Query 039042
Match_columns 526
No_of_seqs 213 out of 2949
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-29 3.6E-34 277.9 22.3 446 17-519 40-546 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-28 1E-32 266.3 25.0 360 46-443 173-556 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-27 5.7E-32 254.2 26.3 422 46-519 51-553 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.4E-27 4.8E-32 254.7 25.6 358 45-435 51-459 (606)
5 3t6q_A CD180 antigen; protein- 100.0 3E-27 1E-31 252.2 25.5 410 51-519 33-508 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 1.2E-26 4.2E-31 245.6 24.6 410 46-519 47-526 (570)
7 3vq2_A TLR4, TOLL-like recepto 99.9 4E-26 1.4E-30 243.5 24.7 390 45-498 74-556 (606)
8 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-25 4.7E-30 242.6 27.9 187 322-519 400-592 (680)
9 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-26 5.1E-31 243.8 19.7 191 299-519 309-505 (549)
10 4eco_A Uncharacterized protein 99.9 2.1E-26 7.3E-31 246.1 20.0 341 72-471 202-597 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 3.2E-26 1.1E-30 249.4 21.4 344 72-472 444-838 (876)
12 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-25 6.4E-30 241.6 27.4 433 46-519 44-568 (680)
13 2z63_A TOLL-like receptor 4, v 99.9 1.9E-25 6.6E-30 236.4 22.1 408 51-519 28-502 (570)
14 3j0a_A TOLL-like receptor 5; m 99.9 6.5E-25 2.2E-29 242.4 25.7 230 275-519 266-534 (844)
15 2z7x_B TOLL-like receptor 1, v 99.9 6.2E-25 2.1E-29 229.8 22.6 411 51-519 21-476 (520)
16 4eco_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 238.7 18.7 346 123-519 201-595 (636)
17 4ecn_A Leucine-rich repeat pro 99.9 1.2E-24 4E-29 237.2 20.3 347 123-519 443-835 (876)
18 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-24 7.8E-29 227.1 21.5 422 51-519 26-481 (549)
19 3j0a_A TOLL-like receptor 5; m 99.9 4E-23 1.4E-27 228.1 25.5 424 51-519 24-488 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.9E-23 1.3E-27 218.2 22.1 169 327-519 331-505 (562)
21 3v47_A TOLL-like receptor 5B a 99.9 7.3E-23 2.5E-27 210.4 22.1 354 76-498 30-406 (455)
22 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.9E-27 208.8 23.8 295 127-497 89-385 (466)
23 1o6v_A Internalin A; bacterial 99.9 4.9E-22 1.7E-26 204.7 24.6 341 71-519 41-383 (466)
24 2z7x_B TOLL-like receptor 1, v 99.9 2.7E-22 9.2E-27 209.8 20.7 381 79-519 3-452 (520)
25 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-21 5.7E-26 208.7 26.8 426 51-519 52-575 (635)
26 3o6n_A APL1; leucine-rich repe 99.9 4.4E-22 1.5E-26 200.3 18.4 304 127-497 44-349 (390)
27 3v47_A TOLL-like receptor 5B a 99.9 6.9E-22 2.4E-26 203.1 19.6 348 127-519 29-403 (455)
28 3o6n_A APL1; leucine-rich repe 99.9 8.2E-22 2.8E-26 198.3 19.0 306 74-472 43-350 (390)
29 2id5_A Lingo-1, leucine rich r 99.9 8.5E-21 2.9E-25 196.2 26.3 297 155-519 31-328 (477)
30 4fmz_A Internalin; leucine ric 99.9 1.8E-21 6.2E-26 192.6 19.8 301 126-498 42-344 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.5E-21 1.9E-25 201.7 24.4 384 54-519 34-481 (562)
32 2id5_A Lingo-1, leucine rich r 99.9 1E-21 3.5E-26 203.1 18.4 303 61-409 21-330 (477)
33 1jl5_A Outer protein YOPM; leu 99.9 3.3E-22 1.1E-26 204.6 14.1 351 43-502 26-410 (454)
34 3oja_B Anopheles plasmodium-re 99.9 1.8E-21 6.3E-26 206.6 18.7 105 349-472 251-356 (597)
35 4fmz_A Internalin; leucine ric 99.9 2.3E-21 7.8E-26 191.9 18.0 302 73-472 41-344 (347)
36 3oja_B Anopheles plasmodium-re 99.9 2.2E-21 7.5E-26 206.1 18.2 305 127-498 50-356 (597)
37 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-20 3.8E-25 202.3 23.1 413 45-497 70-577 (635)
38 3bz5_A Internalin-J, INLJ; leu 99.9 6E-21 2.1E-25 195.4 18.9 262 72-415 38-302 (457)
39 3bz5_A Internalin-J, INLJ; leu 99.8 7.2E-21 2.5E-25 194.8 16.1 290 127-503 63-354 (457)
40 3ogk_B Coronatine-insensitive 99.8 7.5E-22 2.6E-26 209.8 7.6 377 74-498 110-524 (592)
41 1jl5_A Outer protein YOPM; leu 99.8 1.1E-19 3.9E-24 185.8 22.0 373 50-521 10-406 (454)
42 2p1m_B Transport inhibitor res 99.8 3.3E-22 1.1E-26 212.6 -1.5 381 74-499 103-518 (594)
43 3ogk_B Coronatine-insensitive 99.8 3.2E-21 1.1E-25 205.0 5.8 412 42-496 103-547 (592)
44 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-19 7.7E-24 176.4 16.3 297 127-498 32-331 (332)
45 1xku_A Decorin; proteoglycan, 99.8 4.8E-18 1.6E-22 166.7 21.8 184 298-497 143-329 (330)
46 1xku_A Decorin; proteoglycan, 99.8 1.7E-18 5.9E-23 169.9 18.5 272 127-471 51-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 7.8E-19 2.7E-23 172.5 15.4 266 76-436 33-305 (332)
48 4fcg_A Uncharacterized protein 99.8 2.4E-18 8.1E-23 168.5 15.8 228 127-434 80-310 (328)
49 2p1m_B Transport inhibitor res 99.8 2.5E-20 8.6E-25 198.1 1.6 414 42-496 96-540 (594)
50 4fcg_A Uncharacterized protein 99.7 2.4E-17 8.3E-22 161.3 17.5 84 182-287 79-162 (328)
51 1ogq_A PGIP-2, polygalacturona 99.7 5.2E-18 1.8E-22 165.0 12.3 246 128-410 50-302 (313)
52 3o53_A Protein LRIM1, AGAP0063 99.7 4.1E-18 1.4E-22 166.2 9.7 243 154-439 32-276 (317)
53 2z80_A TOLL-like receptor 2, v 99.7 4.6E-17 1.6E-21 161.3 17.3 181 127-336 51-231 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.7E-21 168.9 19.1 254 76-436 40-295 (622)
55 3zyi_A Leucine-rich repeat-con 99.7 1.5E-16 5.2E-21 163.0 16.9 225 127-385 74-300 (452)
56 1ogq_A PGIP-2, polygalacturona 99.7 1.5E-16 5.2E-21 154.6 15.5 249 156-478 50-308 (313)
57 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-17 3.8E-22 163.1 7.4 263 53-390 12-277 (317)
58 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-19 1.2E-23 183.2 -3.8 171 127-311 55-238 (461)
59 3g06_A SSPH2 (leucine-rich rep 99.7 3.2E-16 1.1E-20 165.3 18.5 256 52-414 41-298 (622)
60 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 155.0 14.0 62 349-410 196-259 (306)
61 3zyj_A Leucine-rich repeat-con 99.7 4.2E-16 1.4E-20 159.1 18.2 242 130-409 45-289 (440)
62 3zyi_A Leucine-rich repeat-con 99.7 3.9E-16 1.3E-20 160.0 17.9 240 131-408 57-299 (452)
63 2z80_A TOLL-like receptor 2, v 99.7 5.2E-16 1.8E-20 153.6 17.9 172 183-385 30-208 (353)
64 3zyj_A Leucine-rich repeat-con 99.7 7.6E-16 2.6E-20 157.2 18.8 225 127-386 63-290 (440)
65 2z66_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 151.6 15.4 228 127-386 27-259 (306)
66 1ozn_A Reticulon 4 receptor; N 99.7 5.1E-16 1.7E-20 148.9 15.7 111 154-286 30-140 (285)
67 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.4E-23 177.8 -2.3 189 129-335 86-292 (461)
68 3oja_A Leucine-rich immune mol 99.6 7.2E-16 2.4E-20 159.1 13.1 237 127-434 33-271 (487)
69 1ozn_A Reticulon 4 receptor; N 99.6 8.2E-16 2.8E-20 147.4 12.6 222 159-436 14-236 (285)
70 2xwt_C Thyrotropin receptor; s 99.6 1.3E-14 4.3E-19 135.3 15.8 196 185-409 32-236 (239)
71 4ay9_X Follicle-stimulating ho 99.6 2.9E-14 9.9E-19 140.8 18.9 122 354-495 130-254 (350)
72 4ay9_X Follicle-stimulating ho 99.6 6.1E-14 2.1E-18 138.5 18.2 240 221-519 12-254 (350)
73 1wwl_A Monocyte differentiatio 99.6 9.3E-16 3.2E-20 149.0 4.8 227 128-409 63-306 (312)
74 3oja_A Leucine-rich immune mol 99.6 3.9E-15 1.3E-19 153.6 9.5 243 40-334 23-269 (487)
75 1wwl_A Monocyte differentiatio 99.6 2E-15 7E-20 146.6 6.7 152 275-436 149-307 (312)
76 2xwt_C Thyrotropin receptor; s 99.5 8.3E-14 2.8E-18 129.7 15.4 102 379-499 134-238 (239)
77 1p9a_G Platelet glycoprotein I 99.5 1.8E-13 6.1E-18 131.2 14.2 199 152-410 6-206 (290)
78 1p9a_G Platelet glycoprotein I 99.5 7.4E-14 2.5E-18 133.9 11.1 200 47-312 6-207 (290)
79 3rfs_A Internalin B, repeat mo 99.5 7.8E-14 2.7E-18 132.6 10.7 211 127-409 18-232 (272)
80 2o6q_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 127.4 15.4 106 156-287 16-121 (270)
81 2z62_A TOLL-like receptor 4, v 99.5 4.5E-13 1.5E-17 127.6 15.6 201 274-497 27-234 (276)
82 2z62_A TOLL-like receptor 4, v 99.5 4.9E-13 1.7E-17 127.3 15.3 32 376-408 201-233 (276)
83 2o6q_A Variable lymphocyte rec 99.5 4.8E-13 1.6E-17 126.9 15.0 198 245-472 16-216 (270)
84 1h6u_A Internalin H; cell adhe 99.4 6.6E-13 2.3E-17 128.5 13.6 143 154-335 39-181 (308)
85 2ast_B S-phase kinase-associat 99.4 1.8E-14 6.2E-19 141.4 1.4 175 128-335 70-255 (336)
86 2ast_B S-phase kinase-associat 99.4 7.2E-14 2.5E-18 137.1 5.3 103 130-259 49-156 (336)
87 3rfs_A Internalin B, repeat mo 99.4 2E-13 6.8E-18 129.7 7.4 201 182-445 39-242 (272)
88 1h6u_A Internalin H; cell adhe 99.4 1.2E-12 4E-17 126.8 12.1 145 127-311 84-228 (308)
89 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 121.4 11.5 176 53-287 16-191 (251)
90 4glp_A Monocyte differentiatio 99.3 2.3E-12 7.8E-17 124.9 8.2 91 154-255 89-179 (310)
91 2ca6_A RAN GTPase-activating p 99.3 4.9E-13 1.7E-17 133.9 1.5 98 152-255 28-132 (386)
92 4glp_A Monocyte differentiatio 99.3 7.5E-12 2.6E-16 121.2 9.1 152 350-519 143-302 (310)
93 2ca6_A RAN GTPase-activating p 99.3 4.7E-13 1.6E-17 134.1 0.6 249 44-335 25-311 (386)
94 3m19_A Variable lymphocyte rec 99.3 4.7E-11 1.6E-15 111.8 13.8 58 351-409 130-189 (251)
95 4ezg_A Putative uncharacterize 99.3 1.7E-11 5.6E-16 110.4 9.7 128 127-287 65-193 (197)
96 4ezg_A Putative uncharacterize 99.2 2.1E-11 7.3E-16 109.6 9.8 148 126-310 42-191 (197)
97 1h6t_A Internalin B; cell adhe 99.2 3.4E-11 1.2E-15 115.4 10.4 100 127-255 67-166 (291)
98 1h6t_A Internalin B; cell adhe 99.2 8.4E-11 2.9E-15 112.6 12.8 169 73-288 43-213 (291)
99 1m9s_A Internalin B; cell inva 99.2 8.9E-11 3E-15 123.6 12.3 124 127-287 86-209 (605)
100 1m9s_A Internalin B; cell inva 99.2 5.1E-11 1.7E-15 125.5 10.0 166 125-335 40-205 (605)
101 1dce_A Protein (RAB geranylger 99.1 2.3E-12 7.7E-17 134.9 -1.6 103 156-287 441-545 (567)
102 3goz_A Leucine-rich repeat-con 99.1 3.2E-12 1.1E-16 126.7 -1.2 38 372-409 250-294 (362)
103 3goz_A Leucine-rich repeat-con 99.1 4.2E-12 1.4E-16 125.9 -0.4 37 154-194 20-61 (362)
104 3e6j_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 106.3 9.5 16 76-91 40-55 (229)
105 2o6s_A Variable lymphocyte rec 99.1 9.4E-11 3.2E-15 106.3 7.6 108 127-255 51-158 (208)
106 2v9t_B SLIT homolog 2 protein 99.1 2.4E-10 8.1E-15 104.7 9.7 131 128-285 32-162 (220)
107 1xeu_A Internalin C; cellular 99.1 3.4E-10 1.2E-14 106.6 10.1 163 127-335 18-180 (263)
108 3cvr_A Invasion plasmid antige 99.1 6.4E-10 2.2E-14 115.9 12.2 113 156-311 59-171 (571)
109 1xeu_A Internalin C; cellular 99.1 3.3E-10 1.1E-14 106.7 9.1 166 51-287 19-184 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.0 6.6E-10 2.3E-14 101.7 10.5 133 128-286 32-164 (220)
111 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.7E-14 106.9 12.5 100 326-431 225-327 (329)
112 2xot_A Amphoterin-induced prot 99.0 4.8E-10 1.7E-14 110.9 9.8 137 127-287 38-175 (361)
113 3e6j_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 102.3 10.0 109 155-287 39-147 (229)
114 2v9t_B SLIT homolog 2 protein 99.0 9.1E-10 3.1E-14 100.7 10.8 150 131-311 14-163 (220)
115 3cvr_A Invasion plasmid antige 99.0 1.2E-09 4.3E-14 113.7 12.9 172 185-409 60-240 (571)
116 2o6s_A Variable lymphocyte rec 99.0 6E-10 2E-14 101.0 9.2 134 294-435 22-158 (208)
117 2xot_A Amphoterin-induced prot 99.0 1.5E-09 5.2E-14 107.3 11.6 169 131-335 21-197 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.0 2.2E-09 7.6E-14 98.1 10.8 108 323-434 53-162 (220)
119 3sb4_A Hypothetical leucine ri 98.9 5.1E-09 1.7E-13 102.1 11.3 292 127-468 24-328 (329)
120 1dce_A Protein (RAB geranylger 98.9 4.5E-11 1.5E-15 125.1 -3.7 123 185-333 442-566 (567)
121 2ell_A Acidic leucine-rich nuc 98.9 1.5E-09 5E-14 94.7 5.9 111 127-262 23-136 (168)
122 2ell_A Acidic leucine-rich nuc 98.8 1.9E-08 6.5E-13 87.6 11.6 138 351-506 23-165 (168)
123 4fdw_A Leucine rich hypothetic 98.8 1.6E-07 5.5E-12 93.8 18.8 123 301-434 249-379 (401)
124 2je0_A Acidic leucine-rich nuc 98.7 8E-09 2.7E-13 88.0 5.5 106 154-286 15-124 (149)
125 2je0_A Acidic leucine-rich nuc 98.7 4.5E-09 1.5E-13 89.6 3.9 127 127-283 16-148 (149)
126 4fs7_A Uncharacterized protein 98.7 3.5E-07 1.2E-11 91.4 18.3 144 349-516 250-393 (394)
127 2wfh_A SLIT homolog 2 protein 98.7 3E-08 1E-12 88.5 8.9 124 131-285 13-136 (193)
128 1w8a_A SLIT protein; signaling 98.7 3.3E-08 1.1E-12 88.2 8.5 125 131-285 11-136 (192)
129 4fdw_A Leucine rich hypothetic 98.7 6.6E-07 2.3E-11 89.3 18.8 261 154-470 111-379 (401)
130 2o6r_A Variable lymphocyte rec 98.7 4.5E-08 1.5E-12 86.0 8.8 128 130-287 9-136 (177)
131 1a9n_A U2A', U2A'; complex (nu 98.7 3E-08 1E-12 87.0 7.5 38 215-255 61-98 (176)
132 4fs7_A Uncharacterized protein 98.7 1.3E-06 4.5E-11 87.2 19.8 124 298-434 251-375 (394)
133 2wfh_A SLIT homolog 2 protein 98.7 4.5E-08 1.5E-12 87.4 8.1 108 127-256 30-137 (193)
134 1a9n_A U2A', U2A'; complex (nu 98.7 2.4E-08 8.1E-13 87.7 5.9 129 127-285 18-150 (176)
135 4b8c_D Glucose-repressible alc 98.6 6.2E-09 2.1E-13 112.3 1.7 109 152-287 220-328 (727)
136 1w8a_A SLIT protein; signaling 98.6 1.3E-07 4.4E-12 84.3 9.7 107 299-409 28-136 (192)
137 4b8c_D Glucose-repressible alc 98.6 4.6E-08 1.6E-12 105.5 6.5 112 126-263 222-333 (727)
138 1ds9_A Outer arm dynein; leuci 98.5 8.5E-09 2.9E-13 92.5 -2.4 34 127-166 47-80 (198)
139 2o6r_A Variable lymphocyte rec 98.4 7.4E-07 2.5E-11 78.1 9.9 110 294-409 22-134 (177)
140 1ds9_A Outer arm dynein; leuci 98.3 2.7E-08 9.3E-13 89.2 -2.0 78 350-434 46-124 (198)
141 3g39_A Variable lymphocyte rec 98.3 7.2E-07 2.4E-11 77.7 7.1 53 131-194 12-64 (170)
142 2r9u_A Variable lymphocyte rec 98.3 1E-06 3.5E-11 77.0 7.0 35 156-194 33-67 (174)
143 2r9u_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 76.5 6.7 60 127-194 56-115 (174)
144 3e4g_A ATP synthase subunit S, 98.2 6.5E-07 2.2E-11 77.3 4.5 64 376-439 62-128 (176)
145 3g39_A Variable lymphocyte rec 98.2 1.4E-06 4.9E-11 75.7 6.6 60 127-194 53-112 (170)
146 3e4g_A ATP synthase subunit S, 98.2 8.7E-07 3E-11 76.5 4.6 102 391-503 53-155 (176)
147 4gt6_A Cell surface protein; l 98.1 0.00051 1.7E-08 68.2 22.6 122 354-496 244-366 (394)
148 4gt6_A Cell surface protein; l 98.0 0.00032 1.1E-08 69.8 19.4 79 350-433 263-342 (394)
149 2ifg_A High affinity nerve gro 97.8 3.4E-05 1.2E-09 75.3 8.3 38 154-194 29-66 (347)
150 2ifg_A High affinity nerve gro 97.8 3.2E-05 1.1E-09 75.5 7.8 105 159-287 11-115 (347)
151 2ra8_A Uncharacterized protein 97.8 1.2E-05 3.9E-10 78.9 3.6 61 127-194 138-203 (362)
152 4h09_A Hypothetical leucine ri 97.7 0.0063 2.2E-07 59.8 22.9 62 127-201 45-106 (379)
153 2ra8_A Uncharacterized protein 97.7 1.5E-05 5.1E-10 78.1 3.6 39 374-414 278-321 (362)
154 3un9_A NLR family member X1; l 97.7 3.4E-06 1.1E-10 83.3 -1.5 37 398-435 210-249 (372)
155 3un9_A NLR family member X1; l 97.7 1.2E-06 4E-11 86.6 -4.8 173 127-311 71-250 (372)
156 4h09_A Hypothetical leucine ri 97.5 0.0052 1.8E-07 60.4 18.4 101 298-406 238-340 (379)
157 3rw6_A Nuclear RNA export fact 95.2 0.0064 2.2E-07 56.3 2.0 82 154-251 168-257 (267)
158 1io0_A Tropomodulin; LRR prote 94.9 0.0057 2E-07 53.4 0.7 118 371-498 32-162 (185)
159 3rw6_A Nuclear RNA export fact 94.6 0.023 7.8E-07 52.6 4.0 39 216-255 168-206 (267)
160 1io0_A Tropomodulin; LRR prote 94.1 0.018 6E-07 50.2 2.0 133 37-194 22-161 (185)
161 3rfe_A Platelet glycoprotein I 79.7 1.6 5.6E-05 35.0 4.0 35 156-194 31-65 (130)
162 3rfe_A Platelet glycoprotein I 77.1 2.9 0.0001 33.5 4.7 34 352-385 31-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 51.0 4 0.00014 35.4 0.6 39 128-166 70-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 41.4 6.5 0.00022 34.0 0.4 107 36-166 26-136 (197)
165 2lz0_A Uncharacterized protein 25.3 52 0.0018 24.6 3.1 35 350-384 18-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1e-29 Score=277.90 Aligned_cols=446 Identities=14% Similarity=0.015 Sum_probs=261.4
Q ss_pred cccccCCc-eeeeEEEEecceeeh--hHHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCC-c
Q 039042 17 WYWESTNI-WRREFRLRLNNKICL--KDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-P 92 (526)
Q Consensus 17 ~~~~~~~~-~~~~~~l~l~~~~~~--~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p 92 (526)
|.|.|..+ ++++..+++...... -..+...+..++.|++++++.+++...|. ....+++|++|+|++|..... |
T Consensus 40 C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~~~ 117 (768)
T 3rgz_A 40 CTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVT 117 (768)
T ss_dssp GGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEEGG
T ss_pred cCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCcCC
Confidence 78887544 467778888654211 11255677888888888888776655444 346788899999998876654 3
Q ss_pred h-hhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccc-----------------------
Q 039042 93 S-AESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRN----------------------- 146 (526)
Q Consensus 93 ~-~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~----------------------- 146 (526)
. ..++++++|++ ++++.....++... ...+++|++|++++|.++.....
T Consensus 118 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 192 (768)
T 3rgz_A 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSG-----GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192 (768)
T ss_dssp GGGGGGGCTTCCEEECCSSEEECCSSCCS-----CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES
T ss_pred ChHHHhCCCCCCEEECcCCccCCcCCHHH-----hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc
Confidence 3 24778888888 65554322222211 01144455555544433321100
Q ss_pred -ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeec
Q 039042 147 -QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKM 225 (526)
Q Consensus 147 -~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l 225 (526)
.+ +..+++|++|++++|.... ..|. ++ .+++|++|++++|.....++.. +..+++|++|++
T Consensus 193 ~~~---~~~l~~L~~L~Ls~n~l~~-~~~~-l~---~l~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~L 254 (768)
T 3rgz_A 193 DVD---VSRCVNLEFLDVSSNNFST-GIPF-LG---DCSALQHLDISGNKLSGDFSRA----------ISTCTELKLLNI 254 (768)
T ss_dssp CCB---CTTCTTCCEEECCSSCCCS-CCCB-CT---TCCSCCEEECCSSCCCSCHHHH----------TTTCSSCCEEEC
T ss_pred cCC---cccCCcCCEEECcCCcCCC-CCcc-cc---cCCCCCEEECcCCcCCCcccHH----------HhcCCCCCEEEC
Confidence 01 1255666666666654322 2233 22 5666666666666322222222 245666666666
Q ss_pred ccCccccccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccCCcceEEEeeccccccceecc--ccccccc
Q 039042 226 YDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKL 302 (526)
Q Consensus 226 ~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L 302 (526)
++|.-...++.. .+++|++|++++|. +. .+|..+. ..+++|++|++++|.+.. .+| ...+++|
T Consensus 255 s~n~l~~~~~~~-----~l~~L~~L~L~~n~-l~~~ip~~~~-----~~~~~L~~L~Ls~n~l~~---~~p~~~~~l~~L 320 (768)
T 3rgz_A 255 SSNQFVGPIPPL-----PLKSLQYLSLAENK-FTGEIPDFLS-----GACDTLTGLDLSGNHFYG---AVPPFFGSCSLL 320 (768)
T ss_dssp CSSCCEESCCCC-----CCTTCCEEECCSSE-EEESCCCCSC-----TTCTTCSEEECCSSEEEE---CCCGGGGGCTTC
T ss_pred CCCcccCccCcc-----ccCCCCEEECcCCc-cCCccCHHHH-----hhcCcCCEEECcCCcCCC---ccchHHhcCCCc
Confidence 654322222221 45666666666652 33 3333321 134667777776555431 122 2345666
Q ss_pred cEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCC------------------------CcCccccccceE
Q 039042 303 KCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKE------------------------KVENGMEVIIRR 356 (526)
Q Consensus 303 ~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~------------------------~~~~~~~~~L~~ 356 (526)
++|++++|.... .+|...+..+++|++|++. +. .+.+|.. .+....+++|++
T Consensus 321 ~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 321 ESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp CEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred cEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 666666665443 4555556666666666666 32 1122211 000012567777
Q ss_pred EEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042 357 VFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC 435 (526)
Q Consensus 357 L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 435 (526)
|++. +.+....+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.-....+ ..+..+++|++|++++|
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTLETLILDFN 476 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSS
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCceEEEecCC
Confidence 7777 66666666677778888888888876555666667777888888888774322333 45667788888888886
Q ss_pred cccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccce
Q 039042 436 AMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHK 515 (526)
Q Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~ 515 (526)
.....++.. +..+++|++|++++|.....+|.. +..+++|++|++++|.-...+|.....+++|++
T Consensus 477 ~l~~~~p~~------------l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 477 DLTGEIPSG------------LSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CCCSCCCGG------------GGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cccCcCCHH------------HhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 544344443 335788999999887644466654 667889999999988655577777777888999
Q ss_pred EEec
Q 039042 516 VQLN 519 (526)
Q Consensus 516 l~l~ 519 (526)
++++
T Consensus 543 L~Ls 546 (768)
T 3rgz_A 543 LDLN 546 (768)
T ss_dssp EECC
T ss_pred EECC
Confidence 8887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3e-28 Score=266.32 Aligned_cols=360 Identities=13% Similarity=0.013 Sum_probs=198.8
Q ss_pred hccccccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhccccccc
Q 039042 46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANIS 122 (526)
Q Consensus 46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~ 122 (526)
.+.++.+|+.++++++.+.... +...+++|++|++++|..... |. ++++++|++ +.++.....++..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~----- 242 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA----- 242 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCC---BCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHH-----
T ss_pred hhccCCCCCEEECCCCcccccC---CcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHH-----
Confidence 4677888888888876554322 335788888888888877665 44 778888888 6665433333322
Q ss_pred chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEe
Q 039042 123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIV 202 (526)
Q Consensus 123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~ 202 (526)
+..+++|++|++++|.++... |. ..+++|++|++++|.. +...|..+.. .+++|++|++++|.....++.
T Consensus 243 -l~~l~~L~~L~Ls~n~l~~~~---~~---~~l~~L~~L~L~~n~l-~~~ip~~~~~--~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 243 -ISTCTELKLLNISSNQFVGPI---PP---LPLKSLQYLSLAENKF-TGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp -TTTCSSCCEEECCSSCCEESC---CC---CCCTTCCEEECCSSEE-EESCCCCSCT--TCTTCSEEECCSSEEEECCCG
T ss_pred -HhcCCCCCEEECCCCcccCcc---Cc---cccCCCCEEECcCCcc-CCccCHHHHh--hcCcCCEEECcCCcCCCccch
Confidence 112556666666666444211 11 1345555555555432 2112333331 234555555554422112221
Q ss_pred ecchh-------------h-hcccc-cccccccceeecccCccccccccCcccccCCC-CccEEEeccCCCceecccccc
Q 039042 203 VDNQE-------------E-ERKNN-IVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFP-SLKELWISRCPEFMVRFKRTT 266 (526)
Q Consensus 203 ~~~~~-------------~-~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~ 266 (526)
.+... . ..+.. +..+++|++|+++++.-...+|.. +..++ +|++|++++|.--..++....
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 11000 0 00000 134555555555544222233333 33443 555555555522222222221
Q ss_pred CCccccccCCcceEEEeeccccccceecc--ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-ccccc
Q 039042 267 NDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLP 342 (526)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~ 342 (526)
. ..+++|+.|++++|.+.. .+| ...+++|++|++++|.... .+|. .+..+++|+.|++. +. .+.+|
T Consensus 390 ~----~~~~~L~~L~L~~n~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~-~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 390 Q----NPKNTLQELYLQNNGFTG---KIPPTLSNCSELVSLHLSFNYLSG--TIPS-SLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp C----STTCCCCEEECCSSEEEE---ECCGGGGGCTTCCEEECCSSEEES--CCCG-GGGGCTTCCEEECCSSCCCSCCC
T ss_pred h----cccCCccEEECCCCcccc---ccCHHHhcCCCCCEEECcCCcccC--cccH-HHhcCCCCCEEECCCCcccCcCC
Confidence 1 125567777776655431 222 2356677777777765433 3333 56677788888777 33 22333
Q ss_pred CCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHH
Q 039042 343 KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIA 421 (526)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 421 (526)
.. ...+++|++|++. +.+....+..+..+++|+.|++++|.....+|..+..+++|++|++++|.-...+| ..+
T Consensus 460 ~~---~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l 534 (768)
T 3rgz_A 460 QE---LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AEL 534 (768)
T ss_dssp GG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGG
T ss_pred HH---HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHH
Confidence 22 1566788888888 77776667777888888888888887666777777788888888888874333444 466
Q ss_pred hhcccccEEEEccccccceecc
Q 039042 422 KTLVRLREMKIESCAMITEIVL 443 (526)
Q Consensus 422 ~~l~~L~~L~i~~c~~l~~~~~ 443 (526)
..+++|+.|++++|.....+|.
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCG
T ss_pred cCCCCCCEEECCCCccCCcCCh
Confidence 7788888888888654444443
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.7e-27 Score=254.20 Aligned_cols=422 Identities=13% Similarity=0.050 Sum_probs=270.3
Q ss_pred hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042 46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN 123 (526)
Q Consensus 46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~ 123 (526)
.+.++.+|+.++++++.+..++.. ....+++|++|++++|.....++..++++++|++ +.++.. ..++. ..
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l-~~~~~-----~~ 123 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLES-----FP 123 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC-CCSSS-----SC
T ss_pred hccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc-ccccc-----cc
Confidence 567777888888887777666432 3356788888888888766664445778888888 555542 22221 11
Q ss_pred hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccccccc----EEeeeccccccE
Q 039042 124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ----YIRIEKCHVLEE 199 (526)
Q Consensus 124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~----~L~l~~~~~l~~ 199 (526)
++.+++|++|++++|.++.... |.. +..+++|++|++++|. ++.+.|..++ .+.+|+ +|++++| .+..
T Consensus 124 ~~~l~~L~~L~L~~n~l~~~~l--p~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~~l~~L~l~~n-~l~~ 195 (606)
T 3vq2_A 124 IGQLITLKKLNVAHNFIHSCKL--PAY-FSNLTNLVHVDLSYNY-IQTITVNDLQ---FLRENPQVNLSLDMSLN-PIDF 195 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCC--CGG-GGTCTTCCEEECCSSC-CCEECTTTTH---HHHHCTTCCCEEECTTC-CCCE
T ss_pred cCCCCCCCEEeCCCCcccceec--hHh-HhhcCCCCEEEccCCc-ceecChhhhh---hhhccccccceeeccCC-Ccce
Confidence 2347888888888887764211 333 6678888888888864 4444454443 222222 3444443 2222
Q ss_pred EEeecch-----------------------------------------------------------------------hh
Q 039042 200 LIVVDNQ-----------------------------------------------------------------------EE 208 (526)
Q Consensus 200 l~~~~~~-----------------------------------------------------------------------~~ 208 (526)
++..... ..
T Consensus 196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 2211100 00
Q ss_pred hcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc
Q 039042 209 ERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII 288 (526)
Q Consensus 209 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 288 (526)
...+.+..+++|++|+++++ .+..++ . +..+++|++|++++|. +..+| .. .+++|+.|+++++...
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~-~~~~l~-~---l~~~~~L~~L~l~~n~-l~~lp-~~-------~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGV-SIKYLE-D---VPKHFKWQSLSIIRCQ-LKQFP-TL-------DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESC-CCCCCC-C---CCTTCCCSEEEEESCC-CSSCC-CC-------CCSSCCEEEEESCSSC
T ss_pred ccccccccCCCCCEEEecCc-cchhhh-h---ccccccCCEEEccccc-Ccccc-cC-------CCCccceeeccCCcCc
Confidence 00011234556666666653 334444 2 5566777777777773 35554 21 4777888888766332
Q ss_pred ccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceee
Q 039042 289 TNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYI 366 (526)
Q Consensus 289 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~ 366 (526)
..++...+++|++|++++|.... .......+..+++|++|+++ +....++ ..+ ..+++|++|++. +.+...
T Consensus 342 ---~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 342 ---ISFKKVALPSLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp ---EECCCCCCTTCCEEECCSSCEEE-EEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEECTTSEEEST
T ss_pred ---cchhhccCCCCCEEECcCCccCC-CcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeECCCCccCCc
Confidence 23355577888888888875433 01013366788899999888 4443344 222 567899999998 777777
Q ss_pred cc-ccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccc
Q 039042 367 LK-QESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLAD 445 (526)
Q Consensus 367 ~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 445 (526)
.+ ..+..+++|+.|++++|......+..+..+++|++|++++| .+.....+..++.+++|++|++++|. +..++..
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~- 491 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG- 491 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChh-
Confidence 65 67788899999999998766666667788899999999987 45442112456788999999999875 4444322
Q ss_pred cCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCc-ccceEEec
Q 039042 446 DDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTP-VLHKVQLN 519 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~-~L~~l~l~ 519 (526)
.+..+++|++|+++++ .+..+.... +..+++|++|++++|. ++.+|.....++ +|++++++
T Consensus 492 ----------~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 492 ----------VFDTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp ----------TTTTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECC
T ss_pred ----------hhcccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEcc
Confidence 1335789999999986 455553332 6778999999999974 888888866676 59999988
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.4e-27 Score=254.75 Aligned_cols=358 Identities=11% Similarity=0.028 Sum_probs=173.2
Q ss_pred HhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccccccc
Q 039042 45 LQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANIS 122 (526)
Q Consensus 45 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~ 122 (526)
..+.++.+|+.++++++.+...... ....+++|++|++++|.....++..++++++|++ +.++. +..+...
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~----- 123 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFI----- 123 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGS-----
T ss_pred hHhccCccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcc-----
Confidence 3566677777777777666554321 3356777777777777665554444667777777 44443 2222111
Q ss_pred chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccccccc--EEeeeccccccEE
Q 039042 123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQ--YIRIEKCHVLEEL 200 (526)
Q Consensus 123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~--~L~l~~~~~l~~l 200 (526)
....+++|++|++++|.++.+.... +..+++|++|++++|. ++.+.|..++ .+++|+ +|++++| .+..+
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~l~L~l~~n-~l~~~ 194 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNA-IHYLSKEDMS---SLQQATNLSLNLNGN-DIAGI 194 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCT----TCCCTTCCEEECCSSC-CCEECHHHHH---TTTTCCSEEEECTTC-CCCEE
T ss_pred hhccCCcccEEECCCCcccccCccc----ccCCcccCEEEcccCc-ccccChhhhh---hhcccceeEEecCCC-ccCcc
Confidence 1123667777777777665431111 2246777777777653 3333344443 466666 5666665 33333
Q ss_pred Eeecchhh---------------------------------------hc-ccccccc--cccceeecccCccccccccCc
Q 039042 201 IVVDNQEE---------------------------------------ER-KNNIVMF--PQLQYLKMYDLEKLTSFCTGD 238 (526)
Q Consensus 201 ~~~~~~~~---------------------------------------~~-~~~~~~l--~~L~~L~l~~~~~l~~~~~~~ 238 (526)
+....... .. ......+ .+|++|+++++ .+..++...
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~ 273 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNT 273 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHH
Confidence 22111000 00 0000001 14455555543 333333322
Q ss_pred ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccccccc
Q 039042 239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILS 318 (526)
Q Consensus 239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (526)
+..+++|++|++++| .+..+|..+ ..+++|++|++++|.+.. +.......+++|++|++++|.... .+
T Consensus 274 --~~~l~~L~~L~l~~n-~l~~lp~~l------~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~--~~ 341 (606)
T 3t6q_A 274 --FHCFSGLQELDLTAT-HLSELPSGL------VGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRL--EL 341 (606)
T ss_dssp --TTTCTTCSEEECTTS-CCSCCCSSC------CSCTTCCEEECTTCCCSB-GGGGCGGGCTTCSEEECCSCSSCC--BC
T ss_pred --hccccCCCEEeccCC-ccCCCChhh------cccccCCEEECccCCcCc-CchhhhhccCcCCEEECCCCCccc--cc
Confidence 455666666666666 455555444 345666666666554421 111122345566666666654433 33
Q ss_pred chhHhhcCCCccEEEEe-ecccccc--CCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-
Q 039042 319 LDDFLQRFPTLKVLQIE-GYSDWLP--KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP- 393 (526)
Q Consensus 319 ~~~~l~~l~~L~~L~l~-~~~~~~~--~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~- 393 (526)
+...+..+++|++|+++ +...... ... ...+++|++|++. +.+..+.+..+..+++|+.|++++|......+.
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTT--TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred chhhhhccCcCCEEECCCCccccccCcchh--cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 44445556666666665 2211111 111 1344555555555 555555555555555555555555433222221
Q ss_pred CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042 394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC 435 (526)
Q Consensus 394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 435 (526)
.+..+++|++|++++| .+...+. ..+..+++|++|++++|
T Consensus 420 ~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGN 459 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTC
T ss_pred hhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCC
Confidence 1344455555555544 2222211 22334445555555443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3e-27 Score=252.23 Aligned_cols=410 Identities=15% Similarity=0.080 Sum_probs=276.2
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE 128 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~ 128 (526)
..++.++++++.+..++.. ....+++|++|++++|.....++..++++++|++ +.++......+.. +..++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~l~ 105 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA------LSGPK 105 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT------TSSCT
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh------hcccc
Confidence 3688999999888877532 4567899999999999876665556889999999 7666433222222 22389
Q ss_pred hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE 208 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 208 (526)
+|++|++++|.++.+-.. + +..+++|++|++++|.. +.+.+..+. .+++|++|++++| .+..++....
T Consensus 106 ~L~~L~L~~n~i~~l~~~-~---~~~l~~L~~L~L~~n~l-~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~~--- 173 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFI-P---LHNQKTLESLYLGSNHI-SSIKLPKGF---PTEKLKVLDFQNN-AIHYLSKEDM--- 173 (606)
T ss_dssp TCCEEECTTSCCSCGGGS-C---CTTCTTCCEEECCSSCC-CCCCCCTTC---CCTTCCEEECCSS-CCCEECHHHH---
T ss_pred cccEeeccccCcccCCcc-h---hccCCcccEEECCCCcc-cccCccccc---CCcccCEEEcccC-cccccChhhh---
Confidence 999999999987764111 2 55899999999999754 332222222 5899999999998 5555533211
Q ss_pred hcccccccccccc--eeecccCccccccccCcccccCCC-----------------------------------------
Q 039042 209 ERKNNIVMFPQLQ--YLKMYDLEKLTSFCTGDVHMLEFP----------------------------------------- 245 (526)
Q Consensus 209 ~~~~~~~~l~~L~--~L~l~~~~~l~~~~~~~~~~~~l~----------------------------------------- 245 (526)
+.+++|+ +|+++++ .+..++.. ....+
T Consensus 174 ------~~l~~L~~l~L~l~~n-~l~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 174 ------SSLQQATNLSLNLNGN-DIAGIEPG---AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp ------HTTTTCCSEEEECTTC-CCCEECTT---TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ------hhhcccceeEEecCCC-ccCccChh---HhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 3566666 5666653 33333322 11222
Q ss_pred -----------CccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccc--cccccccEEEeeeCCc
Q 039042 246 -----------SLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDE 312 (526)
Q Consensus 246 -----------~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 312 (526)
+|+.|+++++ .+..+++..+ ..+++|+.|+++++.+. .+|. ..+++|++|++++|..
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKH-YFFNISSNTF-----HCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTC-CCSSCCTTTT-----TTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCC
T ss_pred ChhHhchhhcCceeEEEeecC-ccCccCHHHh-----ccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCc
Confidence 4555666655 4444444432 36789999999977663 3443 3578999999998764
Q ss_pred ccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeec--cccccccCcccEEEEeccCC
Q 039042 313 LTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL--KQESSIMNNLVILHVTNCHR 387 (526)
Q Consensus 313 l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~--~~~~~~l~~L~~L~l~~c~~ 387 (526)
.. .+...+..+++|++|++. +. ...++...+ ..+++|++|++. +.+..+. +..+..+++|++|++++|..
T Consensus 314 ~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 314 EN---LCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp SB---GGGGCGGGCTTCSEEECCSCSSCCBCCSSTT--TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred Cc---CchhhhhccCcCCEEECCCCCcccccchhhh--hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 43 334467889999999998 43 334444433 678999999999 8888776 56788899999999999865
Q ss_pred cccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEe
Q 039042 388 LINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELK 467 (526)
Q Consensus 388 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 467 (526)
....+..+..+++|++|+++++ .+........+..+++|++|++++|......+.. +..+++|++|+
T Consensus 389 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l~~L~~L~ 455 (606)
T 3t6q_A 389 LSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL------------FDGLPALQHLN 455 (606)
T ss_dssp EEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT------------TTTCTTCCEEE
T ss_pred CcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHH------------HhCCCCCCEEE
Confidence 5555566778899999999987 4555443345678899999999997532222222 22467788888
Q ss_pred cCCCccccc--cCCCCccccCCCccEEeEecCCCcccc-CCCCCCCcccceEEec
Q 039042 468 LLNLKSLRS--FYSGNRALNFPSLERLLVDDCTNMKGF-SRGELSTPVLHKVQLN 519 (526)
Q Consensus 468 l~~~~~l~~--l~~~~~~~~~~~L~~L~l~~C~~l~~l-~~~~~~~~~L~~l~l~ 519 (526)
+++++ +.. ++....+..+++|++|++++|. ++.+ |.....+++|++|+++
T Consensus 456 L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 456 LQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp CTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECC
Confidence 87754 332 2222235567778888877763 4444 3444567777777776
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=245.65 Aligned_cols=410 Identities=13% Similarity=0.055 Sum_probs=257.6
Q ss_pred hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042 46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN 123 (526)
Q Consensus 46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~ 123 (526)
.+.++.+|+.++++++.+..++.. ....+++|++|++++|.....|...++++++|++ +.++ .+..++.. .
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-----~ 119 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENF-----P 119 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTC-----S
T ss_pred HhhCCCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCc-----c
Confidence 455666677777776666555432 2345677777777777654445445666777776 4443 22222221 1
Q ss_pred hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc----cEEeeeccccccE
Q 039042 124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL----QYIRIEKCHVLEE 199 (526)
Q Consensus 124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L----~~L~l~~~~~l~~ 199 (526)
++.+++|++|++++|.++.+- .|.+ +..+++|++|++++|. ++.+.|..+. .+++| ++|++++| .+..
