Query 039042
Match_columns 526
No_of_seqs 213 out of 2949
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.3E-26 2.9E-31 261.1 18.4 452 17-519 58-555 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.7E-26 3.7E-31 260.3 18.8 419 49-519 138-579 (968)
3 PLN03210 Resistant to P. syrin 99.9 2.8E-23 6.1E-28 234.8 18.9 298 127-504 610-910 (1153)
4 PLN03210 Resistant to P. syrin 99.9 1.5E-21 3.2E-26 220.8 19.2 333 126-520 556-902 (1153)
5 KOG4194 Membrane glycoprotein 99.9 5.9E-23 1.3E-27 200.1 4.0 344 127-519 101-447 (873)
6 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.3E-26 192.7 -5.6 132 351-501 244-376 (1255)
7 KOG4194 Membrane glycoprotein 99.8 6.1E-20 1.3E-24 179.3 3.6 329 41-434 92-425 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 6.2E-22 1.3E-26 185.0 -12.0 396 47-498 87-539 (565)
9 KOG0444 Cytoskeletal regulator 99.7 3.1E-19 6.6E-24 175.6 -1.8 372 54-495 10-394 (1255)
10 KOG0472 Leucine-rich repeat pr 99.6 3.4E-18 7.4E-23 160.2 -7.5 343 75-472 159-539 (565)
11 KOG0618 Serine/threonine phosp 99.6 4.9E-17 1.1E-21 167.3 -2.4 388 53-519 47-484 (1081)
12 KOG0618 Serine/threonine phosp 99.4 1.6E-15 3.5E-20 156.2 -5.9 358 46-473 86-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.4 2.7E-12 6E-17 136.2 12.5 232 128-435 222-455 (788)
14 PRK15387 E3 ubiquitin-protein 99.4 3.9E-12 8.5E-17 135.0 12.2 254 156-498 201-456 (788)
15 KOG4341 F-box protein containi 99.3 3.5E-14 7.6E-19 134.4 -8.3 188 128-335 138-328 (483)
16 PRK15370 E3 ubiquitin-protein 99.2 1.3E-11 2.9E-16 131.7 8.3 137 128-310 199-335 (754)
17 PRK15370 E3 ubiquitin-protein 99.2 2.3E-11 5E-16 129.9 8.1 38 53-94 180-217 (754)
18 KOG4341 F-box protein containi 99.1 2.4E-12 5.1E-17 122.2 -4.4 59 374-432 400-459 (483)
19 KOG4237 Extracellular matrix p 99.1 1.9E-12 4.2E-17 121.8 -5.5 277 76-408 67-355 (498)
20 KOG4658 Apoptotic ATPase [Sign 99.0 9.3E-11 2E-15 127.3 2.1 131 369-506 711-848 (889)
21 KOG0617 Ras suppressor protein 99.0 1.5E-11 3.2E-16 103.0 -4.4 130 127-287 55-185 (264)
22 KOG0617 Ras suppressor protein 98.9 6.5E-11 1.4E-15 99.1 -3.5 149 127-311 32-184 (264)
23 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 3E-14 118.2 2.6 118 375-506 747-866 (889)
24 KOG4237 Extracellular matrix p 98.8 4E-10 8.8E-15 106.4 -2.2 130 54-197 70-201 (498)
25 cd00116 LRR_RI Leucine-rich re 98.7 1.3E-09 2.8E-14 107.2 -2.2 37 399-436 250-289 (319)
26 cd00116 LRR_RI Leucine-rich re 98.6 5.5E-09 1.2E-13 102.8 -0.1 61 375-436 193-261 (319)
27 KOG3207 Beta-tubulin folding c 98.6 1E-08 2.3E-13 98.4 0.8 161 73-255 118-281 (505)
28 KOG3207 Beta-tubulin folding c 98.6 7E-09 1.5E-13 99.5 -1.8 186 126-337 144-336 (505)
29 PF14580 LRR_9: Leucine-rich r 98.3 4.6E-07 1E-11 79.2 2.6 82 154-255 17-98 (175)
30 KOG2120 SCF ubiquitin ligase, 98.2 3.8E-08 8.3E-13 90.0 -5.2 59 272-335 310-371 (419)
31 KOG2120 SCF ubiquitin ligase, 98.1 3.6E-08 7.8E-13 90.2 -6.9 136 217-360 233-371 (419)
32 PF14580 LRR_9: Leucine-rich r 98.1 2E-06 4.3E-11 75.3 3.6 106 127-256 18-124 (175)
33 KOG0532 Leucine-rich repeat (L 98.1 7.4E-07 1.6E-11 88.6 0.1 192 55-287 54-246 (722)
34 KOG0532 Leucine-rich repeat (L 97.9 4E-07 8.7E-12 90.5 -5.4 147 127-311 97-245 (722)
35 PRK15386 type III secretion pr 97.8 7.6E-05 1.6E-09 73.6 8.9 135 323-497 48-187 (426)
36 PF13855 LRR_8: Leucine rich r 97.8 3.2E-05 7E-10 55.2 4.7 37 216-255 23-59 (61)
37 KOG1259 Nischarin, modulator o 97.8 7.2E-06 1.6E-10 75.4 1.2 125 327-472 284-410 (490)
38 KOG1259 Nischarin, modulator o 97.8 7.4E-06 1.6E-10 75.4 0.9 131 352-504 284-415 (490)
39 KOG1909 Ran GTPase-activating 97.7 2.8E-06 6E-11 79.8 -3.3 177 127-312 119-310 (382)
40 PF13855 LRR_8: Leucine rich r 97.7 0.00011 2.3E-09 52.4 5.4 56 353-409 2-59 (61)
41 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 70.8 7.2 131 351-519 51-185 (426)
42 KOG1947 Leucine rich repeat pr 97.5 6.5E-06 1.4E-10 85.8 -3.8 141 154-308 186-329 (482)
43 KOG3665 ZYG-1-like serine/thre 97.5 1.5E-05 3.3E-10 85.0 -1.9 109 127-255 121-230 (699)
44 COG4886 Leucine-rich repeat (L 97.4 0.00014 2.9E-09 73.9 4.3 144 219-386 141-288 (394)
45 COG4886 Leucine-rich repeat (L 97.3 0.00016 3.6E-09 73.3 3.7 176 73-312 113-289 (394)
46 KOG3665 ZYG-1-like serine/thre 97.3 5.3E-05 1.2E-09 80.9 -0.0 135 75-227 121-259 (699)
47 KOG1947 Leucine rich repeat pr 97.2 1.5E-05 3.1E-10 83.2 -5.1 36 299-335 268-303 (482)
48 KOG1859 Leucine-rich repeat pr 97.0 2.2E-05 4.9E-10 80.5 -6.2 183 71-287 104-291 (1096)
49 PLN03150 hypothetical protein; 96.9 0.0016 3.4E-08 69.8 6.6 88 354-444 420-509 (623)
50 PLN03150 hypothetical protein; 96.8 0.0015 3.3E-08 69.9 4.9 81 158-255 420-500 (623)
51 KOG2982 Uncharacterized conser 96.7 0.00078 1.7E-08 62.4 2.2 38 399-436 173-210 (418)
52 KOG2982 Uncharacterized conser 96.6 0.0016 3.4E-08 60.5 3.1 188 50-259 70-263 (418)
53 KOG2123 Uncharacterized conser 96.4 0.00023 5E-09 65.1 -3.4 104 127-251 18-123 (388)
54 KOG1909 Ran GTPase-activating 96.2 0.001 2.2E-08 63.0 -0.5 214 45-287 86-310 (382)
55 PF12799 LRR_4: Leucine Rich r 96.1 0.0058 1.3E-07 40.0 3.0 33 219-255 2-34 (44)
56 PF12799 LRR_4: Leucine Rich r 96.0 0.0051 1.1E-07 40.3 2.1 33 157-194 2-34 (44)
57 KOG0531 Protein phosphatase 1, 95.6 0.0036 7.8E-08 63.8 0.3 58 127-194 139-196 (414)
58 KOG1644 U2-associated snRNP A' 95.6 0.014 3E-07 51.3 3.8 11 243-253 138-148 (233)
59 KOG0531 Protein phosphatase 1, 95.5 0.0016 3.6E-08 66.3 -2.6 57 127-194 94-150 (414)
60 KOG3864 Uncharacterized conser 95.1 0.0018 3.9E-08 56.7 -3.0 45 396-440 122-166 (221)
61 KOG1644 U2-associated snRNP A' 95.1 0.027 5.8E-07 49.6 4.0 86 182-283 62-148 (233)
62 KOG1859 Leucine-rich repeat pr 94.9 0.00078 1.7E-08 69.7 -6.7 77 298-384 185-263 (1096)
63 KOG2123 Uncharacterized conser 94.1 0.0017 3.8E-08 59.6 -5.6 108 154-282 17-124 (388)
64 KOG2739 Leucine-rich acidic nu 93.6 0.041 9E-07 50.4 2.1 62 273-335 89-151 (260)
65 PF13306 LRR_5: Leucine rich r 93.5 0.31 6.6E-06 40.3 7.2 11 243-253 33-43 (129)
66 PF13306 LRR_5: Leucine rich r 93.0 0.56 1.2E-05 38.7 8.0 31 353-383 36-66 (129)
67 KOG3864 Uncharacterized conser 92.6 0.023 5.1E-07 50.0 -1.0 68 370-438 120-189 (221)
68 KOG4579 Leucine-rich repeat (L 92.3 0.0048 1E-07 50.7 -5.2 44 155-203 52-95 (177)
69 KOG2739 Leucine-rich acidic nu 90.1 0.17 3.6E-06 46.6 1.7 86 349-436 62-154 (260)
70 PF13504 LRR_7: Leucine rich r 89.2 0.26 5.6E-06 24.8 1.3 11 488-498 2-12 (17)
71 KOG4579 Leucine-rich repeat (L 86.4 0.14 2.9E-06 42.4 -1.1 58 127-194 76-133 (177)
72 PF00560 LRR_1: Leucine Rich R 84.2 0.66 1.4E-05 25.0 1.3 16 489-505 2-17 (22)
73 smart00367 LRR_CC Leucine-rich 81.9 0.8 1.7E-05 25.8 1.1 17 486-502 1-17 (26)
74 COG5238 RNA1 Ran GTPase-activa 78.2 0.89 1.9E-05 42.2 0.7 88 127-228 156-252 (388)
75 smart00370 LRR Leucine-rich re 58.8 7.7 0.00017 21.6 1.6 22 75-96 1-22 (26)
76 smart00369 LRR_TYP Leucine-ric 58.8 7.7 0.00017 21.6 1.6 22 75-96 1-22 (26)
77 COG5238 RNA1 Ran GTPase-activa 39.8 14 0.0003 34.7 1.0 117 31-166 11-130 (388)
78 PF13516 LRR_6: Leucine Rich r 37.6 23 0.0005 19.2 1.3 12 156-167 2-13 (24)
79 smart00365 LRR_SD22 Leucine-ri 35.7 28 0.00061 19.7 1.5 16 184-200 2-17 (26)
80 KOG3763 mRNA export factor TAP 28.9 23 0.00051 36.6 0.7 39 216-255 216-254 (585)
81 smart00368 LRR_RI Leucine rich 27.8 21 0.00046 20.4 0.1 13 129-141 3-15 (28)
82 KOG3763 mRNA export factor TAP 27.5 21 0.00046 36.9 0.1 13 182-194 242-254 (585)
83 smart00364 LRR_BAC Leucine-ric 27.1 37 0.00081 19.2 1.0 18 487-505 2-19 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.3e-26 Score=261.15 Aligned_cols=452 Identities=15% Similarity=0.085 Sum_probs=208.1
Q ss_pred cccccCCc--eeeeEEEEecceeehhHHHHHhccccccceeccccccccc-ccccccccccCCcccEEEEecCCCCCC-c
Q 039042 17 WYWESTNI--WRREFRLRLNNKICLKDWLILQLQGIEDLELHELQEQDVN-YFANELVRVGSSQLKFLGIHGCRDALN-P 92 (526)
Q Consensus 17 ~~~~~~~~--~~~~~~l~l~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~c~~~~~-p 92 (526)
+.|.|..+ .+++..+++..... ...+...+..+++|+.++++++.+. .+|..+ ...+++|++|++++|..... |
T Consensus 58 c~w~gv~c~~~~~v~~L~L~~~~i-~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n~l~~~~p 135 (968)
T PLN00113 58 CLWQGITCNNSSRVVSIDLSGKNI-SGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNNNFTGSIP 135 (968)
T ss_pred CcCcceecCCCCcEEEEEecCCCc-cccCChHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCCccccccC
Confidence 56765332 34566677654311 1122345677888888888877654 355431 22567777777777765544 4
Q ss_pred hhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCce
Q 039042 93 SAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLR 170 (526)
Q Consensus 93 ~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 170 (526)
. +.+++|++ +.++.....++. .++.+++|++|++++|.+.... |.. ++++++|++|++++|....
T Consensus 136 ~---~~l~~L~~L~Ls~n~~~~~~p~------~~~~l~~L~~L~L~~n~l~~~~---p~~-~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 136 R---GSIPNLETLDLSNNMLSGEIPN------DIGSFSSLKVLDLGGNVLVGKI---PNS-LTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred c---cccCCCCEEECcCCcccccCCh------HHhcCCCCCEEECccCcccccC---Chh-hhhCcCCCeeeccCCCCcC
Confidence 3 24555555 444332222221 1222555555555555433210 222 3345555555555543222
Q ss_pred ecCCcccccccccccccEEeeeccccccEEEeecch-------------h-hhcccccccccccceeecccCcccccccc
Q 039042 171 CLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ-------------E-EERKNNIVMFPQLQYLKMYDLEKLTSFCT 236 (526)
Q Consensus 171 ~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~-------------~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 236 (526)
. .|..+. .+++|++|++++|.....+|..+.. . ...+..++.+++|++|+++++.-...+|.
T Consensus 203 ~-~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 203 Q-IPRELG---QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred c-CChHHc---CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 2 233332 4455555555544322222222100 0 00000013444455555444322222222
Q ss_pred CcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--ccccccccEEEeeeCCccc
Q 039042 237 GDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKLKCLDVEFVDELT 314 (526)
Q Consensus 237 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~ 314 (526)
. +..+++|++|++++|.....+|..+ ..+++|+.|++++|.+.. ..| ...+++|+.|++++|....
T Consensus 279 ~---l~~l~~L~~L~Ls~n~l~~~~p~~~------~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 279 S---IFSLQKLISLDLSDNSLSGEIPELV------IQLQNLEILHLFSNNFTG---KIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred h---HhhccCcCEEECcCCeeccCCChhH------cCCCCCcEEECCCCccCC---cCChhHhcCCCCCEEECcCCCCcC
Confidence 2 3344555555555442111222111 234555555555443321 111 1234555556655554332
Q ss_pred ccccchhHhhcCCCccEEEEe-ec-cccccCCCc---------------------CccccccceEEEec-cCceeecccc
Q 039042 315 TILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKV---------------------ENGMEVIIRRVFRC-YDLKYILKQE 370 (526)
Q Consensus 315 ~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~---------------------~~~~~~~L~~L~l~-~~l~~~~~~~ 370 (526)
.+|. .+..+++|+.|+++ +. .+..|.... ....+++|+.|++. +.+....+..
T Consensus 347 --~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 347 --EIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred --cCCh-HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 2332 34455556665555 22 111111000 00223344444444 3333333333
Q ss_pred ccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcc
Q 039042 371 SSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDH 450 (526)
Q Consensus 371 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 450 (526)
+..++.|+.|++++|.....++.....+++|+.|++++|.-...++. . ...++|+.|++++|.....++.
