHHHHHhC
Confidence 46788888777777666664
No 244
>PHA03082 DNA-dependent RNA polymerase subunit; Provisional
Probab=28.00 E-value=20 Score=26.30 Aligned_cols=16 Identities=13% Similarity=0.625 Sum_probs=13.2
Q ss_pred eecccccccccccccC
Q 039039 43 ILNGMCVVCDKLMDDS 58 (398)
Q Consensus 43 ~~~~~C~~Cg~~~~~~ 58 (398)
++.-.|..||.|+++.
T Consensus 2 Vf~lVCsTCGrDlSee 17 (63)
T PHA03082 2 VFQLVCSTCGRDLSEE 17 (63)
T ss_pred eeeeeecccCcchhHH
Confidence 5667899999999765
No 245
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.93 E-value=76 Score=31.85 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=50.6
Q ss_pred EEEEeCc-cHHHHHHHhhc------cccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccC--------C----CCcc
Q 039039 151 LLVKLRP-FVRSFLEEASR------LFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITRED--------F----KQKE 211 (398)
Q Consensus 151 ~~vklRP-gl~eFL~~~s~------~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~--------~----~~~~ 211 (398)
+.+.-|| ++++-|+.+.+ .++|+|+-.|.+.-+..+++...-.=+++.+.-++-.. | ...+
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hy 85 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHY 85 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHH
Confidence 5577899 69999999954 58899999998876666665542110123221111000 0 0022
Q ss_pred ccccccccC--CCCcEEEEeCCcccc
Q 039039 212 RKCLDLVLG--QESSIVIVDDTESVW 235 (398)
Q Consensus 212 ~K~L~~l~~--~~~~vvIiDD~~~vw 235 (398)
...|+.++. ..+.+||+||.-..=
T Consensus 86 k~aln~vF~~~~~~~vIILEDDl~~s 111 (334)
T cd02514 86 KWALTQTFNLFGYSFVIILEDDLDIA 111 (334)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCccC
Confidence 335666553 378999999976543
No 246
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=25.96 E-value=27 Score=35.50 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=36.3
Q ss_pred cccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECC
Q 039039 314 ILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSN 359 (398)
Q Consensus 314 vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~ 359 (398)
+|....+.+-|..+..+..+.+-...+||.+.+-++..|||++..+
T Consensus 122 aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR 167 (468)
T COG5067 122 AFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRR 167 (468)
T ss_pred ccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEee
Confidence 4566666676666654446777888999999999999999999975
No 247
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=25.54 E-value=39 Score=30.17 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeeec
Q 039039 95 HLVLDLDHTLLHSRW 109 (398)
Q Consensus 95 ~LVLDLD~TLihs~~ 109 (398)
+++||.||||.....
T Consensus 3 ~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 3 AICFDKTGTLTQGKM 17 (215)
T ss_dssp EEEEECCTTTBESHH
T ss_pred EEEEecCCCcccCeE
Confidence 689999999987753
No 248
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=24.44 E-value=37 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=25.6
Q ss_pred eCccHHHHHHHhhccccEEEEcCCcHHHHHHHHHH-hCCC
Q 039039 155 LRPFVRSFLEEASRLFEISVCTMGNREYATRAVKL-LDPD 193 (398)
Q Consensus 155 lRPgl~eFL~~~s~~yEi~I~T~g~~~YA~~il~~-LDP~ 193 (398)
+||...+-+++ .. ..+|-|++.+.|++++++. |+-+
T Consensus 111 l~~~a~~~~~~--~g-~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRVFNS--FG-KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHHHHh--CC-CEEEEECCcHHHHHHHHHHcCCCC
Confidence 66666554443 23 3499999999999999975 5544
No 249
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=24.23 E-value=2.7e+02 Score=24.72 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=44.5
Q ss_pred eecccceeEEecCCCCCCchhhHHHHHHhCCEEeeecCCCccEEEECCCCCHHHHHHHhCCCeeeChhHHHHHHH
Q 039039 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASITHVVSSNTQSETFEWAEQENKCLVHPQWINDAYF 386 (398)
Q Consensus 312 ~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~~~~~~~vTHlVa~~~~t~K~~~A~~~gi~IV~~~WL~~c~~ 386 (398)
...+.|..++||+--......|.+++..++..- . .+ -||++ . ..--..|...|...+++++|..-+.