T Consensus 120 ~~~l~~L~~L~L~~n~l~~~~--lp~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~---~l~~L~~~~~~L~l~~n-~l~~ 191 (570)
T 2z63_A 120 IGHLKTLKELNVAHNLIQSFK--LPEY-FSNLTNLEHLDLSSNK-IQSIYCTDLR---VLHQMPLLNLSLDLSLN-PMNF 191 (570)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CCGG-GGGCTTCCEEECTTSC-CCEECGGGGH---HHHTCTTCCCEEECTTC-CCCE
T ss_pred ccccccccEEecCCCccceec--Chhh-hcccCCCCEEeCcCCc-cceecHHHcc---chhccchhhhhcccCCC-Ccee
Confidence 223667777777777655321 1333 5567777777777653 3344344433 45555 56666665 3333
Q ss_pred EEeecchhhhcccccccccccceeecccC---------------------------------------------------
Q 039042 200 LIVVDNQEEERKNNIVMFPQLQYLKMYDL--------------------------------------------------- 228 (526)
Q Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--------------------------------------------------- 228 (526)
++... ....+|++|+++++
T Consensus 192 ~~~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 192 IQPGA----------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp ECTTT----------TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cCHHH----------hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 32211 11123444444332
Q ss_pred ------ccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccc
Q 039042 229 ------EKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKL 302 (526)
Q Consensus 229 ------~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 302 (526)
..+...... .+..+++|++|++++| .+..++..+ ..+ +|++|++++|.+. .+|...+++|
T Consensus 262 l~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~-~l~~l~~~~------~~~-~L~~L~l~~n~~~----~l~~~~l~~L 327 (570)
T 2z63_A 262 FRLAYLDYYLDDIID--LFNCLTNVSSFSLVSV-TIERVKDFS------YNF-GWQHLELVNCKFG----QFPTLKLKSL 327 (570)
T ss_dssp EEEEETTEEESCSTT--TTGGGTTCSEEEEESC-EECSCCBCC------SCC-CCSEEEEESCBCS----SCCBCBCSSC
T ss_pred hhhhcchhhhhhchh--hhcCcCcccEEEecCc-cchhhhhhh------ccC-CccEEeeccCccc----ccCccccccc
Confidence 111111111 1556788999999888 566666554 345 8999999977663 4666778899
Q ss_pred cEEEeeeCCcccccccchhHhhcCCCccEEEEe-ecccccc--CCCcCccccccceEEEec-cCceeeccccccccCccc
Q 039042 303 KCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLP--KEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLV 378 (526)
Q Consensus 303 ~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~--~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~ 378 (526)
++|+++++.... .++. ..+++|++|+++ +...... ... ...+++|++|++. +.+..+++. +..+++|+
T Consensus 328 ~~L~l~~n~~~~--~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~ 399 (570)
T 2z63_A 328 KRLTFTSNKGGN--AFSE---VDLPSLEFLDLSRNGLSFKGCCSQS--DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399 (570)
T ss_dssp CEEEEESCBSCC--BCCC---CBCTTCCEEECCSSCCBEEEEEEHH--HHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred CEEeCcCCcccc--cccc---ccCCCCCEEeCcCCccCcccccccc--ccccCccCEEECCCCcccccccc-ccccCCCC
Confidence 999998877554 3332 678999999998 4322111 111 1456899999999 888887665 78889999
Q ss_pred EEEEeccCCccccc-CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc-ceecccccCCcccccCCC
Q 039042 379 ILHVTNCHRLINLV-PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI-TEIVLADDDDDHDAAKDE 456 (526)
Q Consensus 379 ~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~~~~~~~~ 456 (526)
.|++++|......+ ..+..+++|++|++++|. +..... ..+..+++|++|++++|... ..++..
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~------------ 465 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI------------ 465 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSC------------
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhh------------
Confidence 99999875443333 246778999999999884 444332 45677899999999997633 234433
Q ss_pred eeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042 457 VIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN 519 (526)
Q Consensus 457 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~ 519 (526)
+..+++|++|++++| .++.++... +..+++|++|++++| +++.++.. ...+++|++++++
T Consensus 466 ~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 466 FTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred hhcccCCCEEECCCC-ccccCChhh-hhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec
Confidence 335789999999986 466654332 667899999999987 57777654 4568999999988
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4e-26 Score=243.55 Aligned_cols=390 Identities=14% Similarity=0.065 Sum_probs=275.4
Q ss_pred Hhccccccceeccccccccccc-ccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccch-hhhccccc
Q 039042 45 LQLQGIEDLELHELQEQDVNYF-ANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNE-LILEDNAN 120 (526)
Q Consensus 45 ~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~-~~~~~~~~ 120 (526)
..+.++.+|+.++++++.+... |. ....+++|++|++++|.....|...++++++|++ +.++.... .++.
T Consensus 74 ~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~---- 147 (606)
T 3vq2_A 74 KAWHGLHHLSNLILTGNPIQSFSPG--SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA---- 147 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCCCCTT--SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG----
T ss_pred HHhhchhhcCEeECCCCcccccChh--hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH----
Confidence 4577889999999999888777 44 4567999999999999987776445889999999 66664322 2222
Q ss_pred ccchhhhhhhhhhcccccccccccccccccccccCCccc----EEEeccCCCceecCCcccc------------------
Q 039042 121 ISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLT----HLTLYNCMNLRCLFSSCTV------------------ 178 (526)
Q Consensus 121 ~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~----~L~L~~c~~l~~l~p~~l~------------------ 178 (526)
.++.+++|++|++++|.++.+.... +..+++|+ +|++++|. ++.+.+..+.
T Consensus 148 --~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 148 --YFSNLTNLVHVDLSYNYIQTITVND----LQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNI 220 (606)
T ss_dssp --GGGTCTTCCEEECCSSCCCEECTTT----THHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHH
T ss_pred --hHhhcCCCCEEEccCCcceecChhh----hhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCccchhH
Confidence 2334899999999999777542211 22222222 44444432 2222111111
Q ss_pred -----------------------------------------------------------cccccccccEEeeeccccccE
Q 039042 179 -----------------------------------------------------------SNNSFVRLQYIRIEKCHVLEE 199 (526)
Q Consensus 179 -----------------------------------------------------------~l~~l~~L~~L~l~~~~~l~~ 199 (526)
.++.+++|++|+++++ .+..
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~ 299 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKY 299 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC-CCCC
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc-cchh
Confidence 0113344444444444 2333
Q ss_pred EEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcce
Q 039042 200 LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEE 279 (526)
Q Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~ 279 (526)
++ .+..+++|++|++++|.. ..+| . + .+++|++|++++|..+...+ + ..+++|+.
T Consensus 300 l~-----------~l~~~~~L~~L~l~~n~l-~~lp-~---~-~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~ 354 (606)
T 3vq2_A 300 LE-----------DVPKHFKWQSLSIIRCQL-KQFP-T---L-DLPFLKSLTLTMNKGSISFK--K------VALPSLSY 354 (606)
T ss_dssp CC-----------CCCTTCCCSEEEEESCCC-SSCC-C---C-CCSSCCEEEEESCSSCEECC--C------CCCTTCCE
T ss_pred hh-----------hccccccCCEEEcccccC-cccc-c---C-CCCccceeeccCCcCccchh--h------ccCCCCCE
Confidence 33 236788999999999754 7776 3 4 89999999999996665442 2 36899999
Q ss_pred EEEeeccccccce--eccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccce
Q 039042 280 LIVDAEYIITNKF--IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIR 355 (526)
Q Consensus 280 L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~ 355 (526)
|++++|.+.. .. ......+++|++|++++|... .++ ..+..+++|+.|++. +. ....+...+ ..+++|+
T Consensus 355 L~ls~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~---~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~ 427 (606)
T 3vq2_A 355 LDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI---IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLL 427 (606)
T ss_dssp EECCSSCEEE-EEECCHHHHCCSCCCEEECCSCSEE---EEC-CCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCC
T ss_pred EECcCCccCC-CcchhhhhccCCcccEeECCCCccc---cch-hhccCCCCCCeeECCCCccCCccChhhh--hccccCC
Confidence 9999886632 21 112246789999999998743 344 467789999999999 44 333332333 6789999
Q ss_pred EEEec-cCceeeccccccccCcccEEEEeccCCccc-ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEc
Q 039042 356 RVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN-LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIE 433 (526)
Q Consensus 356 ~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 433 (526)
+|+++ +.+....+..+..+++|++|++++|..... ++..+..+++|++|++++| +++..++ ..+..+++|++|+++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMS 505 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECC
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECC
Confidence 99999 888888888899999999999999965553 5667888999999999998 5666543 356789999999999
Q ss_pred ccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCC-CccEEeEecCC
Q 039042 434 SCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFP-SLERLLVDDCT 498 (526)
Q Consensus 434 ~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~-~L~~L~l~~C~ 498 (526)
+|. +..+ +.. +..+++|++|+++++ .++.+|.. +..++ +|++|++++++
T Consensus 506 ~N~-l~~~~~~~------------~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 506 HNN-LLFLDSSH------------YNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SSC-CSCEEGGG------------TTTCTTCCEEECTTS-CCCCEESC--GGGSCTTCCEEECCSCC
T ss_pred CCc-CCCcCHHH------------ccCCCcCCEEECCCC-cCcccCHh--HhhhcccCcEEEccCCC
Confidence 975 4444 433 235789999999986 58888876 66776 69999999865
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.4e-25 Score=242.64 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=93.7
Q ss_pred HhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCC--cccccCCCc
Q 039042 322 FLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR--LINLVPSST 396 (526)
Q Consensus 322 ~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~ 396 (526)
.+..+++|+.|+++ +. ...++...+ ..+++|++|++. +.+..+.+..+..+++|+.|+++++.. +...|..+.
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEW--RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGG--TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccc--cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 45566666666666 32 222332222 455666676666 666666666666666666666666542 234445556
Q ss_pred cCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccc
Q 039042 397 SFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRS 476 (526)
Q Consensus 397 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 476 (526)
.+++|+.|+++++ +++.++. ..+..+++|++|+++++. +..++....... ....+..+++|+.|+++++ .++.
T Consensus 478 ~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~N-~l~~ 550 (680)
T 1ziw_A 478 PLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHNN-LARLWKHANPGG---PIYFLKGLSHLHILNLESN-GFDE 550 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CGGGGSTTSTTS---CCCTTTTCTTCCEEECCSS-CCCC
T ss_pred cCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCCC-ccccchhhccCC---cchhhcCCCCCCEEECCCC-CCCC
Confidence 6677777777665 4555442 234566677777776643 333321100000 0001223455555555542 3444
Q ss_pred cCCCCccccCCCccEEeEecCCCccccCCCC-CCCcccceEEec
Q 039042 477 FYSGNRALNFPSLERLLVDDCTNMKGFSRGE-LSTPVLHKVQLN 519 (526)
Q Consensus 477 l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-~~~~~L~~l~l~ 519 (526)
+|... +..+++|++|++++ .+++.+|.+. ..+++|+.|+++
T Consensus 551 i~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 551 IPVEV-FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp CCTTT-TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCHHH-cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECC
Confidence 44432 34455555555544 2344444432 234444444444
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.5e-26 Score=243.83 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=143.5
Q ss_pred cccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeecc--ccccc
Q 039042 299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILK--QESSI 373 (526)
Q Consensus 299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~--~~~~~ 373 (526)
.++|+.|+++++. ++ .+|...++.+++|++|+++ +. .+.++........+++|++|+++ +.+..++. ..+..
T Consensus 309 ~~~L~~L~l~~n~-l~--~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 309 LEKVKRITVENSK-VF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp STTCCEEEEESSC-CC--CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred cccceEEEeccCc-cc--cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 3567888887765 44 5777777789999999999 44 33222111111567899999999 88887754 45778
Q ss_pred cCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCccccc
Q 039042 374 MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAA 453 (526)
Q Consensus 374 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 453 (526)
+++|+.|++++| .+..+|..+..+++|++|+++++ +++.++.. ..++|+.|++++|. +..++.
T Consensus 386 l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~----~~~~L~~L~Ls~N~-l~~~~~---------- 448 (549)
T 2z81_A 386 LKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC----IPQTLEVLDVSNNN-LDSFSL---------- 448 (549)
T ss_dssp CTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSCCCTT----SCTTCSEEECCSSC-CSCCCC----------
T ss_pred CCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Ccccccch----hcCCceEEECCCCC-hhhhcc----------
Confidence 999999999998 56678887888899999999998 56665521 12689999999864 554431
Q ss_pred CCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042 454 KDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN 519 (526)
Q Consensus 454 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~ 519 (526)
.+++|++|+++++ .++.+|.. ..+++|++|++++| +++.++.. ...+++|++++++
T Consensus 449 -----~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 449 -----FLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp -----CCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECC
T ss_pred -----cCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEec
Confidence 4789999999985 67888764 46899999999996 67777765 4678999999998
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.1e-26 Score=246.10 Aligned_cols=341 Identities=9% Similarity=0.024 Sum_probs=190.8
Q ss_pred cccCCcccEEEEecCCCCC------------------Cchhhhh--hccCccc--ccccccchhhhcccccccchhhhhh
Q 039042 72 RVGSSQLKFLGIHGCRDAL------------------NPSAESK--RQRQEES--ANDMQSNELILEDNANISNTLFLEK 129 (526)
Q Consensus 72 ~~~l~~L~~L~L~~c~~~~------------------~p~~~l~--~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~ 129 (526)
.+.+++|++|++++|.... .|.. ++ ++++|++ +.+|.....++.. ++.+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~ 274 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTF------LKALPE 274 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTT------TTTCSS
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHH------HhcCCC
Confidence 3467888888888888666 4443 44 6777777 6666555444432 223677
Q ss_pred hhhhcccccc-ccc--ccccccccccccC------CcccEEEeccCCCceecCCc--ccccccccccccEEeeecccccc
Q 039042 130 LEKLELRSIN-IER--IWRNQVAAMTCGI------QNLTHLTLYNCMNLRCLFSS--CTVSNNSFVRLQYIRIEKCHVLE 198 (526)
Q Consensus 130 L~~L~L~~~~-l~~--~~~~~~~~~~~~l------~~L~~L~L~~c~~l~~l~p~--~l~~l~~l~~L~~L~l~~~~~l~ 198 (526)
|++|++++|. ++. + |.+ ++.+ ++|++|++++|... .+ |. .+. .+++|++|++++| .+.
T Consensus 275 L~~L~Ls~n~~l~~~~l----p~~-~~~L~~~~~l~~L~~L~L~~n~l~-~i-p~~~~l~---~l~~L~~L~L~~N-~l~ 343 (636)
T 4eco_A 275 MQLINVACNRGISGEQL----KDD-WQALADAPVGEKIQIIYIGYNNLK-TF-PVETSLQ---KMKKLGMLECLYN-QLE 343 (636)
T ss_dssp CCEEECTTCTTSCHHHH----HHH-HHHHHHSGGGGTCCEEECCSSCCS-SC-CCHHHHT---TCTTCCEEECCSC-CCE
T ss_pred CCEEECcCCCCCccccc----hHH-HHhhhccccCCCCCEEECCCCcCC-cc-Cchhhhc---cCCCCCEEeCcCC-cCc
Confidence 7777777775 553 2 222 3333 77777777776433 33 54 444 6777777777777 333
Q ss_pred -EEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCC-ccEEEeccCCCceeccccccCCccccccCC
Q 039042 199 -ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPS-LKELWISRCPEFMVRFKRTTNDLTKKVFPN 276 (526)
Q Consensus 199 -~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~ 276 (526)
.++ .+ +.+++|++|+++++ .+..+|.. +..+++ |++|++++| .+..+|..+.. ..+++
T Consensus 344 g~ip-~~----------~~l~~L~~L~L~~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~l~~lp~~~~~----~~l~~ 403 (636)
T 4eco_A 344 GKLP-AF----------GSEIKLASLNLAYN-QITEIPAN---FCGFTEQVENLSFAHN-KLKYIPNIFDA----KSVSV 403 (636)
T ss_dssp EECC-CC----------EEEEEESEEECCSS-EEEECCTT---SEEECTTCCEEECCSS-CCSSCCSCCCT----TCSSC
T ss_pred cchh-hh----------CCCCCCCEEECCCC-ccccccHh---hhhhcccCcEEEccCC-cCcccchhhhh----cccCc
Confidence 555 32 46777777777764 45566555 666777 777777777 45556554322 23446
Q ss_pred cceEEEeeccccccc-eecc---cc--ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCc-
Q 039042 277 LEELIVDAEYIITNK-FIFS---ED--LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVEN- 348 (526)
Q Consensus 277 L~~L~l~~~~~~~~~-~~~~---~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~- 348 (526)
|+.|++++|.+.... ..++ .. .+++|++|++++|.. + .+|...+..+++|++|+++.+ ...+|...+..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~--~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-S--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-C--SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-C--cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 777777766553211 1111 00 334677777777543 3 356556666777777777733 33444333210
Q ss_pred ----cccccceEEEec-cCceeeccccc-cccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC-----C-ccccc
Q 039042 349 ----GMEVIIRRVFRC-YDLKYILKQES-SIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN-----G-LKNVL 416 (526)
Q Consensus 349 ----~~~~~L~~L~l~-~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~-l~~~~ 416 (526)
..+++|++|+++ +.+..++.... ..+++|+.|++++|.. ..+|..+..+++|+.|++++++ + ...+|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 112266666666 66665543322 2566666666666533 2355555566666666664321 1 12222
Q ss_pred chHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042 417 TFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNL 471 (526)
Q Consensus 417 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 471 (526)
..+..+++|++|++++|. +..+|.. .+++|+.|+++++
T Consensus 560 --~~l~~l~~L~~L~Ls~N~-l~~ip~~--------------~~~~L~~L~Ls~N 597 (636)
T 4eco_A 560 --EGITLCPSLTQLQIGSND-IRKVNEK--------------ITPNISVLDIKDN 597 (636)
T ss_dssp --TTGGGCSSCCEEECCSSC-CCBCCSC--------------CCTTCCEEECCSC
T ss_pred --HHHhcCCCCCEEECCCCc-CCccCHh--------------HhCcCCEEECcCC
Confidence 344456666666666643 3444432 1256666666654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.2e-26 Score=249.43 Aligned_cols=344 Identities=9% Similarity=0.001 Sum_probs=195.0
Q ss_pred cccCCcccEEEEecCCCCC------------------Cchhh-hhhccCccc--ccccccchhhhcccccccchhhhhhh
Q 039042 72 RVGSSQLKFLGIHGCRDAL------------------NPSAE-SKRQRQEES--ANDMQSNELILEDNANISNTLFLEKL 130 (526)
Q Consensus 72 ~~~l~~L~~L~L~~c~~~~------------------~p~~~-l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L 130 (526)
.+.+++|++|+|++|.... .|..+ +.++++|++ +.+|.....++.. +..+++|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~------l~~L~~L 517 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF------LYDLPEL 517 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG------GGGCSSC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH------HhCCCCC
Confidence 3567888888888888776 45442 237777777 6666555444432 2237777
Q ss_pred hhhcccccc-ccc--cccccccc------ccccCCcccEEEeccCCCceecCCc--ccccccccccccEEeeeccccccE
Q 039042 131 EKLELRSIN-IER--IWRNQVAA------MTCGIQNLTHLTLYNCMNLRCLFSS--CTVSNNSFVRLQYIRIEKCHVLEE 199 (526)
Q Consensus 131 ~~L~L~~~~-l~~--~~~~~~~~------~~~~l~~L~~L~L~~c~~l~~l~p~--~l~~l~~l~~L~~L~l~~~~~l~~ 199 (526)
+.|++++|. ++. + |.+ .+..+++|++|++++|... .+ |. .+. .+++|++|++++| .+..
T Consensus 518 ~~L~Ls~N~~lsg~~i----P~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~l~---~L~~L~~L~Ls~N-~l~~ 587 (876)
T 4ecn_A 518 QSLNIACNRGISAAQL----KADWTRLADDEDTGPKIQIFYMGYNNLE-EF-PASASLQ---KMVKLGLLDCVHN-KVRH 587 (876)
T ss_dssp CEEECTTCTTSCHHHH----HHHHHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHHHHT---TCTTCCEEECTTS-CCCB
T ss_pred CEEECcCCCCcccccc----hHHHHhhhhcccccCCccEEEeeCCcCC-cc-CChhhhh---cCCCCCEEECCCC-Cccc
Confidence 777777775 553 2 211 0123447777777776433 43 54 444 6777777777777 4445
Q ss_pred EEeecchhhhcccccccccccceeecccCccccccccCcccccCCCC-ccEEEeccCCCceeccccccCCccccccCCcc
Q 039042 200 LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPS-LKELWISRCPEFMVRFKRTTNDLTKKVFPNLE 278 (526)
Q Consensus 200 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~ 278 (526)
+| .+ +.+++|++|+++++ .+..+|.. +..+++ |++|++++| .+..+|..+.. ...++|+
T Consensus 588 lp-~~----------~~L~~L~~L~Ls~N-~l~~lp~~---l~~l~~~L~~L~Ls~N-~L~~lp~~~~~----~~~~~L~ 647 (876)
T 4ecn_A 588 LE-AF----------GTNVKLTDLKLDYN-QIEEIPED---FCAFTDQVEGLGFSHN-KLKYIPNIFNA----KSVYVMG 647 (876)
T ss_dssp CC-CC----------CTTSEESEEECCSS-CCSCCCTT---SCEECTTCCEEECCSS-CCCSCCSCCCT----TCSSCEE
T ss_pred ch-hh----------cCCCcceEEECcCC-ccccchHH---HhhccccCCEEECcCC-CCCcCchhhhc----cccCCCC
Confidence 55 22 56777777777764 34566555 666777 777777777 45556544322 2234477
Q ss_pred eEEEeeccccccceecccc----ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCc-----
Q 039042 279 ELIVDAEYIITNKFIFSED----LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVEN----- 348 (526)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~----- 348 (526)
.|++++|.+...+..++.. ..++|+.|++++|... .+|...+..+++|+.|+++ +....+|...+..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 7777776664322222211 2346777777776533 4666666677777777777 3333444333210
Q ss_pred cccccceEEEec-cCceeeccccc-cccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC-----Cc-ccccchHH
Q 039042 349 GMEVIIRRVFRC-YDLKYILKQES-SIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN-----GL-KNVLTFSI 420 (526)
Q Consensus 349 ~~~~~L~~L~l~-~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~l-~~~~~~~~ 420 (526)
..+++|++|+++ +.+..++.... ..+++|+.|++++|. +..+|..+..+++|+.|++++++ ++ ..+| ..
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~ 801 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP--TG 801 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC--TT
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccCh--HH
Confidence 123366666666 66665543222 256666666666653 33355555566666666665422 11 1222 34
Q ss_pred HhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042 421 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK 472 (526)
Q Consensus 421 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 472 (526)
+..+++|+.|++++|. +..+|.. .+++|+.|++++++
T Consensus 802 l~~L~~L~~L~Ls~N~-L~~Ip~~--------------l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND-IRKVDEK--------------LTPQLYILDIADNP 838 (876)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSC--------------CCSSSCEEECCSCT
T ss_pred HhcCCCCCEEECCCCC-CCccCHh--------------hcCCCCEEECCCCC
Confidence 4556666666666643 3545443 12566666666543
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.9e-25 Score=241.59 Aligned_cols=433 Identities=14% Similarity=0.081 Sum_probs=220.1
Q ss_pred hccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccc
Q 039042 46 QLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISN 123 (526)
Q Consensus 46 ~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~ 123 (526)
.+.++.+|+.++++++.+...+.. ....+++|++|++++|.....|...++++++|++ +.++. +..++.. .
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNN-----P 116 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSC-----T
T ss_pred HHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChh-----H
Confidence 456666777777776665554321 2345677777777777655556555667777777 44443 2222211 1
Q ss_pred hhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042 124 TLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV 203 (526)
Q Consensus 124 ~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~ 203 (526)
++.+++|++|++++|.++.... .. +..+++|++|++++|. ++.+.|..+. ...+++|++|++++| .+..++..
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~---~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~L~~n-~l~~~~~~ 189 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKL---GT-QVQLENLQELLLSNNK-IQALKSEELD-IFANSSLKKLELSSN-QIKEFSPG 189 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCC---CS-SSCCTTCCEEECCSSC-CCCBCHHHHG-GGTTCEESEEECTTC-CCCCBCTT
T ss_pred ccccCCCCEEECCCCcccccCc---hh-hcccccCCEEEccCCc-ccccCHHHhh-ccccccccEEECCCC-cccccChh
Confidence 2235666666666665543311 11 3356666666666653 2332232221 112355666666555 22222111
Q ss_pred cchh-----------------------------------------hhc-cccccccc--ccceeecccCccccccccCcc
Q 039042 204 DNQE-----------------------------------------EER-KNNIVMFP--QLQYLKMYDLEKLTSFCTGDV 239 (526)
Q Consensus 204 ~~~~-----------------------------------------~~~-~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~ 239 (526)
.... ... ...+..++ +|++|+++++ .+..++...
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~- 267 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDS- 267 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTT-
T ss_pred hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-CcCccCccc-
Confidence 0000 000 00012222 3666666654 334433221
Q ss_pred cccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc--------cceeccccccccccEEEeeeCC
Q 039042 240 HMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT--------NKFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 240 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~ 311 (526)
+..+++|++|++++| .+...++..+ ..+++|+.|+++++.... .+.......+++|++|++++|.
T Consensus 268 -~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 268 -FAWLPQLEYFFLEYN-NIQHLFSHSL-----HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp -TTTCTTCCEEECCSC-CBSEECTTTT-----TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred -ccCcccccEeeCCCC-ccCccChhhh-----cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 556677777777766 3444433222 256667776665432211 1111122356677777777765
Q ss_pred cccccccchhHhhcCCCccEEEEe-ec--cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCC
Q 039042 312 ELTTILSLDDFLQRFPTLKVLQIE-GY--SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR 387 (526)
Q Consensus 312 ~l~~~~~~~~~l~~l~~L~~L~l~-~~--~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~ 387 (526)
... ++...+..+++|++|+++ +. ...++...+.....++|+.|++. +.+..+.+..+..+++|+.|+++++..
T Consensus 341 l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 341 IPG---IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp BCC---CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCC---CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 332 344456677778877776 32 22222222211112455555555 555555555555555666666655543
Q ss_pred ccccc-CCCccCCCcCEEEEccCCCccccc-------------------------chHHHhhcccccEEEEcccccccee
Q 039042 388 LINLV-PSSTSFQNLTSLEISYCNGLKNVL-------------------------TFSIAKTLVRLREMKIESCAMITEI 441 (526)
Q Consensus 388 l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~-------------------------~~~~~~~l~~L~~L~i~~c~~l~~~ 441 (526)
...++ ..+..+++|++|++++|. +..++ .+..+..+++|+.|+++++. +..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i 495 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANI 495 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCC
T ss_pred ccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcC
Confidence 33232 123344444444444442 22211 11234556667777776643 4444
Q ss_pred cccccCCcccccCCCeeeeCccCeEecCCCccccccCCC-------CccccCCCccEEeEecCCCccccCCC-CCCCccc
Q 039042 442 VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSG-------NRALNFPSLERLLVDDCTNMKGFSRG-ELSTPVL 513 (526)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L 513 (526)
+.. .+..+++|++|+++++ .++.++.. ..+..+++|++|+++++ +++.+|.+ ...+++|
T Consensus 496 ~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 496 NDD-----------MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CTT-----------TTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred Chh-----------hhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCc
Confidence 332 2335678888888874 45554221 11456788999999885 57778765 4568899
Q ss_pred ceEEec
Q 039042 514 HKVQLN 519 (526)
Q Consensus 514 ~~l~l~ 519 (526)
++++++
T Consensus 563 ~~L~Ls 568 (680)
T 1ziw_A 563 KIIDLG 568 (680)
T ss_dssp CEEECC
T ss_pred ceeECC
Confidence 999887
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=236.40 Aligned_cols=408 Identities=12% Similarity=0.059 Sum_probs=277.5
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE 128 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~ 128 (526)
..++.++++++.+..++.. ....+++|++|++++|.....+...++++++|++ +.++. +..++. ..+..++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-----GAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECT-----TTTTTCT
T ss_pred ccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCH-----hhhcCcc
Confidence 4678889988888776543 4467899999999999766556667889999999 66554 333332 1223489
Q ss_pred hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE 208 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 208 (526)
+|++|++++|.++.+... + ++.+++|++|++++|.....-.|..++ .+++|++|++++| .+..++...
T Consensus 101 ~L~~L~L~~n~l~~l~~~-~---~~~l~~L~~L~L~~n~l~~~~lp~~~~---~l~~L~~L~l~~n-~l~~~~~~~---- 168 (570)
T 2z63_A 101 SLQKLVAVETNLASLENF-P---IGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSN-KIQSIYCTD---- 168 (570)
T ss_dssp TCCEEECTTSCCCCSTTC-S---CTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECTTS-CCCEECGGG----
T ss_pred ccccccccccccccCCCc-c---ccccccccEEecCCCccceecChhhhc---ccCCCCEEeCcCC-ccceecHHH----
Confidence 999999999987765221 1 558999999999997533211366655 7999999999998 565554322
Q ss_pred hccccccccccc----ceeecccCccccccccCcccccCCCCccEEEeccCCC---------------------------
Q 039042 209 ERKNNIVMFPQL----QYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPE--------------------------- 257 (526)
Q Consensus 209 ~~~~~~~~l~~L----~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~--------------------------- 257 (526)
+..+++| ++|+++++ .+..++.. .....+|++|+++++..
T Consensus 169 -----~~~l~~L~~~~~~L~l~~n-~l~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 169 -----LRVLHQMPLLNLSLDLSLN-PMNFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp -----GHHHHTCTTCCCEEECTTC-CCCEECTT---TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred -----ccchhccchhhhhcccCCC-CceecCHH---HhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 1456666 78888874 45555444 22333678887766511
Q ss_pred ---ceeccccccC-------------------C---ccccccCCcceEEEeeccccccceeccc--cccccccEEEeeeC
Q 039042 258 ---FMVRFKRTTN-------------------D---LTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFV 310 (526)
Q Consensus 258 ---l~~~~~~~~~-------------------~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~ 310 (526)
+..++..... + .....+++|+.|+++++.+. .+|. ..+ +|++|++++|
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~----~l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE----RVKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC----SCCBCCSCC-CCSEEEEESC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch----hhhhhhccC-CccEEeeccC
Confidence 0011000000 0 00134678888888866553 2332 234 8888888887
Q ss_pred CcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccccceEEEec-cCceeec--cccccccCcccEEEEecc
Q 039042 311 DELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL--KQESSIMNNLVILHVTNC 385 (526)
Q Consensus 311 ~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~--~~~~~~l~~L~~L~l~~c 385 (526)
... .+|. ..+++|++|.+. +. ...++. ..+++|++|++. +.+.... +..+..+++|++|++++|
T Consensus 315 ~~~---~l~~---~~l~~L~~L~l~~n~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 315 KFG---QFPT---LKLKSLKRLTFTSNKGGNAFSE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp BCS---SCCB---CBCSSCCEEEEESCBSCCBCCC-----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred ccc---ccCc---ccccccCEEeCcCCcccccccc-----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 643 3443 467888999888 33 222221 467899999999 7777664 456777899999999998
Q ss_pred CCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCe
Q 039042 386 HRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNE 465 (526)
Q Consensus 386 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 465 (526)
. +..++..+..+++|++|+++++ .+...+....+..+++|++|++++|......+.. +..+++|++
T Consensus 384 ~-l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~l~~L~~ 449 (570)
T 2z63_A 384 G-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI------------FNGLSSLEV 449 (570)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT------------TTTCTTCCE
T ss_pred c-cccccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhh------------hhcCCcCcE
Confidence 5 4444445778899999999987 4555543345678899999999997633333322 235799999
Q ss_pred EecCCCccc-cccCCCCccccCCCccEEeEecCCCcccc-CCCCCCCcccceEEec
Q 039042 466 LKLLNLKSL-RSFYSGNRALNFPSLERLLVDDCTNMKGF-SRGELSTPVLHKVQLN 519 (526)
Q Consensus 466 L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~C~~l~~l-~~~~~~~~~L~~l~l~ 519 (526)
|++++|... ..+|.. +..+++|++|++++|. ++.. |.....+++|++|+++
T Consensus 450 L~l~~n~l~~~~~p~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 450 LKMAGNSFQENFLPDI--FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp EECTTCEEGGGEECSC--CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC
T ss_pred EECcCCcCccccchhh--hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCC
Confidence 999997643 246644 6789999999999975 6565 6666778999999998
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=6.5e-25 Score=242.38 Aligned_cols=230 Identities=14% Similarity=0.112 Sum_probs=108.0
Q ss_pred CCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCcccccc
Q 039042 275 PNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVI 353 (526)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~ 353 (526)
++|+.|++++|.+.. +..-....+++|+.|++++|..-. ++...+..+++|++|+++ +.........+ ..+++
T Consensus 266 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~ 339 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINK---IADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPK 339 (844)
T ss_dssp SCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCE---ECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTT
T ss_pred CCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCC---CChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCC
Confidence 455555555444321 100111234555556655544322 222344555556666555 22222211221 34455
Q ss_pred ceEEEec-cCceeeccccccccCcccEEEEeccCC------------------cccccCCCccCCCcCEEEEccCCCccc
Q 039042 354 IRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHR------------------LINLVPSSTSFQNLTSLEISYCNGLKN 414 (526)
Q Consensus 354 L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~------------------l~~l~~~~~~~~~L~~L~l~~c~~l~~ 414 (526)
|++|++. +.+..+++..+..+++|+.|++++|.. +..+|. ...+++.|+++++ +++.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~---~~~~l~~L~ls~N-~l~~ 415 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSEN-RLEN 415 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCC---CCTTCCEEECCSC-CCCS
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccc---cccccceeecccC-cccc
Confidence 5555555 555555555555555555555555421 111211 1223333444332 3333
Q ss_pred ccchHHHhhcccccEEEEccccccceecccccC---------------Cc----ccccCCCeeeeCccCeEecCCCcccc
Q 039042 415 VLTFSIAKTLVRLREMKIESCAMITEIVLADDD---------------DD----HDAAKDEVIAFSELNELKLLNLKSLR 475 (526)
Q Consensus 415 ~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~---------------~~----~~~~~~~~~~~~~L~~L~l~~~~~l~ 475 (526)
++.......+++|+.|+++++. +...+..... .. .......+..+++|+.|+++++ .++
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 493 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLN 493 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHT
T ss_pred CchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-ccc
Confidence 3333344466667777666643 2221110000 00 0000012345577777777764 566
Q ss_pred ccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 476 SFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 476 ~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
.++... +..+++|+.|+++++ +++.+|..... ++|+.|+++
T Consensus 494 ~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~-~~L~~L~Ls 534 (844)
T 3j0a_A 494 SLPPGV-FSHLTALRGLSLNSN-RLTVLSHNDLP-ANLEILDIS 534 (844)
T ss_dssp TCCTTS-SSSCCSCSEEEEESC-CCSSCCCCCCC-SCCCEEEEE
T ss_pred ccChhH-ccchhhhheeECCCC-CCCccChhhhh-ccccEEECC
Confidence 666543 556788888888875 57777665543 667766665
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.2e-25 Score=229.84 Aligned_cols=411 Identities=12% Similarity=0.014 Sum_probs=232.3
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE 128 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~ 128 (526)
.+++.++++++.+...+.. ....+++|++|++++|.....++..++++++|++ ++++ .+..++.. .++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------PTV 90 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------CCC
T ss_pred ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--------ccC
Confidence 4566666666655554421 2345666666666666554443344566666666 4443 23333322 166
Q ss_pred hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc--cEEeeecccc--ccEEEeec
Q 039042 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL--QYIRIEKCHV--LEELIVVD 204 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L--~~L~l~~~~~--l~~l~~~~ 204 (526)
+|++|++++|.++.+.. |.. +..+++|++|++++|. ++. .. ++.+++| ++|++++|.. ....+..+
T Consensus 91 ~L~~L~L~~N~l~~~~~--p~~-~~~l~~L~~L~L~~n~-l~~---~~---~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPI--CKE-FGNMSQLKFLGLSTTH-LEK---SS---VLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CCSEEECCSSCCSSCCC--CGG-GGGCTTCCEEEEEESS-CCG---GG---GGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred CccEEeccCCccccccc--hhh-hccCCcceEEEecCcc-cch---hh---ccccccceeeEEEeecccccccccccccc
Confidence 66666666665553211 222 4466666666666654 221 11 1245555 6666666632 12221111
Q ss_pred chhh---------------hc-ccccccccccceeecccCc------cccccccCcccccCCCCccEEEeccCCCceecc
Q 039042 205 NQEE---------------ER-KNNIVMFPQLQYLKMYDLE------KLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF 262 (526)
Q Consensus 205 ~~~~---------------~~-~~~~~~l~~L~~L~l~~~~------~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 262 (526)
.... .. ...+..+++|+.|+++++. .+...... +..+++|+.|.++++ .+....
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---l~~l~~L~~L~l~~~-~l~~~~ 236 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK---LQTNPKLSNLTLNNI-ETTWNS 236 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG---GGGCTTCCEEEEEEE-EEEHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh---hccccchhhcccccc-ccCHHH
Confidence 0000 00 0001234555555555432 01111111 445566666666554 222110
Q ss_pred -ccccCCccccccCCcceEEEeeccccccceeccc-------cccccccEEEeeeCCcccccccchhHhhcC---CCccE
Q 039042 263 -KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE-------DLLCKLKCLDVEFVDELTTILSLDDFLQRF---PTLKV 331 (526)
Q Consensus 263 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l---~~L~~ 331 (526)
..... ....++|++|++++|.+.. .+|. ..+++|+.++++.+.. . +|...+..+ ++|+.
T Consensus 237 ~~~~~~---~~~~~~L~~L~l~~n~l~~---~~p~~~~~~~~~~l~~L~~l~l~~n~~-~---~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 237 FIRILQ---LVWHTTVWYFSISNVKLQG---QLDFRDFDYSGTSLKALSIHQVVSDVF-G---FPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp HHHHHH---HHHTSSCSEEEEEEEEEES---CCCCCCCCCCSCCCCEEEEEEEEECCC-C---SCTHHHHHHHHTCCCSE
T ss_pred HHHHHH---HhhhCcccEEEeecccccC---ccccchhhcccccCceeEeccccccce-e---cchhhhhcccccCceeE
Confidence 00000 0123477777777665531 2222 3466777777777654 2 342233333 56888
Q ss_pred EEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc--cccCCCccCCCcCEEEEc
Q 039042 332 LQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI--NLVPSSTSFQNLTSLEIS 407 (526)
Q Consensus 332 L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~ 407 (526)
|++. +.....+. ...+++|++|+++ +.+....+..+..+++|+.|++++|.... .++..+..+++|++|+++
T Consensus 307 L~l~~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 307 FTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEESSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEcCCCccccccc----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 8887 33211111 0456788999998 77777666777888899999998875432 444456678889999998
Q ss_pred cCCCccc-ccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccC
Q 039042 408 YCNGLKN-VLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNF 486 (526)
Q Consensus 408 ~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 486 (526)
++ .+.. ++. ..+..+++|++|++++|.....++.. ..++|+.|+++++ .++.+|.. +..+
T Consensus 383 ~N-~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------l~~~L~~L~Ls~N-~l~~ip~~--~~~l 443 (520)
T 2z7x_B 383 QN-SVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRC--------------LPPRIKVLDLHSN-KIKSIPKQ--VVKL 443 (520)
T ss_dssp SS-CCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGGS--------------CCTTCCEEECCSS-CCCCCCGG--GGGC
T ss_pred CC-cCCccccc-chhccCccCCEEECcCCCCCcchhhh--------------hcccCCEEECCCC-cccccchh--hhcC
Confidence 87 4554 542 23456788999999886533333321 1279999999985 67788876 4589
Q ss_pred CCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042 487 PSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN 519 (526)
Q Consensus 487 ~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~ 519 (526)
++|++|++++| +++.+|.. ...+++|++++++
T Consensus 444 ~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 444 EALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 99999999997 68888886 5678999999998
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.9e-25 Score=238.69 Aligned_cols=346 Identities=14% Similarity=0.120 Sum_probs=242.5
Q ss_pred chhhhhhhhhhcccccccccc-----ccc---------ccccccc--cCCcccEEEeccCCCceecCCcccccccccccc
Q 039042 123 NTLFLEKLEKLELRSINIERI-----WRN---------QVAAMTC--GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL 186 (526)
Q Consensus 123 ~~~~l~~L~~L~L~~~~l~~~-----~~~---------~~~~~~~--~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L 186 (526)
.++.+++|++|++++|.++.. |.. .|.+ ++ ++++|++|++++|.....+ |..++ .+++|
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~-p~~l~---~l~~L 275 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKL-PTFLK---ALPEM 275 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSC-CTTTT---TCSSC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccC-hHHHh---cCCCC
Confidence 355689999999999987761 110 2555 67 8999999999998755544 66655 79999
Q ss_pred cEEeeecccccc--EEEeecchhhhcccccccccccceeecccCcccccccc--CcccccCCCCccEEEeccCCCce-ec
Q 039042 187 QYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCT--GDVHMLEFPSLKELWISRCPEFM-VR 261 (526)
Q Consensus 187 ~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~-~~ 261 (526)
++|++++|..+. .+|..+.... ....+++|++|+++++ .+..+|. . ++.+++|++|++++| .+. .+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~----~~~~l~~L~~L~L~~n-~l~~ip~~~~---l~~l~~L~~L~L~~N-~l~g~i 346 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALA----DAPVGEKIQIIYIGYN-NLKTFPVETS---LQKMKKLGMLECLYN-QLEGKL 346 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHH----HSGGGGTCCEEECCSS-CCSSCCCHHH---HTTCTTCCEEECCSC-CCEEEC
T ss_pred CEEECcCCCCCccccchHHHHhhh----ccccCCCCCEEECCCC-cCCccCchhh---hccCCCCCEEeCcCC-cCccch
Confidence 999999995344 3444331100 0023489999999985 5667776 4 778999999999998 556 66
Q ss_pred cccccCCccccccCCcceEEEeeccccccceeccc--ccccc-ccEEEeeeCCcccccccchhHhhc--CCCccEEEEe-
Q 039042 262 FKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCK-LKCLDVEFVDELTTILSLDDFLQR--FPTLKVLQIE- 335 (526)
Q Consensus 262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-L~~L~l~~~~~l~~~~~~~~~l~~--l~~L~~L~l~- 335 (526)
| .+ ..+++|+.|++++|.+. .+|. ..+++ |++|++++|.. + .+|. .+.. +++|+.|+++
T Consensus 347 p-~~------~~l~~L~~L~L~~N~l~----~lp~~l~~l~~~L~~L~Ls~N~l-~--~lp~-~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 347 P-AF------GSEIKLASLNLAYNQIT----EIPANFCGFTEQVENLSFAHNKL-K--YIPN-IFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp C-CC------EEEEEESEEECCSSEEE----ECCTTSEEECTTCCEEECCSSCC-S--SCCS-CCCTTCSSCEEEEECCS
T ss_pred h-hh------CCCCCCCEEECCCCccc----cccHhhhhhcccCcEEEccCCcC-c--ccch-hhhhcccCccCEEECcC
Confidence 6 44 46889999999987663 3443 35667 99999998764 3 3554 2333 4489999998
Q ss_pred ec-cccccCCC----cCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc--------CCCc
Q 039042 336 GY-SDWLPKEK----VENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS--------FQNL 401 (526)
Q Consensus 336 ~~-~~~~~~~~----~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L 401 (526)
+. .+..|... .....+++|++|+++ +.+..++...+..+++|+.|++++|... .+|..... +++|
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc
Confidence 44 33222111 111245689999999 8888887776777899999999987543 66654332 2289
Q ss_pred CEEEEccCCCcccccchHHH--hhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC------Ccc
Q 039042 402 TSLEISYCNGLKNVLTFSIA--KTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN------LKS 473 (526)
Q Consensus 402 ~~L~l~~c~~l~~~~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~ 473 (526)
+.|+++++ +++.++ ..+ ..+++|+.|+++++. +..+|.. +..+++|+.|++++ +..
T Consensus 491 ~~L~Ls~N-~l~~lp--~~~~~~~l~~L~~L~Ls~N~-l~~ip~~------------~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 491 TSIDLRFN-KLTKLS--DDFRATTLPYLVGIDLSYNS-FSKFPTQ------------PLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp CEEECCSS-CCCBCC--GGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCSSCCEEECCSCBCTTCCBC
T ss_pred cEEECcCC-cCCccC--hhhhhccCCCcCEEECCCCC-CCCcChh------------hhcCCCCCEEECCCCcccccCcc
Confidence 99999987 577666 334 388999999999854 5556554 23578999999954 333
Q ss_pred ccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 474 LRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 474 l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
.+.+|.. +..+++|++|++++|. ++.+|.... ++|+.|+++
T Consensus 555 ~~~~p~~--l~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls 595 (636)
T 4eco_A 555 LREWPEG--ITLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIK 595 (636)
T ss_dssp CCCCCTT--GGGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECC
T ss_pred cccChHH--HhcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECc
Confidence 4556654 6778999999999865 588887644 789999888
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.2e-24 Score=237.21 Aligned_cols=347 Identities=14% Similarity=0.136 Sum_probs=243.9
Q ss_pred chhhhhhhhhhcccccccccc-----ccc---------ccccccc--cCCcccEEEeccCCCceecCCcccccccccccc
Q 039042 123 NTLFLEKLEKLELRSINIERI-----WRN---------QVAAMTC--GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL 186 (526)
Q Consensus 123 ~~~~l~~L~~L~L~~~~l~~~-----~~~---------~~~~~~~--~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L 186 (526)
.++.+++|++|+|++|.++.. |.. .|.+ ++ .+++|++|++++|.....+ |..+. .+++|
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~---~L~~L 517 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQL-PDFLY---DLPEL 517 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSC-CGGGG---GCSSC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccC-hHHHh---CCCCC
Confidence 455688999999999977761 110 2555 55 8999999999998755554 66655 79999
Q ss_pred cEEeeecccccc--EEEeecchhhhcccccccccccceeecccCcccccccc--CcccccCCCCccEEEeccCCCceecc
Q 039042 187 QYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCT--GDVHMLEFPSLKELWISRCPEFMVRF 262 (526)
Q Consensus 187 ~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~ 262 (526)
++|++++|..+. .+|..+..... ....+++|++|+++++ .+..+|. . +..+++|++|++++| .+..+|
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~---~~~~l~~L~~L~Ls~N-~L~~ip~~~~---l~~L~~L~~L~Ls~N-~l~~lp 589 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLAD---DEDTGPKIQIFYMGYN-NLEEFPASAS---LQKMVKLGLLDCVHN-KVRHLE 589 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHH---CTTTTTTCCEEECCSS-CCCBCCCHHH---HTTCTTCCEEECTTS-CCCBCC
T ss_pred CEEECcCCCCcccccchHHHHhhhh---cccccCCccEEEeeCC-cCCccCChhh---hhcCCCCCEEECCCC-Ccccch
Confidence 999999985343 34443311000 1135669999999985 5667776 4 778999999999998 566666
Q ss_pred ccccCCccccccCCcceEEEeeccccccceeccc--ccccc-ccEEEeeeCCcccccccchhHhhcC--CCccEEEEe-e
Q 039042 263 KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSE--DLLCK-LKCLDVEFVDELTTILSLDDFLQRF--PTLKVLQIE-G 336 (526)
Q Consensus 263 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-L~~L~l~~~~~l~~~~~~~~~l~~l--~~L~~L~l~-~ 336 (526)
.+ ..+++|+.|++++|.+. .+|. ..+++ |++|++++|.. + .+|. .+..+ ++|+.|+++ +
T Consensus 590 -~~------~~L~~L~~L~Ls~N~l~----~lp~~l~~l~~~L~~L~Ls~N~L-~--~lp~-~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 590 -AF------GTNVKLTDLKLDYNQIE----EIPEDFCAFTDQVEGLGFSHNKL-K--YIPN-IFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp -CC------CTTSEESEEECCSSCCS----CCCTTSCEECTTCCEEECCSSCC-C--SCCS-CCCTTCSSCEEEEECCSS
T ss_pred -hh------cCCCcceEEECcCCccc----cchHHHhhccccCCEEECcCCCC-C--cCch-hhhccccCCCCEEECcCC
Confidence 44 46899999999987664 3443 35667 99999998763 3 3553 33333 449999998 4
Q ss_pred c-cccccCC--CcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc--------CCCcCEE
Q 039042 337 Y-SDWLPKE--KVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS--------FQNLTSL 404 (526)
Q Consensus 337 ~-~~~~~~~--~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------~~~L~~L 404 (526)
. .+..|.- .+.....++|+.|+++ +.+..++...+..+++|+.|++++| .+..+|..... +++|+.|
T Consensus 655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEE
T ss_pred cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEE
Confidence 3 2222211 1111234689999999 8888887766677899999999988 44466654433 2389999
Q ss_pred EEccCCCcccccchHHHh--hcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC------Cccccc
Q 039042 405 EISYCNGLKNVLTFSIAK--TLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN------LKSLRS 476 (526)
Q Consensus 405 ~l~~c~~l~~~~~~~~~~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~ 476 (526)
++++| +++.++ ..+. .+++|+.|+++++. +..+|.. +..+++|+.|++++ +.....