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~--~-~~~~~L~~L~ls~n~l~~~~~~------- 493 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--S-FGSKRLENLDLSRNQFSGAVPR------- 493 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc--c-cccccceEEECcCCccCCccCh-------
Confidence 44444444444444433333332333444455555554432222221 1 1224555555555432222222
Q ss_pred cccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 451 DAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 451 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
.+..+++|+.|++++|.....+|.. +..+++|+.|++++|.-....|.....+++|+.++++
T Consensus 494 -----~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 494 -----KLGSLSELMQLKLSENKLSGEIPDE--LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred -----hhhhhhccCEEECcCCcceeeCChH--HcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 2335678888888886544556654 5678899999999876555666666678899999887
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.7e-26 Score=260.31 Aligned_cols=419 Identities=16% Similarity=0.063 Sum_probs=222.7
Q ss_pred ccccceeccccccccc-ccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccch
Q 039042 49 GIEDLELHELQEQDVN-YFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNT 124 (526)
Q Consensus 49 ~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~ 124 (526)
.+.+|+.++++.+.+. ..|. ..+.+++|++|++++|..... |. .++++++|++ +.+|.....++.. +
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~------l 208 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRE------L 208 (968)
T ss_pred ccCCCCEEECcCCcccccCCh--HHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChH------H
Confidence 3556666666665543 2333 234567777777777765544 33 3566777776 5555433222221 1
Q ss_pred hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042 125 LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD 204 (526)
Q Consensus 125 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~ 204 (526)
+.+++|+.|++++|.+... .|.+ +..+++|++|++++|..... .|..+. .+++|++|++++|.....+|..+
T Consensus 209 ~~l~~L~~L~L~~n~l~~~---~p~~-l~~l~~L~~L~L~~n~l~~~-~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGE---IPYE-IGGLTSLNHLDLVYNNLTGP-IPSSLG---NLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred cCcCCccEEECcCCccCCc---CChh-HhcCCCCCEEECcCceeccc-cChhHh---CCCCCCEEECcCCeeeccCchhH
Confidence 2245555555555544321 0222 33455555555555432222 233333 44555555555442222222111
Q ss_pred ch-------------hh-hcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcc
Q 039042 205 NQ-------------EE-ERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLT 270 (526)
Q Consensus 205 ~~-------------~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 270 (526)
.. .. ..+..+..+++|++|+++++......+.. +..+++|+.|++++|.--..+|..+
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l----- 352 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNL----- 352 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHH-----
Confidence 00 00 00000134555555555554322233322 4456666666666653222233222
Q ss_pred ccccCCcceEEEeeccccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCc
Q 039042 271 KKVFPNLEELIVDAEYIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKV 346 (526)
Q Consensus 271 ~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~ 346 (526)
..+++|+.|++++|.+.. .+|.. .+++|+.|++++|.... .+|. .+..+++|+.|.+. |. .+..|.. +
T Consensus 353 -~~~~~L~~L~Ls~n~l~~---~~p~~~~~~~~L~~L~l~~n~l~~--~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~-~ 424 (968)
T PLN00113 353 -GKHNNLTVLDLSTNNLTG---EIPEGLCSSGNLFKLILFSNSLEG--EIPK-SLGACRSLRRVRLQDNSFSGELPSE-F 424 (968)
T ss_pred -hCCCCCcEEECCCCeeEe---eCChhHhCcCCCCEEECcCCEecc--cCCH-HHhCCCCCCEEECcCCEeeeECChh-H
Confidence 245666666666554431 12221 33566666666655433 3333 45667788888877 33 3233322 1
Q ss_pred CccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcc
Q 039042 347 ENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLV 425 (526)
Q Consensus 347 ~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 425 (526)
..+++|+.|+++ +.+....+..+..+++|+.|++++|.....+|.. ...++|+.|++++|.-....+ ..+..++
T Consensus 425 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~--~~~~~l~ 499 (968)
T PLN00113 425 --TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVP--RKLGSLS 499 (968)
T ss_pred --hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccC--hhhhhhh
Confidence 456788888888 7777666666667788888888887665555443 345678888887763222333 3455677
Q ss_pred cccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCC
Q 039042 426 RLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSR 505 (526)
Q Consensus 426 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~ 505 (526)
+|+.|++++|.....+|.. +..+++|++|++++|.....+|.. +..+++|+.|++++|.-...+|.
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDE------------LSSCKKLVSLDLSHNQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCEEECcCCcceeeCChH------------HcCccCCCEEECCCCcccccCChh--HhCcccCCEEECCCCcccccCCh
Confidence 7888888776544444443 224677777777775444444443 55667777777777665556666
Q ss_pred CCCCCcccceEEec
Q 039042 506 GELSTPVLHKVQLN 519 (526)
Q Consensus 506 ~~~~~~~L~~l~l~ 519 (526)
....+++|++++++
T Consensus 566 ~l~~l~~L~~l~ls 579 (968)
T PLN00113 566 NLGNVESLVQVNIS 579 (968)
T ss_pred hHhcCcccCEEecc
Confidence 66666777777766
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.8e-23 Score=234.78 Aligned_cols=298 Identities=21% Similarity=0.291 Sum_probs=189.1
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+.+|+.|++.++.+..+|.+ +..+++|+.|++++|..++.+ |. ++.+++|++|++.+|..+..+|..+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~i-p~----ls~l~~Le~L~L~~c~~L~~lp~si-- 677 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEI-PD----LSMATNLETLKLSDCSSLVELPSSI-- 677 (1153)
T ss_pred ccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcC-Cc----cccCCcccEEEecCCCCccccchhh--
Confidence 67888899999888887764 347889999999988777765 53 3378899999999988888777654
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+.+++|++|++++|..++.+|.. + ++++|+.|.+++|..+..+| ...++|+.|+++++.
T Consensus 678 --------~~L~~L~~L~L~~c~~L~~Lp~~---i-~l~sL~~L~Lsgc~~L~~~p---------~~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 678 --------QYLNKLEDLDMSRCENLEILPTG---I-NLKSLYRLNLSGCSRLKSFP---------DISTNISWLDLDETA 736 (1153)
T ss_pred --------hccCCCCEEeCCCCCCcCccCCc---C-CCCCCCEEeCCCCCCccccc---------cccCCcCeeecCCCc
Confidence 67889999999998888888766 3 68899999999997776655 235678888888664
Q ss_pred ccccceecccc-ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec--cCc
Q 039042 287 IITNKFIFSED-LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC--YDL 363 (526)
Q Consensus 287 ~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~~l 363 (526)
+ ..+|.. .+++|++|.+.++.... +.. .+..++ ......+++|+.|++. +.+
T Consensus 737 i----~~lP~~~~l~~L~~L~l~~~~~~~---l~~-~~~~l~-----------------~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 737 I----EEFPSNLRLENLDELILCEMKSEK---LWE-RVQPLT-----------------PLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred c----ccccccccccccccccccccchhh---ccc-cccccc-----------------hhhhhccccchheeCCCCCCc
Confidence 4 334432 45667777666543211 000 000000 0000123455555555 223
Q ss_pred eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042 364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL 443 (526)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 443 (526)
..+ +..++.+++|+.|++++|..+..+|... .+++|+.|++++|.++..++. ..++|+.|++++ +.++++|.
T Consensus 792 ~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~iP~ 863 (1153)
T PLN03210 792 VEL-PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEEVPW 863 (1153)
T ss_pred ccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCccChH
Confidence 333 3345566666777776666666665443 566666777766666655442 125666666665 34555554
Q ss_pred cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccC
Q 039042 444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFS 504 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~ 504 (526)
. +..+++|+.|++.+|++++.++.. ...+++|+.+++++|.+++.++
T Consensus 864 s------------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 W------------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred H------------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 3 224566666666666666666654 3456666666666666665443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.5e-21 Score=220.85 Aligned_cols=333 Identities=17% Similarity=0.173 Sum_probs=235.8
Q ss_pred hhhhhhhhcccccccc---cccccccccccccC-CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE
Q 039042 126 FLEKLEKLELRSINIE---RIWRNQVAAMTCGI-QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI 201 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~---~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~ 201 (526)
.+++|+.|.+..+... ..-...|.+ +..+ .+|+.|.+.+++ ++.+ |..+ ...+|++|++.++ .++.++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~-l~~l-P~~f----~~~~L~~L~L~~s-~l~~L~ 627 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYP-LRCM-PSNF----RPENLVKLQMQGS-KLEKLW 627 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCC-CCCC-CCcC----CccCCcEEECcCc-cccccc
Confidence 4667777777554211 111111222 2233 458888887764 3443 5543 3577888888887 566666
Q ss_pred eecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEE
Q 039042 202 VVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELI 281 (526)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~ 281 (526)
... ..+++|++|+++++..++.+|. +..+++|++|++++|..+..+|..+ ..+++|+.|+
T Consensus 628 ~~~----------~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~si------~~L~~L~~L~ 687 (1153)
T PLN03210 628 DGV----------HSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPSSI------QYLNKLEDLD 687 (1153)
T ss_pred ccc----------ccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccchhh------hccCCCCEEe
Confidence 543 5678888888887777777653 4467888888888888887777665 4678888888
Q ss_pred Eeeccccccceecccc-ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEe
Q 039042 282 VDAEYIITNKFIFSED-LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFR 359 (526)
Q Consensus 282 l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l 359 (526)
+++|.. +..+|.. .+++|+.|++++|..+. .+|. ..++|+.|++.++ ...+|.. ..+++|++|.+
T Consensus 688 L~~c~~---L~~Lp~~i~l~sL~~L~Lsgc~~L~--~~p~----~~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L~l 754 (1153)
T PLN03210 688 MSRCEN---LEILPTGINLKSLYRLNLSGCSRLK--SFPD----ISTNISWLDLDETAIEEFPSN----LRLENLDELIL 754 (1153)
T ss_pred CCCCCC---cCccCCcCCCCCCCEEeCCCCCCcc--cccc----ccCCcCeeecCCCcccccccc----ccccccccccc
Confidence 886532 2445543 56788888888887776 4443 2467888888744 4444432 23567777777
Q ss_pred c-cCcee-------eccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEE
Q 039042 360 C-YDLKY-------ILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMK 431 (526)
Q Consensus 360 ~-~~l~~-------~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 431 (526)
. ..... +.+.....+++|+.|++++|..+..+|..+..+++|+.|+|++|.+++.+|.. . .+++|+.|+
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~-~L~sL~~L~ 831 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--I-NLESLESLD 831 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--C-CccccCEEE
Confidence 6 11111 11122233579999999999999999988899999999999999999988743 2 689999999
Q ss_pred EccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCc
Q 039042 432 IESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTP 511 (526)
Q Consensus 432 i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~ 511 (526)
+++|..+..++. ..++|+.|++++ +.++.+|.. +..+++|+.|++++|++++.+|.....++
T Consensus 832 Ls~c~~L~~~p~---------------~~~nL~~L~Ls~-n~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 832 LSGCSRLRTFPD---------------ISTNISDLNLSR-TGIEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CCCCCccccccc---------------cccccCEeECCC-CCCccChHH--HhcCCCCCEEECCCCCCcCccCccccccc
Confidence 999998877654 247899999987 578888875 67899999999999999999998877788
Q ss_pred ccceEEecc
Q 039042 512 VLHKVQLNR 520 (526)
Q Consensus 512 ~L~~l~l~~ 520 (526)
+|+.++++.
T Consensus 894 ~L~~L~l~~ 902 (1153)
T PLN03210 894 HLETVDFSD 902 (1153)
T ss_pred CCCeeecCC
Confidence 898888773
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.9e-23 Score=200.12 Aligned_cols=344 Identities=17% Similarity=0.160 Sum_probs=250.9
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|+.+++.+|.++.+ |.. .....+|+.|+|.++ .++.+-... ++.++.||.|+|+.| .+.+++...+
T Consensus 101 l~nLq~v~l~~N~Lt~I----P~f-~~~sghl~~L~L~~N-~I~sv~se~---L~~l~alrslDLSrN-~is~i~~~sf- 169 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRI----PRF-GHESGHLEKLDLRHN-LISSVTSEE---LSALPALRSLDLSRN-LISEIPKPSF- 169 (873)
T ss_pred CCcceeeeeccchhhhc----ccc-cccccceeEEeeecc-ccccccHHH---HHhHhhhhhhhhhhc-hhhcccCCCC-
Confidence 67778888888877766 322 335677899999885 444442333 337888999999998 7777765321
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
..-.++++|++++ +.++.+-.+ ++.++.+|..|.++++ .++.+|...+ +++++|+.|++..|.
T Consensus 170 --------p~~~ni~~L~La~-N~It~l~~~--~F~~lnsL~tlkLsrN-rittLp~r~F-----k~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 170 --------PAKVNIKKLNLAS-NRITTLETG--HFDSLNSLLTLKLSRN-RITTLPQRSF-----KRLPKLESLDLNRNR 232 (873)
T ss_pred --------CCCCCceEEeecc-ccccccccc--cccccchheeeecccC-cccccCHHHh-----hhcchhhhhhccccc
Confidence 2335699999987 466666444 3667888999999988 7888887654 379999999998776
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+. -++.+.+..+++|+.|.+.++.--. +..+.+-.+.++++|++. +....+..+++ .++.+|+.|+++ +.++
T Consensus 233 ir-ive~ltFqgL~Sl~nlklqrN~I~k---L~DG~Fy~l~kme~l~L~~N~l~~vn~g~l--fgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 233 IR-IVEGLTFQGLPSLQNLKLQRNDISK---LDDGAFYGLEKMEHLNLETNRLQAVNEGWL--FGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ee-eehhhhhcCchhhhhhhhhhcCccc---ccCcceeeecccceeecccchhhhhhcccc--cccchhhhhccchhhhh
Confidence 62 2334556678899999998865433 556677789999999998 43444444544 678899999999 9999
Q ss_pred eeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL 443 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 443 (526)
.+...+.+..++|+.|+++++ .+..+++ .+..+..|+.|.+++. ++..+... .+..+++|++|++++ +.+...++
T Consensus 307 rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~-N~ls~~IE 382 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRS-NELSWCIE 382 (873)
T ss_pred eeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcC-CeEEEEEe
Confidence 999888888999999999986 4555544 4456788999999875 67766533 455679999999988 44555554
Q ss_pred cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
... ..+..+++|+.|++.+ +++++++... +..+++|++|++.+ ..+.++.........|++|.++
T Consensus 383 Daa--------~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 383 DAA--------VAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred cch--------hhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 322 3445689999999998 6899999986 77899999999988 4577776655433478887776
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.1e-21 Score=192.70 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=60.7
Q ss_pred cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccE
Q 039042 351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLRE 429 (526)
Q Consensus 351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 429 (526)
+++|+.|+++ +.++.+. -......+|++|+++.+ .+..+|..+..++.|+.|...+. ++.--..++.++.+.+|++
T Consensus 244 l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhheeccCcCceeeee-ccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHH
Confidence 3445555555 4444442 12222345555555543 34444444445555555544332 3332222244555555555
Q ss_pred EEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcc
Q 039042 430 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK 501 (526)
Q Consensus 430 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~ 501 (526)
+...+ +.++-+|+. +..+++|+.|.+. |+.+-.+|.. ++-++.|+.|++...|++.
T Consensus 321 f~aan-N~LElVPEg------------lcRC~kL~kL~L~-~NrLiTLPea--IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 321 FHAAN-NKLELVPEG------------LCRCVKLQKLKLD-HNRLITLPEA--IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHhhc-cccccCchh------------hhhhHHHHHhccc-ccceeechhh--hhhcCCcceeeccCCcCcc
Confidence 55544 334444433 2244555555553 3445455544 4445555555555555543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=6.1e-20 Score=179.28 Aligned_cols=329 Identities=15% Similarity=0.102 Sum_probs=180.8
Q ss_pred HHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccc
Q 039042 41 DWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNA 119 (526)
Q Consensus 41 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~ 119 (526)
++.+..+..+.+|+...+..+....+|. ......+|+.|+|..+.......+.++-++.|+. -...+.+.+++....
T Consensus 92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sf 169 (873)
T KOG4194|consen 92 HIDFEFFYNLPNLQEVNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSF 169 (873)
T ss_pred cCcHHHHhcCCcceeeeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCC
Confidence 3455667778888888888777777775 2334566888888887766665545666666666 223334444443211
Q ss_pred cccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE
Q 039042 120 NISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE 199 (526)
Q Consensus 120 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~ 199 (526)
..-.++++|+|++|.|+.+-.+.+ ..+.+|.+|.|+++ +++.+ |....+ .|++|+.|+|..| .++.
T Consensus 170 -----p~~~ni~~L~La~N~It~l~~~~F----~~lnsL~tlkLsrN-rittL-p~r~Fk--~L~~L~~LdLnrN-~iri 235 (873)
T KOG4194|consen 170 -----PAKVNIKKLNLASNRITTLETGHF----DSLNSLLTLKLSRN-RITTL-PQRSFK--RLPKLESLDLNRN-RIRI 235 (873)
T ss_pred -----CCCCCceEEeeccccccccccccc----cccchheeeecccC-ccccc-CHHHhh--hcchhhhhhcccc-ceee
Confidence 113567777777777776644443 34667777777775 44444 333332 6777777777776 4544
Q ss_pred E-EeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcc
Q 039042 200 L-IVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLE 278 (526)
Q Consensus 200 l-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~ 278 (526)
+ ...| .++++|+.|.+.+ +++..+..+. +..+..+++|+++.+ ++..+....+ ..+++|+
T Consensus 236 ve~ltF----------qgL~Sl~nlklqr-N~I~kL~DG~--Fy~l~kme~l~L~~N-~l~~vn~g~l-----fgLt~L~ 296 (873)
T KOG4194|consen 236 VEGLTF----------QGLPSLQNLKLQR-NDISKLDDGA--FYGLEKMEHLNLETN-RLQAVNEGWL-----FGLTSLE 296 (873)
T ss_pred ehhhhh----------cCchhhhhhhhhh-cCcccccCcc--eeeecccceeecccc-hhhhhhcccc-----cccchhh
Confidence 4 2333 4677777777766 3444444332 556777777777766 4544443321 3567777
Q ss_pred eEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEE
Q 039042 279 ELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVF 358 (526)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 358 (526)
+|+++.|.+.. +..-.=..+++|++|+++++. ++ .++...+..+..|+.|.++.