T Consensus 62 ~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~-~----~v-~VVTS-D-~~iq~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 62 REEYGGIEVVFTKEGETADDYIERLVRELKNRP-R----QV-TVVTS-D-REIQRAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred eeeeCceEEEECCCCCCHHHHHHHHHHHhccCC-C----eE-EEEeC-C-HHHHHHHhhCCCEEEcHHHHHHHHH
Confidence 335689999999875556678899999887521 1 11 23332 2 2233456678999999999887544
No 250
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=23.91 E-value=49 Score=24.28 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCCceeeccccCCCCcceeecccccccccc
Q 039039 25 RLPLLSVSEEHTICQHATILNGMCVVCDKL 54 (398)
Q Consensus 25 ~~p~~~~~~~~~~C~H~~~~~~~C~~Cg~~ 54 (398)
..|.+..+. .|.+....+-+|..||.-
T Consensus 23 ~~~~l~~C~---~CG~~~~~H~vC~~CG~Y 49 (57)
T PRK12286 23 KAPGLVECP---NCGEPKLPHRVCPSCGYY 49 (57)
T ss_pred cCCcceECC---CCCCccCCeEECCCCCcC
Confidence 456666665 899999999999999964
No 251
>PRK10671 copA copper exporting ATPase; Provisional
Probab=23.89 E-value=92 Score=35.10 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=53.7
Q ss_pred EeCccHHHHHHHh-hccccEEEEcCCcHHHHHHHHHHhCCCCCccceeEEEccCCCCccccccccccCCCCcEEEEeCCc
Q 039039 154 KLRPFVRSFLEEA-SRLFEISVCTMGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKCLDLVLGQESSIVIVDDTE 232 (398)
Q Consensus 154 klRPgl~eFL~~~-s~~yEi~I~T~g~~~YA~~il~~LDP~~~~F~~ri~srd~~~~~~~K~L~~l~~~~~~vvIiDD~~ 232 (398)
.+||++.+.|+++ ...+.+++.|...+..|+.+++.++-+. +|.. +. .+ ...+-++.+......++++-|..
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-~~~~-~~-p~----~K~~~i~~l~~~~~~v~~vGDg~ 722 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE-VIAG-VL-PD----GKAEAIKRLQSQGRQVAMVGDGI 722 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE-EEeC-CC-HH----HHHHHHHHHhhcCCEEEEEeCCH
Confidence 5899999999999 6789999999999999999999998764 4422 21 11 11122333334456799998887
Q ss_pred cccc
Q 039039 233 SVWG 236 (398)
Q Consensus 233 ~vw~ 236 (398)
.-.+
T Consensus 723 nD~~ 726 (834)
T PRK10671 723 NDAP 726 (834)
T ss_pred HHHH
Confidence 5443
No 252
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=22.98 E-value=85 Score=34.44 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=55.2
Q ss_pred hheecccceeEEecCCCCCC-chhhHHHHHHhCCEEee------ecCCCccEEEECC------CCCHHHHHHH----hCC
Q 039039 310 IRSRILMGCTILFGDDDFEE-LPLTWSRAEEMGAICTL------VTDASITHVVSSN------TQSETFEWAE----QEN 372 (398)
Q Consensus 310 ~r~~vl~g~~i~fSg~~~~~-~~~l~~la~~lGa~~~~------~~~~~vTHlVa~~------~~t~K~~~A~----~~g 372 (398)
.+.++|.|..++|-|-+... ...+..++..-||++.. +.++..|-++... ...+|...|. ..+
T Consensus 583 ~~~kLf~gl~~~~~g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~ 662 (684)
T KOG4362|consen 583 YKPKLFEGLKFYFVGDFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQR 662 (684)
T ss_pred cCcchhcCCcceeecccccCcHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHHHhcC
Confidence 56689999999999987764 34788888889998843 2233333333331 2244554333 357
Q ss_pred CeeeChhHHHHHHHhcCc
Q 039039 373 KCLVHPQWINDAYFLWCR 390 (398)
Q Consensus 373 i~IV~~~WL~~c~~~~~r 390 (398)
-..|+-.|+.+++...+.