T Consensus 734 ~Ls~N-~L~~lp--~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 734 DLRFN-KLTSLS--DDFRATTLPYLSNMDVSYNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp ECCSS-CCCCCC--GGGSTTTCTTCCEEECCSSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ECCCC-CCccch--HHhhhccCCCcCEEEeCCCC-CCccchh------------hhcCCCCCEEECCCCCCccccccccc
Confidence 99988 677766 3443 88999999999864 5556544 33679999999976 333455
Q ss_pred cCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 477 FYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 477 l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
+|.. +..+++|+.|++++|. +..+|.... ++|+.|+++
T Consensus 798 ip~~--l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 798 WPTG--ITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCTT--GGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECC
T ss_pred ChHH--HhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECC
Confidence 5654 6789999999999975 588888754 689999988
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.3e-24 Score=227.14 Aligned_cols=422 Identities=12% Similarity=0.056 Sum_probs=256.6
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE 128 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~ 128 (526)
+.++.++++++.+...+.. ....+++|++|++++|.....+...++++++|++ ++++.. ..++. ..++.++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~-----~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSS-----SWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CSCCH-----HHHTTCT
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc-CccCH-----HHhccCC
Confidence 5788888888877766432 3467889999999998766666566788888888 665542 22221 1123478
Q ss_pred hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecchh
Q 039042 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDNQE 207 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~ 207 (526)
+|++|++++|.++.+.. +.. +..+++|++|++++|..+..+++..+. .+++|++|++++|. +.. .+..
T Consensus 99 ~L~~L~Ls~n~l~~~~~--~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~---- 167 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGV--TSL-FPNLTNLQTLRIGNVETFSEIRRIDFA---GLTSLNELEIKALS-LRNYQSQS---- 167 (549)
T ss_dssp TCCEEECTTCCCSSSCS--SCS-CTTCTTCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEETT-CCEECTTT----
T ss_pred CCcEEECCCCcccccch--hhh-hhccCCccEEECCCCccccccCHhhhh---cccccCeeeccCCc-ccccChhh----
Confidence 89999999887764311 222 557888999999888766666444544 78889999998884 443 2222
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+..+++|++|+++.+. ...++... ...+++|++|++++| ++...+.... .+...+++|+.|+++++.+
T Consensus 168 ------l~~l~~L~~L~l~~n~-~~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 168 ------LKSIRDIHHLTLHLSE-SAFLLEIF--ADILSSVRYLELRDT-NLARFQFSPL--PVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp ------TTTCSEEEEEEEECSB-STTHHHHH--HHSTTTBSEEEEESC-BCTTCCCCCC--SSCCCCCCCCEEEEESCEE
T ss_pred ------hhccccCceEecccCc-ccccchhh--HhhcccccEEEccCC-cccccccccc--chhhhhhcccceecccccc
Confidence 2568888888888653 34443321 346888999999887 4444321000 0013577889998887655
Q ss_pred cccc-eecc--ccccccccEEEeeeCCccccccc---chhHhhcCCCccEEEEe-ec-cccccCCCcC--ccccccceEE
Q 039042 288 ITNK-FIFS--EDLLCKLKCLDVEFVDELTTILS---LDDFLQRFPTLKVLQIE-GY-SDWLPKEKVE--NGMEVIIRRV 357 (526)
Q Consensus 288 ~~~~-~~~~--~~~~~~L~~L~l~~~~~l~~~~~---~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~--~~~~~~L~~L 357 (526)
.... ..++ ...+++|+.+++++|.......+ ....+..+++|+.+.+. +. ........+. ....++|++|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 3211 1111 12467888888888754320001 11234556777887776 32 1110000000 0234577888
Q ss_pred Eec-cCceeeccccccccCcccEEEEeccCCccccc---CCCccCCCcCEEEEccCCCcccccc-hHHHhhcccccEEEE
Q 039042 358 FRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLV---PSSTSFQNLTSLEISYCNGLKNVLT-FSIAKTLVRLREMKI 432 (526)
Q Consensus 358 ~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i 432 (526)
++. +.+..++...+..+++|+.|++++|.....++ ..+..+++|+.|++++| +++.++. ...+..+++|++|++
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEEC
T ss_pred EeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEEC
Confidence 887 76776655544567788888888776544332 23556778888888776 5555542 134567788888888
Q ss_pred ccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCC----------------ccccCCCccEEeEec
Q 039042 433 ESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGN----------------RALNFPSLERLLVDD 496 (526)
Q Consensus 433 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----------------~~~~~~~L~~L~l~~ 496 (526)
++| .+..+|.... .+++|++|+++++. ++.++... ....+++|++|++++
T Consensus 395 s~N-~l~~lp~~~~------------~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 395 SRN-TFHPMPDSCQ------------WPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp TTC-CCCCCCSCCC------------CCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCC-CCccCChhhc------------ccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence 775 4555554321 33445555554432 22222110 012478899999988
Q ss_pred CCCccccCCCCCCCcccceEEec
Q 039042 497 CTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 497 C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
| +++.+|.. ..+++|++|+++
T Consensus 461 N-~l~~ip~~-~~l~~L~~L~Ls 481 (549)
T 2z81_A 461 N-KLKTLPDA-SLFPVLLVMKIS 481 (549)
T ss_dssp S-CCSSCCCG-GGCTTCCEEECC
T ss_pred C-ccCcCCCc-ccCccCCEEecC
Confidence 6 67788764 457889999887
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=4e-23 Score=228.14 Aligned_cols=424 Identities=12% Similarity=0.021 Sum_probs=260.2
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccchhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFL 127 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l 127 (526)
.+++.++++++.+...+.. ....+++|++|++++|..... ++..++++++|++ +.++......+..+ ..+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~------~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF------QGL 96 (844)
T ss_dssp TTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS------CSC
T ss_pred CCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc------cCC
Confidence 5678888888777765432 456788999999998865544 5556788888888 65554322223222 237
Q ss_pred hhhhhhccccccccccc-ccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 128 EKLEKLELRSINIERIW-RNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
++|++|++++|.++... .... +..+++|++|++++|......++..+. .+++|++|++++| .+..+....
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~---~~~L~~L~~L~Ls~N~l~~~~~~~~~~---~L~~L~~L~Ls~N-~i~~~~~~~-- 167 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGY---FRNLKALTRLDLSKNQIRSLYLHPSFG---KLNSLKSIDFSSN-QIFLVCEHE-- 167 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCC---CSSCSSCCEEEEESCCCCCCCCCGGGG---TCSSCCEEEEESS-CCCCCCSGG--
T ss_pred cccCEeeCcCCCCCcccccCcc---ccccCCCCEEECCCCcccccccchhHh---hCCCCCEEECCCC-cCCeeCHHH--
Confidence 88888888888776421 1111 447888888888887543321223333 7888888888887 343322211
Q ss_pred hhhcccccccc--cccceeecccCccccccccCcccccCCCC------ccEEEeccCCCceeccccccCCccccccCCcc
Q 039042 207 EEERKNNIVMF--PQLQYLKMYDLEKLTSFCTGDVHMLEFPS------LKELWISRCPEFMVRFKRTTNDLTKKVFPNLE 278 (526)
Q Consensus 207 ~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~l~~------L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~ 278 (526)
+..+ ++|++|+++++.-....+.. ++.+++ |++|++++|.--...+..+.. .....+++
T Consensus 168 -------l~~l~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---~l~~~~l~ 234 (844)
T 3j0a_A 168 -------LEPLQGKTLSFFSLAANSLYSRVSVD---WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN---AISKSQAF 234 (844)
T ss_dssp -------GHHHHHCSSCCCEECCSBSCCCCCCC---CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG---TSCSCCBS
T ss_pred -------cccccCCccceEECCCCccccccccc---hhhcCCccccCceeEEecCCCcCchhHHHHHHh---hcCccccc
Confidence 1233 77888888876433333333 334443 888888887321122221111 01235677
Q ss_pred eEEEeecccccc-----c-----eeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcC
Q 039042 279 ELIVDAEYIITN-----K-----FIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVE 347 (526)
Q Consensus 279 ~L~l~~~~~~~~-----~-----~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~ 347 (526)
.+.++.+.+... + ..+..-..++|+.|+++++.... ++...+..+++|+.|++. +.....+...+
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~- 310 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRVFETLKDLKVLNLAYNKINKIADEAF- 310 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE---ECSCCSSSCCCCCEEEEESCCCCEECTTTT-
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc---cChhhhhcCCCCCEEECCCCcCCCCChHHh-
Confidence 776652211110 0 11111124689999999876443 344467889999999999 44433333333
Q ss_pred ccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcc
Q 039042 348 NGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLV 425 (526)
Q Consensus 348 ~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 425 (526)
..+++|++|+++ +.+..+.+..+..+++|+.|+++++. +..++. .+..+++|+.|+++++ .++.++ .++
T Consensus 311 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~------~~~ 381 (844)
T 3j0a_A 311 -YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTTIH------FIP 381 (844)
T ss_dssp -TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC-CSCCCS------SCC
T ss_pred -cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCC-CCCccc------CCC
Confidence 677899999999 88888888889999999999999984 455443 4677899999999987 566554 268
Q ss_pred cccEEEEccccccceecccccCCcccccC-C---------CeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042 426 RLREMKIESCAMITEIVLADDDDDHDAAK-D---------EVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD 495 (526)
Q Consensus 426 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 495 (526)
+|+.|+++++. +..++.........+.. + .+..+++|+.|+++++ .+..++.......+++|+.|+++
T Consensus 382 ~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 382 SIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCC
Confidence 89999998853 55554321100000000 0 0124677888888774 45544443234456888888888
Q ss_pred cCCCccccC------CCCCCCcccceEEec
Q 039042 496 DCTNMKGFS------RGELSTPVLHKVQLN 519 (526)
Q Consensus 496 ~C~~l~~l~------~~~~~~~~L~~l~l~ 519 (526)
++. ++..+ .....+++|++|+++
T Consensus 460 ~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 460 ENM-LQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp SCC-CSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred CCc-cccccccccchhhhcCcccccEEECC
Confidence 753 43222 223456788888877
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=3.9e-23 Score=218.19 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc--cccCCCccCCCcC
Q 039042 327 PTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI--NLVPSSTSFQNLT 402 (526)
Q Consensus 327 ~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~ 402 (526)
.+|++|++. +.....+. ...+++|++|++. +.+....+..+..+++|+.|+++++..-. .++..+..+++|+
T Consensus 331 ~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVC----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCCSEEEEESSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred CcceEEEccCCCcccccC----ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 567788777 33211110 0456889999998 88887667778888999999999874322 3334567888999
Q ss_pred EEEEccCCCccc-ccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCC
Q 039042 403 SLEISYCNGLKN-VLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGN 481 (526)
Q Consensus 403 ~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 481 (526)
.|+++++ .++. ++. .....+++|++|+++++.-...++.. ..++|++|+++++ .++.+|..
T Consensus 407 ~L~l~~N-~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~--------------l~~~L~~L~L~~N-~l~~ip~~- 468 (562)
T 3a79_B 407 TLDVSLN-SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVFRC--------------LPPKVKVLDLHNN-RIMSIPKD- 468 (562)
T ss_dssp EEECTTS-CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGGSS--------------CCTTCSEEECCSS-CCCCCCTT-
T ss_pred EEECCCC-cCCCccCh-hhhcCcccCCEEECCCCCCCcchhhh--------------hcCcCCEEECCCC-cCcccChh-
Confidence 9999887 4555 442 24567789999999886532323221 1169999999985 78888876
Q ss_pred ccccCCCccEEeEecCCCccccCCC-CCCCcccceEEec
Q 039042 482 RALNFPSLERLLVDDCTNMKGFSRG-ELSTPVLHKVQLN 519 (526)
Q Consensus 482 ~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~~~L~~l~l~ 519 (526)
+..+++|++|+++++ +++.+|.. ...+++|+.++++
T Consensus 469 -~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 469 -VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp -TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred -hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence 448899999999985 68888887 5678999999988
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.3e-23 Score=210.41 Aligned_cols=354 Identities=13% Similarity=0.086 Sum_probs=205.9
Q ss_pred CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042 76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI 155 (526)
Q Consensus 76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l 155 (526)
++|++|++++|.....+...+++ +++|++|++++|.+..... +.. +..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~----------------------------l~~L~~L~L~~n~~~~~i~--~~~-~~~l 78 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR----------------------------LQDLQFLKVEQQTPGLVIR--NNT-FRGL 78 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS----------------------------CTTCCEEECCCCSTTCEEC--TTT-TTTC
T ss_pred CccCEEEecCCccCcCChhHhcc----------------------------CccccEEECcCCcccceEC--ccc-cccc
Confidence 67888888887654443322333 5566666666664431110 111 4456
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecchhhhcccccccccccceeecccCcccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF 234 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 234 (526)
++|++|++++|. ++.+.|..+. .+++|++|++++|. +.. ++.. ..+..+++|++|+++++ .+..+
T Consensus 79 ~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~ 144 (455)
T 3v47_A 79 SSLIILKLDYNQ-FLQLETGAFN---GLANLEVLTLTQCN-LDGAVLSG--------NFFKPLTSLEMLVLRDN-NIKKI 144 (455)
T ss_dssp TTCCEEECTTCT-TCEECTTTTT---TCTTCCEEECTTSC-CBTHHHHS--------STTTTCTTCCEEECCSS-BCCSC
T ss_pred ccCCEEeCCCCc-cCccChhhcc---CcccCCEEeCCCCC-CCccccCc--------ccccCcccCCEEECCCC-ccCcc
Confidence 667777776654 3333354444 56677777776663 221 1111 00145666777777664 33443
Q ss_pred ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--------ccccccccEEE
Q 039042 235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--------EDLLCKLKCLD 306 (526)
Q Consensus 235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~L~ 306 (526)
... ..+..+++|++|++++| .+....+.... .....+|+.|+++++.+.. +.... ...+++|++|+
T Consensus 145 ~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~---~l~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 145 QPA-SFFLNMRRFHVLDLTFN-KVKSICEEDLL---NFQGKHFTLLRLSSITLQD-MNEYWLGWEKCGNPFKNTSITTLD 218 (455)
T ss_dssp CCC-GGGGGCTTCCEEECTTC-CBSCCCTTTSG---GGTTCEEEEEECTTCBCTT-CSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred Ccc-cccCCCCcccEEeCCCC-cccccChhhhh---ccccccccccccccCcccc-cchhhccccccccccccceeeeEe
Confidence 221 11446677777777766 34433332211 0112566666666554421 11110 01235677777
Q ss_pred eeeCCcccccccchhHhh--cCCCccEEEEe-ec--cccccC--------CCcCccccccceEEEec-cCceeecccccc
Q 039042 307 VEFVDELTTILSLDDFLQ--RFPTLKVLQIE-GY--SDWLPK--------EKVENGMEVIIRRVFRC-YDLKYILKQESS 372 (526)
Q Consensus 307 l~~~~~l~~~~~~~~~l~--~l~~L~~L~l~-~~--~~~~~~--------~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~ 372 (526)
+++|.... ..+..... ..++|+.|.+. +. ...+.. ..+.....++|++|++. +.+..+.+..+.
T Consensus 219 Ls~n~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 219 LSGNGFKE--SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp CTTSCCCH--HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred cCCCcccc--cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 77765433 33332222 23677777776 32 111110 11111233689999998 888888888888
Q ss_pred ccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccc
Q 039042 373 IMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDA 452 (526)
Q Consensus 373 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 452 (526)
.+++|+.|++++|......+..+..+++|++|+++++ .+...+. ..+..+++|++|+++++. +..++..
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~-------- 365 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQ-------- 365 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSC-CCEECTT--------
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCc-ccccChh--------
Confidence 8899999999988654444556778889999999887 5666542 356778999999998864 5544321
Q ss_pred cCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042 453 AKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 453 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
.+..+++|++|++++ +.++.++... +..+++|++|++++++
T Consensus 366 ---~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 366 ---SFLGLPNLKELALDT-NQLKSVPDGI-FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ---TTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ---hccccccccEEECCC-CccccCCHhH-hccCCcccEEEccCCC
Confidence 133578999999988 4677777653 5678999999998865
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=208.75 Aligned_cols=295 Identities=17% Similarity=0.215 Sum_probs=157.0
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.... +..+++|++|++++|. ++.+ |. + +.+++|++|++++| .+..++.
T Consensus 89 l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~-l~~~-~~-~---~~l~~L~~L~l~~n-~l~~~~~---- 151 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQ-ITDI-DP-L---KNLTNLNRLELSSN-TISDISA---- 151 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCC-GG-G---TTCTTCSEEEEEEE-EECCCGG----
T ss_pred cccCCEEECCCCccccChh------hcCCCCCCEEECCCCC-CCCC-hH-H---cCCCCCCEEECCCC-ccCCChh----
Confidence 5666666666665554311 3356666666666653 3333 21 2 25666666666666 3333221
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|++.+ .+..++ .+..+++|++|++++| .+..++. + ..+++|++|++++|.
T Consensus 152 -------~~~l~~L~~L~l~~--~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 152 -------LSGLTSLQQLSFGN--QVTDLK----PLANLTTLERLDISSN-KVSDISV-L------AKLTNLESLIATNNQ 210 (466)
T ss_dssp -------GTTCTTCSEEEEEE--SCCCCG----GGTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCSEEECCSSC
T ss_pred -------hccCCcccEeecCC--cccCch----hhccCCCCCEEECcCC-cCCCChh-h------ccCCCCCEEEecCCc
Confidence 14566666666642 222221 1445666666666666 3443322 1 356666666666554
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+.. ..+.+.+++|++|++++|.... + ..+..+++|+.|+++ +.....+. ...+++|++|++. +.+.
T Consensus 211 l~~---~~~~~~l~~L~~L~l~~n~l~~---~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 211 ISD---ITPLGILTNLDELSLNGNQLKD---I--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp CCC---CGGGGGCTTCCEEECCSSCCCC---C--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCC
T ss_pred ccc---cccccccCCCCEEECCCCCccc---c--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccC
Confidence 421 1223445666666666654322 2 245566666666666 33211111 1445666777766 5555
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 444 (526)
.+++ +..+++|+.|++++|. +..+++ +..+++|+.|++++| ++...+. ...+++|+.|++++|. +..++.
T Consensus 279 ~~~~--~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~- 348 (466)
T 1o6v_A 279 NISP--LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVSS- 348 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCGG-
T ss_pred cccc--ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCchh-
Confidence 5543 5556677777776663 333322 456667777777666 4444431 4566777777776653 433321
Q ss_pred ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042 445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC 497 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 497 (526)
+..+++|+.|++++|. +..++. +..+++|+.|++++|
T Consensus 349 ------------l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 349 ------------LANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp ------------GTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCE
T ss_pred ------------hccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCC
Confidence 2245677777776653 333322 345677777777665
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.9e-22 Score=204.74 Aligned_cols=341 Identities=13% Similarity=0.132 Sum_probs=253.2
Q ss_pred ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042 71 VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA 150 (526)
Q Consensus 71 ~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~ 150 (526)
....++++++|++.+|.....|. +. .+++|++|++++|.++.+..
T Consensus 41 ~~~~l~~l~~L~l~~~~i~~l~~--~~----------------------------~l~~L~~L~Ls~n~l~~~~~----- 85 (466)
T 1o6v_A 41 SQTDLDQVTTLQADRLGIKSIDG--VE----------------------------YLNNLTQINFSNNQLTDITP----- 85 (466)
T ss_dssp CHHHHHTCCEEECCSSCCCCCTT--GG----------------------------GCTTCCEEECCSSCCCCCGG-----
T ss_pred ChhHhccccEEecCCCCCccCcc--hh----------------------------hhcCCCEEECCCCccCCchh-----
Confidence 33457899999999887544332 11 27889999999998876522
Q ss_pred ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcc
Q 039042 151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEK 230 (526)
Q Consensus 151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 230 (526)
+..+++|++|++++|. ++.+.| ++ .+++|++|++++| .+..++. +..+++|++|+++++ .
T Consensus 86 -~~~l~~L~~L~l~~n~-l~~~~~--~~---~l~~L~~L~L~~n-~l~~~~~-----------~~~l~~L~~L~l~~n-~ 145 (466)
T 1o6v_A 86 -LKNLTKLVDILMNNNQ-IADITP--LA---NLTNLTGLTLFNN-QITDIDP-----------LKNLTNLNRLELSSN-T 145 (466)
T ss_dssp -GTTCTTCCEEECCSSC-CCCCGG--GT---TCTTCCEEECCSS-CCCCCGG-----------GTTCTTCSEEEEEEE-E
T ss_pred -hhccccCCEEECCCCc-cccChh--hc---CCCCCCEEECCCC-CCCCChH-----------HcCCCCCCEEECCCC-c
Confidence 4589999999999975 444433 33 8999999999998 5655533 268999999999986 4
Q ss_pred ccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeC
Q 039042 231 LTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFV 310 (526)
Q Consensus 231 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (526)
+..++ . +..+++|++|.+.+ .+...++ + ..+++|+.|++++|.+.. +. ....+++|++|++++|
T Consensus 146 l~~~~-~---~~~l~~L~~L~l~~--~~~~~~~-~------~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 146 ISDIS-A---LSGLTSLQQLSFGN--QVTDLKP-L------ANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNN 209 (466)
T ss_dssp ECCCG-G---GTTCTTCSEEEEEE--SCCCCGG-G------TTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSS
T ss_pred cCCCh-h---hccCCcccEeecCC--cccCchh-h------ccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCC
Confidence 56553 2 66899999999974 3444433 2 478999999999887632 21 2346789999999998
Q ss_pred CcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCc
Q 039042 311 DELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRL 388 (526)
Q Consensus 311 ~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l 388 (526)
.... .. .++.+++|+.|++. +....++ . ...+++|++|++. +.+..+.+ +..+++|+.|++++|. +
T Consensus 210 ~l~~--~~---~~~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l 277 (466)
T 1o6v_A 210 QISD--IT---PLGILTNLDELSLNGNQLKDIG--T--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-I 277 (466)
T ss_dssp CCCC--CG---GGGGCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-C
T ss_pred cccc--cc---cccccCCCCEEECCCCCcccch--h--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCc-c
Confidence 6543 22 26779999999999 4432222 1 2567999999999 88877754 7788999999999984 4
Q ss_pred ccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEec
Q 039042 389 INLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKL 468 (526)
Q Consensus 389 ~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 468 (526)
..+++ +..+++|+.|++++| +++.++ .+..+++|+.|++++|. +..++. +..+++|++|++
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l 338 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNEN-QLEDIS---PISNLKNLTYLTLYFNN-ISDISP-------------VSSLTKLQRLFF 338 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSS-CCSCCG---GGGGCTTCSEEECCSSC-CSCCGG-------------GGGCTTCCEEEC
T ss_pred Ccccc-ccCCCccCeEEcCCC-cccCch---hhcCCCCCCEEECcCCc-CCCchh-------------hccCccCCEeEC
Confidence 44444 678899999999998 577665 26788999999999975 444432 125799999999
Q ss_pred CCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 469 LNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
++| .++.++. +..+++|+.|++++|. +...+. ...+++|+.++++
T Consensus 339 ~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 339 YNN-KVSDVSS---LANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp CSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECC
T ss_pred CCC-ccCCchh---hccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEecc
Confidence 986 5666642 6689999999999985 555444 5568999999987
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=209.83 Aligned_cols=381 Identities=13% Similarity=0.068 Sum_probs=219.4
Q ss_pred cEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCC
Q 039042 79 KFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQ 156 (526)
Q Consensus 79 ~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~ 156 (526)
++|++++|.....|..+. ++|++ ++++.. ..++. ..+..+++|++|++++|.++.+. |.. +..++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i-~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~---~~~-~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYI-SELWT-----SDILSLSKLRILIISHNRIQYLD---ISV-FKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCC-CCCCH-----HHHTTCTTCCEEECCSSCCCEEE---GGG-GTTCT
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcc-cccCh-----hhccccccccEEecCCCccCCcC---hHH-hhccc
Confidence 578888887665566432 55555 444432 22211 11223677777777777666441 112 45677
Q ss_pred cccEEEeccCCCceecCCcccccccccccccEEeeeccccccE--EEeecchhhhcccccccccccceeecccCcccccc
Q 039042 157 NLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE--LIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF 234 (526)
Q Consensus 157 ~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 234 (526)
+|++|++++|. ++.+ |.. .+++|++|++++| .+.. +|..+ +.+++|++|+++++ .+...
T Consensus 70 ~L~~L~Ls~N~-l~~l-p~~-----~l~~L~~L~L~~N-~l~~~~~p~~~----------~~l~~L~~L~L~~n-~l~~~ 130 (520)
T 2z7x_B 70 ELEYLDLSHNK-LVKI-SCH-----PTVNLKHLDLSFN-AFDALPICKEF----------GNMSQLKFLGLSTT-HLEKS 130 (520)
T ss_dssp TCCEEECCSSC-CCEE-ECC-----CCCCCSEEECCSS-CCSSCCCCGGG----------GGCTTCCEEEEEES-SCCGG
T ss_pred CCCEEecCCCc-eeec-Ccc-----ccCCccEEeccCC-ccccccchhhh----------ccCCcceEEEecCc-ccchh
Confidence 77777777763 4444 332 4677777777777 3433 22222 56777777777764 33331
Q ss_pred ccCcccccCCCCc--cEEEeccCCC--ceeccccccC--------------------CccccccCCcceEEEeecc----
Q 039042 235 CTGDVHMLEFPSL--KELWISRCPE--FMVRFKRTTN--------------------DLTKKVFPNLEELIVDAEY---- 286 (526)
Q Consensus 235 ~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~--------------------~~~~~~l~~L~~L~l~~~~---- 286 (526)
. +..+++| ++|++++|.. ....+..+.. ......+++|+.+++++|.
T Consensus 131 --~---~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 131 --S---VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp --G---GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred --h---ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 1 4456666 7777777632 1112211100 0000124455555555432
Q ss_pred ---ccccceeccccccccccEEEeeeCCcccccccchhHh--hcCCCccEEEEe-ec-cccccCCCcCc--cccccceEE
Q 039042 287 ---IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFL--QRFPTLKVLQIE-GY-SDWLPKEKVEN--GMEVIIRRV 357 (526)
Q Consensus 287 ---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l--~~l~~L~~L~l~-~~-~~~~~~~~~~~--~~~~~L~~L 357 (526)
+...+. ....+++|+.|+++++.... ..+.... ...++|++|++. +. .+.+|...+.. ..+++|+.+
T Consensus 206 ~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 206 CSYFLSILA--KLQTNPKLSNLTLNNIETTW--NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp THHHHHHHH--GGGGCTTCCEEEEEEEEEEH--HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred cceeecchh--hhccccchhhccccccccCH--HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 111111 11234566666665543222 1111111 124578888887 44 33444332111 344555555
Q ss_pred Eec-cCceeeccc------------------------c-ccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCC
Q 039042 358 FRC-YDLKYILKQ------------------------E-SSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNG 411 (526)
Q Consensus 358 ~l~-~~l~~~~~~------------------------~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~ 411 (526)
++. +.+ .++.. . ...+++|++|++++|......+..+..+++|+.|+++++ +
T Consensus 282 ~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~ 359 (520)
T 2z7x_B 282 QVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-Q 359 (520)
T ss_dssp EEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-C
T ss_pred cccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-c
Confidence 555 333 22210 1 156789999999998766656777888999999999987 5
Q ss_pred cccccc-hHHHhhcccccEEEEccccccce-ecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCc
Q 039042 412 LKNVLT-FSIAKTLVRLREMKIESCAMITE-IVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSL 489 (526)
Q Consensus 412 l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L 489 (526)
++.++. +..+..+++|++|+++++. +.. ++.. .+..+++|++|+++++.--..++.. + .++|
T Consensus 360 l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L 423 (520)
T 2z7x_B 360 LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-----------DCSWTKSLLSLNMSSNILTDTIFRC--L--PPRI 423 (520)
T ss_dssp CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-----------SCCCCTTCCEEECCSSCCCGGGGGS--C--CTTC
T ss_pred cCccccchHHHhhCCCCCEEECCCCc-CCcccccc-----------hhccCccCCEEECcCCCCCcchhhh--h--cccC
Confidence 665431 2457789999999999965 444 5543 1235789999999987543444443 1 2799
Q ss_pred cEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 490 ERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 490 ~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
+.|++++| +++.+|.....+++|++|+++
T Consensus 424 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 424 KVLDLHSN-KIKSIPKQVVKLEALQELNVA 452 (520)
T ss_dssp CEEECCSS-CCCCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCC-cccccchhhhcCCCCCEEECC
Confidence 99999997 688998877789999999998
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.7e-21 Score=208.70 Aligned_cols=426 Identities=12% Similarity=0.005 Sum_probs=223.3
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLE 128 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~ 128 (526)
.+++.++|+++.++.++.. ...++++|++|+|++|.....|...+.++++|++ ++++. ++.++.. .+..++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~-----~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG-----AFSGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGG-----GGTTCT
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH-----HhcCCC
Confidence 3677788887777777643 3456788888888887665556666777888888 55543 4444321 112377
Q ss_pred hhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhh
Q 039042 129 KLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEE 208 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 208 (526)
+|++|++++|.++.+ +...++.+++|++|++++|.....-.|..++ .+++|++|++++| .+..++......-
T Consensus 125 ~L~~L~Ls~N~l~~l----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~l~~L 196 (635)
T 4g8a_A 125 SLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSN-KIQSIYCTDLRVL 196 (635)
T ss_dssp TCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGG---GCTTCCEEECCSS-CCCEECGGGGHHH
T ss_pred CCCEEECCCCcCCCC----ChhhhhcCcccCeeccccCccccCCCchhhc---cchhhhhhcccCc-cccccccccccch
Confidence 788888888876654 2111457788888888876432211244433 6777888888776 4444332111000
Q ss_pred ------------------hcccccccccccceeecccCc------------------------------ccccc------
Q 039042 209 ------------------ERKNNIVMFPQLQYLKMYDLE------------------------------KLTSF------ 234 (526)
Q Consensus 209 ------------------~~~~~~~~l~~L~~L~l~~~~------------------------------~l~~~------ 234 (526)
...+.......++.+++.+.. .+...
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 000000001111112111100 00000
Q ss_pred -------------------ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc------
Q 039042 235 -------------------CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT------ 289 (526)
Q Consensus 235 -------------------~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------ 289 (526)
.........+++++.+.+.++. +..+... ....+|+.|++.++.+..
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l 348 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDF-------SYNFGWQHLELVNCKFGQFPTLKL 348 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGG-------GSCCCCSEEEEESCEESSCCCCBC
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-ccccccc-------ccchhhhhhhcccccccCcCcccc
Confidence 0000002233455555555442 2222111 123344444444332210
Q ss_pred ------------cceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceE
Q 039042 290 ------------NKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRR 356 (526)
Q Consensus 290 ------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~ 356 (526)
.........+++|+.++++.+.... ..........+.+|+.+++. +.....+.. ...+++|+.
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~---~~~l~~L~~ 424 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNGVITMSSN---FLGLEQLEH 424 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCSEEEECSC---CTTCTTCCE
T ss_pred hhhhhcccccccCCCCcccccccccccchhhcccccc-ccccccchhhhhhhhhhhcccccccccccc---ccccccccc
Confidence 0011122245667777776654332 01112234456667777666 221111111 144567777
Q ss_pred EEec-cCceee-ccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 357 VFRC-YDLKYI-LKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 357 L~l~-~~l~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
+.+. .+.... ....+..+.+++.++++.+......+.....+++|+.|+++++.......+ ..+..+++|++|++++
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTT
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCC
Confidence 7776 333332 234556677777777777654444444556677888888877644443322 3456677888888887
Q ss_pred ccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCC-CCCC-cc
Q 039042 435 CAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRG-ELST-PV 512 (526)
Q Consensus 435 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~-~~~~-~~ 512 (526)
| .+..++.. .+..+++|++|+++++ +++.++... +..+++|+.|+++++ +++.++.. ...+ ++
T Consensus 504 N-~L~~l~~~-----------~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~ 568 (635)
T 4g8a_A 504 C-QLEQLSPT-----------AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS 568 (635)
T ss_dssp S-CCCEECTT-----------TTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCEEECTTS-CCCBCCSSCTTCCCTT
T ss_pred C-ccCCcChH-----------HHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCEEECCCC-cCCCCCHHHHHhhhCc
Confidence 5 35555432 1235678888888774 577766553 566788888888874 46665544 3334 57
Q ss_pred cceEEec
Q 039042 513 LHKVQLN 519 (526)
Q Consensus 513 L~~l~l~ 519 (526)
|+.|+++
T Consensus 569 L~~L~L~ 575 (635)
T 4g8a_A 569 LAFLNLT 575 (635)
T ss_dssp CCEEECT
T ss_pred CCEEEee
Confidence 8888876
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4.4e-22 Score=200.35 Aligned_cols=304 Identities=14% Similarity=0.078 Sum_probs=187.4
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
++++++|+++++.++.+ |.+.+..+++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++...
T Consensus 44 l~~l~~l~l~~~~l~~l----~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~-- 112 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKL----PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA---YAHTIQKLYMGFN-AIRYLPPHV-- 112 (390)
T ss_dssp GCCCSEEEEESCEESEE----CTHHHHHCCCCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred cCCceEEEecCCchhhC----ChhHhcccccCcEEECCCCc-ccccChhhcc---CCCCcCEEECCCC-CCCcCCHHH--
Confidence 67777888877766655 22213467788888887764 4555444444 6778888888877 454443321
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++| .+..+++..+ ..+++|+.|++++|.
T Consensus 113 -------~~~l~~L~~L~L~~n-~l~~l~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 113 -------FQNVPLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNN-NLERIEDDTF-----QATTSLQNLQLSSNR 176 (390)
T ss_dssp -------TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----SSCTTCCEEECCSSC
T ss_pred -------hcCCCCCCEEECCCC-ccCcCCHHH--hcCCCCCcEEECCCC-ccCccChhhc-----cCCCCCCEEECCCCc
Confidence 146777888888764 566665542 456778888888877 4555554432 357778888887665
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+. .++...+++|+.|+++++.. + .+...++|+.|++..+ ...++.. ..++|++|++. +.+.
T Consensus 177 l~----~~~~~~l~~L~~L~l~~n~l-~-------~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 177 LT----HVDLSLIPSLFHANVSYNLL-S-------TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLT 239 (390)
T ss_dssp CS----BCCGGGCTTCSEEECCSSCC-S-------EEECCSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSCCC
T ss_pred CC----ccccccccccceeecccccc-c-------ccCCCCcceEEECCCCeeeecccc-----ccccccEEECCCCCCc
Confidence 53 23455667777777776542 2 1223456777777733 3333322 23577777777 6666
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 444 (526)
.. ..+..+++|++|+++++......+..+..+++|+.|+++++ +++.++ .....+++|++|++++| .+..++..
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCC-cceecCcc
Confidence 54 35566777777777777544333445566777777777776 555554 23355677777777775 35555433
Q ss_pred ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042 445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC 497 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 497 (526)
+..+++|++|+++++ .++.++. ..+++|++|+++++
T Consensus 314 ------------~~~l~~L~~L~L~~N-~i~~~~~----~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 314 ------------QPQFDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHN 349 (390)
T ss_dssp ------------HHHHTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSS
T ss_pred ------------ccccCcCCEEECCCC-ccceeCc----hhhccCCEEEcCCC
Confidence 224677777777764 3555543 34677777777764
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.9e-22 Score=203.12 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=239.6
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.++|++|++++|.++.+. +.. +..+++|++|++++|.....+.|..+. .+++|++|++++| .+..+....
T Consensus 29 ~~~l~~L~Ls~n~i~~~~---~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~-- 98 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELN---ETS-FSRLQDLQFLKVEQQTPGLVIRNNTFR---GLSSLIILKLDYN-QFLQLETGA-- 98 (455)
T ss_dssp CTTCCEEECCSSCCCEEC---TTT-TSSCTTCCEEECCCCSTTCEECTTTTT---TCTTCCEEECTTC-TTCEECTTT--
T ss_pred CCccCEEEecCCccCcCC---hhH-hccCccccEEECcCCcccceECccccc---ccccCCEEeCCCC-ccCccChhh--
Confidence 578999999999887652 222 668999999999998765555555555 7999999999999 455543221
Q ss_pred hhhcccccccccccceeecccCccccc-cccCcccccCCCCccEEEeccCCCceecccc-ccCCccccccCCcceEEEee
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTS-FCTGDVHMLEFPSLKELWISRCPEFMVRFKR-TTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 284 (526)
+..+++|++|+++++. +.+ .+.. ..+..+++|++|++++| .+..+.+. ++ ..+++|++|++++
T Consensus 99 -------~~~l~~L~~L~L~~n~-l~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-----~~l~~L~~L~L~~ 163 (455)
T 3v47_A 99 -------FNGLANLEVLTLTQCN-LDGAVLSG-NFFKPLTSLEMLVLRDN-NIKKIQPASFF-----LNMRRFHVLDLTF 163 (455)
T ss_dssp -------TTTCTTCCEEECTTSC-CBTHHHHS-STTTTCTTCCEEECCSS-BCCSCCCCGGG-----GGCTTCCEEECTT
T ss_pred -------ccCcccCCEEeCCCCC-CCccccCc-ccccCcccCCEEECCCC-ccCccCccccc-----CCCCcccEEeCCC
Confidence 2679999999999864 443 2222 23668999999999999 45555433 22 4789999999998
Q ss_pred ccccccce-eccccccccccEEEeeeCCcccccccchhH--------hhcCCCccEEEEe-ec-cccccCCCcCcccccc
Q 039042 285 EYIITNKF-IFSEDLLCKLKCLDVEFVDELTTILSLDDF--------LQRFPTLKVLQIE-GY-SDWLPKEKVENGMEVI 353 (526)
Q Consensus 285 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--------l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~ 353 (526)
|.+..... .+..-...+|+.|+++++.... ++... +..+++|++|+++ +. ....+.........++
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~---~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQD---MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTT---CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CcccccChhhhhccccccccccccccCcccc---cchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 76632110 1111122688999998876443 22111 2345789999998 43 2222211110112378
Q ss_pred ceEEEec-cCce----------eeccccccc--cCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHH
Q 039042 354 IRRVFRC-YDLK----------YILKQESSI--MNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSI 420 (526)
Q Consensus 354 L~~L~l~-~~l~----------~~~~~~~~~--l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 420 (526)
|+.|.+. +... ......+.. .++|+.|++++|......+..+..+++|++|+++++ .+...+. ..
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~ 318 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDD-NA 318 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECT-TT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccCh-hH
Confidence 8999887 3221 111112222 368999999998766666667788999999999998 5666543 35
Q ss_pred HhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCc
Q 039042 421 AKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNM 500 (526)
Q Consensus 421 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l 500 (526)
+..+++|++|++++|. +..++.. .+..+++|++|+++++ .++.++... +..+++|++|++++| ++
T Consensus 319 ~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QL 383 (455)
T ss_dssp TTTCTTCCEEECCSSC-CCEECGG-----------GGTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CC
T ss_pred hcCcccCCEEECCCCc-cCCcChh-----------HhcCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-cc
Confidence 6788999999999964 5555332 1235799999999986 566664443 678999999999995 68
Q ss_pred cccCCCC-CCCcccceEEec
Q 039042 501 KGFSRGE-LSTPVLHKVQLN 519 (526)
Q Consensus 501 ~~l~~~~-~~~~~L~~l~l~ 519 (526)
+.+|... ..+++|++|+++
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECC
T ss_pred ccCCHhHhccCCcccEEEcc
Confidence 8888764 568999999998
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=8.2e-22 Score=198.32 Aligned_cols=306 Identities=18% Similarity=0.118 Sum_probs=168.1
Q ss_pred cCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccc
Q 039042 74 GSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTC 153 (526)
Q Consensus 74 ~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 153 (526)
.++++++|+++++.....|...+.+ +++|++|++++|.++.+... . +.
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~----------------------------l~~L~~L~L~~n~i~~~~~~---~-~~ 90 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDS----------------------------FRQVELLNLNDLQIEEIDTY---A-FA 90 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHH----------------------------CCCCSEEECTTSCCCEECTT---T-TT
T ss_pred ccCCceEEEecCCchhhCChhHhcc----------------------------cccCcEEECCCCcccccChh---h-cc
Confidence 5678888888887654446655545 34444555555544433111 1 33
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+++|++|++++|. ++.++|..+. .+++|++|++++| .+..++... +..+++|++|+++++ .+..
T Consensus 91 ~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~l~~~~---------~~~l~~L~~L~L~~n-~l~~ 155 (390)
T 3o6n_A 91 YAHTIQKLYMGFNA-IRYLPPHVFQ---NVPLLTVLVLERN-DLSSLPRGI---------FHNTPKLTTLSMSNN-NLER 155 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCB
T ss_pred CCCCcCEEECCCCC-CCcCCHHHhc---CCCCCCEEECCCC-ccCcCCHHH---------hcCCCCCcEEECCCC-ccCc
Confidence 45555555555542 3333333332 4555555555554 333333221 023455555555543 2333
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL 313 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 313 (526)
++... +..+++|++|+++++ .+..++. ..+++|++|+++++.+.. ++ ..++|++|+++++...