T Consensus 297 ~L~lS~NaI~r-ih~d~WsftqkL~~LdLs~N~-i~--~l~~~sf~~L~~Le~LnLs~---------------------- 350 (873)
T KOG4194|consen 297 QLDLSYNAIQR-IHIDSWSFTQKLKELDLSSNR-IT--RLDEGSFRVLSQLEELNLSH---------------------- 350 (873)
T ss_pred hhccchhhhhe-eecchhhhcccceeEeccccc-cc--cCChhHHHHHHHhhhhcccc----------------------
Confidence 77777665421 110011145566777666644 33 35555555555555555552
Q ss_pred eccCceeeccccccccCcccEEEEeccCCc---ccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 359 RCYDLKYILKQESSIMNNLVILHVTNCHRL---INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 359 l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l---~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
+.+..+.+..|..+.+|++|+++.+..- .+....+..+++|+.|++.+. +++.++.. .+..++.|++|++.+
T Consensus 351 --Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 351 --NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGD 425 (873)
T ss_pred --cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCC
Confidence 4444444444444445555555443211 111122334555555555543 45544422 334455555555554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=6.2e-22 Score=185.04 Aligned_cols=396 Identities=16% Similarity=0.116 Sum_probs=227.7
Q ss_pred ccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchh
Q 039042 47 LQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTL 125 (526)
Q Consensus 47 l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~ 125 (526)
++.++.+.-++.+.++...+|. ..++..+|+.|+.+.+.....|.+ ++++..|+. ....+++..+++. ..
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~--~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~------~~ 157 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPE--QIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPED------MV 157 (565)
T ss_pred HHHHHHHHHhhcccchHhhccH--HHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchH------HH
Confidence 3344444555555555555554 335566667777766666665443 455555555 3333444444432 22
Q ss_pred hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
.+.+|..|++.+|.++.. |.+ ..+++.|++|+.-.+ .++.+ |..++ ++.+|..|++.+| .+..+| +|
T Consensus 158 ~~~~l~~l~~~~n~l~~l----~~~-~i~m~~L~~ld~~~N-~L~tl-P~~lg---~l~~L~~LyL~~N-ki~~lP-ef- 224 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKAL----PEN-HIAMKRLKHLDCNSN-LLETL-PPELG---GLESLELLYLRRN-KIRFLP-EF- 224 (565)
T ss_pred HHHHHHHhhccccchhhC----CHH-HHHHHHHHhcccchh-hhhcC-Chhhc---chhhhHHHHhhhc-ccccCC-CC-
Confidence 478889999999988766 333 335888888888764 45665 44444 8999999999998 777777 34
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+++..|++|+++. +.++.+|.. +...++++.+|+++++ +++++|.++ ..+.+|+.|++++|
T Consensus 225 ---------~gcs~L~Elh~g~-N~i~~lpae--~~~~L~~l~vLDLRdN-klke~Pde~------clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 225 ---------PGCSLLKELHVGE-NQIEMLPAE--HLKHLNSLLVLDLRDN-KLKEVPDEI------CLLRSLERLDLSNN 285 (565)
T ss_pred ---------CccHHHHHHHhcc-cHHHhhHHH--Hhcccccceeeecccc-ccccCchHH------HHhhhhhhhcccCC
Confidence 6788888888875 466666655 2447889999999988 788888776 56788999999977
Q ss_pred cccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCC--CccEE--EEeec-----------cccccCCCc-C
Q 039042 286 YIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFP--TLKVL--QIEGY-----------SDWLPKEKV-E 347 (526)
Q Consensus 286 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~--~L~~L--~l~~~-----------~~~~~~~~~-~ 347 (526)
.+. .+|. +++ .|+.|.+.+++.-+ +-...++.=+ -|++| .+.|+ ....+...+ +
T Consensus 286 ~is----~Lp~sLgnl-hL~~L~leGNPlrT---iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 286 DIS----SLPYSLGNL-HLKFLALEGNPLRT---IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred ccc----cCCcccccc-eeeehhhcCCchHH---HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 653 3443 344 77778887766433 1111111000 01111 11111 000011111 1
Q ss_pred ccccccceEEEec-cCceeeccccccccC--cccEEEEeccC-----------------------CcccccCCCccCCCc
Q 039042 348 NGMEVIIRRVFRC-YDLKYILKQESSIMN--NLVILHVTNCH-----------------------RLINLVPSSTSFQNL 401 (526)
Q Consensus 348 ~~~~~~L~~L~l~-~~l~~~~~~~~~~l~--~L~~L~l~~c~-----------------------~l~~l~~~~~~~~~L 401 (526)
.....+.+.|.++ ..+..+|.+.|.... -.+..+++.+. .++.+|..+..+++|
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL 437 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence 1233455666666 666666665554321 24445555432 222333345667888
Q ss_pred CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCC------------cccccCCCeeeeCccCeEecC
Q 039042 402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDD------------DHDAAKDEVIAFSELNELKLL 469 (526)
Q Consensus 402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~------------~~~~~~~~~~~~~~L~~L~l~ 469 (526)
+.|++++. -+.++| .-.+++..|+.|+++.. ....+|...... -...+...+..+.+|..|++.
T Consensus 438 t~L~L~NN-~Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 438 TFLDLSNN-LLNDLP--EEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred eeeecccc-hhhhcc--hhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 88888775 466666 34456677888888773 444444331100 000011123455666666665
Q ss_pred CCccccccCCCCccccCCCccEEeEecCC
Q 039042 470 NLKSLRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 470 ~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
+ +.+..+|.. ++++.+|++|+++|.|
T Consensus 514 n-Ndlq~IPp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 514 N-NDLQQIPPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred C-CchhhCChh--hccccceeEEEecCCc
Confidence 4 456666655 5666666666666654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=3.1e-19 Score=175.63 Aligned_cols=372 Identities=16% Similarity=0.120 Sum_probs=261.7
Q ss_pred eeccccccc--ccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhh
Q 039042 54 ELHELQEQD--VNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEK 129 (526)
Q Consensus 54 ~~l~l~~~~--~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~ 129 (526)
+-.+.+++. +..||. ....+++++.|.|.+......|.. ++++.+|+. +..+.....-++ ...++.
T Consensus 10 rGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGE-------Ls~Lp~ 79 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGE-------LSDLPR 79 (1255)
T ss_pred ecccccCCcCCCCcCch--hHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhh-------hccchh
Confidence 334444433 234555 334567788888877666555665 567777776 444333222222 223889
Q ss_pred hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042 130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE 209 (526)
Q Consensus 130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 209 (526)
||.+.+..|+++.. +.|.+ +..+..|.+|+|+++ .++.+ |..+. .-+++-.|++++| +|+.+|...+
T Consensus 80 LRsv~~R~N~LKns--GiP~d-iF~l~dLt~lDLShN-qL~Ev-P~~LE---~AKn~iVLNLS~N-~IetIPn~lf---- 146 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNS--GIPTD-IFRLKDLTILDLSHN-QLREV-PTNLE---YAKNSIVLNLSYN-NIETIPNSLF---- 146 (1255)
T ss_pred hHHHhhhccccccC--CCCch-hcccccceeeecchh-hhhhc-chhhh---hhcCcEEEEcccC-ccccCCchHH----
Confidence 99999999977643 33555 678899999999996 46665 66554 6788889999998 8888887653
Q ss_pred cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCC----ceeccccccCCccccccCCcceEEEeec
Q 039042 210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPE----FMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
.++..|-.|++++ +++..+|.. +..+.+|++|.+++++- +..+ +.+++|+.|.+++.
T Consensus 147 -----inLtDLLfLDLS~-NrLe~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQL----------PsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 147 -----INLTDLLFLDLSN-NRLEMLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQL----------PSMTSLSVLHMSNT 207 (1255)
T ss_pred -----HhhHhHhhhcccc-chhhhcCHH---HHHHhhhhhhhcCCChhhHHHHhcC----------ccchhhhhhhcccc
Confidence 4678888899986 688888888 77899999999998863 3333 35677888888854
Q ss_pred cccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-c
Q 039042 286 YIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-Y 361 (526)
Q Consensus 286 ~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~ 361 (526)
. .++..+|.. .+.+|..++++.++ ++ ..|. .+-.+++|++|+++.+ .+.+... ...-.+|++|+++ +
T Consensus 208 q--RTl~N~Ptsld~l~NL~dvDlS~N~-Lp--~vPe-cly~l~~LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 208 Q--RTLDNIPTSLDDLHNLRDVDLSENN-LP--IVPE-CLYKLRNLRRLNLSGNKITELNMT---EGEWENLETLNLSRN 278 (1255)
T ss_pred c--chhhcCCCchhhhhhhhhccccccC-CC--cchH-HHhhhhhhheeccCcCceeeeecc---HHHHhhhhhhccccc
Confidence 3 233555553 67789999998754 44 3454 6678899999999955 3322211 0233588999999 8
Q ss_pred CceeeccccccccCcccEEEEeccCC-cccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccce
Q 039042 362 DLKYILKQESSIMNNLVILHVTNCHR-LINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITE 440 (526)
Q Consensus 362 ~l~~~~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 440 (526)
.+..+| ..+..++.|+.|.+.+++. +..+|.+++.+..|+.+...+. .++-+| ..+..+..|+.|.+.. +.+-.
T Consensus 279 QLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVP--EglcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 279 QLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVP--EGLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred hhccch-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCc--hhhhhhHHHHHhcccc-cceee
Confidence 888885 5667789999999987753 5789999999999999988775 677776 6788899999999965 66777
Q ss_pred ecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042 441 IVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD 495 (526)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 495 (526)
+|+. ++.++.|+.|++...+++.--|... ..-.+|+.-+|+
T Consensus 354 LPea------------IHlL~~l~vLDlreNpnLVMPPKP~--da~~~lefYNID 394 (1255)
T KOG0444|consen 354 LPEA------------IHLLPDLKVLDLRENPNLVMPPKPN--DARKKLEFYNID 394 (1255)
T ss_pred chhh------------hhhcCCcceeeccCCcCccCCCCcc--hhhhcceeeecc
Confidence 7764 6689999999999999887655432 112455555544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.4e-18 Score=160.22 Aligned_cols=343 Identities=18% Similarity=0.145 Sum_probs=167.6
Q ss_pred CCcccEEEEecCCCCCCchhhhhhccCccccccccc-chhhhcccccccchhhhhhhhhhcccccccccccccccccccc
Q 039042 75 SSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQS-NELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTC 153 (526)
Q Consensus 75 l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 153 (526)
+.+|..|++.++.....|+.... +++|+++..|.+ ++.++. ..+.+.+|..|++..|.+... | + |.
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~------~lg~l~~L~~LyL~~Nki~~l----P-e-f~ 225 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP------ELGGLESLELLYLRRNKIRFL----P-E-FP 225 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh------hhcchhhhHHHHhhhcccccC----C-C-CC
Confidence 44455555555444444333332 444554333332 223332 222366667777777655544 2 1 44
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.|+.|+.+++..+. ++- .|....+ .++++..|++..| .++.+|.+. ..+++|++|++++ +.++.
T Consensus 226 gcs~L~Elh~g~N~-i~~-lpae~~~--~L~~l~vLDLRdN-klke~Pde~----------clLrsL~rLDlSN-N~is~ 289 (565)
T KOG0472|consen 226 GCSLLKELHVGENQ-IEM-LPAEHLK--HLNSLLVLDLRDN-KLKEVPDEI----------CLLRSLERLDLSN-NDISS 289 (565)
T ss_pred ccHHHHHHHhcccH-HHh-hHHHHhc--ccccceeeecccc-ccccCchHH----------HHhhhhhhhcccC-Ccccc
Confidence 66667777766543 222 3544443 6677777777776 566666554 4566777777775 45666
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc------ccceecccc------cccc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII------TNKFIFSED------LLCK 301 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------~~~~~~~~~------~~~~ 301 (526)
+|.. ++++ +|+.|.+.+++ +..+-.++..+-+...+.-|+. .+.+..+. .+-...+.. ...+
T Consensus 290 Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 290 LPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred CCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 6666 6666 77777777664 2222222111000000111111 00000000 000000111 1224
Q ss_pred ccEEEeeeCCcccccccchhHhhcCC--CccEEEEeec-cccccCC------------------Cc---CccccccceEE
Q 039042 302 LKCLDVEFVDELTTILSLDDFLQRFP--TLKVLQIEGY-SDWLPKE------------------KV---ENGMEVIIRRV 357 (526)
Q Consensus 302 L~~L~l~~~~~l~~~~~~~~~l~~l~--~L~~L~l~~~-~~~~~~~------------------~~---~~~~~~~L~~L 357 (526)
.+.|+++. ..++ ..|...+..-. -...++++.+ ...+|.. .+ ....+++|..|
T Consensus 364 tkiL~~s~-~qlt--~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 364 TKILDVSD-KQLT--LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhcccc-cccc--cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 45555544 2233 44554444322 1333444311 1111110 00 01334556666
Q ss_pred Eec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042 358 FRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 358 ~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 436 (526)
+++ +-+.++|. .+..+..|+.|+++.+ .+..+|.....+..++.+-.++ .++..+++ ..+..+.+|..|++.+ +
T Consensus 441 ~L~NN~Ln~LP~-e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~-~~l~nm~nL~tLDL~n-N 515 (565)
T KOG0472|consen 441 DLSNNLLNDLPE-EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP-SGLKNMRNLTTLDLQN-N 515 (565)
T ss_pred ecccchhhhcch-hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh-HHhhhhhhcceeccCC-C
Confidence 666 44444433 3334455666666655 4444443333333344433333 35555553 3577889999999988 6
Q ss_pred ccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042 437 MITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK 472 (526)
Q Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 472 (526)
.+..+|.. ++++.+|++|.+++.+
T Consensus 516 dlq~IPp~------------LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 516 DLQQIPPI------------LGNMTNLRHLELDGNP 539 (565)
T ss_pred chhhCChh------------hccccceeEEEecCCc
Confidence 68888876 4478999999999965
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=4.9e-17 Score=167.30 Aligned_cols=388 Identities=19% Similarity=0.180 Sum_probs=205.0
Q ss_pred ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchhhhhhhh
Q 039042 53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTLFLEKLE 131 (526)
Q Consensus 53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~~l~~L~ 131 (526)
|+.++++.+.+..||. ..-.+..|+.|+++++.....|.+ ..++.+|++ +..|+.++..+.+. ..+.+|.
T Consensus 47 L~~l~lsnn~~~~fp~--~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n~l~~lP~~~------~~lknl~ 117 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPI--QITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNNRLQSLPASI------SELKNLQ 117 (1081)
T ss_pred eEEeeccccccccCCc--hhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccchhhcCchhH------Hhhhccc
Confidence 6666666666666665 334566777777776665555643 456666666 55555555555322 1255666
Q ss_pred hhcccccccccccccccccccccCCcccEEEeccCCCceec------------------CCcccccccccccccE-Eeee
Q 039042 132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL------------------FSSCTVSNNSFVRLQY-IRIE 192 (526)
Q Consensus 132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l------------------~p~~l~~l~~l~~L~~-L~l~ 192 (526)
+|++++|.+..+... +..+..+..+..++|..+..+ ++. ....+++ |++.
T Consensus 118 ~LdlS~N~f~~~Pl~-----i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~------~i~~l~~~ldLr 186 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLV-----IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI------DIYNLTHQLDLR 186 (1081)
T ss_pred ccccchhccCCCchh-----HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc------chhhhheeeecc
Confidence 666666644432110 112233333333332111100 111 1111222 3333
Q ss_pred ccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccc
Q 039042 193 KCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKK 272 (526)
Q Consensus 193 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 272 (526)
+| .+..+.. ..+++|+.++..+ ..+..+ ..+-++|+.|...+|+-.+ .... +
T Consensus 187 ~N-~~~~~dl------------s~~~~l~~l~c~r-n~ls~l------~~~g~~l~~L~a~~n~l~~-~~~~-------p 238 (1081)
T KOG0618|consen 187 YN-EMEVLDL------------SNLANLEVLHCER-NQLSEL------EISGPSLTALYADHNPLTT-LDVH-------P 238 (1081)
T ss_pred cc-hhhhhhh------------hhccchhhhhhhh-cccceE------EecCcchheeeeccCccee-eccc-------c
Confidence 33 1111111 2344444444432 233333 1123555566655554332 1111 2
Q ss_pred ccCCcceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCcc
Q 039042 273 VFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENG 349 (526)
Q Consensus 273 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~ 349 (526)
...+|+.++++.+.+. .+|. ..+++|+.+.+..+.. . .+|. .+...++|+++.+. |...-+|.. ..
T Consensus 239 ~p~nl~~~dis~n~l~----~lp~wi~~~~nle~l~~n~N~l-~--~lp~-ri~~~~~L~~l~~~~nel~yip~~---le 307 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS----NLPEWIGACANLEALNANHNRL-V--ALPL-RISRITSLVSLSAAYNELEYIPPF---LE 307 (1081)
T ss_pred ccccceeeecchhhhh----cchHHHHhcccceEecccchhH-H--hhHH-HHhhhhhHHHHHhhhhhhhhCCCc---cc
Confidence 3455666666644331 2332 1355666666655443 2 2332 12233444444444 222222211 14
Q ss_pred ccccceEEEec-cCceeecccccccc-------------------------CcccEEEEeccCCcccccCCCccCCCcCE
Q 039042 350 MEVIIRRVFRC-YDLKYILKQESSIM-------------------------NNLVILHVTNCHRLINLVPSSTSFQNLTS 403 (526)
Q Consensus 350 ~~~~L~~L~l~-~~l~~~~~~~~~~l-------------------------~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 403 (526)
.+.+|++|++. +++..+++..+..+ +.|+.|++.++..-....+-+..+.+|+.