T Consensus 663 a~~~~~~wvl~s~a~~~~ 680 (684)
T KOG4362|consen 663 ARAVSSSWVLDSIAGYQI 680 (684)
T ss_pred CCccchhhhhcchhceee
Confidence 899999999999886654
No 253
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=22.14 E-value=70 Score=27.90 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=40.7
Q ss_pred EEEeCCCceeeeeccCCCCchHHHHHHHHHhhcccccccCCCCCceeEEeeccceEEEEeCccHHHHHHHhhccccEEEE
Q 039039 96 LVLDLDHTLLHSRWIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVC 175 (398)
Q Consensus 96 LVLDLD~TLihs~~~~~~~~~e~~~~~~~~~~~~F~~~~~p~~~~~f~~~~~~~~~~vklRPgl~eFL~~~s~~yEi~I~ 175 (398)
-+|||||.|++....++++..+-. ..+..+ ..| .+ +. +-..|- -++.++++..|.-.+|
T Consensus 46 AildL~G~~l~l~S~R~~~~~evi-----~~I~~~---G~P---vi--VA-------tDV~p~-P~~V~Kia~~f~A~ly 104 (138)
T PF04312_consen 46 AILDLDGELLDLKSSRNMSRSEVI-----EWISEY---GKP---VI--VA-------TDVSPP-PETVKKIARSFNAVLY 104 (138)
T ss_pred EEEecCCcEEEEEeecCCCHHHHH-----HHHHHc---CCE---EE--EE-------ecCCCC-cHHHHHHHHHhCCccc
Confidence 369999999999988777665421 111111 111 00 00 011121 3556777777777777
Q ss_pred cCCcHHHHHHHHHHhC
Q 039039 176 TMGNREYATRAVKLLD 191 (398)
Q Consensus 176 T~g~~~YA~~il~~LD 191 (398)
|-...--.++=..+..
T Consensus 105 ~P~~dlsveeK~~l~~ 120 (138)
T PF04312_consen 105 TPERDLSVEEKQELAR 120 (138)
T ss_pred CCCCcCCHHHHHHHHH
Confidence 7766555555444443
No 254
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=21.81 E-value=59 Score=30.30 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=19.7
Q ss_pred EeCccHHHHHHHhhcccc--EEEEcCCcHHH
Q 039039 154 KLRPFVRSFLEEASRLFE--ISVCTMGNREY 182 (398)
Q Consensus 154 klRPgl~eFL~~~s~~yE--i~I~T~g~~~Y 182 (398)
+.-|++.+.|++++.... ++|-|.-+..-
T Consensus 19 ~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 19 VPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp ---HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 455999999999988777 77776666655
No 255
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.74 E-value=1.3e+02 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.6
Q ss_pred cCceEEEEeCCCceeeee
Q 039039 91 MRKLHLVLDLDHTLLHSR 108 (398)
Q Consensus 91 ~~Kl~LVLDLD~TLihs~ 108 (398)
....+|||+=|||.|.+.
T Consensus 40 ~~~~~lvL~eDGT~VddE 57 (80)
T cd06536 40 SAPITLVLAEDGTIVEDE 57 (80)
T ss_pred CCceEEEEecCCcEEccH
Confidence 457999999999999875
No 256
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=21.34 E-value=1e+02 Score=34.72 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=56.1
Q ss_pred eecccceeEEecCCCCCCchhhHHHHHHhCCEEe-eecCCCccEEEECCCCCHHHHHHHhC-CCeeeChhHHHHHHHhcC
Q 039039 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICT-LVTDASITHVVSSNTQSETFEWAEQE-NKCLVHPQWINDAYFLWC 389 (398)
Q Consensus 312 ~~vl~g~~i~fSg~~~~~~~~l~~la~~lGa~~~-~~~~~~vTHlVa~~~~t~K~~~A~~~-gi~IV~~~WL~~c~~~~~ 389 (398)
...|+|.-++..|.......++...-.-+|+... ..--+.+||+||......|++ .. +-+..++.|+.+|+....
T Consensus 45 ~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~~~~ 121 (1016)
T KOG2093|consen 45 SSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCENGM 121 (1016)
T ss_pred cceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHhccC
Confidence 4568888888777665544455655566677766 555678999999876544432 22 345789999999999877
Q ss_pred cCCCCCC
Q 039039 390 RQPNDVS 396 (398)
Q Consensus 390 r~~E~~Y 396 (398)
-+.=-+|
T Consensus 122 ~~~~~~~ 128 (1016)
T KOG2093|consen 122 DVGYYPY 128 (1016)
T ss_pred ccccccc
Confidence 6654444
Done!