T Consensus 156 ~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--------~~l~~L~~L~l~~n~l~~----~~--~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 156 IEDDT--FQATTSLQNLQLSSN-RLTHVDL--------SLIPSLFHANVSYNLLST----LA--IPIAVEELDASHNSIN 218 (390)
T ss_dssp CCTTT--TSSCTTCCEEECCSS-CCSBCCG--------GGCTTCSEEECCSSCCSE----EE--CCSSCSEEECCSSCCC
T ss_pred cChhh--ccCCCCCCEEECCCC-cCCcccc--------ccccccceeecccccccc----cC--CCCcceEEECCCCeee
Confidence 32221 344555555555554 2333221 234555555555443311 11 1234555555554322
Q ss_pred cccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccc
Q 039042 314 TTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINL 391 (526)
Q Consensus 314 ~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 391 (526)
. ++. ...++|+.|++. +.....+ . ...+++|++|+++ +.+..+.+..+..+++|+.|++++| .+..+
T Consensus 219 ~---~~~---~~~~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 287 (390)
T 3o6n_A 219 V---VRG---PVNVELTILKLQHNNLTDTA--W--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL 287 (390)
T ss_dssp E---EEC---CCCSSCCEEECCSSCCCCCG--G--GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEE
T ss_pred e---ccc---cccccccEEECCCCCCcccH--H--HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCccc
Confidence 2 121 123455555555 2211111 1 1455677777777 7777777777888899999999887 45556
Q ss_pred cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042 392 VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNL 471 (526)
Q Consensus 392 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 471 (526)
+.....+++|++|+++++ .+..++ ..+..+++|+.|+++++. +..++. ..+++|+.|+++++
T Consensus 288 ~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~N~-i~~~~~--------------~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLKL--------------STHHTLKNLTLSHN 349 (390)
T ss_dssp ECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCCC--------------CTTCCCSEEECCSS
T ss_pred CcccCCCCCCCEEECCCC-cceecC--ccccccCcCCEEECCCCc-cceeCc--------------hhhccCCEEEcCCC
Confidence 666677899999999988 677665 345678999999999865 555432 25689999999885
Q ss_pred c
Q 039042 472 K 472 (526)
Q Consensus 472 ~ 472 (526)
+
T Consensus 350 ~ 350 (390)
T 3o6n_A 350 D 350 (390)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=8.5e-21 Score=196.19 Aligned_cols=297 Identities=19% Similarity=0.161 Sum_probs=153.8
Q ss_pred CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccccc
Q 039042 155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF 234 (526)
Q Consensus 155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 234 (526)
.++++.|++++|. ++.+.|..+. .+++|++|++++| .+..+.... +..+++|++|+++++ .+..+
T Consensus 31 ~~~l~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~i~~~~~~~---------~~~l~~L~~L~L~~n-~l~~~ 95 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLNQDEFA---SFPHLEELELNEN-IVSAVEPGA---------FNNLFNLRTLGLRSN-RLKLI 95 (477)
T ss_dssp CTTCSEEECCSSC-CCEECTTTTT---TCTTCCEEECTTS-CCCEECTTT---------TTTCTTCCEEECCSS-CCCSC
T ss_pred CCCCcEEECCCCc-cceECHhHcc---CCCCCCEEECCCC-ccCEeChhh---------hhCCccCCEEECCCC-cCCcc
Confidence 3456666666643 4444344433 5666666666666 444432211 145666666666653 45555
Q ss_pred ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccc
Q 039042 235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELT 314 (526)
Q Consensus 235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 314 (526)
+... +..+++|++|++++| .+..+++..+ ..+++|++|++++|.+.. +..-....+++|++|++++|.. +
T Consensus 96 ~~~~--~~~l~~L~~L~Ls~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l-~ 165 (477)
T 2id5_A 96 PLGV--FTGLSNLTKLDISEN-KIVILLDYMF-----QDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNL-T 165 (477)
T ss_dssp CTTS--STTCTTCCEEECTTS-CCCEECTTTT-----TTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCC-S
T ss_pred Cccc--ccCCCCCCEEECCCC-ccccCChhHc-----cccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcC-c
Confidence 4432 445666667766666 3444433222 256666666666554421 1111122455666666666542 2
Q ss_pred ccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccCC
Q 039042 315 TILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPS 394 (526)
Q Consensus 315 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 394 (526)
.++...+..+++|+.|++.. +.+..+.+..+..+++|+.|++++|..+..++..
T Consensus 166 --~~~~~~l~~l~~L~~L~l~~------------------------n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 166 --SIPTEALSHLHGLIVLRLRH------------------------LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp --SCCHHHHTTCTTCCEEEEES------------------------CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred --ccChhHhcccCCCcEEeCCC------------------------CcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 34444566666666666652 2333333334455556666666666555555554
Q ss_pred CccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccc
Q 039042 395 STSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSL 474 (526)
Q Consensus 395 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 474 (526)
.....+|++|+++++ +++.++. ..+..+++|+.|+++++. +..++.. .+..+++|++|+++++ .+
T Consensus 220 ~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l 284 (477)
T 2id5_A 220 CLYGLNLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS-----------MLHELLRLQEIQLVGG-QL 284 (477)
T ss_dssp TTTTCCCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT-----------SCTTCTTCCEEECCSS-CC
T ss_pred cccCccccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh-----------hccccccCCEEECCCC-cc
Confidence 444456666666665 4554432 244556666666666543 3333321 1224556666666653 34
Q ss_pred cccCCCCccccCCCccEEeEecCCCccccCCCC-CCCcccceEEec
Q 039042 475 RSFYSGNRALNFPSLERLLVDDCTNMKGFSRGE-LSTPVLHKVQLN 519 (526)
Q Consensus 475 ~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-~~~~~L~~l~l~ 519 (526)
+.+.... +..+++|++|++++| +++.++... ..+++|++|+++
T Consensus 285 ~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 285 AVVEPYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp SEECTTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred ceECHHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 4443332 445566666666664 455555432 345566666665
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.8e-21 Score=192.58 Aligned_cols=301 Identities=11% Similarity=0.120 Sum_probs=187.6
Q ss_pred hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
.+++|++|+++++.++.+- + +..+++|++|++++|. ++.+ |. +. .+++|++|++++| .+..++.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-----~-~~~~~~L~~L~l~~n~-i~~~-~~-~~---~l~~L~~L~L~~n-~i~~~~~--- 105 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-----G-IEYLTNLEYLNLNGNQ-ITDI-SP-LS---NLVKLTNLYIGTN-KITDISA--- 105 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-----T-GGGCTTCCEEECCSSC-CCCC-GG-GT---TCTTCCEEECCSS-CCCCCGG---
T ss_pred hcccccEEEEeCCccccch-----h-hhhcCCccEEEccCCc-cccc-hh-hh---cCCcCCEEEccCC-cccCchH---
Confidence 4788888888888776541 1 4578889999998874 4444 32 33 7888899998888 5555431
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+..+++|++|+++++ .+..++. +..+++|++|++++|..+..++. + ..+++|++|+++++
T Consensus 106 --------~~~l~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~-~------~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 106 --------LQNLTNLRELYLNED-NISDISP----LANLTKMYSLNLGANHNLSDLSP-L------SNMTGLNYLTVTES 165 (347)
T ss_dssp --------GTTCTTCSEEECTTS-CCCCCGG----GTTCTTCCEEECTTCTTCCCCGG-G------TTCTTCCEEECCSS
T ss_pred --------HcCCCcCCEEECcCC-cccCchh----hccCCceeEEECCCCCCcccccc-h------hhCCCCcEEEecCC
Confidence 267888888888875 4555432 45788888888888866665443 2 46788888888876
Q ss_pred cccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCc
Q 039042 286 YIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDL 363 (526)
Q Consensus 286 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l 363 (526)
.+.. ..+...+++|++|++++|.... ++ .+..+++|+.+++. +.....+. ...+++|++|++. +.+
T Consensus 166 ~~~~---~~~~~~l~~L~~L~l~~n~l~~---~~--~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 166 KVKD---VTPIANLTDLYSLSLNYNQIED---IS--PLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CCCC---CGGGGGCTTCSEEECTTSCCCC---CG--GGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC
T ss_pred CcCC---chhhccCCCCCEEEccCCcccc---cc--cccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc
Confidence 5532 1124467788888888765432 22 26677788888777 32221111 1455677777777 666
Q ss_pred eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecc
Q 039042 364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVL 443 (526)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 443 (526)
..+++ +..+++|++|++++|. +..+ +.+..+++|++|++++| .++.++ .+..+++|++|++++|......+.
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQ-ISDI-NAVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSC-CCCC-GGGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCCcc--hhcCCCCCEEECCCCc-cCCC-hhHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCcCCCcChh
Confidence 66543 5566777777777663 3333 23556667777777766 455543 345667777777776542222221
Q ss_pred cccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042 444 ADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
. +..+++|++|++++|+ ++.++. +..+++|++|++++|+
T Consensus 306 ~------------l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 306 V------------IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp H------------HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred H------------hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 1 2245677777777654 444433 3456777777776653
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=5.5e-21 Score=201.75 Aligned_cols=384 Identities=11% Similarity=0.071 Sum_probs=229.7
Q ss_pred eecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhh
Q 039042 54 ELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKL 133 (526)
Q Consensus 54 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L 133 (526)
+.++++++++..+|.. -.++|++|++++|.....|...+++ +++|++|
T Consensus 34 ~~l~ls~~~L~~ip~~----~~~~L~~L~Ls~N~i~~~~~~~~~~----------------------------l~~L~~L 81 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD----LPPRTKALSLSQNSISELRMPDISF----------------------------LSELRVL 81 (562)
T ss_dssp CEEECTTSCCCSCCTT----SCTTCCEEECCSSCCCCCCGGGTTT----------------------------CTTCCEE
T ss_pred cEEEcCCCCCccCCCC----CCCCcCEEECCCCCccccChhhhcc----------------------------CCCccEE
Confidence 5667777777666652 4678888888888766554432322 7788899
Q ss_pred cccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE--eecchhhhcc
Q 039042 134 ELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI--VVDNQEEERK 211 (526)
Q Consensus 134 ~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~--~~~~~~~~~~ 211 (526)
++++|.++.+.. .. +..+++|++|++++|. ++.+ |.. .+++|++|++++| .+..++ ..+
T Consensus 82 ~Ls~N~l~~~~~---~~-~~~l~~L~~L~Ls~N~-l~~l-p~~-----~l~~L~~L~Ls~N-~l~~l~~p~~~------- 142 (562)
T 3a79_B 82 RLSHNRIRSLDF---HV-FLFNQDLEYLDVSHNR-LQNI-SCC-----PMASLRHLDLSFN-DFDVLPVCKEF------- 142 (562)
T ss_dssp ECCSCCCCEECT---TT-TTTCTTCCEEECTTSC-CCEE-CSC-----CCTTCSEEECCSS-CCSBCCCCGGG-------
T ss_pred ECCCCCCCcCCH---HH-hCCCCCCCEEECCCCc-CCcc-Ccc-----ccccCCEEECCCC-CccccCchHhh-------
Confidence 999998775522 22 5578999999999875 5555 432 5889999999998 555543 222
Q ss_pred cccccccccceeecccCccccccccCcccccCCCCc--cEEEeccCCCc-eeccccccCC--------------------
Q 039042 212 NNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSL--KELWISRCPEF-MVRFKRTTND-------------------- 268 (526)
Q Consensus 212 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L--~~L~l~~c~~l-~~~~~~~~~~-------------------- 268 (526)
+.+++|++|+++++ .+.... +..+++| ++|++++|... ....+..+..
T Consensus 143 ---~~l~~L~~L~L~~n-~l~~~~-----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 143 ---GNLTKLTFLGLSAA-KFRQLD-----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp ---GGCTTCCEEEEECS-BCCTTT-----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred ---cccCcccEEecCCC-ccccCc-----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhh
Confidence 67889999999874 444321 3455666 99999887330 2111111000
Q ss_pred -ccccccCCcceEEEeecccc-cccee-c-cccccccccEEEeeeCCcccccccc-hhHhhcCCCccEEEEe-ec-cccc
Q 039042 269 -LTKKVFPNLEELIVDAEYII-TNKFI-F-SEDLLCKLKCLDVEFVDELTTILSL-DDFLQRFPTLKVLQIE-GY-SDWL 341 (526)
Q Consensus 269 -~~~~~l~~L~~L~l~~~~~~-~~~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~l~~L~~L~l~-~~-~~~~ 341 (526)
.....+++|+.++++++... ..+.. + .....++|+.+++.++..-. ..+. .......++|++|++. +. .+.+
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW-KCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH-HHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH-HHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 00012233333444322100 00000 0 00123344444444332111 0000 0011123478888887 44 3344
Q ss_pred cCCCcCc--cccc--------------------------cceEEEec-cCceeeccccccccCcccEEEEeccCCccccc
Q 039042 342 PKEKVEN--GMEV--------------------------IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLV 392 (526)
Q Consensus 342 ~~~~~~~--~~~~--------------------------~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 392 (526)
|...+.. ..++ +|++|++. +.+..+. ....+++|++|+++++......+
T Consensus 293 p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh
Confidence 4332110 1122 24444444 3332221 11567899999999987666566
Q ss_pred CCCccCCCcCEEEEccCCCcccccc-hHHHhhcccccEEEEccccccce-ecccccCCcccccCCCeeeeCccCeEecCC
Q 039042 393 PSSTSFQNLTSLEISYCNGLKNVLT-FSIAKTLVRLREMKIESCAMITE-IVLADDDDDHDAAKDEVIAFSELNELKLLN 470 (526)
Q Consensus 393 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 470 (526)
..+..+++|+.|+++++ +++.++. +..+..+++|+.|+++++. +.. ++.. .+..+++|++|++++
T Consensus 371 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-----------~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR-----------TCAWAESILVLNLSS 437 (562)
T ss_dssp TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-----------CCCCCTTCCEEECCS
T ss_pred hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-----------hhcCcccCCEEECCC
Confidence 77788999999999987 6776542 2346788999999999965 443 5442 233579999999998
Q ss_pred CccccccCCCCccccC-CCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 471 LKSLRSFYSGNRALNF-PSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 471 ~~~l~~l~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
+.--..++.. + ++|++|++++| +++.+|.+...+++|++|+++
T Consensus 438 n~l~~~~~~~-----l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 438 NMLTGSVFRC-----LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp SCCCGGGGSS-----CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECC
T ss_pred CCCCcchhhh-----hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECC
Confidence 7533444433 3 69999999997 789999887789999999998
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=203.13 Aligned_cols=303 Identities=16% Similarity=0.085 Sum_probs=175.3
Q ss_pred ccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccc
Q 039042 61 QDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSI 138 (526)
Q Consensus 61 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 138 (526)
.+...+|.. -.+++++|++++|.....+...+.++++|++ +.++. +..+.. ..+..+++|++|+|++|
T Consensus 21 ~~l~~ip~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~-----~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 21 KRFVAVPEG----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEP-----GAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp CCCSSCCSC----CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSS
T ss_pred CCcCcCCCC----CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeCh-----hhhhCCccCCEEECCCC
Confidence 344445542 2357788888877655554444666666666 44432 222211 11123677778888777
Q ss_pred ccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccccccccc
Q 039042 139 NIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFP 218 (526)
Q Consensus 139 ~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~ 218 (526)
.++.+ +.+.+..+++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++... +..++
T Consensus 91 ~l~~~----~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~---------~~~l~ 152 (477)
T 2id5_A 91 RLKLI----PLGVFTGLSNLTKLDISENK-IVILLDYMFQ---DLYNLKSLEVGDN-DLVYISHRA---------FSGLN 152 (477)
T ss_dssp CCCSC----CTTSSTTCTTCCEEECTTSC-CCEECTTTTT---TCTTCCEEEECCT-TCCEECTTS---------STTCT
T ss_pred cCCcc----CcccccCCCCCCEEECCCCc-cccCChhHcc---ccccCCEEECCCC-ccceeChhh---------ccCCC
Confidence 76654 22114467778888887764 3444454444 6777888888777 444443211 14677
Q ss_pred ccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccc-
Q 039042 219 QLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSED- 297 (526)
Q Consensus 219 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~- 297 (526)
+|++|+++++ .+..++... +..+++|+.|+++++ .+..++...+ ..+++|+.|+++++... ..++..
T Consensus 153 ~L~~L~l~~n-~l~~~~~~~--l~~l~~L~~L~l~~n-~i~~~~~~~~-----~~l~~L~~L~l~~~~~~---~~~~~~~ 220 (477)
T 2id5_A 153 SLEQLTLEKC-NLTSIPTEA--LSHLHGLIVLRLRHL-NINAIRDYSF-----KRLYRLKVLEISHWPYL---DTMTPNC 220 (477)
T ss_dssp TCCEEEEESC-CCSSCCHHH--HTTCTTCCEEEEESC-CCCEECTTCS-----CSCTTCCEEEEECCTTC---CEECTTT
T ss_pred CCCEEECCCC-cCcccChhH--hcccCCCcEEeCCCC-cCcEeChhhc-----ccCcccceeeCCCCccc---cccCccc
Confidence 7888887764 455554332 556777888887777 4555544332 35677777777765432 223322
Q ss_pred -ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecccccccc
Q 039042 298 -LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIM 374 (526)
Q Consensus 298 -~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l 374 (526)
...+|++|++++|. ++ .++...+..+++|+.|+++.+ ...++...+ ..+++|++|++. +.+..+.+..+..+
T Consensus 221 ~~~~~L~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp TTTCCCSEEEEESSC-CC--SCCHHHHTTCTTCCEEECCSSCCCEECTTSC--TTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred ccCccccEEECcCCc-cc--ccCHHHhcCccccCeeECCCCcCCccChhhc--cccccCCEEECCCCccceECHHHhcCc
Confidence 22377777777764 33 456556677777777777733 333333332 455667777776 66666666666666
Q ss_pred CcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042 375 NNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC 409 (526)
Q Consensus 375 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 409 (526)
++|+.|++++| .+..++. .+..+++|+.|+++++
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 77777777666 3333333 2345566666766655
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3.3e-22 Score=204.60 Aligned_cols=351 Identities=15% Similarity=0.098 Sum_probs=174.2
Q ss_pred HHHhccccccceeccccccccc-ccccccccccCCc-------------ccEEEEecCCCCCCchhhhhhccCccc--cc
Q 039042 43 LILQLQGIEDLELHELQEQDVN-YFANELVRVGSSQ-------------LKFLGIHGCRDALNPSAESKRQRQEES--AN 106 (526)
Q Consensus 43 ~~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~l~~-------------L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~ 106 (526)
+...++++.+|+.++++++.+. .+|.. .+.+.+ +++|++++|.....|.. .++|++ +.
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~~L~l~ 99 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLESLVAS 99 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCSEEECC
T ss_pred CChhHhcccchhhhhccCCcccccCCcc--cccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCCEEEcc
Confidence 4555677777777777765543 34442 223333 47777777765444431 234554 32
Q ss_pred ccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccc
Q 039042 107 DMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRL 186 (526)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L 186 (526)
++ .+..++.. +++|++|++++|.++.+ +. ..++|++|++++|. ++.+ |. + +.+++|
T Consensus 100 ~n-~l~~lp~~---------~~~L~~L~l~~n~l~~l----~~----~~~~L~~L~L~~n~-l~~l-p~-~---~~l~~L 155 (454)
T 1jl5_A 100 CN-SLTELPEL---------PQSLKSLLVDNNNLKAL----SD----LPPLLEYLGVSNNQ-LEKL-PE-L---QNSSFL 155 (454)
T ss_dssp SS-CCSSCCCC---------CTTCCEEECCSSCCSCC----CS----CCTTCCEEECCSSC-CSSC-CC-C---TTCTTC
T ss_pred CC-cCCccccc---------cCCCcEEECCCCccCcc----cC----CCCCCCEEECcCCC-CCCC-cc-c---CCCCCC
Confidence 22 22223211 35677777777665543 11 12567777777653 3333 42 2 366777
Q ss_pred cEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccccc
Q 039042 187 QYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTT 266 (526)
Q Consensus 187 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 266 (526)
++|++++| .+..++. ..++|++|+++++ .+..++ . +..+++|++|++++| .+..++.
T Consensus 156 ~~L~l~~N-~l~~lp~-------------~~~~L~~L~L~~n-~l~~l~-~---~~~l~~L~~L~l~~N-~l~~l~~--- 212 (454)
T 1jl5_A 156 KIIDVDNN-SLKKLPD-------------LPPSLEFIAAGNN-QLEELP-E---LQNLPFLTAIYADNN-SLKKLPD--- 212 (454)
T ss_dssp CEEECCSS-CCSCCCC-------------CCTTCCEEECCSS-CCSSCC-C---CTTCTTCCEEECCSS-CCSSCCC---
T ss_pred CEEECCCC-cCcccCC-------------CcccccEEECcCC-cCCcCc-c---ccCCCCCCEEECCCC-cCCcCCC---
Confidence 77777776 4444332 2346777777664 455554 2 556777777777766 3444331
Q ss_pred CCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCC
Q 039042 267 NDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEK 345 (526)
Q Consensus 267 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~ 345 (526)
..++|+.|++++|.+. .+. ....+++|++|++++|.. + .+|. .+++|+.|+++ +....++
T Consensus 213 ------~~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l-~--~l~~----~~~~L~~L~l~~N~l~~l~--- 273 (454)
T 1jl5_A 213 ------LPLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLL-K--TLPD----LPPSLEALNVRDNYLTDLP--- 273 (454)
T ss_dssp ------CCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCC-S--SCCS----CCTTCCEEECCSSCCSCCC---
T ss_pred ------CcCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcC-C--cccc----cccccCEEECCCCcccccC---
Confidence 2346777777766553 221 123456677777766543 2 2332 23667777776 3222233
Q ss_pred cCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhc
Q 039042 346 VENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTL 424 (526)
Q Consensus 346 ~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 424 (526)
..+++|++|+++ +.+..++.. .++|+.|++++|. +..++. .+++|+.|+++++ +++.++. .+
T Consensus 274 ---~~~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~-l~~i~~---~~~~L~~L~Ls~N-~l~~lp~-----~~ 336 (454)
T 1jl5_A 274 ---ELPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNE-IRSLCD---LPPSLEELNVSNN-KLIELPA-----LP 336 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSEESCC----CTTCCEEECCSSC-CSEECC---CCTTCCEEECCSS-CCSCCCC-----CC
T ss_pred ---cccCcCCEEECcCCccCcccCc----CCcCCEEECcCCc-CCcccC---CcCcCCEEECCCC-ccccccc-----cC
Confidence 123567777777 666654311 2567777777663 223321 1247777777765 4555442 24
Q ss_pred ccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccc---cCCCCccccC-------------CC
Q 039042 425 VRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRS---FYSGNRALNF-------------PS 488 (526)
Q Consensus 425 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~~~~-------------~~ 488 (526)
++|+.|++++| .+..++. .+++|++|+++++ .+.. +|.. +..+ ++
T Consensus 337 ~~L~~L~L~~N-~l~~lp~---------------~l~~L~~L~L~~N-~l~~l~~ip~~--l~~L~~n~~~~~i~~~~~~ 397 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE---------------LPQNLKQLHVEYN-PLREFPDIPES--VEDLRMNSHLAEVPELPQN 397 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCSSCCCCCTT--CCEEECCC-----------
T ss_pred CcCCEEECCCC-ccccccc---------------hhhhccEEECCCC-CCCcCCCChHH--HHhhhhcccccccccccCc
Confidence 67777777775 3554443 2467778887764 3433 3332 2223 66
Q ss_pred ccEEeEecCCCccc
Q 039042 489 LERLLVDDCTNMKG 502 (526)
Q Consensus 489 L~~L~l~~C~~l~~ 502 (526)
|+.|++++++ +..
T Consensus 398 L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 398 LKQLHVETNP-LRE 410 (454)
T ss_dssp --------------
T ss_pred CCEEECCCCc-CCc
Confidence 7777777743 443
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-21 Score=206.63 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=68.8
Q ss_pred cccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042 349 GMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL 427 (526)
Q Consensus 349 ~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 427 (526)
..+++|++|+++ +.+..+.+..+..+++|+.|++++| .+..++.....+++|+.|++++| .+..++ ..+..+++|
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L 326 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRL 326 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTC
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccC--cccccCCCC
Confidence 445666666666 6666666666777777888887776 34455555566778888888776 455555 345667888
Q ss_pred cEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042 428 REMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK 472 (526)
Q Consensus 428 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 472 (526)
+.|++++|. +..++. ..+++|+.|++++++
T Consensus 327 ~~L~L~~N~-l~~~~~--------------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNS-IVTLKL--------------STHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSC-CCCCCC--------------CTTCCCSEEECCSSC
T ss_pred CEEECCCCC-CCCcCh--------------hhcCCCCEEEeeCCC
Confidence 888887754 443321 246778888887754
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=2.3e-21 Score=191.90 Aligned_cols=302 Identities=15% Similarity=0.118 Sum_probs=179.0
Q ss_pred ccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhccccccccccccccccccc
Q 039042 73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMT 152 (526)
Q Consensus 73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 152 (526)
..+++|++|++++|.....|. +.. +++|++|++++|.++.+.. +
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~--~~~----------------------------~~~L~~L~l~~n~i~~~~~------~ 84 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG--IEY----------------------------LTNLEYLNLNGNQITDISP------L 84 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT--GGG----------------------------CTTCCEEECCSSCCCCCGG------G
T ss_pred hhcccccEEEEeCCccccchh--hhh----------------------------cCCccEEEccCCccccchh------h
Confidence 357888888888876544332 222 5556666666665554311 2
Q ss_pred ccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042 153 CGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT 232 (526)
Q Consensus 153 ~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 232 (526)
..+++|++|++++|. ++.+ | . ++.+++|++|++++| .+..++. +..+++|++|++++|....
T Consensus 85 ~~l~~L~~L~L~~n~-i~~~-~-~---~~~l~~L~~L~l~~n-~i~~~~~-----------~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNK-ITDI-S-A---LQNLTNLRELYLNED-NISDISP-----------LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp TTCTTCCEEECCSSC-CCCC-G-G---GTTCTTCSEEECTTS-CCCCCGG-----------GTTCTTCCEEECTTCTTCC
T ss_pred hcCCcCCEEEccCCc-ccCc-h-H---HcCCCcCCEEECcCC-cccCchh-----------hccCCceeEEECCCCCCcc
Confidence 356666666666653 3332 2 2 225666666666665 3333322 1456666666666654444
Q ss_pred ccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCc
Q 039042 233 SFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDE 312 (526)
Q Consensus 233 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 312 (526)
.++. +..+++|++|++++| .+..++. + ..+++|++|++++|.+.. +. +...+++|+.++++++..
T Consensus 147 ~~~~----~~~l~~L~~L~l~~~-~~~~~~~-~------~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 147 DLSP----LSNMTGLNYLTVTES-KVKDVTP-I------ANLTDLYSLSLNYNQIED-IS--PLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp CCGG----GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCSEEECTTSCCCC-CG--GGGGCTTCCEEECCSSCC
T ss_pred cccc----hhhCCCCcEEEecCC-CcCCchh-h------ccCCCCCEEEccCCcccc-cc--cccCCCccceeecccCCC
Confidence 3321 345666666666666 3333332 1 356666666666554421 11 133456667777666543
Q ss_pred ccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCccc
Q 039042 313 LTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN 390 (526)
Q Consensus 313 l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~ 390 (526)
.. .+ .+..+++|++|++. |....++. ...+++|++|++. +.+..+ ..+..+++|+.|++++| .+..
T Consensus 212 ~~---~~--~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n-~l~~ 279 (347)
T 4fmz_A 212 TD---IT--PVANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN-QISD 279 (347)
T ss_dssp CC---CG--GGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCC
T ss_pred CC---Cc--hhhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC-ccCC
Confidence 22 11 25566777777776 33222221 1456777888877 666665 35677889999999988 4444
Q ss_pred ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCC
Q 039042 391 LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLN 470 (526)
Q Consensus 391 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 470 (526)
+ +.+..+++|+.|++++| .+...+. ..+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 280 ~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 280 I-SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-------------LASLSKMDSADFAN 342 (347)
T ss_dssp C-GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-------------GGGCTTCSEESSSC
T ss_pred C-hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC-------------hhhhhccceeehhh
Confidence 4 34677899999999988 4555432 466788999999999976 554433 12579999999998
Q ss_pred Cc
Q 039042 471 LK 472 (526)
Q Consensus 471 ~~ 472 (526)
++
T Consensus 343 N~ 344 (347)
T 4fmz_A 343 QV 344 (347)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-21 Score=206.07 Aligned_cols=305 Identities=14% Similarity=0.078 Sum_probs=225.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+.+++.|+++++.+..+ |.+.+..+++|++|++++|. ++.++|..++ .+++|++|++++| .+..++...
T Consensus 50 l~~l~~l~l~~~~l~~l----p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~-- 118 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKL----PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA---YAHTIQKLYMGFN-AIRYLPPHV-- 118 (597)
T ss_dssp GCCCSEEEESSCEESEE----CTHHHHHCCCCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred CCCceEEEeeCCCCCCc----CHHHHccCCCCcEEECCCCC-CCCCChHHhc---CCCCCCEEECCCC-cCCCCCHHH--
Confidence 77888899998877765 32224578999999999874 5566555555 7899999999998 465554432
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
++.+++|++|+++++ .+..++... +..+++|++|++++| .+..+++..+ ..+++|+.|++++|.
T Consensus 119 -------~~~l~~L~~L~L~~n-~l~~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 119 -------FQNVPLLTVLVLERN-DLSSLPRGI--FHNTPKLTTLSMSNN-NLERIEDDTF-----QATTSLQNLQLSSNR 182 (597)
T ss_dssp -------TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECTTSC
T ss_pred -------HcCCCCCCEEEeeCC-CCCCCCHHH--hccCCCCCEEEeeCC-cCCCCChhhh-----hcCCcCcEEECcCCC
Confidence 257899999999985 677776652 568899999999998 5666665433 368899999999776
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+. .++...+++|+.|+++++.. + .+...++|+.|+++.+ ...++.. ..++|+.|++. +.+.
T Consensus 183 l~----~~~~~~l~~L~~L~l~~n~l-~-------~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 183 LT----HVDLSLIPSLFHANVSYNLL-S-------TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLT 245 (597)
T ss_dssp CS----BCCGGGCTTCSEEECCSSCC-S-------EEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCC
T ss_pred CC----CcChhhhhhhhhhhcccCcc-c-------cccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCC
Confidence 63 34666788999999988643 2 2234568899998843 4433322 23689999999 7777
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 444 (526)
.. ..+..+++|+.|++++|......|..+..+++|+.|+++++ .+..++ .....+++|+.|++++|. +..++..
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N~-l~~i~~~ 319 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVERN 319 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCGGG
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCCC-CCccCcc
Confidence 64 56778899999999998655555666788899999999987 677765 344678999999999864 5566654
Q ss_pred ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042 445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
+..+++|++|+++++ .+..++. ..+++|+.|++++++
T Consensus 320 ------------~~~l~~L~~L~L~~N-~l~~~~~----~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 ------------QPQFDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHND 356 (597)
T ss_dssp ------------HHHHTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSSC
T ss_pred ------------cccCCCCCEEECCCC-CCCCcCh----hhcCCCCEEEeeCCC
Confidence 236899999999985 4666654 358999999998864
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.1e-20 Score=202.31 Aligned_cols=413 Identities=14% Similarity=0.093 Sum_probs=257.3
Q ss_pred HhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhccccccc
Q 039042 45 LQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANIS 122 (526)
Q Consensus 45 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~ 122 (526)
..|.++.+|+.++++.+.+..++.. ...++++|++|+|++|.....|...+.++++|++ +.++. +..++..
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~----- 142 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENF----- 142 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTC-----
T ss_pred HHHhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChh-----
Confidence 4578889999999999988887653 3467899999999999866668888999999999 66653 4444331
Q ss_pred chhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCccccccccc-------------------
Q 039042 123 NTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSF------------------- 183 (526)
Q Consensus 123 ~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l------------------- 183 (526)
.++.+++|++|++++|.++.+.. |.. +..+++|++|++++|. ++.+.|..+..+..+
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~--~~~-~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~ 218 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKL--PEY-FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 218 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCC--CGG-GGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred hhhcCcccCeeccccCccccCCC--chh-hccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcccCcccccCc
Confidence 12348999999999997765422 222 5589999999999874 444444433211111
Q ss_pred -----ccccEEeeeccccc--------------cE--EEeecchh--------------------------------hhc
Q 039042 184 -----VRLQYIRIEKCHVL--------------EE--LIVVDNQE--------------------------------EER 210 (526)
Q Consensus 184 -----~~L~~L~l~~~~~l--------------~~--l~~~~~~~--------------------------------~~~ 210 (526)
..++.+++.++... +. +....... ...
T Consensus 219 ~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 298 (635)
T 4g8a_A 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI 298 (635)
T ss_dssp TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC
T ss_pred ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccch
Confidence 11122222221000 00 00000000 000
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCC--------------ccccccCC
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTND--------------LTKKVFPN 276 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--------------~~~~~l~~ 276 (526)
......+.+++.+.+.++. +..+.. .....+|+.|.+.+| .+..++...... .....+++
T Consensus 299 ~~~~~~~~~l~~l~~~~~~-~~~~~~----~~~~~~L~~L~l~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 299 IDLFNCLTNVSSFSLVSVT-IERVKD----FSYNFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp TTTTGGGTTCSEEEEESCE-EEECGG----GGSCCCCSEEEEESC-EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred hhhhhhhcccccccccccc-cccccc----cccchhhhhhhcccc-cccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 0001223344555544422 111111 223445555555544 122111110000 00135788
Q ss_pred cceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCccccc
Q 039042 277 LEELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGMEV 352 (526)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~ 352 (526)
|+.++++.+.+.. ....+. ....+|+.+++..+.... .+ ..+..+++|+.+.+. +. ....+...+ ..++
T Consensus 373 L~~L~ls~n~l~~-~~~~~~~~~~~~~L~~L~~~~~~~~~---~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~--~~l~ 445 (635)
T 4g8a_A 373 LEFLDLSRNGLSF-KGCCSQSDFGTISLKYLDLSFNGVIT---MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLR 445 (635)
T ss_dssp CCEEECCSSCCBE-EEECCHHHHSCSCCCEEECCSCSEEE---EC-SCCTTCTTCCEEECTTSEEESTTSSCTT--TTCT
T ss_pred cccchhhcccccc-ccccccchhhhhhhhhhhcccccccc---cc-ccccccccccchhhhhcccccccccccc--cccc
Confidence 9999988665521 111222 246689999998876544 22 245678999999988 33 333333322 5678
Q ss_pred cceEEEec-cCceeeccccccccCcccEEEEeccCCccc-ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042 353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN-LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM 430 (526)
Q Consensus 353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 430 (526)
+++.+++. +.+....+..+..+++|+.|+++++..... .|..+..+++|++|++++| +++.+++ ..+..+++|++|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L 523 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVL 523 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEE
Confidence 99999999 889988888888999999999999876654 4456778899999999998 6777753 366789999999
Q ss_pred EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccC-CCccEEeEecC
Q 039042 431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNF-PSLERLLVDDC 497 (526)
Q Consensus 431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~-~~L~~L~l~~C 497 (526)
+++++ .+..++.. .+..+++|+.|++++ +.++.++... +..+ ++|+.|+++++
T Consensus 524 ~Ls~N-~l~~l~~~-----------~~~~l~~L~~L~Ls~-N~l~~~~~~~-l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 524 NMSHN-NFFSLDTF-----------PYKCLNSLQVLDYSL-NHIMTSKKQE-LQHFPSSLAFLNLTQN 577 (635)
T ss_dssp ECTTS-CCCBCCCG-----------GGTTCTTCCEEECTT-SCCCBCCSSC-TTCCCTTCCEEECTTC
T ss_pred ECCCC-cCCCCChh-----------HHhCCCCCCEEECCC-CcCCCCCHHH-HHhhhCcCCEEEeeCC
Confidence 99985 46666443 133578999999998 4677776654 4555 68999999874
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6e-21 Score=195.39 Aligned_cols=262 Identities=15% Similarity=0.041 Sum_probs=135.9
Q ss_pred cccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccccccccc
Q 039042 72 RVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVA 149 (526)
Q Consensus 72 ~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~ 149 (526)
.+.+++|++|++++|.....|. ++.+++|++ +.++. +..++ ++.+++|++|++++|.++.+ +
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~-l~~~~--------~~~l~~L~~L~Ls~N~l~~~----~- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN-ITTLD--------LSQNTNLTYLACDSNKLTNL----D- 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSC-CSCCC--------CTTCTTCSEEECCSSCCSCC----C-
T ss_pred hhHcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCc-CCeEc--------cccCCCCCEEECcCCCCcee----e-
Confidence 3457777777777776554452 455555555 33332 22221 11256666666666665544 2
Q ss_pred cccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCc
Q 039042 150 AMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLE 229 (526)
Q Consensus 150 ~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 229 (526)
+..+++|++|++++|. ++.+ | ++.+++|++|++++| .+..++ . +.+++|++|+++++.
T Consensus 102 --~~~l~~L~~L~L~~N~-l~~l-~-----~~~l~~L~~L~l~~N-~l~~l~--l----------~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNK-LTKL-D-----VSQNPLLTYLNCARN-TLTEID--V----------SHNTQLTELDCHLNK 159 (457)
T ss_dssp --CTTCTTCCEEECCSSC-CSCC-C-----CTTCTTCCEEECTTS-CCSCCC--C----------TTCTTCCEEECTTCS
T ss_pred --cCCCCcCCEEECCCCc-CCee-c-----CCCCCcCCEEECCCC-ccceec--c----------ccCCcCCEEECCCCC
Confidence 3356666666666653 3332 2 225666666666666 343332 1 456666666666655
Q ss_pred cccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeee
Q 039042 230 KLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEF 309 (526)
Q Consensus 230 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 309 (526)
.+..++ +..+++|++|++++| +++.++ + ..+++|+.|++++|.+.. ++...+++|++|++++
T Consensus 160 ~~~~~~-----~~~l~~L~~L~ls~n-~l~~l~--l------~~l~~L~~L~l~~N~l~~----~~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 160 KITKLD-----VTPQTQLTTLDCSFN-KITELD--V------SQNKLLNRLNCDTNNITK----LDLNQNIQLTFLDCSS 221 (457)
T ss_dssp CCCCCC-----CTTCTTCCEEECCSS-CCCCCC--C------TTCTTCCEEECCSSCCSC----CCCTTCTTCSEEECCS
T ss_pred cccccc-----cccCCcCCEEECCCC-ccceec--c------ccCCCCCEEECcCCcCCe----eccccCCCCCEEECcC
Confidence 444442 335666666666666 455543 1 245666666666555422 2344556666666666
Q ss_pred CCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCc
Q 039042 310 VDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRL 388 (526)
Q Consensus 310 ~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l 388 (526)
|.. + .+| +..+++|+.|+++ +....++. ..+++|+.|++. ..+|+.|++++|...
T Consensus 222 N~l-~--~ip---~~~l~~L~~L~l~~N~l~~~~~-----~~l~~L~~L~l~-------------~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 222 NKL-T--EID---VTPLTQLTYFDCSVNPLTELDV-----STLSKLTTLHCI-------------QTDLLEIDLTHNTQL 277 (457)
T ss_dssp SCC-S--CCC---CTTCTTCSEEECCSSCCSCCCC-----TTCTTCCEEECT-------------TCCCSCCCCTTCTTC
T ss_pred Ccc-c--ccC---ccccCCCCEEEeeCCcCCCcCH-----HHCCCCCEEecc-------------CCCCCEEECCCCccC
Confidence 543 2 233 4456666666666 22222221 233455555543 013444444444444
Q ss_pred ccccCCCccCCCcCEEEEccCCCcccc
Q 039042 389 INLVPSSTSFQNLTSLEISYCNGLKNV 415 (526)
Q Consensus 389 ~~l~~~~~~~~~L~~L~l~~c~~l~~~ 415 (526)
..+| ...+++|+.|++++|+.+..+
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred Cccc--ccccccCCEEECCCCccccee
Confidence 4443 234455555666555444433
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=7.2e-21 Score=194.81 Aligned_cols=290 Identities=18% Similarity=0.093 Sum_probs=164.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.+ + ++.+++|++|++++|. ++.+ | ++.+++|++|++++| .+..++ +
T Consensus 63 l~~L~~L~Ls~n~l~~~----~---~~~l~~L~~L~Ls~N~-l~~~-~-----~~~l~~L~~L~L~~N-~l~~l~--~-- 123 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL----D---LSQNTNLTYLACDSNK-LTNL-D-----VTPLTKLTYLNCDTN-KLTKLD--V-- 123 (457)
T ss_dssp CTTCSEEECCSSCCSCC----C---CTTCTTCSEEECCSSC-CSCC-C-----CTTCTTCCEEECCSS-CCSCCC--C--
T ss_pred cCCCCEEEccCCcCCeE----c---cccCCCCCEEECcCCC-Ccee-e-----cCCCCcCCEEECCCC-cCCeec--C--
Confidence 56666666666665544 2 2356666666666653 3332 2 225666666666666 344332 1
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+.+++|++|+++++ .++.++ ++.+++|++|++++|..+..++ + ..+++|+.|++++|.
T Consensus 124 --------~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 124 --------SQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDCHLNKKITKLD--V------TPQTQLTTLDCSFNK 181 (457)
T ss_dssp --------TTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEECTTCSCCCCCC--C------TTCTTCCEEECCSSC
T ss_pred --------CCCCcCCEEECCCC-ccceec-----cccCCcCCEEECCCCCcccccc--c------ccCCcCCEEECCCCc
Confidence 45666666666653 344442 3356666666666664444332 1 245666666666554
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+. .++...+++|+.|++++|..-. + .+..+++|+.|+++ +....+| ...+++|++|+++ +.+.
T Consensus 182 l~----~l~l~~l~~L~~L~l~~N~l~~---~---~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 182 IT----ELDVSQNKLLNRLNCDTNNITK---L---DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CC----CCCCTTCTTCCEEECCSSCCSC---C---CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCS
T ss_pred cc----eeccccCCCCCEEECcCCcCCe---e---ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCC
Confidence 42 2344455666666666554322 1 24455666666665 2222222 1344556666665 5555
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 444 (526)
.++ ...+++|+.|++++ .+|+.|++++|+.+..++ .+.+++|+.|++++|..++.++..
T Consensus 247 ~~~---~~~l~~L~~L~l~~--------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQ--------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CCC---CTTCTTCCEEECTT--------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred CcC---HHHCCCCCEEeccC--------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccC
Confidence 543 22344555555433 246667777776555554 256799999999999888887753
Q ss_pred ccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcccc
Q 039042 445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGF 503 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l 503 (526)
....... .+..+++|++|++++ +.++.++ +..+++|+.|+++++ +++.+
T Consensus 306 ~~~L~~L----~l~~~~~L~~L~L~~-N~l~~l~----l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 306 AAGITEL----DLSQNPKLVYLYLNN-TELTELD----VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TCCCSCC----CCTTCTTCCEEECTT-CCCSCCC----CTTCTTCSEEECCSS-CCCBC
T ss_pred CCcceEe----chhhcccCCEEECCC-Ccccccc----cccCCcCcEEECCCC-CCCCc
Confidence 2221111 133567888898887 4566664 456899999999874 45443
No 40
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=7.5e-22 Score=209.84 Aligned_cols=377 Identities=13% Similarity=0.015 Sum_probs=206.6
Q ss_pred cCCcccEEEEecCCCCCCchhhhhh-ccC-ccc--ccccccchhhhcccccccchhhhhhhhhhcccccccccc---ccc
Q 039042 74 GSSQLKFLGIHGCRDALNPSAESKR-QRQ-EES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERI---WRN 146 (526)
Q Consensus 74 ~l~~L~~L~L~~c~~~~~p~~~l~~-l~~-L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~---~~~ 146 (526)
.+++|++|++++|.........+.. +++ |++ +.+|..+...... .....+++|++|+|++|.+++. |..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL----SIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH----HHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH----HHHhhCCCCCEEECccccccCcchhHHH
Confidence 5889999999998533332223444 444 888 7777643221110 0112378899999999965432 111
Q ss_pred ccccccccCCcccEEEeccCCCc----eecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccce
Q 039042 147 QVAAMTCGIQNLTHLTLYNCMNL----RCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQY 222 (526)
Q Consensus 147 ~~~~~~~~l~~L~~L~L~~c~~l----~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~ 222 (526)
.. ...+++|++|+++++..- ..+ +..+. .+++|++|++++| .+..++... ..+++|++
T Consensus 186 ~~---~~~~~~L~~L~L~~n~~~~~~~~~l-~~~~~---~~~~L~~L~L~~~-~~~~l~~~~----------~~~~~L~~ 247 (592)
T 3ogk_B 186 EL---AQHNTSLEVLNFYMTEFAKISPKDL-ETIAR---NCRSLVSVKVGDF-EILELVGFF----------KAAANLEE 247 (592)
T ss_dssp HH---HHHCCCCCEEECTTCCCSSCCHHHH-HHHHH---HCTTCCEEECSSC-BGGGGHHHH----------HHCTTCCE
T ss_pred HH---HhcCCCccEEEeeccCCCccCHHHH-HHHHh---hCCCCcEEeccCc-cHHHHHHHH----------hhhhHHHh
Confidence 11 336889999999876532 111 22222 6788999999887 343333221 46778888
Q ss_pred eecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceecc--ccccc
Q 039042 223 LKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS--EDLLC 300 (526)
Q Consensus 223 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~ 300 (526)
|+++.+............+..+++|+.|.++++ ....++..+ ..+++|++|++++|.+.. ..+. ...++
T Consensus 248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~------~~~~~L~~L~Ls~~~l~~--~~~~~~~~~~~ 318 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILF------PFAAQIRKLDLLYALLET--EDHCTLIQKCP 318 (592)
T ss_dssp EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGG------GGGGGCCEEEETTCCCCH--HHHHHHHTTCT
T ss_pred hcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHH------hhcCCCcEEecCCCcCCH--HHHHHHHHhCc
Confidence 888653222111111112556777777777664 222233222 356778888887665422 1111 24567
Q ss_pred cccEEEeeeCCcccccccchhHhhcCCCccEEEEe-----------ec-cccccCCCcCccccccceEEEec-cCceeec
Q 039042 301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-----------GY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYIL 367 (526)
Q Consensus 301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-----------~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~ 367 (526)
+|++|+++++ +. +.........+++|++|++. |+ ........+ ...+++|++|.+. +.+....