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 56788888888 77777766443322 33444444444433444456778899999
Q ss_pred EEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCcc
Q 039042 404 LEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRA 483 (526)
Q Consensus 404 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 483 (526)
|+++.. ++..+|. +....+..|++|++++ +.++.++.. +..++.|+.|..-+ +.+..+|. +
T Consensus 388 LhLsyN-rL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~t------------va~~~~L~tL~ahs-N~l~~fPe---~ 448 (1081)
T KOG0618|consen 388 LHLSYN-RLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDT------------VANLGRLHTLRAHS-NQLLSFPE---L 448 (1081)
T ss_pred eeeccc-ccccCCH-HHHhchHHhHHHhccc-chhhhhhHH------------HHhhhhhHHHhhcC-Cceeechh---h
Confidence 999885 6776664 4677889999999999 678888765 33677888887754 56777773 5
Q ss_pred ccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042 484 LNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN 519 (526)
Q Consensus 484 ~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~ 519 (526)
..++.|+.++++ |.+|+.+--. ..++|+|+.++++
T Consensus 449 ~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 449 AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred hhcCcceEEecc-cchhhhhhhhhhCCCcccceeecc
Confidence 677888888887 5667654322 2334788888887
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-15 Score=156.25 Aligned_cols=358 Identities=16% Similarity=0.135 Sum_probs=184.8
Q ss_pred hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccc-----
Q 039042 46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDN----- 118 (526)
Q Consensus 46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~----- 118 (526)
...++.+|+.+.|..+.....|. ....+.+|..|+++++.+...|.. +..+..++. .+++..+...+..+
T Consensus 86 s~~~~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~ 162 (1081)
T KOG0618|consen 86 SCSNMRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLD 162 (1081)
T ss_pred hhhhhhcchhheeccchhhcCch--hHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhh
Confidence 34455556666666555555554 234456677777777766666443 223333333 22221111111100
Q ss_pred ---cc--ccchhhhhhhhh-hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeee
Q 039042 119 ---AN--ISNTLFLEKLEK-LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIE 192 (526)
Q Consensus 119 ---~~--~~~~~~l~~L~~-L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~ 192 (526)
.. .........|+. |+|.+|.+... - ..++.+|+.|....+. +..+ -. ..++|+.|+..
T Consensus 163 l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~----d---ls~~~~l~~l~c~rn~-ls~l-~~------~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL----D---LSNLANLEVLHCERNQ-LSEL-EI------SGPSLTALYAD 227 (1081)
T ss_pred hhhhhcccchhcchhhhheeeecccchhhhh----h---hhhccchhhhhhhhcc-cceE-Ee------cCcchheeeec
Confidence 00 000111223333 66666654411 0 2356666666666542 3322 11 34567777777
Q ss_pred ccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccc
Q 039042 193 KCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKK 272 (526)
Q Consensus 193 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 272 (526)
.|... .+... ..-.+|++++++. .+++.+|.- ++.+++|+.+.+.++ ++..+|..+ .
T Consensus 228 ~n~l~-~~~~~-----------p~p~nl~~~dis~-n~l~~lp~w---i~~~~nle~l~~n~N-~l~~lp~ri------~ 284 (1081)
T KOG0618|consen 228 HNPLT-TLDVH-----------PVPLNLQYLDISH-NNLSNLPEW---IGACANLEALNANHN-RLVALPLRI------S 284 (1081)
T ss_pred cCcce-eeccc-----------cccccceeeecch-hhhhcchHH---HHhcccceEecccch-hHHhhHHHH------h
Confidence 76433 22111 1234566777665 455555533 556677777766665 445555444 3
Q ss_pred ccCCcceEEEeeccccccceecccc--ccccccEEEeeeCCcccccccchhHhhcCCC-ccEEEEeec------------
Q 039042 273 VFPNLEELIVDAEYIITNKFIFSED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPT-LKVLQIEGY------------ 337 (526)
Q Consensus 273 ~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~-L~~L~l~~~------------ 337 (526)
...+|+.|.+..|++ ..+|.. ....|++|++..+. +. .+|..++.-... |+.|..++.
T Consensus 285 ~~~~L~~l~~~~nel----~yip~~le~~~sL~tLdL~~N~-L~--~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNEL----EYIPPFLEGLKSLRTLDLQSNN-LP--SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhhhHHHHHhhhhhh----hhCCCcccccceeeeeeehhcc-cc--ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 345555555554433 222221 34556666665533 22 344433333222 333333322
Q ss_pred ---------------cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCc
Q 039042 338 ---------------SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNL 401 (526)
Q Consensus 338 ---------------~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L 401 (526)
...||. ...++.|+.|+++ +.+..++...+..+..|++|+++|+ +++.+|..+..++.|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRL 432 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh----hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhh
Confidence 112221 1445678888887 7777777777777788888888876 566666666667777
Q ss_pred CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeee-CccCeEecCCCcc
Q 039042 402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SELNELKLLNLKS 473 (526)
Q Consensus 402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 473 (526)
++|...+. ++..+| -...++.|+.+|++. +++.++..... .. |+|++|++++.+.
T Consensus 433 ~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~------------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSN-QLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEA------------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCC-ceeech---hhhhcCcceEEeccc-chhhhhhhhhh------------CCCcccceeeccCCcc
Confidence 77766543 555555 344667888888854 55665544322 22 6788888877554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2.7e-12 Score=136.17 Aligned_cols=232 Identities=19% Similarity=0.089 Sum_probs=108.6
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE 207 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 207 (526)
++|+.|++.+|+++.+ |. ..++|++|++++| .++.+ |. ..++|++|++.+| .+..++.
T Consensus 222 ~~L~~L~L~~N~Lt~L----P~----lp~~Lk~LdLs~N-~LtsL-P~------lp~sL~~L~Ls~N-~L~~Lp~----- 279 (788)
T PRK15387 222 AHITTLVIPDNNLTSL----PA----LPPELRTLEVSGN-QLTSL-PV------LPPGLLELSIFSN-PLTHLPA----- 279 (788)
T ss_pred cCCCEEEccCCcCCCC----CC----CCCCCcEEEecCC-ccCcc-cC------cccccceeeccCC-chhhhhh-----
Confidence 3566666666666654 21 2466666776664 34443 32 2346666666666 3444432
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
.+.+|+.|+++++ .++.+|.. .++|+.|++++| ++..+|. ...+|+.|++++|.+
T Consensus 280 --------lp~~L~~L~Ls~N-~Lt~LP~~------p~~L~~LdLS~N-~L~~Lp~---------lp~~L~~L~Ls~N~L 334 (788)
T PRK15387 280 --------LPSGLCKLWIFGN-QLTSLPVL------PPGLQELSVSDN-QLASLPA---------LPSELCKLWAYNNQL 334 (788)
T ss_pred --------chhhcCEEECcCC-cccccccc------ccccceeECCCC-ccccCCC---------CcccccccccccCcc
Confidence 1345666666653 45555432 356666666665 4554432 123455666665544
Q ss_pred cccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCcee
Q 039042 288 ITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKY 365 (526)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~ 365 (526)
. .+|. .+.+|+.|++++|. ++ .+|. ..++|+.|.+..+ ...+| ...++|+.|+++ +.+..
T Consensus 335 ~----~LP~-lp~~Lq~LdLS~N~-Ls--~LP~----lp~~L~~L~Ls~N~L~~LP------~l~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 335 T----SLPT-LPSGLQELSVSDNQ-LA--SLPT----LPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNRLTS 396 (788)
T ss_pred c----cccc-cccccceEecCCCc-cC--CCCC----CCcccceehhhccccccCc------ccccccceEEecCCcccC
Confidence 2 2332 22356666666543 22 2332 1234444544422 22222 112345555555 44444
Q ss_pred eccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042 366 ILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC 435 (526)
Q Consensus 366 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 435 (526)
++.. .++|+.|+++++. +..+|. .+.+|+.|+++++ +++.+| ..+..+++|+.|+++++
T Consensus 397 LP~l----~s~L~~LdLS~N~-LssIP~---l~~~L~~L~Ls~N-qLt~LP--~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 397 LPVL----PSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGN 455 (788)
T ss_pred CCCc----ccCCCEEEccCCc-CCCCCc---chhhhhhhhhccC-cccccC--hHHhhccCCCeEECCCC
Confidence 3321 2345555555542 333332 1234445555443 344443 23344455555555543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.9e-12 Score=135.02 Aligned_cols=254 Identities=19% Similarity=0.128 Sum_probs=178.7
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
.+-..|+++++ .++.+ |..+. ++|+.|++.+| .+..+|. ..++|++|+++++ .++.+|
T Consensus 201 ~~~~~LdLs~~-~LtsL-P~~l~-----~~L~~L~L~~N-~Lt~LP~-------------lp~~Lk~LdLs~N-~LtsLP 258 (788)
T PRK15387 201 NGNAVLNVGES-GLTTL-PDCLP-----AHITTLVIPDN-NLTSLPA-------------LPPELRTLEVSGN-QLTSLP 258 (788)
T ss_pred CCCcEEEcCCC-CCCcC-Ccchh-----cCCCEEEccCC-cCCCCCC-------------CCCCCcEEEecCC-ccCccc
Confidence 45678899987 56665 65544 47999999997 6776653 3578999999874 777776
Q ss_pred cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccc
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTT 315 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 315 (526)
.. .++|+.|++++| .+..++. .+.+|+.|++++|.+. .+|. .+++|+.|++++|. ++
T Consensus 259 ~l------p~sL~~L~Ls~N-~L~~Lp~---------lp~~L~~L~Ls~N~Lt----~LP~-~p~~L~~LdLS~N~-L~- 315 (788)
T PRK15387 259 VL------PPGLLELSIFSN-PLTHLPA---------LPSGLCKLWIFGNQLT----SLPV-LPPGLQELSVSDNQ-LA- 315 (788)
T ss_pred Cc------ccccceeeccCC-chhhhhh---------chhhcCEEECcCCccc----cccc-cccccceeECCCCc-cc-
Confidence 43 578999999988 5666652 3567889999987663 3444 35789999999874 44
Q ss_pred cccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC
Q 039042 316 ILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP 393 (526)
Q Consensus 316 ~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 393 (526)
.+|. ...+|+.|.+. |....+|. ..++|++|+++ +.+..++.. ..+|+.|+++++ .+..+|.
T Consensus 316 -~Lp~----lp~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N-~L~~LP~ 379 (788)
T PRK15387 316 -SLPA----LPSELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNN-RLTSLPA 379 (788)
T ss_pred -cCCC----CcccccccccccCccccccc------cccccceEecCCCccCCCCCC----Ccccceehhhcc-ccccCcc
Confidence 3332 12467777777 33444442 22579999998 888877542 357888888875 4555653
Q ss_pred CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCcc
Q 039042 394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKS 473 (526)
Q Consensus 394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 473 (526)
.+.+|+.|+++++ .++.+|.. .++|+.|+++++ .+..+|. .+.+|+.|++++ ++
T Consensus 380 ---l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 380 ---LPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYR-NQ 433 (788)
T ss_pred ---cccccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhcc-Cc
Confidence 2357899999876 57766521 368899999885 4666654 235788899987 56
Q ss_pred ccccCCCCccccCCCccEEeEecCC
Q 039042 474 LRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 474 l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
++.+|.. +..+++|+.|++++++
T Consensus 434 Lt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 434 LTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred ccccChH--HhhccCCCeEECCCCC
Confidence 8888875 6678999999998864
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.27 E-value=3.5e-14 Score=134.43 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=103.9
Q ss_pred hhhhhhccccc-ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 128 EKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 128 ~~L~~L~L~~~-~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
..||.|.+.++ .....-.... ..+++|++.|.+.+|.++++-.-..+++ .+++|++|++..|..+.........
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~---~~~CpnIehL~l~gc~~iTd~s~~sla~--~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF---ASNCPNIEHLALYGCKKITDSSLLSLAR--YCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHH---hhhCCchhhhhhhcceeccHHHHHHHHH--hcchhhhhhhcccchhHHHHHHHHH
Confidence 45788888888 3333222333 2378888888888888776543344555 6788888888888777655433222
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
..+++|++|+++.|+.+++=... .....+..++++...+|..+..-...... ....-+.++++..|.
T Consensus 213 --------~gC~kL~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 213 --------EGCRKLKYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCN 279 (483)
T ss_pred --------HhhhhHHHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhc
Confidence 46888888888888776651111 11334566777777777554422211111 234445555544332
Q ss_pred ccccceecc-ccccccccEEEeeeCCcccccccchhHhh-cCCCccEEEEe
Q 039042 287 IITNKFIFS-EDLLCKLKCLDVEFVDELTTILSLDDFLQ-RFPTLKVLQIE 335 (526)
Q Consensus 287 ~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~l~~L~~L~l~ 335 (526)
..++...+. ...+..|+.++.++|..++ ..+.+.++ +.++|+.+.+.
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~--d~~l~aLg~~~~~L~~l~l~ 328 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDIT--DEVLWALGQHCHNLQVLELS 328 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCc--hHHHHHHhcCCCceEEEecc
Confidence 222211111 1245566777777766655 33333333 34444444444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=1.3e-11 Score=131.69 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=69.7
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE 207 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 207 (526)
+.|+.|++++|.++.+ |.. .+++|++|++++|. ++.+ |..+ ..+|+.|++++| .+..+|..
T Consensus 199 ~~L~~L~Ls~N~LtsL----P~~---l~~nL~~L~Ls~N~-LtsL-P~~l-----~~~L~~L~Ls~N-~L~~LP~~---- 259 (754)
T PRK15370 199 EQITTLILDNNELKSL----PEN---LQGNIKTLYANSNQ-LTSI-PATL-----PDTIQEMELSIN-RITELPER---- 259 (754)
T ss_pred cCCcEEEecCCCCCcC----Chh---hccCCCEEECCCCc-cccC-Chhh-----hccccEEECcCC-ccCcCChh----
Confidence 4566666666666644 322 23566666666653 4443 4322 235666666666 44444432
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
...+|++|++++ +.+..+|.. + .++|+.|++++| +++.+|... .++|+.|++++|.+
T Consensus 260 --------l~s~L~~L~Ls~-N~L~~LP~~---l--~~sL~~L~Ls~N-~Lt~LP~~l--------p~sL~~L~Ls~N~L 316 (754)
T PRK15370 260 --------LPSALQSLDLFH-NKISCLPEN---L--PEELRYLSVYDN-SIRTLPAHL--------PSGITHLNVQSNSL 316 (754)
T ss_pred --------HhCCCCEEECcC-CccCccccc---c--CCCCcEEECCCC-ccccCcccc--------hhhHHHHHhcCCcc
Confidence 123566666663 355555443 1 246666666665 455444321 23456666665544
Q ss_pred cccceeccccccccccEEEeeeC
Q 039042 288 ITNKFIFSEDLLCKLKCLDVEFV 310 (526)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~ 310 (526)
. .+|...+++|+.|++++|
T Consensus 317 t----~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 317 T----ALPETLPPGLKTLEAGEN 335 (754)
T ss_pred c----cCCccccccceeccccCC
Confidence 2 233333345555555554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=2.3e-11 Score=129.89 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=24.7
Q ss_pred ceecccccccccccccccccccCCcccEEEEecCCCCCCchh
Q 039042 53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSA 94 (526)
Q Consensus 53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~ 94 (526)
...++++..+++.+|..+ .++|+.|++++|.....|..
T Consensus 180 ~~~L~L~~~~LtsLP~~I----p~~L~~L~Ls~N~LtsLP~~ 217 (754)
T PRK15370 180 KTELRLKILGLTTIPACI----PEQITTLILDNNELKSLPEN 217 (754)
T ss_pred ceEEEeCCCCcCcCCccc----ccCCcEEEecCCCCCcCChh
Confidence 455666666666777643 25788888888865544654
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=2.4e-12 Score=122.20 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=34.8
Q ss_pred cCcccEEEEeccCCcccc-cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEE
Q 039042 374 MNNLVILHVTNCHRLINL-VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKI 432 (526)
Q Consensus 374 l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 432 (526)
+..|+.+.+++|+.+... -..+...++|+.+++.+|.++..-+...+..++|++++.-.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 456666666666665321 12334556677777777766666655556666666665443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=1.9e-12 Score=121.84 Aligned_cols=277 Identities=15% Similarity=0.190 Sum_probs=161.5
Q ss_pred CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042 76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI 155 (526)
Q Consensus 76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l 155 (526)
+.-+.+.|+.|.....|...|+. +++||+|+|++|+|+.+-... |..+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~----------------------------l~~LRrLdLS~N~Is~I~p~A----F~GL 114 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKT----------------------------LHRLRRLDLSKNNISFIAPDA----FKGL 114 (498)
T ss_pred CcceEEEeccCCcccCChhhccc----------------------------hhhhceecccccchhhcChHh----hhhh
Confidence 45667777777766666655544 777888888888777764333 4457
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
++|.+|.+.++++++++ |..... +|.+|+.|.+.-| .+.-+.... +..+++|..|.+.+ +.++.++
T Consensus 115 ~~l~~Lvlyg~NkI~~l-~k~~F~--gL~slqrLllNan-~i~Cir~~a---------l~dL~~l~lLslyD-n~~q~i~ 180 (498)
T KOG4237|consen 115 ASLLSLVLYGNNKITDL-PKGAFG--GLSSLQRLLLNAN-HINCIRQDA---------LRDLPSLSLLSLYD-NKIQSIC 180 (498)
T ss_pred HhhhHHHhhcCCchhhh-hhhHhh--hHHHHHHHhcChh-hhcchhHHH---------HHHhhhcchhcccc-hhhhhhc
Confidence 77888888887777776 443332 7777777777655 333332211 13466666666655 3455555
Q ss_pred cCcccccCCCCccEEEeccCC-----CceeccccccCCcc-ccccCCcceEEEeeccccccceecccc-ccccccEE---
Q 039042 236 TGDVHMLEFPSLKELWISRCP-----EFMVRFKRTTNDLT-KKVFPNLEELIVDAEYIITNKFIFSED-LLCKLKCL--- 305 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~-----~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L--- 305 (526)
.+. +..+.+++.+.+..++ ++...........+ ...+.......+....+ ...... ..-+++.+
T Consensus 181 ~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri----~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 181 KGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI----NQEDARKFLCSLESLPSR 254 (498)
T ss_pred ccc--ccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh----cccchhhhhhhHHhHHHh
Confidence 543 5566666666665543 11111100000000 00000000000000100 111111 11112222
Q ss_pred EeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEe
Q 039042 306 DVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVT 383 (526)
Q Consensus 306 ~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~ 383 (526)
..+.|.... .-|...++.+++|++|+++.+ .+.+...+| ..+..+++|.+. ++++.+....|..+..|+.|++.