T Consensus 319 ~L~~L~L~~~--~~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 319 NLEVLETRNV--IG-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TCCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEEEESCCCHHH
T ss_pred CCCEEeccCc--cC-HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEeecCCccHHH
Confidence 7888877732 22 11122234567778888777 22 110000000 1346778888776 5555443
Q ss_pred cccccc-cCcccEEEEec---cCCcccccC------CCccCCCcCEEEEccCCC-cccccchHHHhhcccccEEEEcccc
Q 039042 368 KQESSI-MNNLVILHVTN---CHRLINLVP------SSTSFQNLTSLEISYCNG-LKNVLTFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 368 ~~~~~~-l~~L~~L~l~~---c~~l~~l~~------~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~i~~c~ 436 (526)
...+.. +++|+.|++++ |..+...|. ....+++|++|+++.|.+ +.+.........+++|+.|++++|.
T Consensus 395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 333333 67788888874 334443221 134577788888876653 3433323344457788888887764
Q ss_pred cccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCC
Q 039042 437 MITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 437 ~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
+.+. +.. ....+++|++|++++|+ ++..........+++|++|++++|.
T Consensus 475 -l~~~~~~~-----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 475 -ESDEGLME-----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -SSHHHHHH-----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred -CCHHHHHH-----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 3221 110 01245778888888876 4432211123457888888888876
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.1e-19 Score=185.77 Aligned_cols=373 Identities=16% Similarity=0.088 Sum_probs=218.2
Q ss_pred cccceecccccccccccccccccccCCcccEEEEecCCCCCC-chhhhhhccCccc--cccccc--chhhhcccccccch
Q 039042 50 IEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQS--NELILEDNANISNT 124 (526)
Q Consensus 50 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~--l~~~~~~~~~~~~~ 124 (526)
..+|+.++++.+.+..+|.. .+.+++|++|++++|..... |.. ++++++|+. +.+|.. ++.+...++....+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVE--AENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccchhhhcccCchhhCChh--HhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 35677777877777777763 46788888888888876544 543 455555544 333321 11111111110000
Q ss_pred -hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEee
Q 039042 125 -LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV 203 (526)
Q Consensus 125 -~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~ 203 (526)
...++|++|++++|.++.+ |. .+++|++|++++|. ++.+ |. ..++|++|++++| .+..++ .
T Consensus 87 p~~~~~L~~L~l~~n~l~~l----p~----~~~~L~~L~l~~n~-l~~l-~~------~~~~L~~L~L~~n-~l~~lp-~ 148 (454)
T 1jl5_A 87 PELPPHLESLVASCNSLTEL----PE----LPQSLKSLLVDNNN-LKAL-SD------LPPLLEYLGVSNN-QLEKLP-E 148 (454)
T ss_dssp CSCCTTCSEEECCSSCCSSC----CC----CCTTCCEEECCSSC-CSCC-CS------CCTTCCEEECCSS-CCSSCC-C
T ss_pred CCCcCCCCEEEccCCcCCcc----cc----ccCCCcEEECCCCc-cCcc-cC------CCCCCCEEECcCC-CCCCCc-c
Confidence 0146788888888877654 32 34778888888763 3332 32 2257888888887 555555 2
Q ss_pred cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042 204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD 283 (526)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 283 (526)
+ +.+++|++|+++++ .++.++.. .++|++|++++| .++.++ .+ ..+++|++|+++
T Consensus 149 ~----------~~l~~L~~L~l~~N-~l~~lp~~------~~~L~~L~L~~n-~l~~l~-~~------~~l~~L~~L~l~ 203 (454)
T 1jl5_A 149 L----------QNSSFLKIIDVDNN-SLKKLPDL------PPSLEFIAAGNN-QLEELP-EL------QNLPFLTAIYAD 203 (454)
T ss_dssp C----------TTCTTCCEEECCSS-CCSCCCCC------CTTCCEEECCSS-CCSSCC-CC------TTCTTCCEEECC
T ss_pred c----------CCCCCCCEEECCCC-cCcccCCC------cccccEEECcCC-cCCcCc-cc------cCCCCCCEEECC
Confidence 2 67888999998875 56666543 468899999888 566665 33 468889999998
Q ss_pred eccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-c
Q 039042 284 AEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-Y 361 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~ 361 (526)
+|.+.. +|. ..++|++|++++|. ++ .+|. +..+++|++|+++.+ ...++ ..+++|++|++. +
T Consensus 204 ~N~l~~----l~~-~~~~L~~L~l~~n~-l~--~lp~--~~~l~~L~~L~l~~N~l~~l~------~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 204 NNSLKK----LPD-LPLSLESIVAGNNI-LE--ELPE--LQNLPFLTTIYADNNLLKTLP------DLPPSLEALNVRDN 267 (454)
T ss_dssp SSCCSS----CCC-CCTTCCEEECCSSC-CS--SCCC--CTTCTTCCEEECCSSCCSSCC------SCCTTCCEEECCSS
T ss_pred CCcCCc----CCC-CcCcccEEECcCCc-CC--cccc--cCCCCCCCEEECCCCcCCccc------ccccccCEEECCCC
Confidence 776632 332 23589999998875 33 4552 678889999998833 33333 234789999998 7
Q ss_pred CceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccccee
Q 039042 362 DLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEI 441 (526)
Q Consensus 362 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 441 (526)
.+..++.. +++|+.|++++|. +..++. .+++|+.|+++++ .+..++. ..++|++|+++++ .+..+
T Consensus 268 ~l~~l~~~----~~~L~~L~ls~N~-l~~l~~---~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~l 332 (454)
T 1jl5_A 268 YLTDLPEL----PQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIEL 332 (454)
T ss_dssp CCSCCCCC----CTTCCEEECCSSC-CSEESC---CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCC
T ss_pred cccccCcc----cCcCCEEECcCCc-cCcccC---cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-ccccc
Confidence 77776432 4789999998874 444432 2368899999887 5555431 1258999999885 45555
Q ss_pred cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccc---cCCCCCCC--------
Q 039042 442 VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKG---FSRGELST-------- 510 (526)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~---l~~~~~~~-------- 510 (526)
+. .+++|++|+++++ .++.+|. .+++|++|++++|. +.. +|.....+
T Consensus 333 p~---------------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 333 PA---------------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CC---------------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC----
T ss_pred cc---------------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCChHHHHhhhhcccccc
Confidence 43 2589999999885 6777776 26899999999864 444 55554444
Q ss_pred -----cccceEEeccc
Q 039042 511 -----PVLHKVQLNRW 521 (526)
Q Consensus 511 -----~~L~~l~l~~~ 521 (526)
++|+.++++..
T Consensus 391 i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 391 VPELPQNLKQLHVETN 406 (454)
T ss_dssp ----------------
T ss_pred cccccCcCCEEECCCC
Confidence 77888887643
No 42
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=3.3e-22 Score=212.61 Aligned_cols=381 Identities=11% Similarity=0.003 Sum_probs=187.0
Q ss_pred cCCcccEEEEecCCCCCC-chhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042 74 GSSQLKFLGIHGCRDALN-PSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA 150 (526)
Q Consensus 74 ~l~~L~~L~L~~c~~~~~-p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~ 150 (526)
.+++|++|++++|..... +..+...+++|++ +.+|..+...... .....+++|++|++++|.+++.-......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~----~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA----AIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH----HHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH----HHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 578999999999874333 4443347888888 8877655432110 01113788999999988655321111111
Q ss_pred ccccCCcccEEEeccCC-CceecCCccccc-ccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccC
Q 039042 151 MTCGIQNLTHLTLYNCM-NLRCLFSSCTVS-NNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDL 228 (526)
Q Consensus 151 ~~~~l~~L~~L~L~~c~-~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 228 (526)
....+++|++|++++|. .+. +..+.. ...+++|++|++++|..+..++... ..+++|++|++..+
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~---~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~----------~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVS---FSALERLVTRCPNLKSLKLNRAVPLEKLATLL----------QRAPQLEELGTGGY 245 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCC---HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH----------HHCTTCSEEECSBC
T ss_pred HhhcCCcCcEEEecccCCcCC---HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH----------hcCCcceEcccccc
Confidence 02367889999998875 111 111110 1146889999998885554432221 45777888876544
Q ss_pred cc------ccccccCcccccCCCCccEE-EeccCCCceeccccccCCccccccCCcceEEEeeccccccceecccccccc
Q 039042 229 EK------LTSFCTGDVHMLEFPSLKEL-WISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCK 301 (526)
Q Consensus 229 ~~------l~~~~~~~~~~~~l~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 301 (526)
.. +..++.. +.++++|+.| .+.+.. ...++... ..+++|++|++++|.+.+.........+++
T Consensus 246 ~~~~~~~~~~~l~~~---l~~~~~L~~Ls~~~~~~-~~~l~~~~------~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 246 TAEVRPDVYSGLSVA---LSGCKELRCLSGFWDAV-PAYLPAVY------SVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315 (594)
T ss_dssp CCCCCHHHHHHHHHH---HHTCTTCCEEECCBTCC-GGGGGGGH------HHHTTCCEEECTTCCCCHHHHHHHHTTCTT
T ss_pred cCccchhhHHHHHHH---HhcCCCcccccCCcccc-hhhHHHHH------HhhCCCCEEEccCCCCCHHHHHHHHhcCCC
Confidence 21 1122221 4455555555 222211 11111110 245666666666554322100000124566
Q ss_pred ccEEEeeeCCcccccccchhHhhcCCCccEEEEe-e--------c-cccccCCCcCccccccceEEEec-cCceeecccc
Q 039042 302 LKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-G--------Y-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQE 370 (526)
Q Consensus 302 L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~--------~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~ 370 (526)
|++|++++| +. +.........+++|++|++. | . ........+ ...+++|++|.+. +.+.......
T Consensus 316 L~~L~l~~~--~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 316 LQRLWVLDY--IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp CCEEEEEGG--GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHH
T ss_pred cCEEeCcCc--cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHH
Confidence 666666665 22 01111123346666666663 1 1 000000000 0234666666555 4444432222
Q ss_pred cc-ccCcccEEEEe-----ccCCcccccC------CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccccc
Q 039042 371 SS-IMNNLVILHVT-----NCHRLINLVP------SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMI 438 (526)
Q Consensus 371 ~~-~l~~L~~L~l~-----~c~~l~~l~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 438 (526)
+. .+++|+.|+++ +|..+...+. ....+++|+.|++++ .+.+.........+++|+.|++++|..-
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 22 35677777776 4444443221 123456677777744 4444332233334667777777665421
Q ss_pred ceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCC
Q 039042 439 TEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTN 499 (526)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~ 499 (526)
...+... ...+++|++|++++|+. +..........+++|++|++++|+.
T Consensus 470 ~~~~~~l-----------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 470 DLGMHHV-----------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHH-----------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHH-----------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1111100 02356777777776653 3222111133456777777777653
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=3.2e-21 Score=204.98 Aligned_cols=412 Identities=12% Similarity=0.049 Sum_probs=251.9
Q ss_pred HHHHhccccccceeccccccccccc-ccccccccCCc-ccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhh
Q 039042 42 WLILQLQGIEDLELHELQEQDVNYF-ANELVRVGSSQ-LKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELIL 115 (526)
Q Consensus 42 ~~~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~-L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~ 115 (526)
++......+.+|+.++++++.+... +.++. ..+++ |++|++++|..... ......++++|++ +.+|..... .
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~ 180 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRMIVSDLDLDRLA-KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK-D 180 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC-C
T ss_pred HHHHHHhhCCCCCeEEeeccEecHHHHHHHH-HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc-c
Confidence 4555555777888888887654332 22211 12555 99999999984332 2233458899999 777742111 0
Q ss_pred cccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccc
Q 039042 116 EDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCH 195 (526)
Q Consensus 116 ~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~ 195 (526)
.. ........+++|++|++++|.++.+........+..+++|++|++.+|... .+ |..+. .+++|++|+++...
T Consensus 181 ~~-~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~---~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 181 GK-WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-EL-VGFFK---AAANLEEFCGGSLN 254 (592)
T ss_dssp SH-HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GG-HHHHH---HCTTCCEEEECBCC
T ss_pred hh-HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HH-HHHHh---hhhHHHhhcccccc
Confidence 00 000112247899999999997752211111111447899999999997543 33 54444 78999999998642
Q ss_pred cccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc-cccCCcccccc
Q 039042 196 VLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK-RTTNDLTKKVF 274 (526)
Q Consensus 196 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~l 274 (526)
...... .....+..+++|+.|.++++ ....++.. +..+++|++|++++|. +..... ... ..+
T Consensus 255 ~~~~~~-------~~~~~l~~~~~L~~L~l~~~-~~~~l~~~---~~~~~~L~~L~Ls~~~-l~~~~~~~~~-----~~~ 317 (592)
T 3ogk_B 255 EDIGMP-------EKYMNLVFPRKLCRLGLSYM-GPNEMPIL---FPFAAQIRKLDLLYAL-LETEDHCTLI-----QKC 317 (592)
T ss_dssp CCTTCT-------TSSSCCCCCTTCCEEEETTC-CTTTGGGG---GGGGGGCCEEEETTCC-CCHHHHHHHH-----TTC
T ss_pred cccchH-------HHHHHhhccccccccCcccc-chhHHHHH---HhhcCCCcEEecCCCc-CCHHHHHHHH-----HhC
Confidence 221100 00111367889999999874 33444444 6678999999999996 433221 111 468
Q ss_pred CCcceEEEeeccccc-cceeccccccccccEEEeee----------CCcccccccchhHhhcCCCccEEEEeec-ccccc
Q 039042 275 PNLEELIVDAEYIIT-NKFIFSEDLLCKLKCLDVEF----------VDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLP 342 (526)
Q Consensus 275 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~ 342 (526)
++|++|+++ +.+.+ .+.. ....+++|++|++++ |..+++ .........+++|++|.+.|+ .....
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~~ 394 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNES 394 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred cCCCEEecc-CccCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHHH
Confidence 999999998 32322 1111 113578999999995 776661 112223557999999999855 21111
Q ss_pred CCCcCccccccceEEEec-----cCceeec-----cccccccCcccEEEEeccCC-ccc-ccCCC-ccCCCcCEEEEccC
Q 039042 343 KEKVENGMEVIIRRVFRC-----YDLKYIL-----KQESSIMNNLVILHVTNCHR-LIN-LVPSS-TSFQNLTSLEISYC 409 (526)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~-----~~l~~~~-----~~~~~~l~~L~~L~l~~c~~-l~~-l~~~~-~~~~~L~~L~l~~c 409 (526)
...+ ...+++|++|++. +.+...+ ...+..+++|+.|+++.|.. +.. ....+ ..+++|+.|++++|
T Consensus 395 ~~~l-~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 395 LESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHH-HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHH-HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 0000 0336889999994 4454431 12245589999999988764 221 11111 34789999999988
Q ss_pred CCcccccchHHHhhcccccEEEEcccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCC
Q 039042 410 NGLKNVLTFSIAKTLVRLREMKIESCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPS 488 (526)
Q Consensus 410 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 488 (526)
++++......+..+++|++|++++|. +... +.. ....+++|++|++++|+ ++..........+|.
T Consensus 474 -~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-----------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 474 -GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-----------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY 539 (592)
T ss_dssp -CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH-----------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT
T ss_pred -CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH-----------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC
Confidence 46654434567789999999999987 4321 111 12257999999999987 665544433446788
Q ss_pred ccEEeEec
Q 039042 489 LERLLVDD 496 (526)
Q Consensus 489 L~~L~l~~ 496 (526)
++...+..
T Consensus 540 l~~~~~~~ 547 (592)
T 3ogk_B 540 WNIELIPS 547 (592)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 77776654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=2.3e-19 Score=176.35 Aligned_cols=297 Identities=13% Similarity=0.033 Sum_probs=162.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
..+++.+++++++++.+ |.+ -.++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++...
T Consensus 32 ~c~l~~l~~~~~~l~~i----p~~---~~~~l~~L~l~~n~-i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~-- 97 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAV----PKE---ISPDTTLLDLQNND-ISELRKDDFK---GLQHLYALVLVNN-KISKIHEKA-- 97 (332)
T ss_dssp EEETTEEECCSSCCSSC----CSC---CCTTCCEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECGGG--
T ss_pred cccCCEEECCCCCcccc----CCC---CCCCCeEEECCCCc-CCccCHhHhh---CCCCCcEEECCCC-ccCccCHhH--
Confidence 34677777777777655 433 34678888888764 4555454444 6778888888777 455542221
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++.. + +++|++|+++++ .+..++...+ ..+++|++|++++|.
T Consensus 98 -------~~~l~~L~~L~L~~n-~l~~l~~~---~--~~~L~~L~l~~n-~i~~~~~~~~-----~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 98 -------FSPLRKLQKLYISKN-HLVEIPPN---L--PSSLVELRIHDN-RIRKVPKGVF-----SGLRNMNCIEMGGNP 158 (332)
T ss_dssp -------STTCTTCCEEECCSS-CCCSCCSS---C--CTTCCEEECCSS-CCCCCCSGGG-----SSCSSCCEEECCSCC
T ss_pred -------hhCcCCCCEEECCCC-cCCccCcc---c--cccCCEEECCCC-ccCccCHhHh-----CCCccCCEEECCCCc
Confidence 156777888887764 45666555 2 267777777776 4555554322 256667777766554
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+.. .. .....+..+ +|+.|+++ +....+|.. ..++|++|++. +.+.
T Consensus 159 l~~-~~-------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 159 LEN-SG-------------------------FEPGAFDGL-KLNYLRISEAKLTGIPKD-----LPETLNELHLDHNKIQ 206 (332)
T ss_dssp CBG-GG-------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SCSSCSCCBCCSSCCC
T ss_pred ccc-CC-------------------------CCcccccCC-ccCEEECcCCCCCccCcc-----ccCCCCEEECCCCcCC
Confidence 421 00 111112222 44444444 112222211 12456666666 6666
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceeccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLA 444 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 444 (526)
.+.+..+..+++|+.|+++++..-...+..+..+++|+.|+++++ +++.+| ..+..+++|+.|+++++ .+..++..
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECCSS-CCCBCCTT
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECCCC-CCCccChh
Confidence 666566667777777777776432222224556677777777776 566555 33566777777777774 35544432
Q ss_pred ccCCcccccCCCeeeeCccCeEecCCCcccc-ccCCCCccccCCCccEEeEecCC
Q 039042 445 DDDDDHDAAKDEVIAFSELNELKLLNLKSLR-SFYSGNRALNFPSLERLLVDDCT 498 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~L~~L~l~~C~ 498 (526)
..... .....+++|+.|++.+++... .++.. .+..+++|+.++++++.
T Consensus 283 ~~~~~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPV-----GFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCS-----SCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC----
T ss_pred Hcccc-----ccccccccccceEeecCcccccccCcc-cccccchhhhhhccccc
Confidence 21100 000124567777777755321 22222 24556777777776653
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=4.8e-18 Score=166.73 Aligned_cols=184 Identities=10% Similarity=-0.030 Sum_probs=98.5
Q ss_pred ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccC
Q 039042 298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMN 375 (526)
Q Consensus 298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~ 375 (526)
.+++|++|+++++..-. .......+..+++|++|++. +....++.. ..++|++|++. +.+..+.+..+..++
T Consensus 143 ~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITTIPQG-----LPPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp TCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred CCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCccccCCcc-----ccccCCEEECCCCcCCccCHHHhcCCC
Confidence 34455555555543321 01222355667777777776 323333322 22677777777 777777667777777
Q ss_pred cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCC
Q 039042 376 NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKD 455 (526)
Q Consensus 376 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 455 (526)
+|+.|+++++..-...+..+..+++|++|+++++ .+..++ ..+..+++|++|+++++. +..++....... .
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~ 287 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP--GGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----G 287 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC--TTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----S
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC--hhhccCCCcCEEECCCCc-CCccChhhcCCc-----c
Confidence 8888888776433322234566777777777776 556555 345566777777777743 554443321100 0
Q ss_pred CeeeeCccCeEecCCCcccc-ccCCCCccccCCCccEEeEecC
Q 039042 456 EVIAFSELNELKLLNLKSLR-SFYSGNRALNFPSLERLLVDDC 497 (526)
Q Consensus 456 ~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~~~L~~L~l~~C 497 (526)
.....++|+.|++.+++... .++.. .+..+++++.++++++
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC---
T ss_pred cccccccccceEeecCcccccccCcc-ccccccceeEEEeccc
Confidence 00123566677776654211 12222 2445566666666553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.7e-18 Score=169.88 Aligned_cols=272 Identities=14% Similarity=0.095 Sum_probs=163.1
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.+.|++|++++|.++.+... . +..+++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++..
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~---~-~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~l~~~--- 118 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDG---D-FKNLKNLHTLILINNK-ISKISPGAFA---PLVKLERLYLSKN-QLKELPEK--- 118 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTT---T-TTTCTTCCEEECCSSC-CCCBCTTTTT---TCTTCCEEECCSS-CCSBCCSS---
T ss_pred CCCCeEEECCCCcCCEeChh---h-hccCCCCCEEECCCCc-CCeeCHHHhc---CCCCCCEEECCCC-cCCccChh---
Confidence 46788888888877765221 1 5578889999998864 4555566655 7888999999887 56655542
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCcee--ccccccCCccccccCCcceEEEee
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~l~~ 284 (526)
.+++|++|+++++ .+..++... +..+++|++|+++++. +.. .....+ ..+++|+.|++++
T Consensus 119 ---------~~~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~-----~~l~~L~~L~l~~ 180 (330)
T 1xku_A 119 ---------MPKTLQELRVHEN-EITKVRKSV--FNGLNQMIVVELGTNP-LKSSGIENGAF-----QGMKKLSYIRIAD 180 (330)
T ss_dssp ---------CCTTCCEEECCSS-CCCBBCHHH--HTTCTTCCEEECCSSC-CCGGGBCTTGG-----GGCTTCCEEECCS
T ss_pred ---------hcccccEEECCCC-cccccCHhH--hcCCccccEEECCCCc-CCccCcChhhc-----cCCCCcCEEECCC
Confidence 3478888888874 455554332 5678888888888873 332 211111 3578888888887
Q ss_pred ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCce
Q 039042 285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLK 364 (526)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~ 364 (526)
+.+. .+|...+++|++|++++|..-. ++...+..+++|++|+++. +.+.
T Consensus 181 n~l~----~l~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~------------------------n~l~ 229 (330)
T 1xku_A 181 TNIT----TIPQGLPPSLTELHLDGNKITK---VDAASLKGLNNLAKLGLSF------------------------NSIS 229 (330)
T ss_dssp SCCC----SCCSSCCTTCSEEECTTSCCCE---ECTGGGTTCTTCCEEECCS------------------------SCCC
T ss_pred Cccc----cCCccccccCCEEECCCCcCCc---cCHHHhcCCCCCCEEECCC------------------------CcCc
Confidence 6553 3555555777888777765322 2233445555555555542 4444
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHH-----hhcccccEEEEccccccc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIA-----KTLVRLREMKIESCAMIT 439 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~l~~L~~L~i~~c~~l~ 439 (526)
.+.+..+..+++|+.|++++| .+..+|..+..+++|++|+++++ .++.++...+. ...+.|+.+++.+++ +.
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~ 306 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQ 306 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred eeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-cc
Confidence 444445556667777777766 34456666666777777777765 45555432221 124677777777754 22
Q ss_pred eecccccCCcccccCCCeeeeCccCeEecCCC
Q 039042 440 EIVLADDDDDHDAAKDEVIAFSELNELKLLNL 471 (526)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 471 (526)
...... ..+..+++++.++++++
T Consensus 307 ~~~i~~---------~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 307 YWEIQP---------STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGSCG---------GGGTTCCCGGGEEC---
T ss_pred ccccCc---------cccccccceeEEEeccc
Confidence 110000 12335677777777664
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=7.8e-19 Score=172.48 Aligned_cols=266 Identities=15% Similarity=0.123 Sum_probs=166.4
Q ss_pred CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042 76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI 155 (526)
Q Consensus 76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l 155 (526)
.+++.++++++.....|... .++|++|++++|.++.+.. .. +..+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-------------------------------~~~l~~L~l~~n~i~~~~~---~~-~~~l 77 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-------------------------------SPDTTLLDLQNNDISELRK---DD-FKGL 77 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-------------------------------CTTCCEEECCSSCCCEECT---TT-TTTC
T ss_pred ccCCEEECCCCCccccCCCC-------------------------------CCCCeEEECCCCcCCccCH---hH-hhCC
Confidence 46888888887655445432 5688999999998776522 12 5689
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++.. .+++|++|+++++ .+..++
T Consensus 78 ~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~n-~l~~l~~~------------~~~~L~~L~l~~n-~i~~~~ 139 (332)
T 2ft3_A 78 QHLYALVLVNNK-ISKIHEKAFS---PLRKLQKLYISKN-HLVEIPPN------------LPSSLVELRIHDN-RIRKVP 139 (332)
T ss_dssp TTCCEEECCSSC-CCEECGGGST---TCTTCCEEECCSS-CCCSCCSS------------CCTTCCEEECCSS-CCCCCC
T ss_pred CCCcEEECCCCc-cCccCHhHhh---CcCCCCEEECCCC-cCCccCcc------------ccccCCEEECCCC-ccCccC
Confidence 999999999974 5555566655 7999999999998 56666543 3488999999975 566665
Q ss_pred cCcccccCCCCccEEEeccCCCcee--ccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL 313 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 313 (526)
... +..+++|++|+++++ .++. ..+..+ ..+ +|+.|+++++.+. .+|...+++|++|+++++...
T Consensus 140 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~-----~~l-~L~~L~l~~n~l~----~l~~~~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 140 KGV--FSGLRNMNCIEMGGN-PLENSGFEPGAF-----DGL-KLNYLRISEAKLT----GIPKDLPETLNELHLDHNKIQ 206 (332)
T ss_dssp SGG--GSSCSSCCEEECCSC-CCBGGGSCTTSS-----CSC-CCSCCBCCSSBCS----SCCSSSCSSCSCCBCCSSCCC
T ss_pred HhH--hCCCccCCEEECCCC-ccccCCCCcccc-----cCC-ccCEEECcCCCCC----ccCccccCCCCEEECCCCcCC
Confidence 542 678999999999988 4432 222221 233 8999999977663 356555678888888876543
Q ss_pred cccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccC
Q 039042 314 TTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVP 393 (526)
Q Consensus 314 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 393 (526)
. ++...+..+++|++|+++. +.+..+.+..+..+++|+.|++++| .+..+|.
T Consensus 207 ~---~~~~~l~~l~~L~~L~L~~------------------------N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 207 A---IELEDLLRYSKLYRLGLGH------------------------NQIRMIENGSLSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp C---CCTTSSTTCTTCSCCBCCS------------------------SCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred c---cCHHHhcCCCCCCEEECCC------------------------CcCCcCChhHhhCCCCCCEEECCCC-cCeecCh
Confidence 2 3333455566666666652 3333333334444555555555554 2334444
Q ss_pred CCccCCCcCEEEEccCCCcccccchHHHh-----hcccccEEEEcccc
Q 039042 394 SSTSFQNLTSLEISYCNGLKNVLTFSIAK-----TLVRLREMKIESCA 436 (526)
Q Consensus 394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-----~l~~L~~L~i~~c~ 436 (526)
.+..+++|+.|+++++ .++.++...+.. ..++|+.|++.+++
T Consensus 259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 4555555555555554 344443221111 13456666666644
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.4e-18 Score=168.50 Aligned_cols=228 Identities=17% Similarity=0.149 Sum_probs=117.6
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
..+++.|++++|+++.+ |.+ +..+++|++|++++|.. +. .|..+. .+++|++|++++| .+..+|..+
T Consensus 80 ~~~l~~L~L~~n~l~~l----p~~-l~~l~~L~~L~L~~n~l-~~-lp~~~~---~l~~L~~L~Ls~n-~l~~lp~~l-- 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF----PDQ-AFRLSHLQHMTIDAAGL-ME-LPDTMQ---QFAGLETLTLARN-PLRALPASI-- 146 (328)
T ss_dssp STTCCEEEEESSCCSSC----CSC-GGGGTTCSEEEEESSCC-CC-CCSCGG---GGTTCSEEEEESC-CCCCCCGGG--
T ss_pred ccceeEEEccCCCchhc----Chh-hhhCCCCCEEECCCCCc-cc-hhHHHh---ccCCCCEEECCCC-ccccCcHHH--
Confidence 35566666666666544 333 44566666666666543 23 344443 5666666666666 344444332
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
..+++|++|++++|.....+|.. +.. ..+. ..+ ..+++|++|++++|.
T Consensus 147 --------~~l~~L~~L~L~~n~~~~~~p~~---~~~------~~~~---------~~~------~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 147 --------ASLNRLRELSIRACPELTELPEP---LAS------TDAS---------GEH------QGLVNLQSLRLEWTG 194 (328)
T ss_dssp --------GGCTTCCEEEEEEETTCCCCCSC---SEE------EC-C---------CCE------EESTTCCEEEEEEEC
T ss_pred --------hcCcCCCEEECCCCCCccccChh---Hhh------ccch---------hhh------ccCCCCCEEECcCCC
Confidence 45666666666665555444433 111 0000 000 135555566555554
Q ss_pred ccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEeccCc
Q 039042 287 IITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRCYDL 363 (526)
Q Consensus 287 ~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~~l 363 (526)
+. .+|. ..+++|++|++++|.... +|. .+..+++|++|+++ |. +
T Consensus 195 l~----~lp~~l~~l~~L~~L~L~~N~l~~---l~~-~l~~l~~L~~L~Ls~n~-------------------------~ 241 (328)
T 4fcg_A 195 IR----SLPASIANLQNLKSLKIRNSPLSA---LGP-AIHHLPKLEELDLRGCT-------------------------A 241 (328)
T ss_dssp CC----CCCGGGGGCTTCCEEEEESSCCCC---CCG-GGGGCTTCCEEECTTCT-------------------------T
T ss_pred cC----cchHhhcCCCCCCEEEccCCCCCc---Cch-hhccCCCCCEEECcCCc-------------------------c
Confidence 42 1222 245566666666654322 332 24445555555554 22 1
Q ss_pred eeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 364 KYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
....+..+..+++|+.|++++|.....+|..+..+++|++|++++|+.+..+| ..+..+++|+.+++..
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVPP 310 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECCG
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCCH
Confidence 11112334445666666666666666666566666666666666666555555 4555666666666654
No 49
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.5e-20 Score=198.12 Aligned_cols=414 Identities=14% Similarity=0.059 Sum_probs=232.1
Q ss_pred HHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCC--chhhhhhccCccc--ccccccchhhhcc
Q 039042 42 WLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALN--PSAESKRQRQEES--ANDMQSNELILED 117 (526)
Q Consensus 42 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~--p~~~l~~l~~L~~--i~~~~~l~~~~~~ 117 (526)
++........+|+.++++++.+....-......+++|++|++++|..... ......++++|++ +.+|. +......
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~ 174 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGH 174 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGG
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchH
Confidence 44555566778888888876543322111122589999999999965544 4445668999999 77775 2221100
Q ss_pred cccccchhhhhhhhhhcccccc--cccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccc
Q 039042 118 NANISNTLFLEKLEKLELRSIN--IERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCH 195 (526)
Q Consensus 118 ~~~~~~~~~l~~L~~L~L~~~~--l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~ 195 (526)
. .......+++|++|++++|. +.... ....+..+++|++|++++|..+..+ |..+. .+++|++|++..+.
T Consensus 175 ~-l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~---~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 175 W-LSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVPLEKL-ATLLQ---RAPQLEELGTGGYT 246 (594)
T ss_dssp G-GGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSCHHHH-HHHHH---HCTTCSEEECSBCC
T ss_pred H-HHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCcHHHH-HHHHh---cCCcceEccccccc
Confidence 0 00111137799999999985 32111 1110235799999999999777664 54444 78999999987763
Q ss_pred cccEEEeecchhhhccccccccccccee-ecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCcccccc
Q 039042 196 VLEELIVVDNQEEERKNNIVMFPQLQYL-KMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVF 274 (526)
Q Consensus 196 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l 274 (526)
. . +.. .........+..+++|+.| .+.+.. ...++.. ...+++|++|++++|. +....... +...+
T Consensus 247 ~-~-~~~--~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~---~~~~~~L~~L~L~~~~-l~~~~l~~----~~~~~ 313 (594)
T 2p1m_B 247 A-E-VRP--DVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAV---YSVCSRLTTLNLSYAT-VQSYDLVK----LLCQC 313 (594)
T ss_dssp C-C-CCH--HHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGG---HHHHTTCCEEECTTCC-CCHHHHHH----HHTTC
T ss_pred C-c-cch--hhHHHHHHHHhcCCCcccccCCcccc-hhhHHHH---HHhhCCCCEEEccCCC-CCHHHHHH----HHhcC
Confidence 2 0 000 0000111123567778777 343321 1223222 3467888888888885 44321110 01367
Q ss_pred CCcceEEEeeccccc-cceeccccccccccEEEeee--------CCcccccccchhHhhcCCCccEEEEeec-cccccCC
Q 039042 275 PNLEELIVDAEYIIT-NKFIFSEDLLCKLKCLDVEF--------VDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKE 344 (526)
Q Consensus 275 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~--------~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~ 344 (526)
++|++|+++++ +.+ .+..+ ...+++|++|++.. |..++ .........++++|++|.+.|+ .......
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVL-ASTCKDLRELRVFPSEPFVMEPNVALT-EQGLVSVSMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHH-HHHCTTCCEEEEECSCTTCSSCSSCCC-HHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHH-HHhCCCCCEEEEecCcccccccCCCCC-HHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence 88888888866 321 11111 12467888888843 34444 1111122345888888876654 2111101
Q ss_pred CcCccccccceEEEec-------cCceeecc-c----cccccCcccEEEEeccCCccc-ccCCCc-cCCCcCEEEEccCC
Q 039042 345 KVENGMEVIIRRVFRC-------YDLKYILK-Q----ESSIMNNLVILHVTNCHRLIN-LVPSST-SFQNLTSLEISYCN 410 (526)
Q Consensus 345 ~~~~~~~~~L~~L~l~-------~~l~~~~~-~----~~~~l~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~c~ 410 (526)
.+ ...+++|+.|++. +.+...+. . .+..+++|+.|++++ .+.. ....+. .+++|+.|++++|.
T Consensus 391 ~l-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 391 TI-ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HH-HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HH-HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC
Confidence 00 0246788888887 23332211 1 144578899999966 3321 111222 37889999998884
Q ss_pred CcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCcc
Q 039042 411 GLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLE 490 (526)
Q Consensus 411 ~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~ 490 (526)
+++......+..+++|++|++++|..-...+.. ....+++|++|++++|+. ..-........+|.|+
T Consensus 468 -i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~-----------~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 468 -DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA-----------NASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp -SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH-----------TGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEE
T ss_pred -CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH-----------HHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCE
Confidence 555433344567899999999998742111111 112468999999999865 2211111123467776
Q ss_pred EEeEec
Q 039042 491 RLLVDD 496 (526)
Q Consensus 491 ~L~l~~ 496 (526)
...+..
T Consensus 535 i~~~~~ 540 (594)
T 2p1m_B 535 VEVIDE 540 (594)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 655554
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=2.4e-17 Score=161.30 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=57.7
Q ss_pred ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042 182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR 261 (526)
Q Consensus 182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 261 (526)
...++++|+++++ .+..++... ..+++|++|+++++ .+..+|.. ++.+++|++|++++| .+..+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l----------~~l~~L~~L~L~~n-~l~~lp~~---~~~l~~L~~L~Ls~n-~l~~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQA----------FRLSHLQHMTIDAA-GLMELPDT---MQQFAGLETLTLARN-PLRAL 142 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCG----------GGGTTCSEEEEESS-CCCCCCSC---GGGGTTCSEEEEESC-CCCCC
T ss_pred cccceeEEEccCC-CchhcChhh----------hhCCCCCEEECCCC-CccchhHH---HhccCCCCEEECCCC-ccccC
Confidence 3477888888887 566665543 56788888888874 45566655 677888888888877 55566
Q ss_pred cccccCCccccccCCcceEEEeeccc
Q 039042 262 FKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 262 ~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
|..+ ..+++|++|++++|.+
T Consensus 143 p~~l------~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 143 PASI------ASLNRLRELSIRACPE 162 (328)
T ss_dssp CGGG------GGCTTCCEEEEEEETT
T ss_pred cHHH------hcCcCCCEEECCCCCC
Confidence 5554 4567777777776533
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=5.2e-18 Score=164.99 Aligned_cols=246 Identities=11% Similarity=0.057 Sum_probs=151.6
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE 207 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 207 (526)
.+++.|+++++++...+. .|.. +..+++|++|++++++.+....|..+. .+++|++|++++|.....++..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~~--- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSS-LANLPYLNFLYIGGINNLVGPIPPAIA---KLTQLHYLYITHTNVSGAIPDFL--- 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGG-GGGCTTCSEEEEEEETTEESCCCGGGG---GCTTCSEEEEEEECCEEECCGGG---
T ss_pred ceEEEEECCCCCccCCcc-cChh-HhCCCCCCeeeCCCCCcccccCChhHh---cCCCCCEEECcCCeeCCcCCHHH---
Confidence 578899999997774110 1333 678999999999964555544576665 79999999999984333554443
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccC-CcceEEEeec
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFP-NLEELIVDAE 285 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~-~L~~L~l~~~ 285 (526)
..+++|++|+++++.--..++.. +..+++|++|++++| .+. .+|..+ ..++ +|+.|++++|
T Consensus 122 -------~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N-~l~~~~p~~l------~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 122 -------SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGN-RISGAIPDSY------GSFSKLFTSMTISRN 184 (313)
T ss_dssp -------GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSS-CCEEECCGGG------GCCCTTCCEEECCSS
T ss_pred -------hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCC-cccCcCCHHH------hhhhhcCcEEECcCC
Confidence 67899999999986432245554 778999999999998 455 555554 3455 8999999877
Q ss_pred cccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec--cccccCCCcCccccccceEEEec-
Q 039042 286 YIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY--SDWLPKEKVENGMEVIIRRVFRC- 360 (526)
Q Consensus 286 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~- 360 (526)
.+.. ..|. ..++ |++|++++|.... .+...+..+++|+.|+++.+ ....+. ...+++|++|++.
T Consensus 185 ~l~~---~~~~~~~~l~-L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 185 RLTG---KIPPTFANLN-LAFVDLSRNMLEG---DASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRN 253 (313)
T ss_dssp EEEE---ECCGGGGGCC-CSEEECCSSEEEE---CCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCS
T ss_pred eeec---cCChHHhCCc-ccEEECcCCcccC---cCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcC
Confidence 6642 2222 1233 8888888765433 23335667777777777732 212221 1334555555555
Q ss_pred cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCC
Q 039042 361 YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCN 410 (526)
Q Consensus 361 ~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 410 (526)
+.+....+..+..+++|+.|++++|.....+|. ...+++|+.+++.+++
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCC
Confidence 555544444555555555555555533333332 2444455555554443
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=4.1e-18 Score=166.16 Aligned_cols=243 Identities=12% Similarity=0.101 Sum_probs=137.5
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++. + ..+++|++|+++++ .++.
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~-~----------~~l~~L~~L~Ls~n-~l~~ 94 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLA---PFTKLELLNLSSN-VLYETLD-L----------ESLSTLRTLDLNNN-YVQE 94 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHT---TCTTCCEEECTTS-CCEEEEE-E----------TTCTTCCEEECCSS-EEEE
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhh---CCCcCCEEECCCC-cCCcchh-h----------hhcCCCCEEECcCC-cccc
Confidence 35566666666653 3333333333 5666666666666 3333322 1 45666666666654 3333
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL 313 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 313 (526)
++ ..++|++|++++| .+..++.. .+++|++|++++|.+.. +.......+++|++|++++|...
T Consensus 95 l~-------~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 95 LL-------VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EE-------ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCC
T ss_pred cc-------CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCC
Confidence 32 2366666666666 34444332 35566666666555421 11122234566777777765433
Q ss_pred cccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccc
Q 039042 314 TTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINL 391 (526)
Q Consensus 314 ~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l 391 (526)
. ..+......+++|++|+++ +....++.. ..+++|++|+++ +.+..+++. +..+++|+.|++++| .+..+
T Consensus 158 ~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~l 229 (317)
T 3o53_A 158 T--VNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLI 229 (317)
T ss_dssp E--EEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEE
T ss_pred c--ccHHHHhhccCcCCEEECCCCcCcccccc----cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccch
Confidence 3 2233333467777777777 333222222 235778888887 777777554 667788888888877 45566
Q ss_pred cCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccc
Q 039042 392 VPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMIT 439 (526)
Q Consensus 392 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~ 439 (526)
|..+..+++|+.|++++++ +.....+.++..+++|+.+++.++..+.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhcc
Confidence 6666777788888887764 3311222456666777777776655444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.6e-17 Score=161.25 Aligned_cols=181 Identities=17% Similarity=0.153 Sum_probs=126.4
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.++|++|++++|+++.+... . +..+++|++|++++| .++.+.|..+. .+++|++|++++| .+..++...
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~---~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~-- 119 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNS---D-LQRCVNLQALVLTSN-GINTIEEDSFS---SLGSLEHLDLSYN-YLSNLSSSW-- 119 (353)
T ss_dssp CTTCCEEECTTSCCCEECTT---T-TTTCTTCCEEECTTS-CCCEECTTTTT---TCTTCCEEECCSS-CCSSCCHHH--
T ss_pred cccCcEEECCCCcCcccCHH---H-hccCCCCCEEECCCC-ccCccCHhhcC---CCCCCCEEECCCC-cCCcCCHhH--
Confidence 45788888888877765221 1 557888999999887 45555565555 7889999999888 565554431
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++.. ..+..+++|++|++++|..+..+++..+ ..+++|++|++++|.
T Consensus 120 -------~~~l~~L~~L~L~~n-~l~~l~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 120 -------FKPLSSLTFLNLLGN-PYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASD 185 (353)
T ss_dssp -------HTTCTTCSEEECTTC-CCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETT
T ss_pred -------hCCCccCCEEECCCC-CCcccCch-hhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCC
Confidence 156888999999874 56666651 1266789999999998866777665433 367889999998876
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEee
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEG 336 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~ 336 (526)
+.. +..-....+++|++|+++++.. + .++...+..+++|+.|+++.
T Consensus 186 l~~-~~~~~l~~l~~L~~L~l~~n~l-~--~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 186 LQS-YEPKSLKSIQNVSHLILHMKQH-I--LLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp CCE-ECTTTTTTCSEEEEEEEECSCS-T--THHHHHHHHTTTEEEEEEES
T ss_pred cCc-cCHHHHhccccCCeecCCCCcc-c--cchhhhhhhcccccEEECCC
Confidence 632 1111223567899999988764 4 45666667788999998883
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.1e-16 Score=168.88 Aligned_cols=254 Identities=18% Similarity=0.075 Sum_probs=163.3
Q ss_pred CcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhhhcccccccccccccccccccccC
Q 039042 76 SQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGI 155 (526)
Q Consensus 76 ~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l 155 (526)
.++++|+++++.....|..+ .++|++|++++|.++.+ |. .+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l-------------------------------~~~L~~L~L~~N~l~~l----p~----~l 80 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL-------------------------------PAHITTLVIPDNNLTSL----PA----LP 80 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC-------------------------------CTTCSEEEECSCCCSCC----CC----CC
T ss_pred CCCcEEEecCCCcCccChhh-------------------------------CCCCcEEEecCCCCCCC----CC----cC
Confidence 46889999888766545532 45778888888877755 21 46
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
++|++|++++|. ++.+ |. .+++|++|++++| .+..++. .+++|++|+++++ .+..++
T Consensus 81 ~~L~~L~Ls~N~-l~~l-p~------~l~~L~~L~Ls~N-~l~~l~~-------------~l~~L~~L~L~~N-~l~~lp 137 (622)
T 3g06_A 81 PELRTLEVSGNQ-LTSL-PV------LPPGLLELSIFSN-PLTHLPA-------------LPSGLCKLWIFGN-QLTSLP 137 (622)
T ss_dssp TTCCEEEECSCC-CSCC-CC------CCTTCCEEEECSC-CCCCCCC-------------CCTTCCEEECCSS-CCSCCC
T ss_pred CCCCEEEcCCCc-CCcC-CC------CCCCCCEEECcCC-cCCCCCC-------------CCCCcCEEECCCC-CCCcCC
Confidence 778888888764 4443 43 4677888888877 4555432 3667888888764 566665
Q ss_pred cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccc
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTT 315 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 315 (526)
.. +++|++|++++| .+..++ ..+++|+.|++++|.+. .+| ..+++|+.|++++|.. +
T Consensus 138 ~~------l~~L~~L~Ls~N-~l~~l~---------~~~~~L~~L~L~~N~l~----~l~-~~~~~L~~L~Ls~N~l-~- 194 (622)
T 3g06_A 138 VL------PPGLQELSVSDN-QLASLP---------ALPSELCKLWAYNNQLT----SLP-MLPSGLQELSVSDNQL-A- 194 (622)
T ss_dssp CC------CTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCCS----CCC-CCCTTCCEEECCSSCC-S-
T ss_pred CC------CCCCCEEECcCC-cCCCcC---------CccCCCCEEECCCCCCC----CCc-ccCCCCcEEECCCCCC-C-
Confidence 43 477888888877 555544 23567788888766553 244 4567788888877653 3
Q ss_pred cccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC
Q 039042 316 ILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP 393 (526)
Q Consensus 316 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 393 (526)
.+|. .+++|+.|.+..+ ...++ ..+++|++|+++ +.+..++ ..+++|+.|++++| .+..+|.
T Consensus 195 -~l~~----~~~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~ 258 (622)
T 3g06_A 195 -SLPT----LPSELYKLWAYNNRLTSLP------ALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGN-RLTSLPM 258 (622)
T ss_dssp -CCCC----CCTTCCEEECCSSCCSSCC------CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC
T ss_pred -CCCC----ccchhhEEECcCCcccccC------CCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCC-CCCcCCc
Confidence 2332 2467777777733 33333 223677777777 6666654 33467777777776 4555544
Q ss_pred CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042 394 SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 394 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 436 (526)
.+++|+.|++++| +++.+| ..+..+++|+.|++++++
T Consensus 259 ---~~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 ---LPSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp ---CCTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCC
T ss_pred ---ccccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCC
Confidence 5567777777776 566655 345677777777777755
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.5e-16 Score=163.02 Aligned_cols=225 Identities=15% Similarity=0.053 Sum_probs=150.4
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.+++++|+|++|+++.+.. .. +..+++|++|++++| .++.+.|..+. ++++|++|++++| .+..++...
T Consensus 74 ~~~l~~L~L~~n~i~~~~~---~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~-- 142 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQA---DT-FRHLHHLEVLQLGRN-SIRQIEVGAFN---GLASLNTLELFDN-WLTVIPSGA-- 142 (452)
T ss_dssp CTTCSEEECCSSCCCEECT---TT-TTTCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCSBCCTTT--
T ss_pred CCCccEEECcCCcCceECH---HH-cCCCCCCCEEECCCC-ccCCcChhhcc---CcccCCEEECCCC-cCCccChhh--
Confidence 4678888888887775522 12 557888999999886 45555555554 7888999999888 566555432
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++|..+..++...+ ..+++|+.|++++|.
T Consensus 143 -------~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 143 -------FEYLSKLRELWLRNN-PIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF-----EGLFNLKYLNLGMCN 207 (452)
T ss_dssp -------SSSCTTCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCTTCCEEECTTSC
T ss_pred -------hcccCCCCEEECCCC-CcceeCHhH--HhcCCcccEEeCCCCCCccccChhhc-----cCCCCCCEEECCCCc
Confidence 156888999998874 566666543 66788899999988878887776543 367888888888776
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
+.. +. ....+++|++|++++|.... ++...+..+++|+.|++..+ ...++...+ ..+++|+.|++. +.+.
T Consensus 208 l~~-~~--~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 208 IKD-MP--NLTPLVGLEELEMSGNHFPE---IRPGSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLS 279 (452)
T ss_dssp CSS-CC--CCTTCTTCCEEECTTSCCSE---ECGGGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCS
T ss_pred ccc-cc--cccccccccEEECcCCcCcc---cCcccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCC
Confidence 632 11 12356788888888765433 33446677777777777733 333332322 445666666666 6666
Q ss_pred eeccccccccCcccEEEEecc
Q 039042 365 YILKQESSIMNNLVILHVTNC 385 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c 385 (526)
.+++..+..+++|+.|+++++
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSS
T ss_pred ccChHHhccccCCCEEEccCC
Confidence 666666666666666666654
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=1.5e-16 Score=154.60 Aligned_cols=249 Identities=14% Similarity=0.075 Sum_probs=131.1
Q ss_pred CcccEEEeccCCCce--ecCCcccccccccccccEEeeec-cccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042 156 QNLTHLTLYNCMNLR--CLFSSCTVSNNSFVRLQYIRIEK-CHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT 232 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~--~l~p~~l~~l~~l~~L~~L~l~~-~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 232 (526)
.+++.|+++++.... . .|..+. .+++|++|++++ +.....+|..+ ..+++|++|+++++ .+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~---~l~~L~~L~L~~~n~l~~~~p~~l----------~~l~~L~~L~Ls~n-~l~ 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLA---NLPYLNFLYIGGINNLVGPIPPAI----------AKLTQLHYLYITHT-NVS 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGG---GCTTCSEEEEEEETTEESCCCGGG----------GGCTTCSEEEEEEE-CCE
T ss_pred ceEEEEECCCCCccCCcc-cChhHh---CCCCCCeeeCCCCCcccccCChhH----------hcCCCCCEEECcCC-eeC
Confidence 567777777764332 2 354444 677777777774 42222333332 56677777777764 333
Q ss_pred -ccccCcccccCCCCccEEEeccCCCce-eccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeC
Q 039042 233 -SFCTGDVHMLEFPSLKELWISRCPEFM-VRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFV 310 (526)
Q Consensus 233 -~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (526)
.+|.. +..+++|++|++++| .+. .+|..+ ..+++|++|++++|.+..
T Consensus 115 ~~~p~~---~~~l~~L~~L~Ls~N-~l~~~~p~~~------~~l~~L~~L~L~~N~l~~--------------------- 163 (313)
T 1ogq_A 115 GAIPDF---LSQIKTLVTLDFSYN-ALSGTLPPSI------SSLPNLVGITFDGNRISG--------------------- 163 (313)
T ss_dssp EECCGG---GGGCTTCCEEECCSS-EEESCCCGGG------GGCTTCCEEECCSSCCEE---------------------
T ss_pred CcCCHH---HhCCCCCCEEeCCCC-ccCCcCChHH------hcCCCCCeEECcCCcccC---------------------
Confidence 34433 556677777777766 343 233333 345666666666554421
Q ss_pred CcccccccchhHhhcCC-CccEEEEeec--cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccC
Q 039042 311 DELTTILSLDDFLQRFP-TLKVLQIEGY--SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCH 386 (526)
Q Consensus 311 ~~l~~~~~~~~~l~~l~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~ 386 (526)
.+|. .+..++ +|+.|+++.+ .+..+.. + ..++ |++|+++ +.+....+..+..+++|+.|+++++.
T Consensus 164 ------~~p~-~l~~l~~~L~~L~L~~N~l~~~~~~~-~--~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 164 ------AIPD-SYGSFSKLFTSMTISRNRLTGKIPPT-F--ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ------ECCG-GGGCCCTTCCEEECCSSEEEEECCGG-G--GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ------cCCH-HHhhhhhcCcEEECcCCeeeccCChH-H--hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 1222 222333 4444444421 1111111 0 1222 5556665 55555555666667777777777764
Q ss_pred CcccccCCCccCCCcCEEEEccCCCcc-cccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCe
Q 039042 387 RLINLVPSSTSFQNLTSLEISYCNGLK-NVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNE 465 (526)
Q Consensus 387 ~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 465 (526)
..... +.+..+++|++|+++++ .+. ..+ ..+..+++|++|+++++.-...+|.. ..+++|+.
T Consensus 233 l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~ip~~-------------~~l~~L~~ 295 (313)
T 1ogq_A 233 LAFDL-GKVGLSKNLNGLDLRNN-RIYGTLP--QGLTQLKFLHSLNVSFNNLCGEIPQG-------------GNLQRFDV 295 (313)
T ss_dssp ECCBG-GGCCCCTTCCEEECCSS-CCEECCC--GGGGGCTTCCEEECCSSEEEEECCCS-------------TTGGGSCG
T ss_pred eeeec-CcccccCCCCEEECcCC-cccCcCC--hHHhcCcCCCEEECcCCcccccCCCC-------------ccccccCh
Confidence 33233 23555677777777766 344 333 34556677777777775433344432 13566777
Q ss_pred EecCCCccccccC
Q 039042 466 LKLLNLKSLRSFY 478 (526)
Q Consensus 466 L~l~~~~~l~~l~ 478 (526)
+++.+++.+...|
T Consensus 296 l~l~~N~~lc~~p 308 (313)
T 1ogq_A 296 SAYANNKCLCGSP 308 (313)
T ss_dssp GGTCSSSEEESTT
T ss_pred HHhcCCCCccCCC
Confidence 7776665554433
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-17 Score=163.07 Aligned_cols=263 Identities=14% Similarity=0.058 Sum_probs=157.3
Q ss_pred ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhh
Q 039042 53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEK 132 (526)
Q Consensus 53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~ 132 (526)
+++.++....+...+..+ ...+++|++|++++|.....+...+.+ +++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~----------------------------l~~L~~ 62 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQISAADLAP----------------------------FTKLEL 62 (317)
T ss_dssp EEEESCCTTTHHHHHHHH-HTTGGGCSEEECTTSCCCCCCHHHHTT----------------------------CTTCCE
T ss_pred eeEeeccccchhhhHHHH-hccCCCCCEEECcCCccCcCCHHHhhC----------------------------CCcCCE
Confidence 445556555555444432 235678999999988766654433333 667777
Q ss_pred hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccc
Q 039042 133 LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKN 212 (526)
Q Consensus 133 L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 212 (526)
|++++|.++... + +..+++|++|++++|. ++.+ | ..++|++|++++| .+..++.
T Consensus 63 L~Ls~n~l~~~~---~---~~~l~~L~~L~Ls~n~-l~~l-~-------~~~~L~~L~l~~n-~l~~~~~---------- 116 (317)
T 3o53_A 63 LNLSSNVLYETL---D---LESLSTLRTLDLNNNY-VQEL-L-------VGPSIETLHAANN-NISRVSC---------- 116 (317)
T ss_dssp EECTTSCCEEEE---E---ETTCTTCCEEECCSSE-EEEE-E-------ECTTCCEEECCSS-CCSEEEE----------
T ss_pred EECCCCcCCcch---h---hhhcCCCCEEECcCCc-cccc-c-------CCCCcCEEECCCC-ccCCcCc----------
Confidence 888777666432 1 3467888888888763 4443 2 3467888888887 5665544
Q ss_pred ccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccce
Q 039042 213 NIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKF 292 (526)
Q Consensus 213 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 292 (526)
..+++|++|+++++ .+..++... +..+++|++|++++| .+..+++.... ..+++|++|++++|.+.. +
T Consensus 117 --~~~~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~----~~l~~L~~L~L~~N~l~~-~- 184 (317)
T 3o53_A 117 --SRGQGKKNIYLANN-KITMLRDLD--EGCRSRVQYLDLKLN-EIDTVNFAELA----ASSDTLEHLNLQYNFIYD-V- 184 (317)
T ss_dssp --CCCSSCEEEECCSS-CCCSGGGBC--TGGGSSEEEEECTTS-CCCEEEGGGGG----GGTTTCCEEECTTSCCCE-E-
T ss_pred --cccCCCCEEECCCC-CCCCccchh--hhccCCCCEEECCCC-CCCcccHHHHh----hccCcCCEEECCCCcCcc-c-
Confidence 34777888888774 455554432 566788888888887 45554433211 256788888888776532 1
Q ss_pred eccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce-eeccc
Q 039042 293 IFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK-YILKQ 369 (526)
Q Consensus 293 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~-~~~~~ 369 (526)
-+...+++|++|++++|..- .++.. +..+++|+.|+++ +....+|.. + ..+++|+.|++. +.+. ...+.
T Consensus 185 -~~~~~l~~L~~L~Ls~N~l~---~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~--~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 185 -KGQVVFAKLKTLDLSSNKLA---FMGPE-FQSAAGVTWISLRNNKLVLIEKA-L--RFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp -ECCCCCTTCCEEECCSSCCC---EECGG-GGGGTTCSEEECTTSCCCEECTT-C--CCCTTCCEEECTTCCCBHHHHHH
T ss_pred -ccccccccCCEEECCCCcCC---cchhh-hcccCcccEEECcCCcccchhhH-h--hcCCCCCEEEccCCCccCcCHHH
Confidence 11224677888888776543 23332 5667777777777 333333322 1 445666666666 5554 33334
Q ss_pred cccccCcccEEEEeccCCccc
Q 039042 370 ESSIMNNLVILHVTNCHRLIN 390 (526)
Q Consensus 370 ~~~~l~~L~~L~l~~c~~l~~ 390 (526)
.+..++.|+.+++.++..+..
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHS
T ss_pred HHhccccceEEECCCchhccC
Confidence 455556666666665554443
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=3.5e-19 Score=183.21 Aligned_cols=171 Identities=19% Similarity=0.107 Sum_probs=82.6
Q ss_pred hhhhhhhcccccccccccccccccccccCC----cccEEEeccCCCce---ecCCcccccccccccccEEeeeccccccE
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQ----NLTHLTLYNCMNLR---CLFSSCTVSNNSFVRLQYIRIEKCHVLEE 199 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~----~L~~L~L~~c~~l~---~l~p~~l~~l~~l~~L~~L~l~~~~~l~~ 199 (526)
+++|++|++++|.+.+...... ...++ +|++|++++|.... ..+|..+. .+++|++|++++|. +..
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l---~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---~~~~L~~L~Ls~n~-i~~ 127 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCV---LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR---TLPTLQELHLSDNL-LGD 127 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHH---HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT---SCTTCCEEECCSSB-CHH
T ss_pred CCCcCEEeCCCCcCChHHHHHH---HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc---cCCceeEEECCCCc-Cch
Confidence 5778888888886654211101 11233 68888888875221 01244433 67788888888773 332
Q ss_pred EEeecchhhhcccc-cccccccceeecccCccccccccC--cccccCCCCccEEEeccCCCceeccccccCCccccccCC
Q 039042 200 LIVVDNQEEERKNN-IVMFPQLQYLKMYDLEKLTSFCTG--DVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPN 276 (526)
Q Consensus 200 l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~ 276 (526)
....... .. ....++|++|++++| .+...... ...+..+++|++|++++|. +...........+....++
T Consensus 128 ~~~~~l~-----~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 128 AGLQLLC-----EGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp HHHHHHH-----HHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHH-----HHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCC
Confidence 1110000 00 022456888888775 33321100 0114456777777777773 3322111100000012447
Q ss_pred cceEEEeecccccc-ceeccc--cccccccEEEeeeCC
Q 039042 277 LEELIVDAEYIITN-KFIFSE--DLLCKLKCLDVEFVD 311 (526)
Q Consensus 277 L~~L~l~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~ 311 (526)
|++|++++|.+... ...++. ..+++|++|++++|.
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 77777776655321 001111 135666677766653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=3.2e-16 Score=165.33 Aligned_cols=256 Identities=20% Similarity=0.144 Sum_probs=176.4
Q ss_pred cceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhh
Q 039042 52 DLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLE 131 (526)
Q Consensus 52 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~ 131 (526)
+++.++++++++..+|..+ .++|++|++++|.....|. . +++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l~~lp~----~----------------------------l~~L~ 84 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNLTSLPA----L----------------------------PPELR 84 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC----CTTCSEEEECSCCCSCCCC----C----------------------------CTTCC
T ss_pred CCcEEEecCCCcCccChhh----CCCCcEEEecCCCCCCCCC----c----------------------------CCCCC
Confidence 4788889988888888753 3899999999997554444 1 66788
Q ss_pred hhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcc
Q 039042 132 KLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERK 211 (526)
Q Consensus 132 ~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 211 (526)
+|++++|.++.+ |. .+++|++|++++|. ++.+ |. .+++|+.|++++| .+..++.
T Consensus 85 ~L~Ls~N~l~~l----p~----~l~~L~~L~Ls~N~-l~~l-~~------~l~~L~~L~L~~N-~l~~lp~--------- 138 (622)
T 3g06_A 85 TLEVSGNQLTSL----PV----LPPGLLELSIFSNP-LTHL-PA------LPSGLCKLWIFGN-QLTSLPV--------- 138 (622)
T ss_dssp EEEECSCCCSCC----CC----CCTTCCEEEECSCC-CCCC-CC------CCTTCCEEECCSS-CCSCCCC---------
T ss_pred EEEcCCCcCCcC----CC----CCCCCCEEECcCCc-CCCC-CC------CCCCcCEEECCCC-CCCcCCC---------
Confidence 888888877654 21 46778888887764 4443 43 4567888888877 4555432
Q ss_pred cccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccc
Q 039042 212 NNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNK 291 (526)
Q Consensus 212 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 291 (526)
.+++|++|++++| .+..++. .+++|+.|.+++| .+..++ ..+++|+.|++++|.+.
T Consensus 139 ----~l~~L~~L~Ls~N-~l~~l~~------~~~~L~~L~L~~N-~l~~l~---------~~~~~L~~L~Ls~N~l~--- 194 (622)
T 3g06_A 139 ----LPPGLQELSVSDN-QLASLPA------LPSELCKLWAYNN-QLTSLP---------MLPSGLQELSVSDNQLA--- 194 (622)
T ss_dssp ----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSSCCS---
T ss_pred ----CCCCCCEEECcCC-cCCCcCC------ccCCCCEEECCCC-CCCCCc---------ccCCCCcEEECCCCCCC---
Confidence 3577888888775 5555543 2567888888777 555554 24677888888876553
Q ss_pred eeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccc
Q 039042 292 FIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQ 369 (526)
Q Consensus 292 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~ 369 (526)
.+|. .+++|+.|++++|.. + .+|. .+++|+.|+++.+ ...+| ..+++|++|+++ +.+..++.
T Consensus 195 -~l~~-~~~~L~~L~L~~N~l-~--~l~~----~~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 195 -SLPT-LPSELYKLWAYNNRL-T--SLPA----LPSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp -CCCC-CCTTCCEEECCSSCC-S--SCCC----CCTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-
T ss_pred -CCCC-ccchhhEEECcCCcc-c--ccCC----CCCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc-
Confidence 2332 346788888877643 3 2332 3477888888843 44344 344788899988 88887764
Q ss_pred cccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCccc
Q 039042 370 ESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKN 414 (526)
Q Consensus 370 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 414 (526)
.+++|+.|++++| .+..+|..+..+++|+.|++++++ +..
T Consensus 259 ---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~-l~~ 298 (622)
T 3g06_A 259 ---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP-LSE 298 (622)
T ss_dssp ---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC-CCH
T ss_pred ---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC-CCC
Confidence 4688999999988 455777778889999999999874 443
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=1.2e-16 Score=155.02 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=39.0
Q ss_pred cccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccC-CCcCEEEEccCC
Q 039042 349 GMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSF-QNLTSLEISYCN 410 (526)
Q Consensus 349 ~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~L~l~~c~ 410 (526)
..+++|++|++. +.+..++...+..+++|+.|++++|......+..+..+ ++|+.|++++++
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 344566666666 56666655566667777777777775444444445555 477788777763
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=4.2e-16 Score=159.11 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=128.8
Q ss_pred hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042 130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE 209 (526)
Q Consensus 130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 209 (526)
.+.++.++.+++.+ |.+ -.++++.|+|++|. ++.+.+..+. .+++|++|++++| .+..++...
T Consensus 45 ~~~v~c~~~~l~~i----P~~---~~~~l~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~i~~~~----- 107 (440)
T 3zyj_A 45 FSKVICVRKNLREV----PDG---ISTNTRLLNLHENQ-IQIIKVNSFK---HLRHLEILQLSRN-HIRTIEIGA----- 107 (440)
T ss_dssp SCEEECCSCCCSSC----CSC---CCTTCSEEECCSCC-CCEECTTTTS---SCSSCCEEECCSS-CCCEECGGG-----
T ss_pred CCEEEeCCCCcCcC----CCC---CCCCCcEEEccCCc-CCeeCHHHhh---CCCCCCEEECCCC-cCCccChhh-----
Confidence 44555555566655 433 34677888887754 4554444444 6778888888777 555554321
Q ss_pred cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccc
Q 039042 210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIIT 289 (526)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 289 (526)
+..+++|++|+++++ .++.++... +..+++|++|+++++ .+..++...+ ..+++|++|+++++....
T Consensus 108 ----~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 108 ----FNGLANLNTLELFDN-RLTTIPNGA--FVYLSKLKELWLRNN-PIESIPSYAF-----NRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp ----GTTCSSCCEEECCSS-CCSSCCTTT--SCSCSSCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCC
T ss_pred ----ccCCccCCEEECCCC-cCCeeCHhH--hhccccCceeeCCCC-cccccCHHHh-----hhCcccCEeCCCCCCCcc
Confidence 146777777777764 566665432 556777777777777 4555554332 256677777776432222
Q ss_pred cceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCceeec
Q 039042 290 NKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLKYIL 367 (526)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~ 367 (526)
.+..-....+++|++|++++|.. + .+| .+..+++|+.|+++ +....++...+ ..+++|++|++. +.+..+.
T Consensus 175 ~i~~~~~~~l~~L~~L~L~~n~l-~--~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 175 YISEGAFEGLSNLRYLNLAMCNL-R--EIP--NLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp EECTTTTTTCSSCCEEECTTSCC-S--SCC--CCTTCSSCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEEC
T ss_pred eeCcchhhcccccCeecCCCCcC-c--ccc--ccCCCcccCEEECCCCccCccChhhh--ccCccCCEEECCCCceeEEC
Confidence 11111123455666666666532 2 233 24455555555555 22222222222 344555555555 5555555
Q ss_pred cccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042 368 KQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC 409 (526)
Q Consensus 368 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 409 (526)
+..+..+++|+.|+++++ .+..++. .+..+++|+.|+++++
T Consensus 248 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSS
T ss_pred hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCC
Confidence 555555555555555554 2223322 2234455555555543
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3.9e-16 Score=159.95 Aligned_cols=240 Identities=15% Similarity=0.137 Sum_probs=116.7
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER 210 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 210 (526)
..++.++.+++.+ |.+ -.+++++|++++|. ++.+.|..+. .+++|++|++++| .+..++...
T Consensus 57 ~~v~c~~~~l~~i----P~~---~~~~l~~L~L~~n~-i~~~~~~~~~---~l~~L~~L~Ls~n-~i~~~~~~~------ 118 (452)
T 3zyi_A 57 SKVVCTRRGLSEV----PQG---IPSNTRYLNLMENN-IQMIQADTFR---HLHHLEVLQLGRN-SIRQIEVGA------ 118 (452)
T ss_dssp CEEECCSSCCSSC----CSC---CCTTCSEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT------
T ss_pred cEEEECCCCcCcc----CCC---CCCCccEEECcCCc-CceECHHHcC---CCCCCCEEECCCC-ccCCcChhh------
Confidence 4444455555544 332 34567777777753 4444454444 6777777777776 455543221
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN 290 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 290 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++| .+..++...+ ..+++|+.|+++++.....
T Consensus 119 ---~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 119 ---FNGLASLNTLELFDN-WLTVIPSGA--FEYLSKLRELWLRNN-PIESIPSYAF-----NRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp ---TTTCTTCCEEECCSS-CCSBCCTTT--SSSCTTCCEEECCSC-CCCEECTTTT-----TTCTTCCEEECCCCTTCCE
T ss_pred ---ccCcccCCEEECCCC-cCCccChhh--hcccCCCCEEECCCC-CcceeCHhHH-----hcCCcccEEeCCCCCCccc
Confidence 145677777777764 455554442 555677777777766 4555554332 2456666666664322111
Q ss_pred ceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeecc
Q 039042 291 KFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILK 368 (526)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~ 368 (526)
+..-....+++|++|++++|..-. +| .+..+++|+.|+++.+ ...++...+ ..+++|++|++. +.+..+.+
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~---~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD---MP--NLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS---CC--CCTTCTTCCEEECTTSCCSEECGGGG--TTCTTCCEEECTTSCCCEECT
T ss_pred cChhhccCCCCCCEEECCCCcccc---cc--cccccccccEEECcCCcCcccCcccc--cCccCCCEEEeCCCcCceECH
Confidence 111112234555555555543221 22 2344455555555522 222211111 334455555555 44444444
Q ss_pred ccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEcc
Q 039042 369 QESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISY 408 (526)
Q Consensus 369 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 408 (526)
..+..+++|+.|+++++ .+..++. .+..+++|+.|++++
T Consensus 260 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 44444555555555544 2223322 123344455555544
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=5.2e-16 Score=153.65 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=86.4
Q ss_pred cccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecc
Q 039042 183 FVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF 262 (526)
Q Consensus 183 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 262 (526)
++.....+.+++ .+..+|.. ..++|++|+++++ .++.++... +..+++|++|++++| .+..++
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~------------~~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 92 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSG------------LTEAVKSLDLSNN-RITYISNSD--LQRCVNLQALVLTSN-GINTIE 92 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTT------------CCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECTTS-CCCEEC
T ss_pred CCCCeEeeCCCC-Cccccccc------------ccccCcEEECCCC-cCcccCHHH--hccCCCCCEEECCCC-ccCccC
Confidence 444455555554 45555442 2456777777764 456655432 566777777777777 555554
Q ss_pred ccccCCccccccCCcceEEEeeccccccceecc---ccccccccEEEeeeCCcccccccch-hHhhcCCCccEEEEe-ec
Q 039042 263 KRTTNDLTKKVFPNLEELIVDAEYIITNKFIFS---EDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQIE-GY 337 (526)
Q Consensus 263 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~l~~L~~L~l~-~~ 337 (526)
+..+ ..+++|++|++++|.+.. ++ ...+++|++|+++++... .++. ..+..+++|++|++. +.
T Consensus 93 ~~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 93 EDSF-----SSLGSLEHLDLSYNYLSN----LSSSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TTTT-----TTCTTCCEEECCSSCCSS----CCHHHHTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESS
T ss_pred Hhhc-----CCCCCCCEEECCCCcCCc----CCHhHhCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCc
Confidence 4322 256677777776655421 22 124455666666554322 2332 334455555555555 21
Q ss_pred -cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEecc
Q 039042 338 -SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNC 385 (526)
Q Consensus 338 -~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c 385 (526)
...++...+ ..+++|++|++. +.+..+.+..+..+++|++|+++++
T Consensus 161 ~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 161 TFTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp SCCEECTTTT--TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred cccccCHHHc--cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 222222221 334444555444 4444444444444444444444444
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=7.6e-16 Score=157.21 Aligned_cols=225 Identities=15% Similarity=0.076 Sum_probs=171.7
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.++++.|+|++|.++.+... . +..+++|++|+|++|. ++.+.+..+. .+++|++|++++| .+..++...
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~---~-~~~l~~L~~L~Ls~n~-i~~i~~~~~~---~l~~L~~L~L~~n-~l~~~~~~~-- 131 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVN---S-FKHLRHLEILQLSRNH-IRTIEIGAFN---GLANLNTLELFDN-RLTTIPNGA-- 131 (440)
T ss_dssp CTTCSEEECCSCCCCEECTT---T-TSSCSSCCEEECCSSC-CCEECGGGGT---TCSSCCEEECCSS-CCSSCCTTT--
T ss_pred CCCCcEEEccCCcCCeeCHH---H-hhCCCCCCEEECCCCc-CCccChhhcc---CCccCCEEECCCC-cCCeeCHhH--
Confidence 46799999999988765322 2 5689999999999974 5555555544 7999999999998 666665432
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++|..+..++...+ ..+++|+.|++++|.
T Consensus 132 -------~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~-----~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 132 -------FVYLSKLKELWLRNN-PIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAF-----EGLSNLRYLNLAMCN 196 (440)
T ss_dssp -------SCSCSSCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTT-----TTCSSCCEEECTTSC
T ss_pred -------hhccccCceeeCCCC-cccccCHHH--hhhCcccCEeCCCCCCCcceeCcchh-----hcccccCeecCCCCc
Confidence 257899999999974 567776543 77899999999999888888776544 378999999999876
Q ss_pred ccccceecc-ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCc
Q 039042 287 IITNKFIFS-EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDL 363 (526)
Q Consensus 287 ~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l 363 (526)
+. .+| ...+++|++|++++|.. + .++...+..+++|++|++..+ ...++...+ ..+++|++|++. +.+
T Consensus 197 l~----~~~~~~~l~~L~~L~Ls~N~l-~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 197 LR----EIPNLTPLIKLDELDLSGNHL-S--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAF--DNLQSLVEINLAHNNL 267 (440)
T ss_dssp CS----SCCCCTTCSSCCEEECTTSCC-C--EECTTTTTTCTTCCEEECTTCCCCEECTTSS--TTCTTCCEEECTTSCC
T ss_pred Cc----cccccCCCcccCEEECCCCcc-C--ccChhhhccCccCCEEECCCCceeEEChhhh--cCCCCCCEEECCCCCC
Confidence 63 233 34678999999998754 3 344557888999999999843 444444443 677899999999 999
Q ss_pred eeeccccccccCcccEEEEeccC
Q 039042 364 KYILKQESSIMNNLVILHVTNCH 386 (526)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~l~~c~ 386 (526)
..+++..+..+++|+.|++++++
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 99988888889999999998764
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=151.61 Aligned_cols=228 Identities=18% Similarity=0.096 Sum_probs=165.1
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceec--CCcccccccccccccEEeeeccccccEEEeec
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL--FSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD 204 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~ 204 (526)
.++|++|++++|.++.+ +.+.+..+++|++|++++|. ++.. .|..+. .+++|++|++++| .+..++..+
T Consensus 27 ~~~l~~L~L~~n~l~~i----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~~~L~~L~Ls~n-~i~~l~~~~ 97 (306)
T 2z66_A 27 PSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF---GTTSLKYLDLSFN-GVITMSSNF 97 (306)
T ss_dssp CTTCCEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHH---SCSCCCEEECCSC-SEEEEEEEE
T ss_pred CCCCCEEECCCCccCcc----CHhHhhccccCCEEECCCCc-cCcccCcccccc---cccccCEEECCCC-ccccChhhc
Confidence 56899999999988765 32224578999999999875 3322 133333 6899999999998 667776654
Q ss_pred chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042 205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 284 (526)
..+++|++|+++++ .+..++.. ..+..+++|++|++++| .+....+..+ ..+++|++|++++
T Consensus 98 ----------~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~ 159 (306)
T 2z66_A 98 ----------LGLEQLEHLDFQHS-NLKQMSEF-SVFLSLRNLIYLDISHT-HTRVAFNGIF-----NGLSSLEVLKMAG 159 (306)
T ss_dssp ----------ETCTTCCEEECTTS-EEESSTTT-TTTTTCTTCCEEECTTS-CCEECSTTTT-----TTCTTCCEEECTT
T ss_pred ----------CCCCCCCEEECCCC-cccccccc-hhhhhccCCCEEECCCC-cCCccchhhc-----ccCcCCCEEECCC
Confidence 57999999999985 56666541 12678999999999998 4555554433 3689999999998
Q ss_pred ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cC
Q 039042 285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YD 362 (526)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~ 362 (526)
|.+......-....+++|++|++++|.... ++...+..+++|++|+++ +....++...+ ..+++|++|++. +.
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNSLQVLDYSLNH 234 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCSBCCSGGG--TTCTTCCEEECTTSC
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCC---cCHHHhcCCCCCCEEECCCCccCccChhhc--cCcccCCEeECCCCC
Confidence 766431111223467899999999876433 444467889999999999 43333333222 567899999999 88
Q ss_pred ceeecccccccc-CcccEEEEeccC
Q 039042 363 LKYILKQESSIM-NNLVILHVTNCH 386 (526)
Q Consensus 363 l~~~~~~~~~~l-~~L~~L~l~~c~ 386 (526)
+....+..+..+ ++|+.|++++++
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CcccCHHHHHhhhccCCEEEccCCC
Confidence 888888788877 499999999874
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.1e-16 Score=148.88 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=56.3
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
..++|++|+++++. ++.+.+..+. .+++|++|++++| .+..+.... +..+++|++|+++++..+..
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~~~---~~~~L~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAASFR---ACRNLTILWLHSN-VLARIDAAA---------FTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSCTTCCC
T ss_pred CCCCceEEEeeCCc-CCccCHHHcc---cCCCCCEEECCCC-ccceeCHhh---------cCCccCCCEEeCCCCCCccc
Confidence 34566666666643 4444333333 5666666666666 444442211 14566666666666543555
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
++... +..+++|++|++++| .+..+++..+ ..+++|++|++++|.
T Consensus 96 ~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 96 VDPAT--FHGLGRLHTLHLDRC-GLQELGPGLF-----RGLAALQYLYLQDNA 140 (285)
T ss_dssp CCTTT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred cCHHH--hcCCcCCCEEECCCC-cCCEECHhHh-----hCCcCCCEEECCCCc
Confidence 43221 455666666666665 3443333221 234555555555443
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.9e-18 Score=177.77 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=108.4
Q ss_pred hhhhhccccccccccc-ccccccccccCCcccEEEeccCCCceecCCccccc--ccccccccEEeeeccccccEEEeecc
Q 039042 129 KLEKLELRSINIERIW-RNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS--NNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 129 ~L~~L~L~~~~l~~~~-~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~--l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
+|++|++++|.++..- ...+.. +..+++|++|++++|. ++...+..++. ....++|++|++++| .+......
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~-- 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE-- 160 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH--
T ss_pred ceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH--
Confidence 6889999998776421 111222 5578899999999876 33222222221 013457999999888 33321100
Q ss_pred hhhhcccccccccccceeecccCccccccccCc---ccccCCCCccEEEeccCCCceec-----cccccCCccccccCCc
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD---VHMLEFPSLKELWISRCPEFMVR-----FKRTTNDLTKKVFPNL 277 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~-----~~~~~~~~~~~~l~~L 277 (526)
.....+..+++|++|+++++. +....... ......++|++|++++| .+... +..+ ..+++|
T Consensus 161 ---~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l------~~~~~L 229 (461)
T 1z7x_W 161 ---PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIV------ASKASL 229 (461)
T ss_dssp ---HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHH------HHCTTC
T ss_pred ---HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHH------HhCCCc
Confidence 001112457889999998764 43321110 00113568999999988 44432 2222 357889
Q ss_pred ceEEEeecccccc-ceeccc---cccccccEEEeeeCCcccccc---cchhHhhcCCCccEEEEe
Q 039042 278 EELIVDAEYIITN-KFIFSE---DLLCKLKCLDVEFVDELTTIL---SLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 278 ~~L~l~~~~~~~~-~~~~~~---~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~l~~L~~L~l~ 335 (526)
++|++++|.+.+. ...+.. ..+++|++|++++|. +++.. ++ ..+..+++|++|+++
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC-RVLRAKESLKELSLA 292 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-HHHHHCTTCCEEECT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH-HHHhhCCCcceEECC
Confidence 9999997766431 111111 246789999998874 33000 22 245567888888887
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=7.2e-16 Score=159.11 Aligned_cols=237 Identities=12% Similarity=0.147 Sum_probs=129.5
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|+|++|.++.+.. .. +..+++|++|+|++|. ++..+| + +.+++|++|++++| .+..++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~---~~-~~~l~~L~~L~Ls~N~-l~~~~~--l---~~l~~L~~L~Ls~N-~l~~l~----- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISA---AD-LAPFTKLELLNLSSNV-LYETLD--L---ESLSTLRTLDLNNN-YVQELL----- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCG---GG-GTTCTTCCEEECTTSC-CEEEEE--C---TTCTTCCEEECCSS-EEEEEE-----
T ss_pred CCCccEEEeeCCcCCCCCH---HH-HhCCCCCCEEEeeCCC-CCCCcc--c---ccCCCCCEEEecCC-cCCCCC-----
Confidence 4456666666665554311 11 3455666666666543 322222 2 25556666666655 343332
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
..++|++|+++++ .+..++.. .+++|+.|++++| .+..+++.
T Consensus 97 ---------~~~~L~~L~L~~N-~l~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~---------------------- 138 (487)
T 3oja_A 97 ---------VGPSIETLHAANN-NISRVSCS-----RGQGKKNIYLANN-KITMLRDL---------------------- 138 (487)
T ss_dssp ---------ECTTCCEEECCSS-CCCCEEEC-----CCSSCEEEECCSS-CCCSGGGB----------------------
T ss_pred ---------CCCCcCEEECcCC-cCCCCCcc-----ccCCCCEEECCCC-CCCCCCch----------------------
Confidence 1345555555553 33443332 3455555555555 33333221
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccccceEEEec-cCce
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEVIIRRVFRC-YDLK 364 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~ 364 (526)
....+++|+.|++++|.... ..|......+++|+.|+++ +....++.. ..+++|++|+++ +.+.
T Consensus 139 --------~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 139 --------DEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHLNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp --------CGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEEECTTSCCCEEECC----CCCTTCCEEECCSSCCC
T ss_pred --------hhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEEecCCCcccccccc----ccCCCCCEEECCCCCCC
Confidence 11234455555555543322 2233233356667777666 332222221 346788888888 7888
Q ss_pred eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 365 YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 365 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
.+++. +..+++|+.|++++|. +..+|..+..+++|+.|++++++ +.....+.++..++.|+.+++..
T Consensus 205 ~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 205 FMGPE-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp EECGG-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHh-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEeccc
Confidence 87654 7778899999999874 55677777788899999998874 44222224566677777766653
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=8.2e-16 Score=147.42 Aligned_cols=222 Identities=12% Similarity=-0.003 Sum_probs=129.7
Q ss_pred cEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCc
Q 039042 159 THLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD 238 (526)
Q Consensus 159 ~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 238 (526)
++++.++ ..++.+ |.. ..++|++|+++++ .+..++... +..+++|++|+++++ .+..+....
T Consensus 14 ~~~~c~~-~~l~~i-p~~-----~~~~l~~L~l~~n-~i~~~~~~~---------~~~~~~L~~L~l~~n-~l~~~~~~~ 75 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAV-PVG-----IPAASQRIFLHGN-RISHVPAAS---------FRACRNLTILWLHSN-VLARIDAAA 75 (285)
T ss_dssp CEEECCS-SCCSSC-CTT-----CCTTCSEEECTTS-CCCEECTTT---------TTTCTTCCEEECCSS-CCCEECTTT
T ss_pred eEEEcCc-CCcccC-CcC-----CCCCceEEEeeCC-cCCccCHHH---------cccCCCCCEEECCCC-ccceeCHhh
Confidence 5666665 345554 543 3468999999888 666665332 257888999999875 556653332
Q ss_pred ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCccccccc
Q 039042 239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILS 318 (526)
Q Consensus 239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 318 (526)
+..+++|++|++++|..+..+++..+ ..+++|++|+++++.+.. +..-....+++|++|+++++... .+
T Consensus 76 --~~~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~---~~ 144 (285)
T 1ozn_A 76 --FTGLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQ---AL 144 (285)
T ss_dssp --TTTCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCC---CC
T ss_pred --cCCccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCccc---cc
Confidence 66788889998888865666644332 357777777777665421 10001223455555555554322 22
Q ss_pred chhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCcc
Q 039042 319 LDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTS 397 (526)
Q Consensus 319 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 397 (526)
+...+..+ ++|++|++. +.+..+++..+..+++|+.|+++++......+..+..
T Consensus 145 ~~~~~~~l-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 145 PDDTFRDL-------------------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp CTTTTTTC-------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CHhHhccC-------------------------CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 22233334 455555555 5555555555566666777777666433333445556
Q ss_pred CCCcCEEEEccCCCcccccchHHHhhcccccEEEEcccc
Q 039042 398 FQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCA 436 (526)
Q Consensus 398 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 436 (526)
+++|+.|+++++ .++.++. ..+..+++|+.|++++++
T Consensus 200 l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 200 LGRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred cccccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence 667777777665 4555432 345566777777776643
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.3e-14 Score=135.27 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=108.8
Q ss_pred cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042 185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR 264 (526)
Q Consensus 185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 264 (526)
+|++|++++| .+..++... +..+++|++|+++++..++.++... +..+++|++|++++|..++.+++.
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~---------~~~l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHA---------FSNLPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TCCEEEEESC-CCSEECTTT---------TTTCTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECTT
T ss_pred cccEEEEeCC-cceEECHHH---------ccCCCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCHH
Confidence 6777777776 555554422 1456777777777654355655432 556777777777764466666544
Q ss_pred ccCCccccccCCcceEEEeeccccccceecc-cccccccc---EEEeeeCCcccccccchhHhhcCCCcc-EEEEeec-c
Q 039042 265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFS-EDLLCKLK---CLDVEFVDELTTILSLDDFLQRFPTLK-VLQIEGY-S 338 (526)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~---~L~l~~~~~l~~~~~~~~~l~~l~~L~-~L~l~~~-~ 338 (526)
.+ ..+++|++|++++|.+.. +| ...+++|+ +|+++++..++ .++...+..+++|+ .|+++.+ .
T Consensus 100 ~f-----~~l~~L~~L~l~~n~l~~----lp~~~~l~~L~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 100 AL-----KELPLLKFLGIFNTGLKM----FPDLTKVYSTDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp SE-----ECCTTCCEEEEEEECCCS----CCCCTTCCBCCSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEECCSCCC
T ss_pred Hh-----CCCCCCCEEeCCCCCCcc----ccccccccccccccEEECCCCcchh--hcCcccccchhcceeEEEcCCCCC
Confidence 32 256777777777665532 22 23345555 77777764555 45555566677777 7766632 3
Q ss_pred ccccCCCcCccccccceEEEec-c-Cceeecccccccc-CcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042 339 DWLPKEKVENGMEVIIRRVFRC-Y-DLKYILKQESSIM-NNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 339 ~~~~~~~~~~~~~~~L~~L~l~-~-~l~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
..++...+ .. ++|++|++. + .+..+++..+..+ ++|+.|+++++ .+..+|.. .+++|+.|++.++
T Consensus 169 ~~i~~~~~--~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 169 TSVQGYAF--NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEECTTTT--TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC
T ss_pred cccCHhhc--CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCc
Confidence 34443332 11 456666665 4 3555555555555 55555555553 23333322 4455555555444
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=2.9e-14 Score=140.81 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=58.0
Q ss_pred ceEEEec--cCceeeccccccccC-cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEE
Q 039042 354 IRRVFRC--YDLKYILKQESSIMN-NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREM 430 (526)
Q Consensus 354 L~~L~l~--~~l~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 430 (526)
+..+.+. +.+..++...+..+. .++.|+++++ .+..++......++|+.|.+.++..++.++.. .+..+++|++|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~L 207 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVIL 207 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchh
Confidence 3444443 344444444443332 3455555543 23344444334445555555555455554421 33455555555
Q ss_pred EEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEe
Q 039042 431 KIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVD 495 (526)
Q Consensus 431 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~ 495 (526)
+++++ .++.+|.. .|.+|+.|++.++++++.+|. +..+++|+.+++.
T Consensus 208 dLs~N-~l~~lp~~--------------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 208 DISRT-RIHSLPSY--------------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp ECTTS-CCCCCCSS--------------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred hcCCC-CcCccChh--------------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 55553 34444432 245555555555555555553 2345555555553
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=6.1e-14 Score=138.45 Aligned_cols=240 Identities=14% Similarity=0.076 Sum_probs=158.3
Q ss_pred ceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccc
Q 039042 221 QYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLC 300 (526)
Q Consensus 221 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 300 (526)
+.++.++ .+++++|.. + .+++++|+++++ +++.++...+ ..+++|++|++++|.+...+..-....++
T Consensus 12 ~~v~C~~-~~Lt~iP~~---l--~~~l~~L~Ls~N-~i~~i~~~~f-----~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~ 79 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSD---L--PRNAIELRFVLT-KLRVIQKGAF-----SGFGDLEKIEISQNDVLEVIEADVFSNLP 79 (350)
T ss_dssp TEEEEES-TTCCSCCTT---C--CTTCSEEEEESC-CCSEECTTSS-----TTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred CEEEecC-CCCCccCcC---c--CCCCCEEEccCC-cCCCcCHHHH-----cCCCCCCEEECcCCCCCCccChhHhhcch
Confidence 4444443 356666655 2 457788888777 5677766433 25677777777766543211111112333
Q ss_pred cccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCcccE
Q 039042 301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVI 379 (526)
Q Consensus 301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~ 379 (526)
++.++.+..++.++ .++...+. .+++|++|++. +.+..+++..+....++..
T Consensus 80 ~l~~~l~~~~N~l~--~l~~~~f~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 80 KLHEIRIEKANNLL--YINPEAFQ-------------------------NLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp TCCEEEEEEETTCC--EECTTSBC-------------------------CCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred hhhhhhcccCCccc--ccCchhhh-------------------------hccccccccccccccccCCchhhcccchhhh
Confidence 44444333333333 23333333 44555555555 5555555555556678899
Q ss_pred EEEeccCCcccccCC-Ccc-CCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCe
Q 039042 380 LHVTNCHRLINLVPS-STS-FQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV 457 (526)
Q Consensus 380 L~l~~c~~l~~l~~~-~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 457 (526)
|++.++..+..++.. +.. ...++.|+++++ +++.++. .+...++|+++++.+++.++.++... +
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~--~~f~~~~L~~l~l~~~n~l~~i~~~~-----------f 198 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN--SAFNGTQLDELNLSDNNNLEELPNDV-----------F 198 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT--TSSTTEEEEEEECTTCTTCCCCCTTT-----------T
T ss_pred hhhccccccccccccchhhcchhhhhhccccc-cccCCCh--hhccccchhHHhhccCCcccCCCHHH-----------h
Confidence 999998888877653 233 346889999886 6887763 33355789999999888899887642 2
Q ss_pred eeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCCCCcccceEEec
Q 039042 458 IAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 458 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~~L~~l~l~ 519 (526)
..+++|+.|++++ +.++.+|... +.+|++|.+.+|.+++.+|. ...+++|+.+++.