T Consensus 255 ~~~~d~~d~--~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 255 LSSEDFPDS--ICPAKCFKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred hccccCcCC--cChHHHHhhcccceEeccCCCccchhhhhhh--cchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 222332222 567778999999999999966 555555554 667889999999 99999988899999999999999
Q ss_pred ccCCcccccCCCccCCCcCEEEEcc
Q 039042 384 NCHRLINLVPSSTSFQNLTSLEISY 408 (526)
Q Consensus 384 ~c~~l~~l~~~~~~~~~L~~L~l~~ 408 (526)
++..-.-.|..+....+|.+|.+-.
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred CCeeEEEecccccccceeeeeehcc
Confidence 9866555666677778888887764
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=9.3e-11 Score=127.29 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=86.2
Q ss_pred ccccccCcccEEEEeccCCcccccC----C-Cc-cCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceec
Q 039042 369 QESSIMNNLVILHVTNCHRLINLVP----S-ST-SFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIV 442 (526)
Q Consensus 369 ~~~~~l~~L~~L~l~~c~~l~~l~~----~-~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 442 (526)
.....+.+|+.|.+.+|........ . .. .|+++..+.+.+|+.+.+.. ...-.++|+.|++..|..+++++
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCC
Confidence 3455678899999998876532211 1 11 26677778888887777765 23344899999999999888876
Q ss_pred ccccCCcccccCCCeeeeCccCeE-ecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC
Q 039042 443 LADDDDDHDAAKDEVIAFSELNEL-KLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG 506 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~ 506 (526)
.......... ..+..|.++..+ .+.+.+.++.+...+ ..++.|+.+.+..||++.++|..
T Consensus 788 ~~~k~~~~l~--~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 788 PKLKALLELK--ELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred CHHHHhhhcc--cEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 6544322111 134566777777 466656665555442 23566999999999999888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.98 E-value=1.5e-11 Score=102.95 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=65.8
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecccccc-EEEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLE-ELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~-~l~~~~~ 205 (526)
+.+|++|++.+|.++++ |.+ ++.++.|+.|++.-+ ++.. .|..++ .++.|+.|+++++..-+ .+|..+
T Consensus 55 l~nlevln~~nnqie~l----p~~-issl~klr~lnvgmn-rl~~-lprgfg---s~p~levldltynnl~e~~lpgnf- 123 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEEL----PTS-ISSLPKLRILNVGMN-RLNI-LPRGFG---SFPALEVLDLTYNNLNENSLPGNF- 123 (264)
T ss_pred hhhhhhhhcccchhhhc----Chh-hhhchhhhheecchh-hhhc-CccccC---CCchhhhhhccccccccccCCcch-
Confidence 45555556665555555 333 445566666665543 2222 354433 56666666666552211 222222
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
..+..|+.|++++ +.++.+|.. ++.+++|+.|.++++ .+-.+|.++ ..+++|+.|+|.++
T Consensus 124 ---------f~m~tlralyl~d-ndfe~lp~d---vg~lt~lqil~lrdn-dll~lpkei------g~lt~lrelhiqgn 183 (264)
T KOG0617|consen 124 ---------FYMTTLRALYLGD-NDFEILPPD---VGKLTNLQILSLRDN-DLLSLPKEI------GDLTRLRELHIQGN 183 (264)
T ss_pred ---------hHHHHHHHHHhcC-CCcccCChh---hhhhcceeEEeeccC-chhhCcHHH------HHHHHHHHHhcccc
Confidence 1244555556655 344555555 556666666666655 344455554 24556666666655
Q ss_pred cc
Q 039042 286 YI 287 (526)
Q Consensus 286 ~~ 287 (526)
.+
T Consensus 184 rl 185 (264)
T KOG0617|consen 184 RL 185 (264)
T ss_pred ee
Confidence 33
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.89 E-value=6.5e-11 Score=99.15 Aligned_cols=149 Identities=17% Similarity=0.239 Sum_probs=103.2
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++...|.++.|.++.+ |.. |..+.+|+.|++++++ ++.+ |.+++ ++++|+.|++.-+ .+..+|..+
T Consensus 32 ~s~ITrLtLSHNKl~~v----ppn-ia~l~nlevln~~nnq-ie~l-p~~is---sl~klr~lnvgmn-rl~~lprgf-- 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV----PPN-IAELKNLEVLNLSNNQ-IEEL-PTSIS---SLPKLRILNVGMN-RLNILPRGF-- 98 (264)
T ss_pred hhhhhhhhcccCceeec----CCc-HHHhhhhhhhhcccch-hhhc-Chhhh---hchhhhheecchh-hhhcCcccc--
Confidence 77888888888887766 433 6678888888888854 5555 55655 7888888888765 677777776
Q ss_pred hhhcccccccccccceeecccCccccc--cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTS--FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 284 (526)
+.||.|+.|+++++ ++.+ +|.. +..++.|+-|.++++ .++.+|++. ..+++|+-|.+.+
T Consensus 99 --------gs~p~levldltyn-nl~e~~lpgn---ff~m~tlralyl~dn-dfe~lp~dv------g~lt~lqil~lrd 159 (264)
T KOG0617|consen 99 --------GSFPALEVLDLTYN-NLNENSLPGN---FFYMTTLRALYLGDN-DFEILPPDV------GKLTNLQILSLRD 159 (264)
T ss_pred --------CCCchhhhhhcccc-ccccccCCcc---hhHHHHHHHHHhcCC-CcccCChhh------hhhcceeEEeecc
Confidence 77888888888874 3333 4444 666777788888877 677777776 4577888877776
Q ss_pred ccccccceeccc--cccccccEEEeeeCC
Q 039042 285 EYIITNKFIFSE--DLLCKLKCLDVEFVD 311 (526)
Q Consensus 285 ~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 311 (526)
+.+. .+|. +.+..|++|++.+++
T Consensus 160 ndll----~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 160 NDLL----SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred Cchh----hCcHHHHHHHHHHHHhcccce
Confidence 6442 2332 245566666666543
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-09 Score=118.25 Aligned_cols=118 Identities=25% Similarity=0.354 Sum_probs=56.8
Q ss_pred CcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceec-ccccCCccccc
Q 039042 375 NNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIV-LADDDDDHDAA 453 (526)
Q Consensus 375 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~-~~~~~~~~~~~ 453 (526)
+++..+.+.+|...... ....-+++|+.|++..|+.+++..+ ....+..++.+.+.. ..+.... ....+.-.+.
T Consensus 747 ~~l~~~~~~~~~~~r~l-~~~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~l~~i- 821 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDL-TWLLFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELILPF-NKLEGLRMLCSLGGLPQL- 821 (889)
T ss_pred HHHHHHHhhcccccccc-chhhccCcccEEEEecccccccCCC--HHHHhhhcccEEecc-cccccceeeecCCCCcee-
Confidence 35555555666555443 2233567888888888877776542 223333333322211 1122110 1000000000
Q ss_pred CCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC-CCccccCCC
Q 039042 454 KDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC-TNMKGFSRG 506 (526)
Q Consensus 454 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C-~~l~~l~~~ 506 (526)
...-..++.|+.+.+..|++++. +|.+.++.+.+| ..+...|.+
T Consensus 822 ~~~~l~~~~l~~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 822 YWLPLSFLKLEELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred EecccCccchhheehhcCccccc---------CccccccceeccccceeecCCc
Confidence 00001233455555555554444 566778888887 777777765
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=4e-10 Score=106.45 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=89.6
Q ss_pred eecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhh
Q 039042 54 ELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLE 131 (526)
Q Consensus 54 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~ 131 (526)
..++|.-+.++.+|.. ..+.+.+||.|+|+.|....+-+..|+++++|-. +.+.++++.++... ++.+..|+
T Consensus 70 veirLdqN~I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-----F~gL~slq 143 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-----FGGLSSLQ 143 (498)
T ss_pred eEEEeccCCcccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-----hhhHHHHH
Confidence 4456666678888765 4567889999999999888884455888888888 66667777776532 22378888
Q ss_pred hhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccc
Q 039042 132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVL 197 (526)
Q Consensus 132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l 197 (526)
.|.+.-|.+..+-... +-.+++|..|.+.++. ++.+ +.... ..+.+++.+++..++.+
T Consensus 144 rLllNan~i~Cir~~a----l~dL~~l~lLslyDn~-~q~i-~~~tf--~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDA----LRDLPSLSLLSLYDNK-IQSI-CKGTF--QGLAAIKTLHLAQNPFI 201 (498)
T ss_pred HHhcChhhhcchhHHH----HHHhhhcchhcccchh-hhhh-ccccc--cchhccchHhhhcCccc
Confidence 8888888776553332 3358888888888854 3332 44332 27888888888877533
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=1.3e-09 Score=107.22 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=17.6
Q ss_pred CCcCEEEEccCCCccccc---chHHHhhcccccEEEEcccc
Q 039042 399 QNLTSLEISYCNGLKNVL---TFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 399 ~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~i~~c~ 436 (526)
+.|++|++.+| .+++.. .......+++|+.++++++.
T Consensus 250 ~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 45666666655 333111 11223334566666666643
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=5.5e-09 Score=102.76 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=30.0
Q ss_pred CcccEEEEeccCCc----ccccCCCccCCCcCEEEEccCCCcccccchHHHhh----cccccEEEEcccc
Q 039042 375 NNLVILHVTNCHRL----INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKT----LVRLREMKIESCA 436 (526)
Q Consensus 375 ~~L~~L~l~~c~~l----~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~i~~c~ 436 (526)
++|+.|++++|..- ..+...+..+++|++|++++| .+.+......... .+.|++|++.+|.
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 46666666665321 112222334566777777665 3443222222222 2567777776654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1e-08 Score=98.36 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=70.5
Q ss_pred ccCCcccEEEEecCCCCCCch-hhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccc
Q 039042 73 VGSSQLKFLGIHGCRDALNPS-AESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVA 149 (526)
Q Consensus 73 ~~l~~L~~L~L~~c~~~~~p~-~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~ 149 (526)
..+.+||...|.+|.....+. .+...|++++. ++.. .+-.+.. .......+++|+.|+++.|.+...|...-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHH---HHHHHHhcccchhcccccccccCCccccch
Confidence 457888888888876544432 34445554444 2111 0000000 000111255666666666655544433332
Q ss_pred cccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCc
Q 039042 150 AMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLE 229 (526)
Q Consensus 150 ~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 229 (526)
. .+++|+.|.|.+|..- .---.++.. .+|+|+.|++..|..+..-.... ..+..|+.|+++++
T Consensus 194 ~---~l~~lK~L~l~~CGls-~k~V~~~~~--~fPsl~~L~L~~N~~~~~~~~~~----------~i~~~L~~LdLs~N- 256 (505)
T KOG3207|consen 194 L---LLSHLKQLVLNSCGLS-WKDVQWILL--TFPSLEVLYLEANEIILIKATST----------KILQTLQELDLSNN- 256 (505)
T ss_pred h---hhhhhheEEeccCCCC-HHHHHHHHH--hCCcHHHhhhhcccccceecchh----------hhhhHHhhccccCC-
Confidence 2 4555666666655321 100112222 45555555555553111111110 23445555555552
Q ss_pred cccccccCcccccCCCCccEEEeccC
Q 039042 230 KLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 230 ~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
.+.+++.. ...+.+|.|+.|.++.|
T Consensus 257 ~li~~~~~-~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 257 NLIDFDQG-YKVGTLPGLNQLNLSST 281 (505)
T ss_pred cccccccc-cccccccchhhhhcccc
Confidence 33333322 12445555555555554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7e-09 Score=99.52 Aligned_cols=186 Identities=17% Similarity=0.154 Sum_probs=101.8
Q ss_pred hhhhhhhhccccccccccccc-ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042 126 FLEKLEKLELRSINIERIWRN-QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD 204 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~ 204 (526)
.+++++.|+|+.|=+..+... .. ...+|+|+.|+|+.|...- +.+..- -..+++|+.|.+++| ++..-
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i---~eqLp~Le~LNls~Nrl~~--~~~s~~-~~~l~~lK~L~l~~C-Gls~k---- 212 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKI---AEQLPSLENLNLSSNRLSN--FISSNT-TLLLSHLKQLVLNSC-GLSWK---- 212 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHH---HHhcccchhcccccccccC--Cccccc-hhhhhhhheEEeccC-CCCHH----
Confidence 377888888888733321110 01 2367888888888764322 112111 125677888888887 33311
Q ss_pred chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042 205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 284 (526)
.+...+..||+|+.|++..+..+.... +....+..|++|+|+++ ++..++..... ..++.|+.|+++.
T Consensus 213 ----~V~~~~~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~L~~LdLs~N-~li~~~~~~~~----~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 213 ----DVQWILLTFPSLEVLYLEANEIILIKA---TSTKILQTLQELDLSNN-NLIDFDQGYKV----GTLPGLNQLNLSS 280 (505)
T ss_pred ----HHHHHHHhCCcHHHhhhhcccccceec---chhhhhhHHhhccccCC-ccccccccccc----ccccchhhhhccc
Confidence 111112467888888887653221111 11335677888888877 44445433322 4678888888876
Q ss_pred ccccccceeccc------cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec
Q 039042 285 EYIITNKFIFSE------DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY 337 (526)
Q Consensus 285 ~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 337 (526)
+.+ +++...+. ..+++|++|.+..++... .-....+..+++|+.|.+.|+
T Consensus 281 tgi-~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~--w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 281 TGI-ASIAEPDVESLDKTHTFPKLEYLNISENNIRD--WRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cCc-chhcCCCccchhhhcccccceeeecccCcccc--ccccchhhccchhhhhhcccc
Confidence 655 23333333 366788888887765422 111223445566666665543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=4.6e-07 Score=79.24 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=17.5
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
+...++.|+|+++. ++.+ ..++. .+.+|+.|++++| .+..+.. +..++.|++|++++ +.++.
T Consensus 17 n~~~~~~L~L~~n~-I~~I--e~L~~--~l~~L~~L~Ls~N-~I~~l~~-----------l~~L~~L~~L~L~~-N~I~~ 78 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTI--ENLGA--TLDKLEVLDLSNN-QITKLEG-----------LPGLPRLKTLDLSN-NRISS 78 (175)
T ss_dssp ----------------------S--T--T-TT--EEE-TTS---S--TT---------------TT--EEE--S-S---S
T ss_pred cccccccccccccc-cccc--cchhh--hhcCCCEEECCCC-CCccccC-----------ccChhhhhhcccCC-CCCCc
Confidence 44456666666653 2222 22221 3566666666666 4544421 13456666666654 34444
Q ss_pred cccCcccccCCCCccEEEeccC
Q 039042 234 FCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c 255 (526)
+... ....+|+|++|.++++
T Consensus 79 i~~~--l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 79 ISEG--LDKNLPNLQELYLSNN 98 (175)
T ss_dssp -CHH--HHHH-TT--EEE-TTS
T ss_pred cccc--hHHhCCcCCEEECcCC
Confidence 4221 0123555666655554
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.8e-08 Score=89.99 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=30.3
Q ss_pred cccCCcceEEEeeccccccceec-cccccccccEEEeeeCCcccccccchh--HhhcCCCccEEEEe
Q 039042 272 KVFPNLEELIVDAEYIITNKFIF-SEDLLCKLKCLDVEFVDELTTILSLDD--FLQRFPTLKVLQIE 335 (526)
Q Consensus 272 ~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~--~l~~l~~L~~L~l~ 335 (526)
..+|+|.+|+++++....+ +.+ ....++.|++|.+++|..+. |.. .+.+.|+|.+|++.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~----p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDII----PETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCC----hHHeeeeccCcceEEEEec
Confidence 4556666666663322111 111 11245667777777776554 222 23456777777776
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.6e-08 Score=90.16 Aligned_cols=136 Identities=16% Similarity=0.098 Sum_probs=71.1
Q ss_pred ccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc--ccccceec
Q 039042 217 FPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY--IITNKFIF 294 (526)
Q Consensus 217 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~ 294 (526)
-.+|+.|+++.|..+++.... ..+.+|+.|.+|+++.|.-.+......+. ..-++|..|+++|+. +..+.-..