T Consensus 199 ~~l~~L~~LdLs~-N~l~~lp~~~----~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 199 HGASGPVILDISR-TRIHSLPSYG----LENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTEECCSEEECTT-SCCCCCCSSS----CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ccCcccchhhcCC-CCcCccChhh----hccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 3679999999998 4799998764 78999999999999999985 4558999999886
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=9.3e-16 Score=149.04 Aligned_cols=227 Identities=16% Similarity=0.130 Sum_probs=121.8
Q ss_pred hhhhhhcccccccccccccccccccc-------cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEE
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTC-------GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEEL 200 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~-------~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l 200 (526)
..|+.|++++|.++..-. +.. +. .+++|++|++++|.. +...|..+. ++.+++|++|++++| .+..+
T Consensus 63 ~~L~~L~L~~n~l~~~~~--~~~-~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~ 136 (312)
T 1wwl_A 63 DIIKSLSLKRLTVRAARI--PSR-ILFGALRVLGISGLQELTLENLEV-TGTAPPPLL-EATGPDLNILNLRNV-SWATR 136 (312)
T ss_dssp HHHHHCCCCEEEEEEEEC--BHH-HHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSS-SCCSCCCSEEEEESC-BCSSS
T ss_pred HHHhhcccccccccCCCc--CHH-HHHHHHHhcCcCCccEEEccCCcc-cchhHHHHH-HhcCCCccEEEccCC-CCcch
Confidence 348888888887653211 211 22 478888888888753 333455542 137888888888887 45444
Q ss_pred Eeecchhhhcccccccc-----cccceeecccCccccccccCcccccCCCCccEEEeccCCCcee--ccccccCCccccc
Q 039042 201 IVVDNQEEERKNNIVMF-----PQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKV 273 (526)
Q Consensus 201 ~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~ 273 (526)
+..+ ..+ ++|++|+++++ .+..++... +..+++|++|++++|.-... ++....- ..
T Consensus 137 ~~~~----------~~l~~~~~~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----~~ 199 (312)
T 1wwl_A 137 DAWL----------AELQQWLKPGLKVLSIAQA-HSLNFSCEQ--VRVFPALSTLDLSDNPELGERGLISALCP----LK 199 (312)
T ss_dssp SSHH----------HHHHTTCCTTCCEEEEESC-SCCCCCTTT--CCCCSSCCEEECCSCTTCHHHHHHHHSCT----TS
T ss_pred hHHH----------HHHHHhhcCCCcEEEeeCC-CCccchHHH--hccCCCCCEEECCCCCcCcchHHHHHHHh----cc
Confidence 3222 223 77788887764 455554332 66677777777777742211 1111100 24
Q ss_pred cCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ec-cccccCCCcCcccc
Q 039042 274 FPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GY-SDWLPKEKVENGME 351 (526)
Q Consensus 274 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~ 351 (526)
+++|++|++++|.+.. +. .++...+..+++|++|+++ +. ....+...+ ..+
T Consensus 200 l~~L~~L~L~~N~l~~-~~------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l 252 (312)
T 1wwl_A 200 FPTLQVLALRNAGMET-PS------------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--DWP 252 (312)
T ss_dssp CTTCCEEECTTSCCCC-HH------------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--CCC
T ss_pred CCCCCEEECCCCcCcc-hH------------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhh--hhc
Confidence 5556666665544321 00 1122233445555555555 22 111111111 334
Q ss_pred ccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042 352 VIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 352 ~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
++|++|+++ +.+..++.... ++|++|+++++ .+..+|. +..+++|++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC---SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred CCCCEEECCCCccChhhhhcc---CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 566666666 66665543222 67777777766 3444443 666777777777665
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=3.9e-15 Score=153.59 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=147.4
Q ss_pred hHHHHHhccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcc
Q 039042 40 KDWLILQLQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILED 117 (526)
Q Consensus 40 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~ 117 (526)
...+........+|+.++++++.+..++.. ....+++|++|+|++|.....++ +..+++|++ ++++. +..++
T Consensus 23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-- 96 (487)
T 3oja_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL-- 96 (487)
T ss_dssp HHHHHTTSTTGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE--
T ss_pred HHHHHHhcccCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC--
Confidence 444555555566888888888877776532 34578889999998887654433 567777777 55442 22222
Q ss_pred cccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccc
Q 039042 118 NANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVL 197 (526)
Q Consensus 118 ~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l 197 (526)
..++|++|++++|.++.+ +.. .+++|++|++++|. ++.+.|..++ .+++|++|++++| .+
T Consensus 97 --------~~~~L~~L~L~~N~l~~~----~~~---~l~~L~~L~L~~N~-l~~~~~~~~~---~l~~L~~L~Ls~N-~l 156 (487)
T 3oja_A 97 --------VGPSIETLHAANNNISRV----SCS---RGQGKKNIYLANNK-ITMLRDLDEG---CRSRVQYLDLKLN-EI 156 (487)
T ss_dssp --------ECTTCCEEECCSSCCCCE----EEC---CCSSCEEEECCSSC-CCSGGGBCGG---GGSSEEEEECTTS-CC
T ss_pred --------CCCCcCEEECcCCcCCCC----Ccc---ccCCCCEEECCCCC-CCCCCchhhc---CCCCCCEEECCCC-CC
Confidence 146777788877776654 212 46778888887764 4444454444 6777888888777 44
Q ss_pred cEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCc
Q 039042 198 EELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNL 277 (526)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L 277 (526)
..++..... ..+++|++|+++++ .+..++.. ..+++|+.|++++| .+..+++.+ ..+++|
T Consensus 157 ~~~~~~~l~--------~~l~~L~~L~Ls~N-~l~~~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~------~~l~~L 216 (487)
T 3oja_A 157 DTVNFAELA--------ASSDTLEHLNLQYN-FIYDVKGQ----VVFAKLKTLDLSSN-KLAFMGPEF------QSAAGV 216 (487)
T ss_dssp CEEEGGGGG--------GGTTTCCEEECTTS-CCCEEECC----CCCTTCCEEECCSS-CCCEECGGG------GGGTTC
T ss_pred CCcChHHHh--------hhCCcccEEecCCC-cccccccc----ccCCCCCEEECCCC-CCCCCCHhH------cCCCCc
Confidence 443322111 25677888888774 45555333 25777888888777 566666654 357777
Q ss_pred ceEEEeeccccccceeccc--cccccccEEEeeeCCcccccccchhHhhcCCCccEEEE
Q 039042 278 EELIVDAEYIITNKFIFSE--DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQI 334 (526)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l 334 (526)
+.|++++|.+.. +|. ..+++|+.|++++|+... ......+..++.|+.+.+
T Consensus 217 ~~L~Ls~N~l~~----lp~~l~~l~~L~~L~l~~N~l~c--~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 217 TWISLRNNKLVL----IEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp SEEECTTSCCCE----ECTTCCCCTTCCEEECTTCCBCH--HHHHHHHTTCHHHHHHHH
T ss_pred cEEEecCCcCcc----cchhhccCCCCCEEEcCCCCCcC--cchHHHHHhCCCCcEEec
Confidence 887777665532 332 245677777777766542 111223444555554444
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=2e-15 Score=146.62 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=96.2
Q ss_pred CCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccch-hHhhcCCCccEEEEe-ecccc---ccCCCcCcc
Q 039042 275 PNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLD-DFLQRFPTLKVLQIE-GYSDW---LPKEKVENG 349 (526)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~l~~L~~L~l~-~~~~~---~~~~~~~~~ 349 (526)
++|++|++++|.+.. +..-....+++|++|++++|.......++. ..+..+++|++|+++ +.... ++... ..
T Consensus 149 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL--AA 225 (312)
T ss_dssp TTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH--HH
T ss_pred CCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH--Hh
Confidence 556666666554421 110112245566666666655332000111 112567788888887 33221 11111 03
Q ss_pred ccccceEEEec-cCceeecc-ccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042 350 MEVIIRRVFRC-YDLKYILK-QESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL 427 (526)
Q Consensus 350 ~~~~L~~L~l~-~~l~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 427 (526)
.+++|++|+++ +.+....+ ..+..+++|+.|++++|. +..+|..+. ++|++|+++++ +++.++. +..+++|
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L 298 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELPQV 298 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSCEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh---HhhCCCC
Confidence 45899999999 88887653 456668999999999985 457766554 89999999987 6887752 6788999
Q ss_pred cEEEEcccc
Q 039042 428 REMKIESCA 436 (526)
Q Consensus 428 ~~L~i~~c~ 436 (526)
++|++++++
T Consensus 299 ~~L~L~~N~ 307 (312)
T 1wwl_A 299 GNLSLKGNP 307 (312)
T ss_dssp EEEECTTCT
T ss_pred CEEeccCCC
Confidence 999999854
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=8.3e-14 Score=129.68 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred EEEEeccCCcccccCC-CccCCCcC-EEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCC
Q 039042 379 ILHVTNCHRLINLVPS-STSFQNLT-SLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDE 456 (526)
Q Consensus 379 ~L~l~~c~~l~~l~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 456 (526)
.|+++++..+..++.. +..+++|+ .|+++++ +++.++.. .... ++|++|+++++..++.++...
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~~----------- 199 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKDA----------- 199 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCCEECTTT-----------
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHHH-----------
Confidence 5555554344444332 34455555 5555544 34444322 1122 566666666653455544321
Q ss_pred eeee-CccCeEecCCCccccccCCCCccccCCCccEEeEecCCC
Q 039042 457 VIAF-SELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTN 499 (526)
Q Consensus 457 ~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~ 499 (526)
+..+ ++|+.|++++ +.++.+|.. .+++|+.|++.++..
T Consensus 200 ~~~l~~~L~~L~l~~-N~l~~l~~~----~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQ-TSVTALPSK----GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTCSBCCSEEECTT-CCCCCCCCT----TCTTCSEEECTTC--
T ss_pred hhccccCCcEEECCC-CccccCChh----HhccCceeeccCccC
Confidence 1234 6666666665 455566554 356667766666543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=1.8e-13 Score=131.23 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=119.7
Q ss_pred cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042 152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL 231 (526)
Q Consensus 152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 231 (526)
+.++++++++++.++ .++.+ |..+ .++++.|++++| .+..++... +..+++|++|+++++ .+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~i-p~~~-----~~~l~~L~L~~N-~l~~~~~~~---------~~~l~~L~~L~L~~n-~l 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTAL-PPDL-----PKDTTILHLSEN-LLYTFSLAT---------LMPYTRLTQLNLDRA-EL 67 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSC-CSCC-----CTTCCEEECTTS-CCSEEEGGG---------GTTCTTCCEEECTTS-CC
T ss_pred ccccCCccEEECCCC-CCCcC-CCCC-----CCCCCEEEcCCC-cCCccCHHH---------hhcCCCCCEEECCCC-cc
Confidence 447788888888875 45555 5433 357888888888 555554322 156788888888874 45
Q ss_pred cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042 232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (526)
..++.. ..+++|++|+++++ .+..++..+ ..+++|+.|++++|.+. .+
T Consensus 68 ~~~~~~----~~l~~L~~L~Ls~N-~l~~l~~~~------~~l~~L~~L~l~~N~l~----~l----------------- 115 (290)
T 1p9a_G 68 TKLQVD----GTLPVLGTLDLSHN-QLQSLPLLG------QTLPALTVLDVSFNRLT----SL----------------- 115 (290)
T ss_dssp CEEECC----SCCTTCCEEECCSS-CCSSCCCCT------TTCTTCCEEECCSSCCC----CC-----------------
T ss_pred CcccCC----CCCCcCCEEECCCC-cCCcCchhh------ccCCCCCEEECCCCcCc----cc-----------------
Confidence 555433 36778888888877 556555443 34666777766655442 12
Q ss_pred cccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcc
Q 039042 312 ELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI 389 (526)
Q Consensus 312 ~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~ 389 (526)
+...+..+++|++|+++.+ ...++...+ ..+++|+.|++. +.+..+++..+..+++|+.|+++++ .+.
T Consensus 116 -------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~ 185 (290)
T 1p9a_G 116 -------PLGALRGLGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLY 185 (290)
T ss_dssp -------CSSTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred -------CHHHHcCCCCCCEEECCCCCCCccChhhc--ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCC
Confidence 2223334444444444422 222222222 344566666666 6666666666666777777777776 345
Q ss_pred cccCCCccCCCcCEEEEccCC
Q 039042 390 NLVPSSTSFQNLTSLEISYCN 410 (526)
Q Consensus 390 ~l~~~~~~~~~L~~L~l~~c~ 410 (526)
.+|..+...++|+.|++++.+
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCC
T ss_pred ccChhhcccccCCeEEeCCCC
Confidence 666666666777777777643
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=7.4e-14 Score=133.92 Aligned_cols=200 Identities=14% Similarity=0.086 Sum_probs=123.8
Q ss_pred ccccccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhh
Q 039042 47 LQGIEDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLF 126 (526)
Q Consensus 47 l~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~ 126 (526)
++.+.+++.++++..++..+|..+ .+++++|++++|.....+...+.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~---------------------------- 53 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMP---------------------------- 53 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTT----------------------------
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhc----------------------------
Confidence 456667788888887887777642 478999999988765444333433
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.+.. ...+++|++|++++|. ++.+ |..+. .+++|++|++++| .+..++...
T Consensus 54 l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~-l~~l-~~~~~---~l~~L~~L~l~~N-~l~~l~~~~-- 119 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQ-LQSL-PLLGQ---TLPALTVLDVSFN-RLTSLPLGA-- 119 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSC-CSSC-CCCTT---TCTTCCEEECCSS-CCCCCCSST--
T ss_pred CCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCc-CCcC-chhhc---cCCCCCEEECCCC-cCcccCHHH--
Confidence 5667777777776665422 1256777777777753 3333 44433 5777777777776 455544321
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|+.|+++++ +++.++...+. .+++|+.|++++|.
T Consensus 120 -------~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~-----~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 120 -------LRGLGELQELYLKGN-ELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLN-----GLENLDTLLLQENS 183 (290)
T ss_dssp -------TTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTT-----TCTTCCEEECCSSC
T ss_pred -------HcCCCCCCEEECCCC-CCCccChhh--cccccCCCEEECCCC-cCCccCHHHhc-----CcCCCCEEECCCCc
Confidence 145677777777764 455555442 456777777777776 56666654432 56777777777665
Q ss_pred ccccceecccc--ccccccEEEeeeCCc
Q 039042 287 IITNKFIFSED--LLCKLKCLDVEFVDE 312 (526)
Q Consensus 287 ~~~~~~~~~~~--~~~~L~~L~l~~~~~ 312 (526)
+. .+|.. ..++|+.+++++++.
T Consensus 184 l~----~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 184 LY----TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CC----CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC----ccChhhcccccCCeEEeCCCCc
Confidence 53 23433 334677777776553
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=7.8e-14 Score=132.56 Aligned_cols=211 Identities=13% Similarity=0.155 Sum_probs=126.9
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+.++..+++.++.+.+... ...+++|+.|.+.+|. ++.+ + . ++.+++|++|++++| .+..++ .
T Consensus 18 ~~~l~~l~l~~~~~~~~~~------~~~l~~L~~L~l~~~~-i~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~-~--- 80 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT------QNELNSIDQIIANNSD-IKSV-Q-G---IQYLPNVRYLALGGN-KLHDIS-A--- 80 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC------HHHHTTCCEEECTTSC-CCCC-T-T---GGGCTTCCEEECTTS-CCCCCG-G---
T ss_pred HHHHHHHHhcCcccccccc------cccccceeeeeeCCCC-cccc-c-c---cccCCCCcEEECCCC-CCCCch-h---
Confidence 6777788887776654411 3368888888888864 4433 3 2 337888888888887 454432 1
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++| .+..+++..+ ..+++|++|++++|.
T Consensus 81 -------l~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~-----~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 81 -------LKELTNLTYLILTGN-QLQSLPNGV--FDKLTNLKELVLVEN-QLQSLPDGVF-----DKLTNLTYLNLAHNQ 144 (272)
T ss_dssp -------GTTCTTCCEEECTTS-CCCCCCTTT--TTTCTTCCEEECTTS-CCCCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred -------hcCCCCCCEEECCCC-ccCccChhH--hcCCcCCCEEECCCC-cCCccCHHHh-----ccCCCCCEEECCCCc
Confidence 257888888888875 566665442 567888888888887 5666655432 256777777777665
Q ss_pred ccccceeccc---cccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cC
Q 039042 287 IITNKFIFSE---DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YD 362 (526)
Q Consensus 287 ~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~ 362 (526)
+. .++. ..+++|++|++++|.. + .++...+..++ +|++|++. +.
T Consensus 145 l~----~~~~~~~~~l~~L~~L~l~~n~l-~--~~~~~~~~~l~-------------------------~L~~L~L~~N~ 192 (272)
T 3rfs_A 145 LQ----SLPKGVFDKLTNLTELDLSYNQL-Q--SLPEGVFDKLT-------------------------QLKDLRLYQNQ 192 (272)
T ss_dssp CC----CCCTTTTTTCTTCCEEECCSSCC-C--CCCTTTTTTCT-------------------------TCCEEECCSSC
T ss_pred cC----ccCHHHhccCccCCEEECCCCCc-C--ccCHHHhcCCc-------------------------cCCEEECCCCc
Confidence 52 1221 2345566666665532 2 23332334444 44455554 45
Q ss_pred ceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042 363 LKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 363 l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
+..+++..+..+++|+.|++++++-. ..+++|+.|+++.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHH
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHH
Confidence 55555555666677777777766322 23445555555544
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.49 E-value=4.1e-13 Score=127.44 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=65.6
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
.+.++++++++ .++.+ |..+. +++++|++++| .+..++... +..+++|++|+++++ .+..++
T Consensus 16 ~~~~~l~~~~~-~l~~i-p~~~~-----~~l~~L~l~~n-~l~~~~~~~---------~~~l~~L~~L~l~~n-~l~~i~ 77 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAI-PSNIP-----ADTKKLDLQSN-KLSSLPSKA---------FHRLTKLRLLYLNDN-KLQTLP 77 (270)
T ss_dssp TTTTEEECTTS-CCSSC-CSCCC-----TTCSEEECCSS-CCSCCCTTS---------SSSCTTCCEEECCSS-CCSCCC
T ss_pred CCCCEEEccCC-CCCcc-CCCCC-----CCCCEEECcCC-CCCeeCHHH---------hcCCCCCCEEECCCC-ccCeeC
Confidence 45778888875 45554 54332 46888888887 455554321 256788888888764 556665
Q ss_pred cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
... +..+++|++|+++++ .+..++...+ ..+++|++|+++++.+
T Consensus 78 ~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-----~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 78 AGI--FKELKNLETLWVTDN-KLQALPIGVF-----DQLVNLAELRLDRNQL 121 (270)
T ss_dssp TTT--TSSCTTCCEEECCSS-CCCCCCTTTT-----TTCSSCCEEECCSSCC
T ss_pred hhh--hcCCCCCCEEECCCC-cCCcCCHhHc-----ccccCCCEEECCCCcc
Confidence 542 456778888888777 4555554432 2466666666665544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=4.5e-13 Score=127.59 Aligned_cols=201 Identities=15% Similarity=0.086 Sum_probs=131.8
Q ss_pred cCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-eccccccCCCcCccccc
Q 039042 274 FPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDWLPKEKVENGMEV 352 (526)
Q Consensus 274 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~ 352 (526)
.++|++|+++++.+.. +.......+++|++|++++|. ++ .++...+..+++|++|+++ +....++...+ ..++
T Consensus 27 ~~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 100 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE-IQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLS 100 (276)
T ss_dssp CTTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCC-CC--EECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCT
T ss_pred CCCccEEECCCCcccc-cCHhHhccccCCcEEECCCCc-CC--ccCHHHccCCcCCCEEECCCCccCccChhhh--cCCc
Confidence 3578899988776632 111123356788888888874 33 3455567778888888888 33433443333 5678
Q ss_pred cceEEEec-cCceeeccccccccCcccEEEEeccCCcc-cccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc--
Q 039042 353 IIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLI-NLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR-- 428 (526)
Q Consensus 353 ~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-- 428 (526)
+|++|++. +.+..+....+..+++|++|+++++.... .+|..+..+++|++|+++++ +++.++. ..+..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~l 178 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC-TDLRVLHQMPLL 178 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG-GGGHHHHTCTTC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH-HHhhhhhhcccc
Confidence 88888888 77777776677788888888888775433 24556677788888888877 5665542 2334445555
Q ss_pred --EEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecC
Q 039042 429 --EMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDC 497 (526)
Q Consensus 429 --~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C 497 (526)
+|+++++ .+..++.... ...+|++|+++++ .++.++... +..+++|++|+++++
T Consensus 179 ~l~L~ls~n-~l~~~~~~~~------------~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLN-PMNFIQPGAF------------KEIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSS-CCCEECTTSS------------CSCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSS
T ss_pred ceeeecCCC-cccccCcccc------------CCCcccEEECCCC-ceeecCHhH-hcccccccEEEccCC
Confidence 7777774 4555544321 2347888888874 477776653 566788888888864
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=4.9e-13 Score=127.35 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=14.9
Q ss_pred cccEEEEeccCCcccccCC-CccCCCcCEEEEcc
Q 039042 376 NLVILHVTNCHRLINLVPS-STSFQNLTSLEISY 408 (526)
Q Consensus 376 ~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~ 408 (526)
+|+.|+++++. +..++.. +..+++|+.|++++
T Consensus 201 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 201 RLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred cccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 45555555443 3333332 23455555555554
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=4.8e-13 Score=126.94 Aligned_cols=198 Identities=15% Similarity=0.095 Sum_probs=115.7
Q ss_pred CCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhh
Q 039042 245 PSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQ 324 (526)
Q Consensus 245 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 324 (526)
.+.+.+++++. .++.+|..+ .+++++|+++++.+.. +..-....+++|++|+++++. ++ .++...+.
T Consensus 16 ~~~~~l~~~~~-~l~~ip~~~--------~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~--~i~~~~~~ 82 (270)
T 2o6q_A 16 NNKNSVDCSSK-KLTAIPSNI--------PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNK-LQ--TLPAGIFK 82 (270)
T ss_dssp TTTTEEECTTS-CCSSCCSCC--------CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSC-CS--CCCTTTTS
T ss_pred CCCCEEEccCC-CCCccCCCC--------CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCc-cC--eeChhhhc
Confidence 35677887766 566666442 3578888888766532 111112356778888887754 33 35555566
Q ss_pred cCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCC-CccCCCc
Q 039042 325 RFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPS-STSFQNL 401 (526)
Q Consensus 325 ~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L 401 (526)
.+++|++|+++.+ ...++...+ ..+++|++|++. +.+..+++..+..+++|++|+++++. +..++.. +..+++|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSL 159 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccc
Confidence 7777777777733 333333332 455677777777 66666666666667777777777663 3344332 4556677
Q ss_pred CEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCc
Q 039042 402 TSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLK 472 (526)
Q Consensus 402 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 472 (526)
++|+++++ .++.++. ..+..+++|++|+++++ .+..++.. .+..+++|+.|++.+++
T Consensus 160 ~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-----------~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYNN-QLKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEG-----------AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT-----------TTTTCTTCCEEECCSSC
T ss_pred ceeEecCC-cCcEeCh-hHhccCCCcCEEECCCC-cCCcCCHH-----------HhccccCCCEEEecCCC
Confidence 77777665 4555442 23445666777777664 34444332 12235666677666643
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=6.6e-13 Score=128.51 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+++|++|++++|. ++.+ | . ++.+++|++|++++| .+..++. + ..+++|++|+++++ .++.
T Consensus 39 ~l~~L~~L~l~~~~-i~~l-~-~---~~~l~~L~~L~L~~n-~i~~~~~-~----------~~l~~L~~L~L~~n-~l~~ 99 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTI-E-G---VQYLNNLIGLELKDN-QITDLAP-L----------KNLTKITELELSGN-PLKN 99 (308)
T ss_dssp HHHTCCEEECTTSC-CCCC-T-T---GGGCTTCCEEECCSS-CCCCCGG-G----------TTCCSCCEEECCSC-CCSC
T ss_pred HcCCcCEEEeeCCC-ccCc-h-h---hhccCCCCEEEccCC-cCCCChh-H----------ccCCCCCEEEccCC-cCCC
Confidence 45666666666653 3332 3 2 225666666666665 4443332 1 45666666666654 3444
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL 313 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 313 (526)
++ . +..+++|++|++++| .+..++. + ..+++|++|++++|.+.. + .+...+++|++|++++|..
T Consensus 100 ~~-~---~~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~l~~n~l- 163 (308)
T 1h6u_A 100 VS-A---IAGLQSIKTLDLTST-QITDVTP-L------AGLSNLQVLYLDLNQITN-I--SPLAGLTNLQYLSIGNAQV- 163 (308)
T ss_dssp CG-G---GTTCTTCCEEECTTS-CCCCCGG-G------TTCTTCCEEECCSSCCCC-C--GGGGGCTTCCEEECCSSCC-
T ss_pred ch-h---hcCCCCCCEEECCCC-CCCCchh-h------cCCCCCCEEECCCCccCc-C--ccccCCCCccEEEccCCcC-
Confidence 42 1 445666666666666 3444432 1 345666666666554421 1 1133455566666655532
Q ss_pred cccccchhHhhcCCCccEEEEe
Q 039042 314 TTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 314 ~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
+ .++. +..+++|+.|+++
T Consensus 164 ~--~~~~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 164 S--DLTP--LANLSKLTTLKAD 181 (308)
T ss_dssp C--CCGG--GTTCTTCCEEECC
T ss_pred C--CChh--hcCCCCCCEEECC
Confidence 2 1221 4455555555555
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1.8e-14 Score=141.41 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=97.4
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceec-CCcccccccccccccEEeeecccccc-EEEeecc
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCL-FSSCTVSNNSFVRLQYIRIEKCHVLE-ELIVVDN 205 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~p~~l~~l~~l~~L~~L~l~~~~~l~-~l~~~~~ 205 (526)
++++.|++++|.+...... +..+++|++|++++|. +... .|..+. .+++|++|++++|. +. ..+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~-l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~~~-- 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSV-IEVSTLHGILS---QCSKLQNLSLEGLR-LSDPIVNT-- 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCE-ECHHHHHHHHT---TBCCCSEEECTTCB-CCHHHHHH--
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCC-cCHHHHHHHHh---hCCCCCEEeCcCcc-cCHHHHHH--
Confidence 6677777777766544322 2367778888887765 3221 233332 67778888887773 32 11111
Q ss_pred hhhhcccccccccccceeecccCccccc--cccCcccccCCCCccEEEeccCCCcee--ccccccCCccccccC-CcceE
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTS--FCTGDVHMLEFPSLKELWISRCPEFMV--RFKRTTNDLTKKVFP-NLEEL 280 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~l~-~L~~L 280 (526)
+..+++|++|++++|..++. ++.. +..+++|++|++++|..++. ++..+ ..++ +|++|
T Consensus 138 --------l~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~------~~l~~~L~~L 200 (336)
T 2ast_B 138 --------LAKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAV------AHVSETITQL 200 (336)
T ss_dssp --------HTTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHHHHHHH------HHSCTTCCEE
T ss_pred --------HhcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHHHHHHH------HhcccCCCEE
Confidence 24577777777777655553 3322 55677777777777755543 22211 3566 77777
Q ss_pred EEeecc--ccccceecc--ccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042 281 IVDAEY--IITNKFIFS--EDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 281 ~l~~~~--~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
++++|. +.+ ..++ ...+++|++|++++|..++ ......+..+++|++|++.
T Consensus 201 ~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 201 NLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp ECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCC
Confidence 777552 221 1111 1245667777777666444 1112244555666666665
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=7.2e-14 Score=137.14 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=51.6
Q ss_pred hhhhcccccccccccccccccccccC--CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE--EEeecc
Q 039042 130 LEKLELRSINIERIWRNQVAAMTCGI--QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE--LIVVDN 205 (526)
Q Consensus 130 L~~L~L~~~~l~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~--l~~~~~ 205 (526)
++.++++++.+.+.. +..+ ++++.|++.++. +....+. +. .+++|++|++++|. +.. ++..
T Consensus 49 ~~~l~l~~~~~~~~~-------~~~~~~~~l~~L~l~~n~-l~~~~~~-~~---~~~~L~~L~L~~~~-l~~~~~~~~-- 113 (336)
T 2ast_B 49 WQTLDLTGKNLHPDV-------TGRLLSQGVIAFRCPRSF-MDQPLAE-HF---SPFRVQHMDLSNSV-IEVSTLHGI-- 113 (336)
T ss_dssp SSEEECTTCBCCHHH-------HHHHHHTTCSEEECTTCE-ECSCCCS-CC---CCBCCCEEECTTCE-ECHHHHHHH--
T ss_pred heeeccccccCCHHH-------HHhhhhccceEEEcCCcc-ccccchh-hc---cCCCCCEEEccCCC-cCHHHHHHH--
Confidence 556666666544211 2233 666777776653 3332222 22 46667777776663 211 1111
Q ss_pred hhhhcccccccccccceeecccCcccc-ccccCcccccCCCCccEEEeccCCCce
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLT-SFCTGDVHMLEFPSLKELWISRCPEFM 259 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~l~~L~~L~l~~c~~l~ 259 (526)
+..+++|++|++++|. +. ..+.. +..+++|++|++++|..++
T Consensus 114 --------~~~~~~L~~L~L~~~~-l~~~~~~~---l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 114 --------LSQCSKLQNLSLEGLR-LSDPIVNT---LAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp --------HTTBCCCSEEECTTCB-CCHHHHHH---HTTCTTCSEEECTTCBSCC
T ss_pred --------HhhCCCCCEEeCcCcc-cCHHHHHH---HhcCCCCCEEECCCCCCCC
Confidence 1456666666666653 22 22222 4456666666666664444
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=2e-13 Score=129.74 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=123.3
Q ss_pred ccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceec
Q 039042 182 SFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVR 261 (526)
Q Consensus 182 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 261 (526)
.+++|++|++.++ .+..++. +..+++|++|+++++ .+..++ . +..+++|++|++++| .+..+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~-----------l~~l~~L~~L~l~~n-~l~~~~-~---l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQG-----------IQYLPNVRYLALGGN-KLHDIS-A---LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTT-----------GGGCTTCCEEECTTS-CCCCCG-G---GTTCTTCCEEECTTS-CCCCC
T ss_pred cccceeeeeeCCC-Ccccccc-----------cccCCCCcEEECCCC-CCCCch-h---hcCCCCCCEEECCCC-ccCcc
Confidence 6777888888776 4444321 156777888888764 345442 2 557777788887777 55555
Q ss_pred cccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe-ecccc
Q 039042 262 FKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE-GYSDW 340 (526)
Q Consensus 262 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~-~~~~~ 340 (526)
++..+ ..+++|++|++++|.+. .++...+..+++|++|++. +....
T Consensus 101 ~~~~~-----~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 101 PNGVF-----DKLTNLKELVLVENQLQ----------------------------SLPDGVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CTTTT-----TTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ChhHh-----cCCcCCCEEECCCCcCC----------------------------ccCHHHhccCCCCCEEECCCCccCc
Confidence 54432 24666666666655442 1222233444445555544 22222
Q ss_pred ccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccch
Q 039042 341 LPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTF 418 (526)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~ 418 (526)
++...+ ..+++|++|++. +.+..+++..+..+++|+.|++++|. +..+++ .+..+++|+.|++++++-.
T Consensus 148 ~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------ 218 (272)
T 3rfs_A 148 LPKGVF--DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------ 218 (272)
T ss_dssp CCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC------
T ss_pred cCHHHh--ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc------
Confidence 222221 345667777777 67777777778889999999999985 444444 4578999999999987421
Q ss_pred HHHhhcccccEEEEccccccceecccc
Q 039042 419 SIAKTLVRLREMKIESCAMITEIVLAD 445 (526)
Q Consensus 419 ~~~~~l~~L~~L~i~~c~~l~~~~~~~ 445 (526)
+.+++|+.++++.+.....+|...
T Consensus 219 ---~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 219 ---CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp ---CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred ---ccCcHHHHHHHHHHhCCCcccCcc
Confidence 234667777777655455565543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=1.2e-12 Score=126.78 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=88.8
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.+- + +..+++|++|++++|. ++.+ |. ++.+++|++|++++| .+..++.
T Consensus 84 l~~L~~L~L~~n~l~~~~-----~-~~~l~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~l~~n-~l~~~~~---- 146 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVS-----A-IAGLQSIKTLDLTSTQ-ITDV-TP----LAGLSNLQVLYLDLN-QITNISP---- 146 (308)
T ss_dssp CCSCCEEECCSCCCSCCG-----G-GTTCTTCCEEECTTSC-CCCC-GG----GTTCTTCCEEECCSS-CCCCCGG----
T ss_pred CCCCCEEEccCCcCCCch-----h-hcCCCCCCEEECCCCC-CCCc-hh----hcCCCCCCEEECCCC-ccCcCcc----
Confidence 667777777777666541 1 4467777777777764 4433 32 236777777777776 4444322
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++. +..+++|++|++++| .+..++. + ..+++|++|++++|.
T Consensus 147 -------l~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~~n-~l~~~~~-l------~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 147 -------LAGLTNLQYLSIGNA-QVSDLTP----LANLSKLTTLKADDN-KISDISP-L------ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp -------GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCCGG-G------GGCTTCCEEECTTSC
T ss_pred -------ccCCCCccEEEccCC-cCCCChh----hcCCCCCCEEECCCC-ccCcChh-h------cCCCCCCEEEccCCc
Confidence 146777777777764 4444432 446777777777777 4555543 1 357777777777666
Q ss_pred ccccceeccccccccccEEEeeeCC
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (526)
+.. +. +...+++|+.|++++|+
T Consensus 207 l~~-~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 207 ISD-VS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCB-CG--GGTTCTTCCEEEEEEEE
T ss_pred cCc-cc--cccCCCCCCEEEccCCe
Confidence 532 11 34456777777777755
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=1.9e-12 Score=121.44 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=97.8
Q ss_pred ceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhhhh
Q 039042 53 LELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKLEK 132 (526)
Q Consensus 53 L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L~~ 132 (526)
.+.+++++.+...+|..+ .++++.|++++|.....+...+.+ +++|++
T Consensus 16 ~~~l~~~~~~l~~~p~~~----~~~l~~L~L~~n~l~~~~~~~~~~----------------------------l~~L~~ 63 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRG----------------------------LTKLTW 63 (251)
T ss_dssp GTEEECTTCCCSSCCSCC----CTTCCEEECTTSCCCCCCTTTTTT----------------------------CTTCCE
T ss_pred CeEEecCCCCccccCCCC----CCCCCEEEccCCCcCccCHhHhcC----------------------------cccCCE
Confidence 344555555666666532 256777777777655543322222 566677
Q ss_pred hcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhccc
Q 039042 133 LELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKN 212 (526)
Q Consensus 133 L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 212 (526)
|++++|.++.+... . +..+++|++|++++|. ++.+++..+. .+++|++|++++| .+..++...
T Consensus 64 L~L~~n~l~~~~~~---~-~~~l~~L~~L~L~~n~-l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~-------- 126 (251)
T 3m19_A 64 LNLDYNQLQTLSAG---V-FDDLTELGTLGLANNQ-LASLPLGVFD---HLTQLDKLYLGGN-QLKSLPSGV-------- 126 (251)
T ss_dssp EECTTSCCCCCCTT---T-TTTCTTCCEEECTTSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--------
T ss_pred EECCCCcCCccCHh---H-hccCCcCCEEECCCCc-ccccChhHhc---ccCCCCEEEcCCC-cCCCcChhH--------
Confidence 77777766543211 1 3456777777777653 4444333333 5677777777776 454443321
Q ss_pred ccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 213 NIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 213 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+..+++|++|+++++ .++.++... +..+++|++|++++| .+..+++..+ ..+++|+.|++++|.+
T Consensus 127 -~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 127 -FDRLTKLKELRLNTN-QLQSIPAGA--FDKLTNLQTLSLSTN-QLQSVPHGAF-----DRLGKLQTITLFGNQF 191 (251)
T ss_dssp -TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSCCB
T ss_pred -hccCCcccEEECcCC-cCCccCHHH--cCcCcCCCEEECCCC-cCCccCHHHH-----hCCCCCCEEEeeCCce
Confidence 135666777777663 555555432 556667777777666 4555554322 2456666666665433
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=124.91 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=43.7
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+++|++|++++|... ...|..+.. +.+++|++|++++|. +....... .. ..+..+++|++|+++++ .+..
T Consensus 89 ~~~~L~~L~l~~n~l~-~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~~~~~~----~~-~~~~~~~~L~~L~Ls~n-~l~~ 159 (310)
T 4glp_A 89 AYSRLKELTLEDLKIT-GTMPPLPLE-ATGLALSSLRLRNVS-WATGRSWL----AE-LQQWLKPGLKVLSIAQA-HSPA 159 (310)
T ss_dssp HHSCCCEEEEESCCCB-SCCCCCSSS-CCCBCCSSCEEESCC-CSSTTSSH----HH-HHTTBCSCCCEEEEECC-SSCC
T ss_pred ccCceeEEEeeCCEec-cchhhhhhh-ccCCCCCEEEeeccc-ccchhhhh----HH-HHhhhccCCCEEEeeCC-Ccch
Confidence 3456777777776433 233444310 267777777777763 32100000 00 00123556666666553 3333
Q ss_pred cccCcccccCCCCccEEEeccC
Q 039042 234 FCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c 255 (526)
++... +..+++|++|++++|
T Consensus 160 ~~~~~--~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 160 FSCEQ--VRAFPALTSLDLSDN 179 (310)
T ss_dssp CCTTS--CCCCTTCCEEECCSC
T ss_pred hhHHH--hccCCCCCEEECCCC
Confidence 33221 445555666665555
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=4.9e-13 Score=133.88 Aligned_cols=98 Identities=8% Similarity=0.028 Sum_probs=51.6
Q ss_pred cccCCcccEEEeccCCCceecCCccccc-ccccccccEEeeeccccccEEEeecc-hhhhcccccccccccceeecccCc
Q 039042 152 TCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSFVRLQYIRIEKCHVLEELIVVDN-QEEERKNNIVMFPQLQYLKMYDLE 229 (526)
Q Consensus 152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 229 (526)
+..+++|++|++++|. ++...+..++. +..+++|++|++++| .+..+..... +.......+..+++|++|+++++
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 4567889999998874 33222222111 336888888888887 2222211100 00000111245677777777764
Q ss_pred cccc-----cccCcccccCCCCccEEEeccC
Q 039042 230 KLTS-----FCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 230 ~l~~-----~~~~~~~~~~l~~L~~L~l~~c 255 (526)
.+.. ++.. +..+++|++|++++|
T Consensus 105 ~l~~~~~~~l~~~---l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 105 AFGPTAQEPLIDF---LSKHTPLEHLYLHNN 132 (386)
T ss_dssp CCCTTTHHHHHHH---HHHCTTCCEEECCSS
T ss_pred cCCHHHHHHHHHH---HHhCCCCCEEECcCC
Confidence 3333 2222 456677777777766
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=7.5e-12 Score=121.21 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=108.1
Q ss_pred ccccceEEEec-cCceeeccccccccCcccEEEEeccCCccc--ccC--CCccCCCcCEEEEccCCCcccccch--HHHh
Q 039042 350 MEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLIN--LVP--SSTSFQNLTSLEISYCNGLKNVLTF--SIAK 422 (526)
Q Consensus 350 ~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~ 422 (526)
.+++|++|++. +.+..+++..+..+++|++|++++|..... ++. ....+++|++|++++| +++.++.. ...+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 34566666666 667777677788889999999999865431 222 2357889999999988 56654421 1346
Q ss_pred hcccccEEEEcccccccee-cccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCcc
Q 039042 423 TLVRLREMKIESCAMITEI-VLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMK 501 (526)
Q Consensus 423 ~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~ 501 (526)
.+++|++|+++++. +... |..... ...+++|++|+++++ .++.+|... +++|++|++++| +++
T Consensus 222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~---------~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N-~l~ 285 (310)
T 4glp_A 222 AGVQPHSLDLSHNS-LRATVNPSAPR---------CMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSN-RLN 285 (310)
T ss_dssp HTCCCSSEECTTSC-CCCCCCSCCSS---------CCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSC-CCC
T ss_pred cCCCCCEEECCCCC-CCccchhhHHh---------ccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCC-cCC
Confidence 78999999999965 5544 433221 123479999999884 677887752 489999999986 577
Q ss_pred ccCCCCCCCcccceEEec
Q 039042 502 GFSRGELSTPVLHKVQLN 519 (526)
Q Consensus 502 ~l~~~~~~~~~L~~l~l~ 519 (526)
.+|. ...+++|+.|+++
T Consensus 286 ~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 286 RAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp SCCC-TTSCCCCSCEECS
T ss_pred CCch-hhhCCCccEEECc
Confidence 7765 4557999999987
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=4.7e-13 Score=134.05 Aligned_cols=249 Identities=16% Similarity=0.093 Sum_probs=131.5
Q ss_pred HHhccccccceecccccccccccc-ccc--ccccCCcccEEEEecCCCCCC----chhhhhhccCcccccccccchhhhc
Q 039042 44 ILQLQGIEDLELHELQEQDVNYFA-NEL--VRVGSSQLKFLGIHGCRDALN----PSAESKRQRQEESANDMQSNELILE 116 (526)
Q Consensus 44 ~~~l~~~~~L~~l~l~~~~~~~~~-~~~--~~~~l~~L~~L~L~~c~~~~~----p~~~l~~l~~L~~i~~~~~l~~~~~ 116 (526)
...+....+|+.++++++.+.... ..+ ....+++|++|++++|..... |..+ ..+.
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~----------------~~l~- 87 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL----------------RLLL- 87 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH----------------HHHH-
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH----------------HHHH-
Confidence 345556667777777776554421 111 133577888888887754322 2211 0000
Q ss_pred ccccccchhhhhhhhhhccccccccccccc-ccccccccCCcccEEEeccCCCceecCCccccc-cccc---------cc
Q 039042 117 DNANISNTLFLEKLEKLELRSINIERIWRN-QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVS-NNSF---------VR 185 (526)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~-l~~l---------~~ 185 (526)
..+..+++|++|+|++|.+...... .+.. +..+++|++|++++|.. +...+..++. +..+ ++
T Consensus 88 -----~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 88 -----QALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp -----HHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred -----HHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 1112267788888888866642111 1222 45778888888888753 2211222221 1123 78
Q ss_pred ccEEeeecccccc--EEEeecchhhhcccccccccccceeecccCccccc-----ccc-CcccccCCCCccEEEeccCCC
Q 039042 186 LQYIRIEKCHVLE--ELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS-----FCT-GDVHMLEFPSLKELWISRCPE 257 (526)
Q Consensus 186 L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~-~~~~~~~l~~L~~L~l~~c~~ 257 (526)
|++|++++|. +. .++. ....+..+++|++|++++| .+.. +.. . +..+++|++|++++|.
T Consensus 161 L~~L~L~~n~-l~~~~~~~-------l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~---l~~~~~L~~L~Ls~n~- 227 (386)
T 2ca6_A 161 LRSIICGRNR-LENGSMKE-------WAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEG---LAYCQELKVLDLQDNT- 227 (386)
T ss_dssp CCEEECCSSC-CTGGGHHH-------HHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTT---GGGCTTCCEEECCSSC-
T ss_pred CcEEECCCCC-CCcHHHHH-------HHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHH---hhcCCCccEEECcCCC-
Confidence 8888888873 32 1110 0011245677888888775 3331 111 2 5577888888888773
Q ss_pred c-----eeccccccCCccccccCCcceEEEeecccccc-ceeccc----cccccccEEEeeeCCcccc--cccchhHhhc
Q 039042 258 F-----MVRFKRTTNDLTKKVFPNLEELIVDAEYIITN-KFIFSE----DLLCKLKCLDVEFVDELTT--ILSLDDFLQR 325 (526)
Q Consensus 258 l-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~----~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~ 325 (526)
+ ..++..+ ..+++|++|++++|.+... ...++. +.+++|++|++++|..-.. ..++.....+
T Consensus 228 l~~~g~~~l~~~l------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 228 FTHLGSSALAIAL------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301 (386)
T ss_dssp CHHHHHHHHHHHG------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence 4 3333332 3567788888776665321 011122 2366777777777653210 0133333345
Q ss_pred CCCccEEEEe
Q 039042 326 FPTLKVLQIE 335 (526)
Q Consensus 326 l~~L~~L~l~ 335 (526)
+++|++|++.
T Consensus 302 l~~L~~L~l~ 311 (386)
T 2ca6_A 302 MPDLLFLELN 311 (386)
T ss_dssp CTTCCEEECT
T ss_pred CCCceEEEcc
Confidence 6677777666
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.26 E-value=4.7e-11 Score=111.79 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=28.7
Q ss_pred cccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccC
Q 039042 351 EVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYC 409 (526)
Q Consensus 351 ~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 409 (526)
+++|++|++. +.+..+++..+..+++|+.|+++++. +..+++ .+..+++|+.|+++++
T Consensus 130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 3445555555 45555544445555555666655553 222222 3344555555555554
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=1.7e-11 Score=110.36 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=67.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~~ 205 (526)
+++|++|++++|.++... . +..+++|++|++++|. ++...|..++ .+++|++|++++|. +.. .+..