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred cccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHH
Confidence 344555555555444443222 22445666666666666433322222111 234566667776431 11110111
Q ss_pred cccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec
Q 039042 295 SEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC 360 (526)
Q Consensus 295 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~ 360 (526)
-...+|+|.+|++++|..++ .-....+-.++.|++|.++ |. .+.|...+.....|+|.+|++.
T Consensus 308 L~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred HHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhc-CCChHHeeeeccCcceEEEEec
Confidence 22368889999999888877 2233355578888888888 65 0111111112445788888876
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.12 E-value=2e-06 Score=75.26 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=37.3
Q ss_pred hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
..+++.|+|.+|.|+.+-. ++ .+.+|+.|++++|. ++.+ + . +..+++|++|++++| .+..+.....
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~-I~~l-~-~---l~~L~~L~~L~L~~N-~I~~i~~~l~ 84 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQ-ITKL-E-G---LPGLPRLKTLDLSNN-RISSISEGLD 84 (175)
T ss_dssp ------------------S--------TT-TT--EEE-TTS---S---T-T-------TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccccccccc------hhhhhcCCCEEECCCCC-Cccc-c-C---ccChhhhhhcccCCC-CCCccccchH
Confidence 5678999999998876522 22 57899999999974 5544 2 3 337999999999998 6776643210
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP 256 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 256 (526)
..+|+|++|++++ +.+.++... ..+..+|+|++|++.++|
T Consensus 85 ---------~~lp~L~~L~L~~-N~I~~l~~l-~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 85 ---------KNLPNLQELYLSN-NKISDLNEL-EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp ---------HH-TT--EEE-TT-S---SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred ---------HhCCcCCEEECcC-CcCCChHHh-HHHHcCCCcceeeccCCc
Confidence 2589999999987 466665443 346678888888888775
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.08 E-value=7.4e-07 Score=88.62 Aligned_cols=192 Identities=17% Similarity=0.095 Sum_probs=127.4
Q ss_pred ecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc-ccccccchhhhcccccccchhhhhhhhhh
Q 039042 55 LHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES-ANDMQSNELILEDNANISNTLFLEKLEKL 133 (526)
Q Consensus 55 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~-i~~~~~l~~~~~~~~~~~~~~~l~~L~~L 133 (526)
.+.|++...+.||..-....+.--...+++.+++...|.. +..+..|+. +.+-+-+..++.. +..+..|.+|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~------i~~L~~lt~l 126 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEA------ICNLEALTFL 126 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchh------hhhhhHHHHh
Confidence 3445555556666543345667777888999888877664 345555555 4443444444432 2238889999
Q ss_pred cccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccc
Q 039042 134 ELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNN 213 (526)
Q Consensus 134 ~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 213 (526)
+|+.|.+..+ |.. ++.++ |+.|.++++ +++.+ |..++ .++.|..|+.+.| .+..++...
T Consensus 127 ~ls~NqlS~l----p~~-lC~lp-Lkvli~sNN-kl~~l-p~~ig---~~~tl~~ld~s~n-ei~slpsql--------- 185 (722)
T KOG0532|consen 127 DLSSNQLSHL----PDG-LCDLP-LKVLIVSNN-KLTSL-PEEIG---LLPTLAHLDVSKN-EIQSLPSQL--------- 185 (722)
T ss_pred hhccchhhcC----Chh-hhcCc-ceeEEEecC-ccccC-Ccccc---cchhHHHhhhhhh-hhhhchHHh---------
Confidence 9999977755 444 55566 888888885 45554 65555 7888999999888 677776654
Q ss_pred cccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 214 IVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 214 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+.+.+|+.|.+.+ +.+..+|.. +. .=.|..|+++.+ ++..+|.++ ..+..|+.|.+.+|-+
T Consensus 186 -~~l~slr~l~vrR-n~l~~lp~E---l~-~LpLi~lDfScN-kis~iPv~f------r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 186 -GYLTSLRDLNVRR-NHLEDLPEE---LC-SLPLIRLDFSCN-KISYLPVDF------RKMRHLQVLQLENNPL 246 (722)
T ss_pred -hhHHHHHHHHHhh-hhhhhCCHH---Hh-CCceeeeecccC-ceeecchhh------hhhhhheeeeeccCCC
Confidence 5677788888776 456666666 33 334667777755 777777776 5677788887776643
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.90 E-value=4e-07 Score=90.48 Aligned_cols=147 Identities=21% Similarity=0.191 Sum_probs=67.2
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+..|+.+.+..|.+-.+ |.. ++++..|.+|+++.+. +.. .|..+. .|+ |+.|-+++| ++..+|..+
T Consensus 97 f~~Le~liLy~n~~r~i----p~~-i~~L~~lt~l~ls~Nq-lS~-lp~~lC---~lp-Lkvli~sNN-kl~~lp~~i-- 162 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRTI----PEA-ICNLEALTFLDLSSNQ-LSH-LPDGLC---DLP-LKVLIVSNN-KLTSLPEEI-- 162 (722)
T ss_pred HHHHHHHHHHhccceec----chh-hhhhhHHHHhhhccch-hhc-CChhhh---cCc-ceeEEEecC-ccccCCccc--
Confidence 44555555555533322 222 4455555555555532 222 243333 222 555555554 444444433
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+.|..|+.+.| .+..++.. ++.+.+|+.|.+..+ ++..+|.+. ..-.|..||+++|+
T Consensus 163 --------g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn-~l~~lp~El-------~~LpLi~lDfScNk 222 (722)
T KOG0532|consen 163 --------GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRN-HLEDLPEEL-------CSLPLIRLDFSCNK 222 (722)
T ss_pred --------ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhh-hhhhCCHHH-------hCCceeeeecccCc
Confidence 44555555555542 34444444 445555555555554 444444442 12334555555444
Q ss_pred ccccceecccc--ccccccEEEeeeCC
Q 039042 287 IITNKFIFSED--LLCKLKCLDVEFVD 311 (526)
Q Consensus 287 ~~~~~~~~~~~--~~~~L~~L~l~~~~ 311 (526)
+ ..+|.. .+..|++|.+.+++
T Consensus 223 i----s~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 223 I----SYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred e----eecchhhhhhhhheeeeeccCC
Confidence 3 223322 33445555554444
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7.6e-05 Score=73.59 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=75.4
Q ss_pred hhcCCCccEEEEe-eccccccCCCcCccccccceEEEec--cCceeeccccccccCcccEEEEeccCCcccccCCCccCC
Q 039042 323 LQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC--YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQ 399 (526)
Q Consensus 323 l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~--~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 399 (526)
+..+++++.|+++ |....+| ...++|++|.+. ..+..++. .+ .++|+.|++++|..+..+| .
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP------~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP------VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP------E 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC------CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc------c
Confidence 4456888888888 5555554 223567777776 55555532 22 3577777777776665554 3
Q ss_pred CcCEEEEcc--CCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCcccccc
Q 039042 400 NLTSLEISY--CNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSF 477 (526)
Q Consensus 400 ~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 477 (526)
+|+.|++.+ |..+..+| ++|+.|.+.+.......... ...+++|++|.+.+|..+. +
T Consensus 113 sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp------------~~LPsSLk~L~Is~c~~i~-L 171 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARID------------NLISPSLKTLSLTGCSNII-L 171 (426)
T ss_pred ccceEEeCCCCCcccccCc--------chHhheeccccccccccccc------------cccCCcccEEEecCCCccc-C
Confidence 466666653 22233333 45666666442211100000 0134688999998887553 3
Q ss_pred CCCCccccCCCccEEeEecC
Q 039042 478 YSGNRALNFPSLERLLVDDC 497 (526)
Q Consensus 478 ~~~~~~~~~~~L~~L~l~~C 497 (526)
|.. + -.+|+.|.++.+
T Consensus 172 P~~--L--P~SLk~L~ls~n 187 (426)
T PRK15386 172 PEK--L--PESLQSITLHIE 187 (426)
T ss_pred ccc--c--cccCcEEEeccc
Confidence 322 1 267888888764
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.82 E-value=3.2e-05 Score=55.15 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=16.6
Q ss_pred cccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
.+++|++|++++ +.++.++... +..+++|++|++++|
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~~--f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPDA--FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETS-SSESEEETTT--TTTSTTESEEEETSS
T ss_pred CCCCCCEeEccC-CccCccCHHH--HcCCCCCCEEeCcCC
Confidence 445555555543 2344443332 444444555544444
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.79 E-value=7.2e-06 Score=75.40 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=75.3
Q ss_pred CCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEE
Q 039042 327 PTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSL 404 (526)
Q Consensus 327 ~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 404 (526)
+.|+.++++.+ ...+.... ...|.++.|+++ +.+..+. .+..+++|+.|+++++. +..+..+...+.+.+.|
T Consensus 284 q~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESV---KLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhhhhhh---hhccceeEEeccccceeeeh--hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence 45566666533 22222111 455777778777 7777763 36677888888888763 33332333456667777
Q ss_pred EEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042 405 EISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK 472 (526)
Q Consensus 405 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 472 (526)
.+.+. .++++ +.++.+-+|..|++++ ++++++-.- ..++.+|.|+++.+.+.+
T Consensus 358 ~La~N-~iE~L---SGL~KLYSLvnLDl~~-N~Ie~ldeV----------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQN-KIETL---SGLRKLYSLVNLDLSS-NQIEELDEV----------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhh-hHhhh---hhhHhhhhheeccccc-cchhhHHHh----------cccccccHHHHHhhcCCC
Confidence 77764 45544 3666777888888877 345444222 235577888888777754
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=7.4e-06 Score=75.36 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=79.1
Q ss_pred ccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042 352 VIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM 430 (526)
Q Consensus 352 ~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 430 (526)
..|++++++ +.+..+ +++..-+|.++.|+++.+... .+ ..+..+++|+.|++++. .+.... .+-..+-+.+.|
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N-~Ls~~~--Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGN-LLAECV--GWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccc-hhHhhh--hhHhhhcCEeee
Confidence 356666666 555555 344455667777777665322 22 22455667777777664 333332 233345566666
Q ss_pred EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccC
Q 039042 431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFS 504 (526)
Q Consensus 431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~ 504 (526)
.+.+ +.++++. +++.+.+|..|++++ ++++.+.....++.+|+|+.+.+.+.| +..++
T Consensus 358 ~La~-N~iE~LS-------------GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 358 KLAQ-NKIETLS-------------GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred ehhh-hhHhhhh-------------hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 6666 3344442 245678899999987 566666555557789999999998865 44433
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.68 E-value=2.8e-06 Score=79.81 Aligned_cols=177 Identities=16% Similarity=0.091 Sum_probs=77.9
Q ss_pred hhhhhhhcccccccccccccc---------cccccccCCcccEEEeccCCCceecCCccccc-ccccccccEEeeecccc
Q 039042 127 LEKLEKLELRSINIERIWRNQ---------VAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSFVRLQYIRIEKCHV 196 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~---------~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~ 196 (526)
+..|+.|.|.+|++.+.-.+. ...-+..-++|+++...+| ++.+-....++. ++..+.|+++.+..| .
T Consensus 119 ~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~ 196 (382)
T KOG1909|consen 119 CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-G 196 (382)
T ss_pred ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecc-c
Confidence 556666667666554321110 0000224566777766664 332211111110 224566777776665 2
Q ss_pred ccEEEeecchhhhcccccccccccceeecccCcccccc--ccCcccccCCCCccEEEeccCCCceeccccccCCcccccc
Q 039042 197 LEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF--CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVF 274 (526)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l 274 (526)
|..-... -....+..+++|++|++.++..-..- ..+ ..+..+++|++|.+.+| .++.--...+.+.+....
T Consensus 197 I~~eG~~-----al~eal~~~~~LevLdl~DNtft~egs~~La-kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 197 IRPEGVT-----ALAEALEHCPHLEVLDLRDNTFTLEGSVALA-KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESA 269 (382)
T ss_pred ccCchhH-----HHHHHHHhCCcceeeecccchhhhHHHHHHH-HHhcccchheeeccccc-ccccccHHHHHHHHhccC
Confidence 2211100 00011245677777777764321110 000 11445677777777777 333211111111122346
Q ss_pred CCcceEEEeeccccccc---eeccccccccccEEEeeeCCc
Q 039042 275 PNLEELIVDAEYIITNK---FIFSEDLLCKLKCLDVEFVDE 312 (526)
Q Consensus 275 ~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~ 312 (526)
|+|+.|.+.+|.+...- -..+....+.|+.|.++.|+.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 67777777766553210 001122345566666665554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.66 E-value=0.00011 Score=52.41 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=27.3
Q ss_pred cceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042 353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC 409 (526)
Q Consensus 353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 409 (526)
+|++|++. +.+..++++.+..+++|++|+++++ .+..+++ .+..+++|++|+++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555 5555555555555555555555533 2233322 2344455555555443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00019 Score=70.85 Aligned_cols=131 Identities=19% Similarity=0.303 Sum_probs=80.5
Q ss_pred cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccE
Q 039042 351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLRE 429 (526)
Q Consensus 351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 429 (526)
+.+++.|+++ ..+..++ .-.++|++|.+++|..+..+|..+ +++|+.|++++|.++..+| ++|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cccce
Confidence 4667777777 6666664 123468888888877776665432 4577888888776666554 45677
Q ss_pred EEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccc--cccCCCCccccC-CCccEEeEecCCCccccCCC
Q 039042 430 MKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSL--RSFYSGNRALNF-PSLERLLVDDCTNMKGFSRG 506 (526)
Q Consensus 430 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~ 506 (526)
|++.. .....+.. .+++|+.|.+.+++.. ..++. .+ ++|++|.+.+|..+ .+|.+
T Consensus 117 L~L~~-n~~~~L~~---------------LPssLk~L~I~~~n~~~~~~lp~-----~LPsSLk~L~Is~c~~i-~LP~~ 174 (426)
T PRK15386 117 LEIKG-SATDSIKN---------------VPNGLTSLSINSYNPENQARIDN-----LISPSLKTLSLTGCSNI-ILPEK 174 (426)
T ss_pred EEeCC-CCCccccc---------------CcchHhheecccccccccccccc-----ccCCcccEEEecCCCcc-cCccc
Confidence 77653 22222211 3467888887543321 11121 12 68999999999865 34543
Q ss_pred CCCCcccceEEec
Q 039042 507 ELSTPVLHKVQLN 519 (526)
Q Consensus 507 ~~~~~~L~~l~l~ 519 (526)
. +.+|+.|+++
T Consensus 175 L--P~SLk~L~ls 185 (426)
T PRK15386 175 L--PESLQSITLH 185 (426)
T ss_pred c--cccCcEEEec
Confidence 2 3688888876
No 42
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.52 E-value=6.5e-06 Score=85.84 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeecc-ccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC-HVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT 232 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 232 (526)
.+++|+.|.+.+|..+....-..+.. ..++|++|++++| ......+..... ....+++|+.|+++.+..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLL------LLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhh------hhhhcCCcCccchhhhhccC
Confidence 46777777777777665421112222 6777888887763 222221110000 01356777888887776555
Q ss_pred ccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc--cceeccccccccccEEEee
Q 039042 233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT--NKFIFSEDLLCKLKCLDVE 308 (526)
Q Consensus 233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 308 (526)
+.... .....+++|++|.+.+|..++...... +...+++|++|+++.+...+ .+... ...+++|+.+.+.
T Consensus 258 d~~l~-~l~~~c~~L~~L~l~~c~~lt~~gl~~----i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 258 DIGLS-ALASRCPNLETLSLSNCSNLTDEGLVS----IAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLL 329 (482)
T ss_pred chhHH-HHHhhCCCcceEccCCCCccchhHHHH----HHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhh
Confidence 43222 112237788888877776543322211 11567778888888553321 12222 2245665555443
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=1.5e-05 Score=85.05 Aligned_cols=109 Identities=23% Similarity=0.271 Sum_probs=58.6
Q ss_pred hhhhhhhccccc-ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 127 LEKLEKLELRSI-NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~-~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
-.+|++|++++. .+...|...... .+|+|++|.+.+-....+-+ ..+.+ .+++|+.||++++ ++..+..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~---~LPsL~sL~i~~~~~~~~dF-~~lc~--sFpNL~sLDIS~T-nI~nl~G--- 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGT---MLPSLRSLVISGRQFDNDDF-SQLCA--SFPNLRSLDISGT-NISNLSG--- 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhh---hCcccceEEecCceecchhH-HHHhh--ccCccceeecCCC-CccCcHH---
Confidence 567777888777 445555543322 56777777777633221100 11222 6777777777776 5555411
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
++.+++|+.|.+.+..- .....- ..+.++++|+.|+++.-
T Consensus 191 --------IS~LknLq~L~mrnLe~-e~~~~l-~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 191 --------ISRLKNLQVLSMRNLEF-ESYQDL-IDLFNLKKLRVLDISRD 230 (699)
T ss_pred --------HhccccHHHHhccCCCC-CchhhH-HHHhcccCCCeeecccc
Confidence 25667777776665422 211110 12556666666666654
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.41 E-value=0.00014 Score=73.89 Aligned_cols=144 Identities=21% Similarity=0.195 Sum_probs=65.7
Q ss_pred ccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccc-
Q 039042 219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSED- 297 (526)
Q Consensus 219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 297 (526)
+|++|++++ +.+..++.. +..+++|+.|.+++| ++..++... ...++|+.|+++++.+ ..+|..
T Consensus 141 nL~~L~l~~-N~i~~l~~~---~~~l~~L~~L~l~~N-~l~~l~~~~------~~~~~L~~L~ls~N~i----~~l~~~~ 205 (394)
T COG4886 141 NLKELDLSD-NKIESLPSP---LRNLPNLKNLDLSFN-DLSDLPKLL------SNLSNLNNLDLSGNKI----SDLPPEI 205 (394)
T ss_pred hcccccccc-cchhhhhhh---hhccccccccccCCc-hhhhhhhhh------hhhhhhhheeccCCcc----ccCchhh
Confidence 555555554 344444322 445566666666555 444444332 1455566666665544 223332
Q ss_pred -ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecccccccc
Q 039042 298 -LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIM 374 (526)
Q Consensus 298 -~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l 374 (526)
....|+++.++++..+. . ...+..+.++..+.+.+. ...++.. ...++++++|++. +.+..++. +..+
T Consensus 206 ~~~~~L~~l~~~~N~~~~---~-~~~~~~~~~l~~l~l~~n~~~~~~~~---~~~l~~l~~L~~s~n~i~~i~~--~~~~ 276 (394)
T COG4886 206 ELLSALEELDLSNNSIIE---L-LSSLSNLKNLSGLELSNNKLEDLPES---IGNLSNLETLDLSNNQISSISS--LGSL 276 (394)
T ss_pred hhhhhhhhhhhcCCccee---c-chhhhhcccccccccCCceeeeccch---hccccccceecccccccccccc--cccc
Confidence 33346666666553322 1 113344444444443322 1111000 0333445555555 55555433 4445
Q ss_pred CcccEEEEeccC
Q 039042 375 NNLVILHVTNCH 386 (526)
Q Consensus 375 ~~L~~L~l~~c~ 386 (526)
.+++.|++++..
T Consensus 277 ~~l~~L~~s~n~ 288 (394)
T COG4886 277 TNLRELDLSGNS 288 (394)
T ss_pred CccCEEeccCcc
Confidence 566666665543
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.31 E-value=0.00016 Score=73.26 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhh-hhhhhhcccccccccccccccccc
Q 039042 73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFL-EKLEKLELRSINIERIWRNQVAAM 151 (526)
Q Consensus 73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~l~~~~~~~~~~~ 151 (526)
..++.++.|++.++.....|... .. + ++|+.|++++|.+..+. ..
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~-~~----------------------------~~~nL~~L~l~~N~i~~l~----~~- 158 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLI-GL----------------------------LKSNLKELDLSDNKIESLP----SP- 158 (394)
T ss_pred hcccceeEEecCCcccccCcccc-cc----------------------------chhhcccccccccchhhhh----hh-
Confidence 34578899999988877663311 11 3 25666666666555431 11
Q ss_pred cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042 152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL 231 (526)
Q Consensus 152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 231 (526)
+..+++|+.|++++|+ +.++ |...+ ..++|+.|+++++ .+..++... +....|++|.+++.. .
T Consensus 159 ~~~l~~L~~L~l~~N~-l~~l-~~~~~---~~~~L~~L~ls~N-~i~~l~~~~----------~~~~~L~~l~~~~N~-~ 221 (394)
T COG4886 159 LRNLPNLKNLDLSFND-LSDL-PKLLS---NLSNLNNLDLSGN-KISDLPPEI----------ELLSALEELDLSNNS-I 221 (394)
T ss_pred hhccccccccccCCch-hhhh-hhhhh---hhhhhhheeccCC-ccccCchhh----------hhhhhhhhhhhcCCc-c
Confidence 3356666666666643 3333 32211 3556666666665 455554421 123335666655432 2
Q ss_pred cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042 232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (526)
...+.. +..+.++..+.+.++ .+..++... ..+++++.|+++++.+.. +.. .....+++.|+++++.
T Consensus 222 ~~~~~~---~~~~~~l~~l~l~~n-~~~~~~~~~------~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 222 IELLSS---LSNLKNLSGLELSNN-KLEDLPESI------GNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNS 288 (394)
T ss_pred eecchh---hhhcccccccccCCc-eeeeccchh------ccccccceeccccccccc-ccc--ccccCccCEEeccCcc
Confidence 222222 334555555554443 222211111 245556666666554421 111 2334566666666544
Q ss_pred c
Q 039042 312 E 312 (526)
Q Consensus 312 ~ 312 (526)
.
T Consensus 289 ~ 289 (394)
T COG4886 289 L 289 (394)
T ss_pred c
Confidence 3
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=5.3e-05 Score=80.92 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCcccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042 75 SSQLKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA 150 (526)
Q Consensus 75 l~~L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~ 150 (526)
-.+|++|++++...... |...-..+|.|+. +.+..-...-+. .....+++|+.||+++++++.++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~TnI~nl~G----- 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGTNISNLSG----- 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-----HHhhccCccceeecCCCCccCcHH-----
Confidence 36788888877655544 5554445666666 443322111110 011127888888888887776622
Q ss_pred ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeeccc
Q 039042 151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYD 227 (526)
Q Consensus 151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 227 (526)
++.++||+.|.+.+-.... ...... +-.|++|+.||++.-...... .....+.+.. ..+|+||.||.++
T Consensus 191 -IS~LknLq~L~mrnLe~e~--~~~l~~-LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~---~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 191 -ISRLKNLQVLSMRNLEFES--YQDLID-LFNLKKLRVLDISRDKNNDDT-KIIEQYLECG---MVLPELRFLDCSG 259 (699)
T ss_pred -HhccccHHHHhccCCCCCc--hhhHHH-HhcccCCCeeeccccccccch-HHHHHHHHhc---ccCccccEEecCC
Confidence 6688888888887654332 111111 226888888888876443332 1111111111 3477888888775
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=1.5e-05 Score=83.23 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=16.9
Q ss_pred cccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042 299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
|++|++|.+.+|..+++ .--......++.|++|+++
T Consensus 268 c~~L~~L~l~~c~~lt~-~gl~~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTD-EGLVSIAERCPSLRELDLS 303 (482)
T ss_pred CCCcceEccCCCCccch-hHHHHHHHhcCcccEEeee
Confidence 45555555555554431 1112233345555555555
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.00 E-value=2.2e-05 Score=80.54 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=90.8
Q ss_pred ccccCCcccEEEEecCCCCCCchhhhhhccCccc---ccccccchhhhccc-ccccchhhhhhhhhhccccccccccccc
Q 039042 71 VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES---ANDMQSNELILEDN-ANISNTLFLEKLEKLELRSINIERIWRN 146 (526)
Q Consensus 71 ~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~---i~~~~~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~l~~~~~~ 146 (526)
..-.|.+||+|.+.+|..... ..+..--..|+. ....+.+++++..- ..++..-.--.|..-+.++|.+.-.-
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD-- 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD-- 180 (1096)
T ss_pred eeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH--
Confidence 344689999999999985543 000001112333 22223333433210 00011111234666666666544220
Q ss_pred ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecc
Q 039042 147 QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMY 226 (526)
Q Consensus 147 ~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 226 (526)
.+ +.-++.|+.|+|++|+ ++.+ ..+. .+++|++|+|++| .+..+|.... .++. |..|.++
T Consensus 181 --~S-Lqll~ale~LnLshNk-~~~v--~~Lr---~l~~LkhLDlsyN-~L~~vp~l~~---------~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 181 --ES-LQLLPALESLNLSHNK-FTKV--DNLR---RLPKLKHLDLSYN-CLRHVPQLSM---------VGCK-LQLLNLR 240 (1096)
T ss_pred --HH-HHHHHHhhhhccchhh-hhhh--HHHH---hcccccccccccc-hhccccccch---------hhhh-heeeeec
Confidence 01 2346777777777754 3333 2222 6777777777777 5666654321 1223 7777776
Q ss_pred cCccccccccCcccccCCCCccEEEeccCCCceeccc-cccCCccccccCCcceEEEeeccc
Q 039042 227 DLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK-RTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 227 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+ +.++.+.. +.++.+|+.|+++++ -+..... +.. ..+..|+.|++.||-+
T Consensus 241 n-N~l~tL~g----ie~LksL~~LDlsyN-ll~~hseL~pL-----wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 N-NALTTLRG----IENLKSLYGLDLSYN-LLSEHSELEPL-----WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-cHHHhhhh----HHhhhhhhccchhHh-hhhcchhhhHH-----HHHHHHHHHhhcCCcc
Confidence 5 34444421 446777777777765 2222211 000 2345666777765533
No 49
>PLN03150 hypothetical protein; Provisional
Probab=96.92 E-value=0.0016 Score=69.80 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=54.2
Q ss_pred ceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcc-cccchHHHhhcccccEEE
Q 039042 354 IRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLK-NVLTFSIAKTLVRLREMK 431 (526)
Q Consensus 354 L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~ 431 (526)
++.|++. +.+....+..+..+++|+.|++++|.....+|..+..+++|+.|+++++ ++. .+| ..++.+++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP--~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIP--ESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCc--hHHhcCCCCCEEE
Confidence 5566666 6665555556666777777777776554556556666777777777765 333 333 4556677777777
Q ss_pred Eccccccceeccc
Q 039042 432 IESCAMITEIVLA 444 (526)
Q Consensus 432 i~~c~~l~~~~~~ 444 (526)
++++.....+|..
T Consensus 497 Ls~N~l~g~iP~~ 509 (623)
T PLN03150 497 LNGNSLSGRVPAA 509 (623)
T ss_pred CcCCcccccCChH
Confidence 7765544445443
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.76 E-value=0.0015 Score=69.94 Aligned_cols=81 Identities=17% Similarity=0.074 Sum_probs=35.3
Q ss_pred ccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccC
Q 039042 158 LTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTG 237 (526)
Q Consensus 158 L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 237 (526)
++.|+|+++. +...+|..+. .+++|+.|++++|.....+|..+ +.+++|+.|+++++.-...+|..
T Consensus 420 v~~L~L~~n~-L~g~ip~~i~---~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDIS---KLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEECCCCC-ccccCCHHHh---CCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchH
Confidence 4445555432 2222233333 45555555555553222333222 34555555555543222233333
Q ss_pred cccccCCCCccEEEeccC
Q 039042 238 DVHMLEFPSLKELWISRC 255 (526)
Q Consensus 238 ~~~~~~l~~L~~L~l~~c 255 (526)
++.+++|+.|++++|
T Consensus 486 ---l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 486 ---LGQLTSLRILNLNGN 500 (623)
T ss_pred ---HhcCCCCCEEECcCC
Confidence 445555555555554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00078 Score=62.37 Aligned_cols=38 Identities=5% Similarity=0.022 Sum_probs=19.0
Q ss_pred CCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042 399 QNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 399 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 436 (526)
+.+++|+...|+...-.........+|++..+.+..|+
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 34555555555433222222344456666666666654
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0016 Score=60.45 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=88.9
Q ss_pred cccceeccccccccccccccccc----ccCCcccEEEEecCCCCCCchhhh-hhccCccc-ccccccchhhhcccccccc
Q 039042 50 IEDLELHELQEQDVNYFANELVR----VGSSQLKFLGIHGCRDALNPSAES-KRQRQEES-ANDMQSNELILEDNANISN 123 (526)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~----~~l~~L~~L~L~~c~~~~~p~~~l-~~l~~L~~-i~~~~~l~~~~~~~~~~~~ 123 (526)
..+++.++|.++.+. +|-+. ..+|.|++|+++.+..... ...+ ..+.+|++ +.+-+.+..- ...+.
T Consensus 70 ~~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~----~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWT----QSTSS 141 (418)
T ss_pred hhhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChh----hhhhh
Confidence 556677777654443 33222 3578888888887654433 1111 23445555 3322222111 01122
Q ss_pred hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042 124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV 203 (526)
Q Consensus 124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~ 203 (526)
...++.++.|+++.|++..+-..+-.. -.--+.+++|+.-+|......--..+++ .++++..+-+..|+ ++....+
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~-e~~s~~v~tlh~~~c~~~~w~~~~~l~r--~Fpnv~sv~v~e~P-lK~~s~e 217 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCI-EDWSTEVLTLHQLPCLEQLWLNKNKLSR--IFPNVNSVFVCEGP-LKTESSE 217 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccc-cccchhhhhhhcCCcHHHHHHHHHhHHh--hcccchheeeecCc-ccchhhc
Confidence 234677777777777332111110000 0012345666666554221110111222 45566666666652 3333222
Q ss_pred cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCce
Q 039042 204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM 259 (526)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 259 (526)
... ..+|.+--|+++. +++.+|... ..+..|++|..|.+++.+-..
T Consensus 218 k~s--------e~~p~~~~LnL~~-~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 218 KGS--------EPFPSLSCLNLGA-NNIDSWASV-DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccC--------CCCCcchhhhhcc-cccccHHHH-HHHcCCchhheeeccCCcccc
Confidence 111 3456565666654 455555443 346677888887777765443
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00023 Score=65.14 Aligned_cols=104 Identities=20% Similarity=0.167 Sum_probs=73.5
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+.+.++|+.-+|++.++-. +..++.|+.|.|+-| +++.+.| ++.+.+|++|+|..| .|..+...+|-
T Consensus 18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvN-kIssL~p-----l~rCtrLkElYLRkN-~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVN-KISSLAP-----LQRCTRLKELYLRKN-CIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCCccHHHH------HHhcccceeEEeecc-ccccchh-----HHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 7788899999998887633 336899999999985 4555544 558999999999998 77777655543
Q ss_pred hhhcccccccccccceeecccCccccccccCc--ccccCCCCccEEE
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD--VHMLEFPSLKELW 251 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~l~~L~~L~ 251 (526)
.++|+|+.|.+..++.-..-.... ..+..+|+|++|+
T Consensus 85 --------knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 --------KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred --------hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 788999999988755433221110 1244577777775
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.21 E-value=0.001 Score=62.97 Aligned_cols=214 Identities=14% Similarity=0.047 Sum_probs=96.9
Q ss_pred Hhccccccceecccccccc-ccccccc--ccccCCcccEEEEecCCCCCCchhhhh-hccCcccccccccchhhhccccc
Q 039042 45 LQLQGIEDLELHELQEQDV-NYFANEL--VRVGSSQLKFLGIHGCRDALNPSAESK-RQRQEESANDMQSNELILEDNAN 120 (526)
Q Consensus 45 ~~l~~~~~L~~l~l~~~~~-~~~~~~~--~~~~l~~L~~L~L~~c~~~~~p~~~l~-~l~~L~~i~~~~~l~~~~~~~~~ 120 (526)
..|.+...|+.++|+.+-. +..+..+ -..++..|++|.|.+|+....-...++ .+..|.+ .+.+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~------~kk~------ 153 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAV------NKKA------ 153 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHH------Hhcc------
Confidence 4555566788888887543 2233222 235689999999999987665111111 1111111 0011
Q ss_pred ccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccc---c-cccccccccEEeeecccc
Q 039042 121 ISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCT---V-SNNSFVRLQYIRIEKCHV 196 (526)
Q Consensus 121 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l---~-~l~~l~~L~~L~l~~~~~ 196 (526)
...++||++....|++...-.......+...+.|+.+.+..+..- |..+ + .+..+++|+.|++..|.
T Consensus 154 ----~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~----~eG~~al~eal~~~~~LevLdl~DNt- 224 (382)
T KOG1909|consen 154 ----ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR----PEGVTALAEALEHCPHLEVLDLRDNT- 224 (382)
T ss_pred ----CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc----CchhHHHHHHHHhCCcceeeecccch-
Confidence 114566666666664442211000000223456666666654321 1111 0 02356666666666652
Q ss_pred ccEEEeecchhhhcccccccccccceeecccCcccccc---ccCcccccCCCCccEEEeccCCCceeccccccCCccccc
Q 039042 197 LEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF---CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKV 273 (526)
Q Consensus 197 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 273 (526)
+..-. .......+..+++|++|++++|. ++.- ....+.-...|+|++|.+.+|.. +.-...... .-...
T Consensus 225 ft~eg-----s~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeI-t~da~~~la-~~~~e 296 (382)
T KOG1909|consen 225 FTLEG-----SVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEI-TRDAALALA-ACMAE 296 (382)
T ss_pred hhhHH-----HHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchh-HHHHHHHHH-HHHhc
Confidence 11110 01111113456666777766663 2210 00000122366777777766632 111000000 00023
Q ss_pred cCCcceEEEeeccc
Q 039042 274 FPNLEELIVDAEYI 287 (526)
Q Consensus 274 l~~L~~L~l~~~~~ 287 (526)
.+.|.+|++++|.+
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 56777777776655
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.14 E-value=0.0058 Score=39.97 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=15.2
Q ss_pred ccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
+|++|+++++ .+++++.. +.++++|++|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~---l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE---LSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH---GTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCch---HhCCCCCCEEEecCC
Confidence 4555555542 44444432 445555555555555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.98 E-value=0.0051 Score=40.26 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=14.7
Q ss_pred cccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 157 NLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 157 ~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+|++|++++| .+++++| .++ .|++|++|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~-~l~---~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPP-ELS---NLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGG-HGT---TCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCc-hHh---CCCCCCEEEecCC
Confidence 4555555554 2333322 222 4555555555555
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.60 E-value=0.0036 Score=63.85 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=35.6
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+..|+.|++.+|.++.+-. +..+.+|+.+++++|.. ..+-+..+ ..+.+++.+++.++
T Consensus 139 l~~L~~L~l~~N~i~~~~~------~~~l~~L~~l~l~~n~i-~~ie~~~~---~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDISG------LESLKSLKLLDLSYNRI-VDIENDEL---SELISLEELDLGGN 196 (414)
T ss_pred ccchhhheeccCcchhccC------CccchhhhcccCCcchh-hhhhhhhh---hhccchHHHhccCC
Confidence 5568888888887665421 22477788888887643 32212001 16777888888776
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.58 E-value=0.014 Score=51.33 Aligned_cols=11 Identities=36% Similarity=0.595 Sum_probs=5.7
Q ss_pred CCCCccEEEec
Q 039042 243 EFPSLKELWIS 253 (526)
Q Consensus 243 ~l~~L~~L~l~ 253 (526)
.+|+|+.|+..
T Consensus 138 klp~l~~LDF~ 148 (233)
T KOG1644|consen 138 KLPSLRTLDFQ 148 (233)
T ss_pred ecCcceEeehh
Confidence 45555555544
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.48 E-value=0.0016 Score=66.32 Aligned_cols=57 Identities=25% Similarity=0.228 Sum_probs=26.0
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+.+|+.|++.+|.++.+... +..+++|++|+++++ .++.+- . +..++.|+.|++.+|
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~-----l~~~~~L~~L~ls~N-~I~~i~--~---l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENL-----LSSLVNLQVLDLSFN-KITKLE--G---LSTLTLLKELNLSGN 150 (414)
T ss_pred ccceeeeeccccchhhcccc-----hhhhhcchheecccc-cccccc--c---hhhccchhhheeccC
Confidence 45555555555555443110 114555555555553 233221 1 224445555555555
No 60
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0018 Score=56.73 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=22.7
Q ss_pred ccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccce
Q 039042 396 TSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITE 440 (526)
Q Consensus 396 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 440 (526)
..+++++.|.+.+|..+.+.....+.+..++|+.|+|++|+.+++
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 344555555555555555543333334445555555555554443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.09 E-value=0.027 Score=49.58 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042 182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR 261 (526)
Q Consensus 182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 261 (526)
++++|..|.+.+| .|..+..... ..+++|+.|.+.+ +++.++..- ..+..||.|++|.+-+++.-..-
T Consensus 62 ~l~rL~tLll~nN-rIt~I~p~L~---------~~~p~l~~L~Ltn-Nsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~ 129 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRIDPDLD---------TFLPNLKTLILTN-NSIQELGDL-DPLASCPKLEYLTLLGNPVEHKK 129 (233)
T ss_pred CccccceEEecCC-cceeeccchh---------hhccccceEEecC-cchhhhhhc-chhccCCccceeeecCCchhccc
Confidence 5666666666665 5555543321 2456666666665 344443221 12446777777777665321100
Q ss_pred c-ccccCCccccccCCcceEEEe
Q 039042 262 F-KRTTNDLTKKVFPNLEELIVD 283 (526)
Q Consensus 262 ~-~~~~~~~~~~~l~~L~~L~l~ 283 (526)
- ..++ -..+|+|+.||..
T Consensus 130 ~YR~yv----l~klp~l~~LDF~ 148 (233)
T KOG1644|consen 130 NYRLYV----LYKLPSLRTLDFQ 148 (233)
T ss_pred CceeEE----EEecCcceEeehh
Confidence 0 0111 1467888888887
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.92 E-value=0.00078 Score=69.68 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=36.5
Q ss_pred ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccC
Q 039042 298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMN 375 (526)
Q Consensus 298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~ 375 (526)
.++.|+.|+++.+.... ...+..++.|++|+|+.+ ...+|.-.. .++ .|..|.+. +.++.+. ++.++.
T Consensus 185 ll~ale~LnLshNk~~~-----v~~Lr~l~~LkhLDlsyN~L~~vp~l~~--~gc-~L~~L~lrnN~l~tL~--gie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK-----VDNLRRLPKLKHLDLSYNCLRHVPQLSM--VGC-KLQLLNLRNNALTTLR--GIENLK 254 (1096)
T ss_pred HHHHhhhhccchhhhhh-----hHHHHhcccccccccccchhccccccch--hhh-hheeeeecccHHHhhh--hHHhhh
Confidence 34566666666655433 225556666666666622 222221111 111 25555555 4444432 344455
Q ss_pred cccEEEEec
Q 039042 376 NLVILHVTN 384 (526)
Q Consensus 376 ~L~~L~l~~ 384 (526)
+|+.||+++
T Consensus 255 sL~~LDlsy 263 (1096)
T KOG1859|consen 255 SLYGLDLSY 263 (1096)
T ss_pred hhhccchhH
Confidence 555555554
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.0017 Score=59.55 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=71.2
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+.+.+.|+.++| .+.++ ++.+ .++.|+.|.|+-| .|..+... ..+++|++|++.. +.+.+
T Consensus 17 dl~~vkKLNcwg~-~L~DI---sic~--kMp~lEVLsLSvN-kIssL~pl-----------~rCtrLkElYLRk-N~I~s 77 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI---SICE--KMPLLEVLSLSVN-KISSLAPL-----------QRCTRLKELYLRK-NCIES 77 (388)
T ss_pred HHHHhhhhcccCC-CccHH---HHHH--hcccceeEEeecc-ccccchhH-----------HHHHHHHHHHHHh-ccccc
Confidence 3667889999998 45544 3333 8999999999988 66665332 5789999999986 34555
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEE
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIV 282 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l 282 (526)
+... .-+.++|+|+.|.|..++.-..-...+-. ..-..+|+|++|+=
T Consensus 78 ldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 78 LDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRR-KVLRVLPNLKKLDN 124 (388)
T ss_pred HHHH-HHHhcCchhhhHhhccCCcccccchhHHH-HHHHHcccchhccC
Confidence 5332 33668999999999887654332221100 01145778887753
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.63 E-value=0.041 Score=50.42 Aligned_cols=62 Identities=23% Similarity=0.112 Sum_probs=30.6
Q ss_pred ccCCcceEEEeeccccccceec-cccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042 273 VFPNLEELIVDAEYIITNKFIF-SEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 273 ~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
.+|+|+++++++|.+.. +..+ |...+.+|..|++.+|.-..-..--...+.-+++|++|+-.
T Consensus 89 ~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hCCceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 34555555555544422 2222 22345566666666655432001123455667788777665
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.52 E-value=0.31 Score=40.30 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=3.7
Q ss_pred CCCCccEEEec
Q 039042 243 EFPSLKELWIS 253 (526)
Q Consensus 243 ~l~~L~~L~l~ 253 (526)
.+++|+.+.+.
T Consensus 33 ~~~~l~~i~~~ 43 (129)
T PF13306_consen 33 NCTSLKSINFP 43 (129)
T ss_dssp T-TT-SEEEES
T ss_pred ccccccccccc
Confidence 33344444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.04 E-value=0.56 Score=38.71 Aligned_cols=31 Identities=13% Similarity=0.017 Sum_probs=11.9
Q ss_pred cceEEEeccCceeeccccccccCcccEEEEe
Q 039042 353 IIRRVFRCYDLKYILKQESSIMNNLVILHVT 383 (526)
Q Consensus 353 ~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~ 383 (526)
+|+.+.+.+.+..+....+..+++++.+.+.
T Consensus 36 ~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 36 SLKSINFPNNLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-SEEEESSTTSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccceeeeeccccccccccc
Confidence 3333333333444444444444455555553
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.023 Score=49.95 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=50.7
Q ss_pred cccccCcccEEEEeccCCccccc--CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc
Q 039042 370 ESSIMNNLVILHVTNCHRLINLV--PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI 438 (526)
Q Consensus 370 ~~~~l~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 438 (526)
.+..+++++.|.+.+|..+.... .-.+..++|+.|+|++|+++++... ..+..+++|+.|.+.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhh
Confidence 34556888999999998876432 1123679999999999999998653 36678899999988875533
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.28 E-value=0.0048 Score=50.66 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=19.0
Q ss_pred CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042 155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV 203 (526)
Q Consensus 155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~ 203 (526)
-..|...+|++| .++.+ |..+.. .++.++.|++.++ .+..+|.+
T Consensus 52 ~~el~~i~ls~N-~fk~f-p~kft~--kf~t~t~lNl~~n-eisdvPeE 95 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKF-PKKFTI--KFPTATTLNLANN-EISDVPEE 95 (177)
T ss_pred CceEEEEecccc-hhhhC-CHHHhh--ccchhhhhhcchh-hhhhchHH
Confidence 344444555553 23332 333332 3444555555554 44444443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.07 E-value=0.17 Score=46.59 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=51.2
Q ss_pred cccccceEEEec-cCceee--ccccccccCcccEEEEeccCC--cccccCCCccCCCcCEEEEccCCCcccccc--hHHH
Q 039042 349 GMEVIIRRVFRC-YDLKYI--LKQESSIMNNLVILHVTNCHR--LINLVPSSTSFQNLTSLEISYCNGLKNVLT--FSIA 421 (526)
Q Consensus 349 ~~~~~L~~L~l~-~~l~~~--~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~ 421 (526)
..+|+|++|.++ +..... .+.....+++|+++++++++. ++++ .....+.+|..|++.+|+... +-. ...+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 566788888888 422211 112223458888888887753 2333 234566778888888885433 211 1245
Q ss_pred hhcccccEEEEcccc
Q 039042 422 KTLVRLREMKIESCA 436 (526)
Q Consensus 422 ~~l~~L~~L~i~~c~ 436 (526)
..+++|+.|+-..+.
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 566777777776654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.21 E-value=0.26 Score=24.76 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.5
Q ss_pred CccEEeEecCC
Q 039042 488 SLERLLVDDCT 498 (526)
Q Consensus 488 ~L~~L~l~~C~ 498 (526)
+|+.|++++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 44555555543
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=86.42 E-value=0.14 Score=42.42 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=32.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
++.+..|++.+|.+.++ |.+ +..++.|+.|+++.|+... .|..++ .|.+|-.|+..++
T Consensus 76 f~t~t~lNl~~neisdv----PeE-~Aam~aLr~lNl~~N~l~~--~p~vi~---~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDV----PEE-LAAMPALRSLNLRFNPLNA--EPRVIA---PLIKLDMLDSPEN 133 (177)
T ss_pred cchhhhhhcchhhhhhc----hHH-HhhhHHhhhcccccCcccc--chHHHH---HHHhHHHhcCCCC
Confidence 44566666666666555 444 4456666666666654333 344444 3555555555554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.17 E-value=0.66 Score=24.99 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=7.7
Q ss_pred ccEEeEecCCCccccCC
Q 039042 489 LERLLVDDCTNMKGFSR 505 (526)
Q Consensus 489 L~~L~l~~C~~l~~l~~ 505 (526)
|++|++++| +++.+|.
T Consensus 2 L~~Ldls~n-~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPS 17 (22)
T ss_dssp ESEEEETSS-EESEEGT
T ss_pred ccEEECCCC-cCEeCCh
Confidence 445555554 4444444
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.88 E-value=0.8 Score=25.84 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=11.7
Q ss_pred CCCccEEeEecCCCccc
Q 039042 486 FPSLERLLVDDCTNMKG 502 (526)
Q Consensus 486 ~~~L~~L~l~~C~~l~~ 502 (526)
+++|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36677777777776654
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.17 E-value=0.89 Score=42.22 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=40.7
Q ss_pred hhhhhhhcccccccc----cccccccccccccCCcccEEEeccCCCceecCCcccc-----cccccccccEEeeeccccc
Q 039042 127 LEKLEKLELRSINIE----RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTV-----SNNSFVRLQYIRIEKCHVL 197 (526)
Q Consensus 127 l~~L~~L~L~~~~l~----~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~-----~l~~l~~L~~L~l~~~~~l 197 (526)
-+.|++.....|++. +.|..... .-.+|+++.+..|. ++ |..+. .+..+.+|+.|++..| ..
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~----sh~~lk~vki~qNg-Ir---pegv~~L~~~gl~y~~~LevLDlqDN-tf 226 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLE----SHENLKEVKIQQNG-IR---PEGVTMLAFLGLFYSHSLEVLDLQDN-TF 226 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHH----hhcCceeEEeeecC-cC---cchhHHHHHHHHHHhCcceeeecccc-ch
Confidence 455666666666433 22222111 12466677766642 22 22111 0225667777777666 22
Q ss_pred cEEEeecchhhhcccccccccccceeecccC
Q 039042 198 EELIVVDNQEEERKNNIVMFPQLQYLKMYDL 228 (526)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 228 (526)
........ ...+..++.|++|.+.+|
T Consensus 227 t~~gS~~L-----a~al~~W~~lrEL~lnDC 252 (388)
T COG5238 227 TLEGSRYL-----ADALCEWNLLRELRLNDC 252 (388)
T ss_pred hhhhHHHH-----HHHhcccchhhhccccch
Confidence 22211111 111245666777777766
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.82 E-value=7.7 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=14.6
Q ss_pred CCcccEEEEecCCCCCCchhhh
Q 039042 75 SSQLKFLGIHGCRDALNPSAES 96 (526)
Q Consensus 75 l~~L~~L~L~~c~~~~~p~~~l 96 (526)
+++|++|+|++|.....|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3577888888876665565543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.82 E-value=7.7 Score=21.58 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=14.6
Q ss_pred CCcccEEEEecCCCCCCchhhh
Q 039042 75 SSQLKFLGIHGCRDALNPSAES 96 (526)
Q Consensus 75 l~~L~~L~L~~c~~~~~p~~~l 96 (526)
+++|++|+|++|.....|..++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3577888888876665565543
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=39.84 E-value=14 Score=34.65 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=57.2
Q ss_pred EEecceeehhHHHHHhccccccceeccccccccccc-ccccc--cccCCcccEEEEecCCCCCCchhhhhhccCcccccc
Q 039042 31 LRLNNKICLKDWLILQLQGIEDLELHELQEQDVNYF-ANELV--RVGSSQLKFLGIHGCRDALNPSAESKRQRQEESAND 107 (526)
Q Consensus 31 l~l~~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~-~~~~~--~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~ 107 (526)
+++.++-.. .++..-+.-+..+...+|+++.+..- ..|+. ..+-.+|+..+++.-.-...-..+..++.-|-.
T Consensus 11 lKl~T~eDv-k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~--- 86 (388)
T COG5238 11 LKLETKEDV-KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK--- 86 (388)
T ss_pred eeccccchh-hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH---
Confidence 344443332 23444444467777788888766443 23332 234466776666654322221111111111110
Q ss_pred cccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccC
Q 039042 108 MQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNC 166 (526)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c 166 (526)
....+++|+..+|++|-+..-....-.+.|+.-.+|++|.+.+|
T Consensus 87 ---------------aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 87 ---------------ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ---------------HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 11126778888888884332111100111557788899999886
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.56 E-value=23 Score=19.16 Aligned_cols=12 Identities=42% Similarity=0.398 Sum_probs=5.1
Q ss_pred CcccEEEeccCC
Q 039042 156 QNLTHLTLYNCM 167 (526)
Q Consensus 156 ~~L~~L~L~~c~ 167 (526)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 445555555543
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=35.70 E-value=28 Score=19.69 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=9.7
Q ss_pred ccccEEeeeccccccEE
Q 039042 184 VRLQYIRIEKCHVLEEL 200 (526)
Q Consensus 184 ~~L~~L~l~~~~~l~~l 200 (526)
.+|++|++++| .|+.+
T Consensus 2 ~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN-KIKKI 17 (26)
T ss_pred CccCEEECCCC-cccee
Confidence 46777777776 44443
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.86 E-value=23 Score=36.60 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=17.7
Q ss_pred cccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
+++.+..+.+++ +++..+....+.....|+|+.|+|+++
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccc
Confidence 445555555554 233332222122334566666666655
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=27.77 E-value=21 Score=20.41 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=7.8
Q ss_pred hhhhhcccccccc
Q 039042 129 KLEKLELRSINIE 141 (526)
Q Consensus 129 ~L~~L~L~~~~l~ 141 (526)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4666666666554
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.51 E-value=21 Score=36.89 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=7.3
Q ss_pred ccccccEEeeecc
Q 039042 182 SFVRLQYIRIEKC 194 (526)
Q Consensus 182 ~l~~L~~L~l~~~ 194 (526)
.-++|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 4455666666555
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=27.10 E-value=37 Score=19.24 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=11.6
Q ss_pred CCccEEeEecCCCccccCC
Q 039042 487 PSLERLLVDDCTNMKGFSR 505 (526)
Q Consensus 487 ~~L~~L~l~~C~~l~~l~~ 505 (526)
++|+.|.+++ .+|+++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 4567777765 45777665
Done!