T Consensus 65 l~~L~~L~l~~n~~~~~~-----~-l~~l~~L~~L~l~~n~-l~~~~~~~l~---~l~~L~~L~Ls~n~-i~~~~~~~-- 131 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-----P-ISGLSNLERLRIMGKD-VTSDKIPNLS---GLTSLTLLDISHSA-HDDSILTK-- 131 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-----G-GTTCTTCCEEEEECTT-CBGGGSCCCT---TCTTCCEEECCSSB-CBGGGHHH--
T ss_pred CCCCCEEEccCCCCCcch-----h-hhcCCCCCEEEeECCc-cCcccChhhc---CCCCCCEEEecCCc-cCcHhHHH--
Confidence 556666666666444321 1 4456667777776653 3322233333 56667777776662 222 1111
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+..+++|++|++++|..+..++ . +..+++|++|++++| .+..++ .+ ..+++|++|++++|
T Consensus 132 --------l~~l~~L~~L~L~~n~~i~~~~-~---l~~l~~L~~L~l~~n-~i~~~~-~l------~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 132 --------INTLPKVNSIDLSYNGAITDIM-P---LKTLPELKSLNIQFD-GVHDYR-GI------EDFPKLNQLYAFSQ 191 (197)
T ss_dssp --------HTTCSSCCEEECCSCTBCCCCG-G---GGGCSSCCEEECTTB-CCCCCT-TG------GGCSSCCEEEECBC
T ss_pred --------HhhCCCCCEEEccCCCCccccH-h---hcCCCCCCEEECCCC-CCcChH-Hh------ccCCCCCEEEeeCc
Confidence 1456666666666654455553 2 446666666666666 344443 11 34566666666655
Q ss_pred cc
Q 039042 286 YI 287 (526)
Q Consensus 286 ~~ 287 (526)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 44
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=2.1e-11 Score=109.63 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=88.5
Q ss_pred hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEeec
Q 039042 126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVVD 204 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~~ 204 (526)
.+++|++|++++|.++.+. + +..+++|++|++++| .++.+ + . ++.+++|++|++++| .+.. .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-----~-l~~l~~L~~L~l~~n-~~~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~~~~- 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-----G-IEYAHNIKDLTINNI-HATNY-N-P---ISGLSNLERLRIMGK-DVTSDKIPN- 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-----T-GGGCTTCSEEEEESC-CCSCC-G-G---GTTCTTCCEEEEECT-TCBGGGSCC-
T ss_pred hcCCccEEeccCCCccChH-----H-HhcCCCCCEEEccCC-CCCcc-h-h---hhcCCCCCEEEeECC-ccCcccChh-
Confidence 4777888888888776542 1 446788888888877 34432 2 3 336778888888877 3332 2222
Q ss_pred chhhhcccccccccccceeecccCccccc-cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042 205 NQEEERKNNIVMFPQLQYLKMYDLEKLTS-FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD 283 (526)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 283 (526)
+..+++|++|+++++ .+.. .+.. +..+++|++|++++|..+..++. + ..+++|+.|+++
T Consensus 108 ---------l~~l~~L~~L~Ls~n-~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~~-l------~~l~~L~~L~l~ 167 (197)
T 4ezg_A 108 ---------LSGLTSLTLLDISHS-AHDDSILTK---INTLPKVNSIDLSYNGAITDIMP-L------KTLPELKSLNIQ 167 (197)
T ss_dssp ---------CTTCTTCCEEECCSS-BCBGGGHHH---HTTCSSCCEEECCSCTBCCCCGG-G------GGCSSCCEEECT
T ss_pred ---------hcCCCCCCEEEecCC-ccCcHhHHH---HhhCCCCCEEEccCCCCccccHh-h------cCCCCCCEEECC
Confidence 256777888888775 3333 3322 55777777777777754555542 2 356677777777
Q ss_pred eccccccceeccccccccccEEEeeeC
Q 039042 284 AEYIITNKFIFSEDLLCKLKCLDVEFV 310 (526)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (526)
+|.+.+ +. +...+++|++|+++++
T Consensus 168 ~n~i~~-~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 168 FDGVHD-YR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TBCCCC-CT--TGGGCSSCCEEEECBC
T ss_pred CCCCcC-hH--HhccCCCCCEEEeeCc
Confidence 665532 11 3334556666666554
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=3.4e-11 Score=115.37 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=45.6
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.+.. +..+++|++|++++|. ++.+ |. ++.+++|++|++++| .+..++.
T Consensus 67 l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~L~~n-~i~~~~~---- 129 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENK-VKDL-SS----LKDLKKLKSLSLEHN-GISDING---- 129 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSC-CCCG-GG----GTTCTTCCEEECTTS-CCCCCGG----
T ss_pred CCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCc-CCCC-hh----hccCCCCCEEECCCC-cCCCChh----
Confidence 4555555555554443311 2245555555555543 3322 21 224555555555555 3333211
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
+..+++|++|+++++ .+..+ .. +..+++|++|++++|
T Consensus 130 -------l~~l~~L~~L~l~~n-~l~~~-~~---l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 130 -------LVHLPQLESLYLGNN-KITDI-TV---LSRLTKLDTLSLEDN 166 (291)
T ss_dssp -------GGGCTTCCEEECCSS-CCCCC-GG---GGGCTTCSEEECCSS
T ss_pred -------hcCCCCCCEEEccCC-cCCcc-hh---hccCCCCCEEEccCC
Confidence 134555555555543 33333 11 334555555555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=8.4e-11 Score=112.61 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=115.2
Q ss_pred ccCCcccEEEEecCCCCCCchhhhhhccCccc--ccccccchhhhcccccccchhhhhhhhhhccccccccccccccccc
Q 039042 73 VGSSQLKFLGIHGCRDALNPSAESKRQRQEES--ANDMQSNELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAA 150 (526)
Q Consensus 73 ~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~--i~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~ 150 (526)
..+++|+.|++++|.....|. +..+++|++ +.++. +..+.. ...+++|++|++++|.++.+. .
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-------l~~l~~L~~L~l~~n~l~~~~-----~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-------LANLKNLGWLFLDENKVKDLS-----S 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-------GTTCTTCCEEECCSSCCCCGG-----G
T ss_pred hhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc-------cccCCCCCEEECCCCcCCCCh-----h
Confidence 346666666666665444443 555666666 44332 222221 223889999999999877641 1
Q ss_pred ccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcc
Q 039042 151 MTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEK 230 (526)
Q Consensus 151 ~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 230 (526)
+..+++|++|++++|. ++.+ + . ++.+++|++|++++| .+..++ . +..+++|++|+++++ .
T Consensus 108 -l~~l~~L~~L~L~~n~-i~~~-~-~---l~~l~~L~~L~l~~n-~l~~~~-~----------l~~l~~L~~L~L~~N-~ 167 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHNG-ISDI-N-G---LVHLPQLESLYLGNN-KITDIT-V----------LSRLTKLDTLSLEDN-Q 167 (291)
T ss_dssp -GTTCTTCCEEECTTSC-CCCC-G-G---GGGCTTCCEEECCSS-CCCCCG-G----------GGGCTTCSEEECCSS-C
T ss_pred -hccCCCCCEEECCCCc-CCCC-h-h---hcCCCCCCEEEccCC-cCCcch-h----------hccCCCCCEEEccCC-c
Confidence 5589999999999974 4443 3 3 347899999999998 555542 1 267899999999985 5
Q ss_pred ccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccc
Q 039042 231 LTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYII 288 (526)
Q Consensus 231 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 288 (526)
+..++. +..+++|+.|++++| .++.++. + ..+++|+.|++++|.+.
T Consensus 168 l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~-l------~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 168 ISDIVP----LAGLTKLQNLYLSKN-HISDLRA-L------AGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCGG----GTTCTTCCEEECCSS-CCCBCGG-G------TTCTTCSEEEEEEEEEE
T ss_pred cccchh----hcCCCccCEEECCCC-cCCCChh-h------ccCCCCCEEECcCCccc
Confidence 565532 558899999999998 6676653 2 46889999999977653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=8.9e-11 Score=123.62 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=54.4
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|+.|+|++|.+..+. . +..+++|+.|+|++|. +..+ + . ++.+++|+.|+|++| .+..++ .
T Consensus 86 l~~L~~L~Ls~N~l~~l~-----~-l~~l~~L~~L~Ls~N~-l~~l-~-~---l~~l~~L~~L~Ls~N-~l~~l~-~--- 148 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDLS-----S-LKDLKKLKSLSLEHNG-ISDI-N-G---LVHLPQLESLYLGNN-KITDIT-V--- 148 (605)
T ss_dssp CTTCCEEECCSSCCCCCT-----T-STTCTTCCEEECTTSC-CCCC-G-G---GGGCTTCSEEECCSS-CCCCCG-G---
T ss_pred CCCCCEEECcCCCCCCCh-----h-hccCCCCCEEEecCCC-CCCC-c-c---ccCCCccCEEECCCC-ccCCch-h---
Confidence 455555555555444321 1 3345555555555543 2222 2 1 224555555555555 333221 1
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|++++| .+..++. +..+++|+.|++++| .+..++. + ..+++|+.|++++|.
T Consensus 149 -------l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N-~i~~l~~-l------~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 149 -------LSRLTKLDTLSLEDN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA-L------AGLKNLDVLELFSQE 208 (605)
T ss_dssp -------GGSCTTCSEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG-G------TTCTTCSEEECCSEE
T ss_pred -------hcccCCCCEEECcCC-cCCCchh----hccCCCCCEEECcCC-CCCCChH-H------ccCCCCCEEEccCCc
Confidence 134555555555543 2333211 234555555555555 3443321 1 245555555555443
Q ss_pred c
Q 039042 287 I 287 (526)
Q Consensus 287 ~ 287 (526)
+
T Consensus 209 l 209 (605)
T 1m9s_A 209 C 209 (605)
T ss_dssp E
T ss_pred C
Confidence 3
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=5.1e-11 Score=125.46 Aligned_cols=166 Identities=16% Similarity=0.200 Sum_probs=119.5
Q ss_pred hhhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeec
Q 039042 125 LFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVD 204 (526)
Q Consensus 125 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~ 204 (526)
..+++|+.|++++|.+..+. + +..+++|+.|+|++|. +..+.| +. .+++|++|+|++| .+..++.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-----~-l~~l~~L~~L~Ls~N~-l~~~~~--l~---~l~~L~~L~Ls~N-~l~~l~~-- 104 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-----G-IQYLPNVTKLFLNGNK-LTDIKP--LT---NLKNLGWLFLDEN-KIKDLSS-- 104 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-----T-GGGCTTCCEEECTTSC-CCCCGG--GG---GCTTCCEEECCSS-CCCCCTT--
T ss_pred hcCCCCCEEECcCCCCCCCh-----H-HccCCCCCEEEeeCCC-CCCChh--hc---cCCCCCEEECcCC-CCCCChh--
Confidence 35888999999998777551 1 5578999999999874 454433 33 7899999999998 5555431
Q ss_pred chhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEee
Q 039042 205 NQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDA 284 (526)
Q Consensus 205 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 284 (526)
+..+++|++|+++++ .+..++ . +..+++|+.|++++| .+..++ .+ ..+++|+.|++++
T Consensus 105 ---------l~~l~~L~~L~Ls~N-~l~~l~-~---l~~l~~L~~L~Ls~N-~l~~l~-~l------~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 105 ---------LKDLKKLKSLSLEHN-GISDIN-G---LVHLPQLESLYLGNN-KITDIT-VL------SRLTKLDTLSLED 162 (605)
T ss_dssp ---------STTCTTCCEEECTTS-CCCCCG-G---GGGCTTCSEEECCSS-CCCCCG-GG------GSCTTCSEEECCS
T ss_pred ---------hccCCCCCEEEecCC-CCCCCc-c---ccCCCccCEEECCCC-ccCCch-hh------cccCCCCEEECcC
Confidence 267889999999875 455552 2 668899999999988 566552 22 4688999999988
Q ss_pred ccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042 285 EYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
|.+.. ..+...+++|+.|++++|.. . .++ .+..+++|+.|++.
T Consensus 163 N~l~~---~~~l~~l~~L~~L~Ls~N~i-~--~l~--~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 163 NQISD---IVPLAGLTKLQNLYLSKNHI-S--DLR--ALAGLKNLDVLELF 205 (605)
T ss_dssp SCCCC---CGGGTTCTTCCEEECCSSCC-C--BCG--GGTTCTTCSEEECC
T ss_pred CcCCC---chhhccCCCCCEEECcCCCC-C--CCh--HHccCCCCCEEEcc
Confidence 77642 22355678899999988754 3 232 57778888888888
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=2.3e-12 Score=134.92 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=75.1
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
..|+.|++++| .++.+ |. ++ .+++|++|++++| .+..+|..+ +.+++|++|+++++ .++.+|
T Consensus 441 ~~L~~L~Ls~n-~l~~l-p~-~~---~l~~L~~L~Ls~N-~l~~lp~~~----------~~l~~L~~L~Ls~N-~l~~lp 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVL-CH-LE---QLLLVTHLDLSHN-RLRALPPAL----------AALRCLEVLQASDN-ALENVD 502 (567)
T ss_dssp TTCSEEECTTS-CCSSC-CC-GG---GGTTCCEEECCSS-CCCCCCGGG----------GGCTTCCEEECCSS-CCCCCG
T ss_pred cCceEEEecCC-CCCCC-cC-cc---ccccCcEeecCcc-cccccchhh----------hcCCCCCEEECCCC-CCCCCc
Confidence 45888999887 45554 64 44 7889999999988 666666544 67888999999874 667776
Q ss_pred cCcccccCCCCccEEEeccCCCceec--cccccCCccccccCCcceEEEeeccc
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMVR--FKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
. ++.+++|+.|++++| +++.+ |..+ ..+++|+.|++++|.+
T Consensus 503 -~---l~~l~~L~~L~Ls~N-~l~~~~~p~~l------~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -G---VANLPRLQELLLCNN-RLQQSAAIQPL------VSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -G---GTTCSSCCEEECCSS-CCCSSSTTGGG------GGCTTCCEEECTTSGG
T ss_pred -c---cCCCCCCcEEECCCC-CCCCCCCcHHH------hcCCCCCEEEecCCcC
Confidence 3 778888888888888 56666 4443 3577788888776655
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=3.2e-12 Score=126.68 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=17.4
Q ss_pred cccCcccEEEEeccC-------CcccccCCCccCCCcCEEEEccC
Q 039042 372 SIMNNLVILHVTNCH-------RLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 372 ~~l~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
..+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 334556666665553 01122223334455555555544
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=4.2e-12 Score=125.86 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=20.4
Q ss_pred cCCcccEEEeccCCCceecCC----cccccccccc-cccEEeeecc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFS----SCTVSNNSFV-RLQYIRIEKC 194 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p----~~l~~l~~l~-~L~~L~l~~~ 194 (526)
..++|++|++++|. ++...+ ..+. .++ +|++|++++|
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~---~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFA---NTPASVTSLNLSGN 61 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHH---TCCTTCCEEECCSS
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHH---hCCCceeEEECcCC
Confidence 34557777777764 443322 2222 455 6777777766
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=1.7e-10 Score=106.35 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=9.1
Q ss_pred CcccEEEEecCCCCCC
Q 039042 76 SQLKFLGIHGCRDALN 91 (526)
Q Consensus 76 ~~L~~L~L~~c~~~~~ 91 (526)
++|++|++++|.....
T Consensus 40 ~~L~~L~Ls~n~i~~~ 55 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL 55 (229)
T ss_dssp TTCSEEECCSSCCCCC
T ss_pred CCCCEEEcCCCccCcc
Confidence 5566666666654443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=9.4e-11 Score=106.35 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=55.2
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+++|++|++++|.++.+ +.+.+..+++|++|++++|. ++.+++..+. .+++|++|++++| .+..++...
T Consensus 51 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~-- 119 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFD---KLTQLKELALNTN-QLQSLPDGV-- 119 (208)
T ss_dssp CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT--
T ss_pred cccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCc-CCccCHhHhc---CccCCCEEEcCCC-cCcccCHhH--
Confidence 55666666666655543 11113356666666666653 3333332222 5666666666665 344333221
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
+..+++|++|+++++ .+..++... +..+++|++|+++++
T Consensus 120 -------~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 120 -------FDKLTQLKDLRLYQN-QLKSVPDGV--FDRLTSLQYIWLHDN 158 (208)
T ss_dssp -------TTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSC
T ss_pred -------hccCCcCCEEECCCC-ccceeCHHH--hccCCCccEEEecCC
Confidence 134566666666653 344444331 445566666666655
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=2.4e-10 Score=104.66 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=67.0
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE 207 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 207 (526)
++|+.|++++|.++.+... . +..+++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++....
T Consensus 32 ~~l~~L~l~~n~i~~i~~~---~-~~~l~~L~~L~Ls~N~-i~~~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~f-- 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPG---A-FSPYKKLRRIDLSNNQ-ISELAPDAFQ---GLRSLNSLVLYGN-KITELPKSLF-- 100 (220)
T ss_dssp TTCCEEECCSSCCCEECTT---S-STTCTTCCEEECCSSC-CCEECTTTTT---TCSSCCEEECCSS-CCCCCCTTTT--
T ss_pred cCCCEEECCCCcCCCcCHh---H-hhCCCCCCEEECCCCc-CCCcCHHHhh---CCcCCCEEECCCC-cCCccCHhHc--
Confidence 4566666666655544211 1 3456666666666643 3444344443 5666666666665 4444433211
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
..+++|++|+++++ .+..++... +..+++|++|+++++ .++.++...+ ..+++|+.|++++|
T Consensus 101 -------~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 101 -------EGLFSLQLLLLNAN-KINCLRVDA--FQDLHNLNLLSLYDN-KLQTIAKGTF-----SPLRAIQTMHLAQN 162 (220)
T ss_dssp -------TTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTT-----TTCTTCCEEECCSS
T ss_pred -------cCCCCCCEEECCCC-CCCEeCHHH--cCCCCCCCEEECCCC-cCCEECHHHH-----hCCCCCCEEEeCCC
Confidence 34566666666653 444443322 445566666666665 4444444322 23555555555544
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=3.4e-10 Score=106.62 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=116.1
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
+.++..++++++.++++. . +..+++|++|++++| .++.+ | . ++.+++|++|++++| .+..++. +
T Consensus 18 l~~l~~l~l~~~~i~~~~---~---~~~l~~L~~L~l~~n-~i~~l-~-~---l~~l~~L~~L~L~~N-~i~~~~~-l-- 81 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV---S---QKELSGVQNFNGDNS-NIQSL-A-G---MQFFTNLKELHLSHN-QISDLSP-L-- 81 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE---C---HHHHTTCSEEECTTS-CCCCC-T-T---GGGCTTCCEEECCSS-CCCCCGG-G--
T ss_pred HHHHHHHHhcCCCccccc---c---hhhcCcCcEEECcCC-Ccccc-h-H---HhhCCCCCEEECCCC-ccCCChh-h--
Confidence 788899999999887663 1 447899999999997 45554 4 3 347899999999998 5665543 2
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
..+++|++|+++++ .++.++.. . . ++|++|++++| .++.++. + ..+++|+.|++++|.
T Consensus 82 --------~~l~~L~~L~L~~N-~l~~l~~~---~-~-~~L~~L~L~~N-~l~~~~~-l------~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 82 --------KDLTKLEELSVNRN-RLKNLNGI---P-S-ACLSRLFLDNN-ELRDTDS-L------IHLKNLEILSIRNNK 139 (263)
T ss_dssp --------TTCSSCCEEECCSS-CCSCCTTC---C-C-SSCCEEECCSS-CCSBSGG-G------TTCTTCCEEECTTSC
T ss_pred --------ccCCCCCEEECCCC-ccCCcCcc---c-c-CcccEEEccCC-ccCCChh-h------cCcccccEEECCCCc
Confidence 67899999999975 66776544 2 2 88999999988 5666542 2 468888888888776
Q ss_pred ccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEe
Q 039042 287 IITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIE 335 (526)
Q Consensus 287 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~ 335 (526)
+.. +. +...+++|++|++++|..-. . ..+..+++|+.|++.
T Consensus 140 i~~-~~--~l~~l~~L~~L~L~~N~i~~---~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 140 LKS-IV--MLGFLSKLEVLDLHGNEITN---T--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CCB-CG--GGGGCTTCCEEECTTSCCCB---C--TTSTTCCCCCEEEEE
T ss_pred CCC-Ch--HHccCCCCCEEECCCCcCcc---h--HHhccCCCCCEEeCC
Confidence 632 21 33456788888887765433 2 355667777777776
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=6.4e-10 Score=115.87 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=70.8
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFC 235 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 235 (526)
.+++.|++++|. ++.+ |..+ +++|++|++++| .+..+| . .+++|++|+++++ .++.+|
T Consensus 59 ~~L~~L~Ls~n~-L~~l-p~~l-----~~~L~~L~Ls~N-~l~~ip-~------------~l~~L~~L~Ls~N-~l~~ip 116 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSL-PDNL-----PPQITVLEITQN-ALISLP-E------------LPASLEYLDACDN-RLSTLP 116 (571)
T ss_dssp TTCSEEECCSSC-CSCC-CSCC-----CTTCSEEECCSS-CCSCCC-C------------CCTTCCEEECCSS-CCSCCC
T ss_pred CCccEEEeCCCC-CCcc-CHhH-----cCCCCEEECcCC-CCcccc-c------------ccCCCCEEEccCC-CCCCcc
Confidence 478888888864 5554 5432 367888888887 565554 2 3677888888774 555554
Q ss_pred cCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCC
Q 039042 236 TGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 236 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (526)
.. . .+|++|++++| .++.+|. .+++|+.|++++|.+. .+|. .+++|++|++++|.
T Consensus 117 ~l----~--~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~l~----~lp~-~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 117 EL----P--ASLKHLDVDNN-QLTMLPE---------LPALLEYINADNNQLT----MLPE-LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CC----C--TTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCS----CCCC-CCTTCCEEECCSSC
T ss_pred hh----h--cCCCEEECCCC-cCCCCCC---------cCccccEEeCCCCccC----cCCC-cCCCcCEEECCCCC
Confidence 31 1 27778887777 4555443 3567777777766552 2333 45666777766654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=3.3e-10 Score=106.69 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=99.4
Q ss_pred ccceecccccccccccccccccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccchhhhcccccccchhhhhhh
Q 039042 51 EDLELHELQEQDVNYFANELVRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNELILEDNANISNTLFLEKL 130 (526)
Q Consensus 51 ~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~~~~~~~~~~~~~~~l~~L 130 (526)
+.+..+++..+.+..++ ....+++|++|++++|.....|. +. .+++|
T Consensus 19 ~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l~~--l~----------------------------~l~~L 65 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG--MQ----------------------------FFTNL 65 (263)
T ss_dssp HHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCCTT--GG----------------------------GCTTC
T ss_pred HHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccchH--Hh----------------------------hCCCC
Confidence 34445555555555544 23467788888888776443331 21 16677
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER 210 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 210 (526)
++|++++|.++.+-. +..+++|++|++++|. ++.+ |. + .. ++|++|++++| .+..++.
T Consensus 66 ~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~-l~~l-~~-~---~~-~~L~~L~L~~N-~l~~~~~-------- 123 (263)
T 1xeu_A 66 KELHLSHNQISDLSP------LKDLTKLEELSVNRNR-LKNL-NG-I---PS-ACLSRLFLDNN-ELRDTDS-------- 123 (263)
T ss_dssp CEEECCSSCCCCCGG------GTTCSSCCEEECCSSC-CSCC-TT-C---CC-SSCCEEECCSS-CCSBSGG--------
T ss_pred CEEECCCCccCCChh------hccCCCCCEEECCCCc-cCCc-Cc-c---cc-CcccEEEccCC-ccCCChh--------
Confidence 777777776665421 3467777888887763 4443 32 1 13 67777777777 4544421
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+..+++|++|+++++ .++.++ . +..+++|++|++++| .+..+ ..+ ..+++|+.|++++|.+
T Consensus 124 ---l~~l~~L~~L~Ls~N-~i~~~~-~---l~~l~~L~~L~L~~N-~i~~~-~~l------~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 124 ---LIHLKNLEILSIRNN-KLKSIV-M---LGFLSKLEVLDLHGN-EITNT-GGL------TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ---GTTCTTCCEEECTTS-CCCBCG-G---GGGCTTCCEEECTTS-CCCBC-TTS------TTCCCCCEEEEEEEEE
T ss_pred ---hcCcccccEEECCCC-cCCCCh-H---HccCCCCCEEECCCC-cCcch-HHh------ccCCCCCEEeCCCCcc
Confidence 256777777777764 455553 2 556777777777777 45544 222 3567777777776654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.05 E-value=6.6e-10 Score=101.66 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=72.8
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchh
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQE 207 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 207 (526)
..+++|++++|.++.+..... +..+++|++|++++|. ++.+.+..+. .+++|++|++++| .+..++...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~---~~~l~~L~~L~L~~N~-i~~i~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~--- 100 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGI---FKKLPQLRKINFSNNK-ITDIEEGAFE---GASGVNEILLTSN-RLENVQHKM--- 100 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCC---GGGCTTCCEEECCSSC-CCEECTTTTT---TCTTCCEEECCSS-CCCCCCGGG---
T ss_pred CCCCEEEcCCCcCCccCchhh---hccCCCCCEEECCCCc-CCEECHHHhC---CCCCCCEEECCCC-ccCccCHhH---
Confidence 345667777776654421111 3466777777777653 4444443433 5677777777776 444443321
Q ss_pred hhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecc
Q 039042 208 EERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 208 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
+..+++|++|+++++ .+..++... +..+++|++|+++++ +++.+++..+ ..+++|+.|++++|.
T Consensus 101 ------~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 101 ------FKGLESLKTLMLRSN-RITCVGNDS--FIGLSSVRLLSLYDN-QITTVAPGAF-----DTLHSLSTLNLLANP 164 (220)
T ss_dssp ------GTTCSSCCEEECTTS-CCCCBCTTS--STTCTTCSEEECTTS-CCCCBCTTTT-----TTCTTCCEEECCSCC
T ss_pred ------hcCCcCCCEEECCCC-cCCeECHhH--cCCCccCCEEECCCC-cCCEECHHHh-----cCCCCCCEEEecCcC
Confidence 145667777777663 445543322 556667777777666 4555533322 245666666666443
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=1.1e-09 Score=106.86 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=61.8
Q ss_pred CCCccEEEEee-ccccccCCCcCccccccceEEEeccCceeeccccccccCccc-EEEEeccCCccccc-CCCccCCCcC
Q 039042 326 FPTLKVLQIEG-YSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNLV-ILHVTNCHRLINLV-PSSTSFQNLT 402 (526)
Q Consensus 326 l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~-~~~~~~~~L~ 402 (526)
+++|+.+++.. ....++...| ..+++|+++.+.+++..++...|..+.+|+ .+++.+ .+..++ ..+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF--~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTF--AQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTT--TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhh--hCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 56666666662 3444444444 556667777776447777777777777777 777765 444443 2455677777
Q ss_pred EEEEccCCCcccccchHHHhhcccccEEE
Q 039042 403 SLEISYCNGLKNVLTFSIAKTLVRLREMK 431 (526)
Q Consensus 403 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 431 (526)
.+++... +++.++. ..+..+++|+.++
T Consensus 301 ~l~l~~n-~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD-KITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS-CCCEECT-TTTCTTCCCCEEE
T ss_pred EEEeCCC-ccCccch-hhhcCCcchhhhc
Confidence 7777543 5555543 2455667777765
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=4.8e-10 Score=110.88 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=84.2
Q ss_pred hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
...++.|+|++|.++.+.... +. .+++|++|+|++| .++.+.|..+. .+++|++|++++| .+..++...
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N-~i~~i~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~- 107 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHN-HLNFISSEAFV---PVPNLRYLDLSSN-HLHTLDEFL- 107 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCSS-CCCEECTTT-
T ss_pred CCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCC-cCCccChhhcc---CCCCCCEEECCCC-cCCcCCHHH-
Confidence 445777888888777653222 22 5778888888775 45555444444 6778888888887 566554422
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+..+++|++|+++++ .+..+.... +..+++|+.|++++| .+..++...+.+ ...+++|+.|++++|
T Consensus 108 --------~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~--~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 108 --------FSDLQALEVLLLYNN-HIVVVDRNA--FEDMAQLQKLYLSQN-QISRFPVELIKD--GNKLPKLMLLDLSSN 173 (361)
T ss_dssp --------TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCSCCGGGTC------CTTCCEEECCSS
T ss_pred --------hCCCcCCCEEECCCC-cccEECHHH--hCCcccCCEEECCCC-cCCeeCHHHhcC--cccCCcCCEEECCCC
Confidence 146777888888764 455553332 667777888888777 566665543210 013667777777766
Q ss_pred cc
Q 039042 286 YI 287 (526)
Q Consensus 286 ~~ 287 (526)
.+
T Consensus 174 ~l 175 (361)
T 2xot_A 174 KL 175 (361)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.04 E-value=6.8e-10 Score=102.28 Aligned_cols=109 Identities=19% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccccc
Q 039042 155 IQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSF 234 (526)
Q Consensus 155 l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 234 (526)
.++|++|++++|. ++.+.|..+. .+++|++|++++| .+..++... +..+++|++|+++++ .++.+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~~~~~---~l~~L~~L~L~~N-~l~~i~~~~---------~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEPGVFD---SLINLKELYLGSN-QLGALPVGV---------FDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCCCCTTT---------TTTCTTCCEEECCSS-CCCCC
T ss_pred CCCCCEEEcCCCc-cCccCHHHhh---CccCCcEEECCCC-CCCCcChhh---------cccCCCcCEEECCCC-cCCcc
Confidence 3555666665543 3333343333 4555666666555 344333221 134555666666553 44444
Q ss_pred ccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 235 CTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 235 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+... +..+++|++|+++++ ++..+|..+ ..+++|++|++++|.+
T Consensus 104 ~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~------~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 104 PSAV--FDRLVHLKELFMCCN-KLTELPRGI------ERLTHLTHLALDQNQL 147 (229)
T ss_dssp CTTT--TTTCTTCCEEECCSS-CCCSCCTTG------GGCTTCSEEECCSSCC
T ss_pred ChhH--hCcchhhCeEeccCC-cccccCccc------ccCCCCCEEECCCCcC
Confidence 4331 345555666666555 444444433 2455555555554444
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.03 E-value=9.1e-10 Score=100.72 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=91.6
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER 210 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 210 (526)
+.++.++++++.+ |.. -.++++.|+++++ .++.+.+..+. .+++|++|++++| .+..+....
T Consensus 14 ~~v~c~~~~l~~i----P~~---l~~~l~~L~l~~n-~i~~i~~~~~~---~l~~L~~L~Ls~N-~i~~~~~~~------ 75 (220)
T 2v9t_B 14 NIVDCRGKGLTEI----PTN---LPETITEIRLEQN-TIKVIPPGAFS---PYKKLRRIDLSNN-QISELAPDA------ 75 (220)
T ss_dssp TEEECTTSCCSSC----CSS---CCTTCCEEECCSS-CCCEECTTSST---TCTTCCEEECCSS-CCCEECTTT------
T ss_pred CEEEcCCCCcCcC----CCc---cCcCCCEEECCCC-cCCCcCHhHhh---CCCCCCEEECCCC-cCCCcCHHH------
Confidence 4556666666655 433 3467888888886 45555444444 6888888888887 555553221
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN 290 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 290 (526)
+..+++|++|+++++ .++.++... +..+++|++|+++++ .+..+++..+ ..+++|+.|++++|.+..
T Consensus 76 ---~~~l~~L~~L~Ls~N-~l~~l~~~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~- 142 (220)
T 2v9t_B 76 ---FQGLRSLNSLVLYGN-KITELPKSL--FEGLFSLQLLLLNAN-KINCLRVDAF-----QDLHNLNLLSLYDNKLQT- 142 (220)
T ss_dssp ---TTTCSSCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCCCCCTTTT-----TTCTTCCEEECCSSCCSC-
T ss_pred ---hhCCcCCCEEECCCC-cCCccCHhH--ccCCCCCCEEECCCC-CCCEeCHHHc-----CCCCCCCEEECCCCcCCE-
Confidence 156788888888874 566666542 456788888888877 5666554433 256777777777665532
Q ss_pred ceeccccccccccEEEeeeCC
Q 039042 291 KFIFSEDLLCKLKCLDVEFVD 311 (526)
Q Consensus 291 ~~~~~~~~~~~L~~L~l~~~~ 311 (526)
+..-....+++|++|++++++
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred ECHHHHhCCCCCCEEEeCCCC
Confidence 111112234566666666554
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.03 E-value=1.2e-09 Score=113.68 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=101.9
Q ss_pred cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042 185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR 264 (526)
Q Consensus 185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 264 (526)
+|+.|++++| .+..+|.. -+++|++|+++++ .++.+| . .+++|++|++++| .++.+|.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~------------l~~~L~~L~Ls~N-~l~~ip-~-----~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN------------LPPQITVLEITQN-ALISLP-E-----LPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC------------CCTTCSEEECCSS-CCSCCC-C-----CCTTCCEEECCSS-CCSCCCC-
T ss_pred CccEEEeCCC-CCCccCHh------------HcCCCCEEECcCC-CCcccc-c-----ccCCCCEEEccCC-CCCCcch-
Confidence 7888888887 56655543 2477888888874 566776 3 4788888888888 6666654
Q ss_pred ccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccC
Q 039042 265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPK 343 (526)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~ 343 (526)
+ .. +|++|++++|.+.. +|. .+++|+.|++++|. ++ .+|. .+++|+.|+++.+ ...+|.
T Consensus 118 l------~~--~L~~L~Ls~N~l~~----lp~-~l~~L~~L~Ls~N~-l~--~lp~----~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 118 L------PA--SLKHLDVDNNQLTM----LPE-LPALLEYINADNNQ-LT--MLPE----LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp C------CT--TCCEEECCSSCCSC----CCC-CCTTCCEEECCSSC-CS--CCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred h------hc--CCCEEECCCCcCCC----CCC-cCccccEEeCCCCc-cC--cCCC----cCCCcCEEECCCCCCCCcch
Confidence 2 12 78888888776532 454 56778888887765 33 2443 3566777776633 333332
Q ss_pred CCcCccccccceEEEec-cCceeeccccccccCcc-------cEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042 344 EKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNL-------VILHVTNCHRLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 344 ~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
+ . ++|++|+++ +.+..++. +.. +| +.|++++| .+..+|..+..+++|+.|+++++
T Consensus 178 --l--~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 178 --L--P--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp --C--C--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred --h--h--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 1 1 556666666 55555443 221 44 55555554 33344444444555555555554
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=6e-10 Score=101.00 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=70.7
Q ss_pred ccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccc
Q 039042 294 FSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQES 371 (526)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~ 371 (526)
+|....++|++|+++++.. + .++...+..+++|++|++..+ ...++...+ ..+++|++|++. +.+..+++..+
T Consensus 22 ~p~~~~~~l~~L~l~~n~l-~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 22 VPTGIPAQTTYLDLETNSL-K--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CCSCCCTTCSEEECCSSCC-C--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCCCcEEEcCCCcc-C--cCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECCCCcCCccCHhHh
Confidence 4444445666666666532 2 234444555666666666632 222332222 344566666666 55665555555
Q ss_pred cccCcccEEEEeccCCcccccCC-CccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccc
Q 039042 372 SIMNNLVILHVTNCHRLINLVPS-STSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESC 435 (526)
Q Consensus 372 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 435 (526)
..+++|++|+++++. +..++.. +..+++|++|+++++ .++.++. ..+..+++|+.|+++++
T Consensus 97 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 97 DKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred cCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence 666666666666653 3333332 345666666666665 4444432 23445566666666664
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.00 E-value=1.5e-09 Score=107.26 Aligned_cols=169 Identities=19% Similarity=0.179 Sum_probs=124.6
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER 210 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 210 (526)
+.+++++++++.+ |.+ -.++++.|+|++| .++.+.+..+.. .+++|++|++++| .+..++...
T Consensus 21 ~~l~c~~~~l~~i----P~~---~~~~l~~L~Ls~N-~l~~l~~~~~~~--~l~~L~~L~L~~N-~i~~i~~~~------ 83 (361)
T 2xot_A 21 NILSCSKQQLPNV----PQS---LPSYTALLDLSHN-NLSRLRAEWTPT--RLTNLHSLLLSHN-HLNFISSEA------ 83 (361)
T ss_dssp TEEECCSSCCSSC----CSS---CCTTCSEEECCSS-CCCEECTTSSSS--CCTTCCEEECCSS-CCCEECTTT------
T ss_pred CEEEeCCCCcCcc----Ccc---CCCCCCEEECCCC-CCCccChhhhhh--cccccCEEECCCC-cCCccChhh------
Confidence 5677888878766 433 4567999999997 566665554432 6899999999998 677776432
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeecccccc
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITN 290 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 290 (526)
+..+++|++|+++++ .+..++... +..+++|++|++++| .+..+++..+ ..+++|++|++++|.+..
T Consensus 84 ---~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~- 150 (361)
T 2xot_A 84 ---FVPVPNLRYLDLSSN-HLHTLDEFL--FSDLQALEVLLLYNN-HIVVVDRNAF-----EDMAQLQKLYLSQNQISR- 150 (361)
T ss_dssp ---TTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCCEECTTTT-----TTCTTCCEEECCSSCCCS-
T ss_pred ---ccCCCCCCEEECCCC-cCCcCCHHH--hCCCcCCCEEECCCC-cccEECHHHh-----CCcccCCEEECCCCcCCe-
Confidence 257899999999985 677776543 678999999999998 5666655433 378999999999887642
Q ss_pred ceeccc------cccccccEEEeeeCCcccccccchhHhhcCCCc--cEEEEe
Q 039042 291 KFIFSE------DLLCKLKCLDVEFVDELTTILSLDDFLQRFPTL--KVLQIE 335 (526)
Q Consensus 291 ~~~~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L--~~L~l~ 335 (526)
+|. ..+++|+.|+++++. ++ .++...+..++.+ +.|.+.
T Consensus 151 ---l~~~~~~~~~~l~~L~~L~L~~N~-l~--~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 151 ---FPVELIKDGNKLPKLMLLDLSSNK-LK--KLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ---CCGGGTC----CTTCCEEECCSSC-CC--CCCHHHHHHSCHHHHTTEECC
T ss_pred ---eCHHHhcCcccCCcCCEEECCCCC-CC--ccCHHHhhhccHhhcceEEec
Confidence 333 247899999999865 44 4676677888774 778887
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.97 E-value=2.2e-09 Score=98.11 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=52.6
Q ss_pred hhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCC
Q 039042 323 LQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQN 400 (526)
Q Consensus 323 l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 400 (526)
+..+++|+.|++..+ ...++...+ ..+++|++|+++ +.+..+++..+..+++|++|+++++..-...+..+..+++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCCEECHHHh--CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 344455555555422 222222222 344555555555 5555555555555566666666655332222334445556
Q ss_pred cCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 401 LTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 401 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
|+.|+++++ +++.+++ ..+..+++|+.|++++
T Consensus 131 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 131 VRLLSLYDN-QITTVAP-GAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSEEECTTS-CCCCBCT-TTTTTCTTCCEEECCS
T ss_pred CCEEECCCC-cCCEECH-HHhcCCCCCCEEEecC
Confidence 666666554 3444422 2344555666666655
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=5.1e-09 Score=102.10 Aligned_cols=292 Identities=11% Similarity=-0.023 Sum_probs=168.8
Q ss_pred hhhhhhhccccc-cccccccccccccccc-CCcccEEEeccCCCce-ecCCcccccccccccccEEeeeccccccEEEee
Q 039042 127 LEKLEKLELRSI-NIERIWRNQVAAMTCG-IQNLTHLTLYNCMNLR-CLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVV 203 (526)
Q Consensus 127 l~~L~~L~L~~~-~l~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~-~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~ 203 (526)
+.+++.|.++++ ...++.. +.. +++|++|+|+++.... .. +.. .++.++.+.+..+ .++..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~------l~~~l~~L~~LdLs~n~i~~~~~-~~~-----~~~~~~~~~~~~~----~I~~~ 87 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRH------LRDEFPSLKVLDISNAEIKMYSG-KAG-----TYPNGKFYIYMAN----FVPAY 87 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHH------HHHSCTTCCEEEEEEEEECCEEE-SSS-----SSGGGCCEEECTT----EECTT
T ss_pred hCceeEEEEeccccHHHHHH------HHHhhccCeEEecCcceeEEecC-ccc-----ccccccccccccc----ccCHH
Confidence 778888888876 2222110 123 7889999998875331 11 111 2333344444333 23322
Q ss_pred cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEe
Q 039042 204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVD 283 (526)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 283 (526)
.+... ......++++|+++++.+ .++.++... +..|++|+.|.+.++ .+..++...+. .+.++..+...
T Consensus 88 aF~~~-~~~~~~g~~~L~~l~L~~--~i~~I~~~a--F~~~~~L~~l~l~~n-~i~~i~~~aF~-----~~~~l~~l~~~ 156 (329)
T 3sb4_A 88 AFSNV-VNGVTKGKQTLEKVILSE--KIKNIEDAA--FKGCDNLKICQIRKK-TAPNLLPEALA-----DSVTAIFIPLG 156 (329)
T ss_dssp TTEEE-ETTEEEECTTCCC-CBCT--TCCEECTTT--TTTCTTCCEEEBCCS-SCCEECTTSSC-----TTTCEEEECTT
T ss_pred Hhccc-ccccccccCCCcEEECCc--cccchhHHH--hhcCcccceEEcCCC-Cccccchhhhc-----CCCceEEecCc
Confidence 11000 000001288899999986 677776654 778899999999877 45556554433 34445444433
Q ss_pred eccc---cccceecccccccccc-EEEeeeCCcccccccchhHhh---cCCCccEEEEeeccccccCCCcCccccccceE
Q 039042 284 AEYI---ITNKFIFSEDLLCKLK-CLDVEFVDELTTILSLDDFLQ---RFPTLKVLQIEGYSDWLPKEKVENGMEVIIRR 356 (526)
Q Consensus 284 ~~~~---~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 356 (526)
.... ...+.......+..|+ .+.+.....+. ...+. ...+++.+.+...........+ ...+++|++
T Consensus 157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l-~~~~~~L~~ 230 (329)
T 3sb4_A 157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE-----DEIMKAGLQPRDINFLTIEGKLDNADFKLI-RDYMPNLVS 230 (329)
T ss_dssp CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH-----HHHHHTTCCGGGCSEEEEEECCCHHHHHHH-HHHCTTCCE
T ss_pred chhhhhccccccccccccccccceeEEecCCCcHH-----HHHhhcccCccccceEEEeeeecHHHHHHH-HHhcCCCeE
Confidence 2111 0111222223444555 44454433322 22222 2445566666532000000000 023689999
Q ss_pred EEec-cCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcC-EEEEccCCCcccccchHHHhhcccccEEEEc
Q 039042 357 VFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLT-SLEISYCNGLKNVLTFSIAKTLVRLREMKIE 433 (526)
Q Consensus 357 L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 433 (526)
+++. +.+..++...|..+.+|+.+++.+. +..++. .+..+++|+ .+++.+ +++.++. ..+..+++|+.+++.
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLAT 305 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEEC
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeC
Confidence 9999 7899999999999999999999875 666654 456788999 999987 6777653 366789999999997
Q ss_pred cccccceecccccCCcccccCCCeeeeCccCeEec
Q 039042 434 SCAMITEIVLADDDDDHDAAKDEVIAFSELNELKL 468 (526)
Q Consensus 434 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 468 (526)
. +.+..+... ++..+++|+.++.
T Consensus 306 ~-n~i~~I~~~-----------aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 G-DKITTLGDE-----------LFGNGVPSKLIYK 328 (329)
T ss_dssp S-SCCCEECTT-----------TTCTTCCCCEEEC
T ss_pred C-CccCccchh-----------hhcCCcchhhhcc
Confidence 6 457777653 3446788998864
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=4.5e-11 Score=125.07 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=73.6
Q ss_pred cccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc
Q 039042 185 RLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR 264 (526)
Q Consensus 185 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 264 (526)
.|+.|++++| .+..+|. + +.+++|++|+++++ .++.+|.. ++.+++|+.|++++| .++.+| .
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~----------~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N-~l~~lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-L----------EQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDN-ALENVD-G 503 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-G----------GGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCG-G
T ss_pred CceEEEecCC-CCCCCcC-c----------cccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCC-CCCCCc-c
Confidence 4777888877 5555543 2 56778888888764 56666655 777888888888877 566665 3
Q ss_pred ccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcccccccc--hhHhhcCCCccEEE
Q 039042 265 TTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDELTTILSL--DDFLQRFPTLKVLQ 333 (526)
Q Consensus 265 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~l~~l~~L~~L~ 333 (526)
+ ..+++|+.|++++|.+......-....+++|+.|++++|+.-. ..+ ...+..+|+|+.|+
T Consensus 504 l------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~--~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 V------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ--EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG--SSSCTTHHHHHCTTCSEEE
T ss_pred c------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC--CccHHHHHHHHCcccCccC
Confidence 3 3577777777776665321001112356667777776655332 111 12233456666553
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.89 E-value=1.5e-09 Score=94.75 Aligned_cols=111 Identities=22% Similarity=0.220 Sum_probs=59.0
Q ss_pred hhhhhhhcccccccc--cccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEee
Q 039042 127 LEKLEKLELRSINIE--RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVV 203 (526)
Q Consensus 127 l~~L~~L~L~~~~l~--~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~ 203 (526)
.++|+.|++++|.++ .+ |.. +..+++|++|++++|. ++.+ .. ++.+++|++|++++| .+.. ++..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i----~~~-~~~l~~L~~L~l~~n~-l~~~--~~---~~~l~~L~~L~Ls~N-~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI----EGL-TAEFVNLEFLSLINVG-LISV--SN---LPKLPKLKKLELSEN-RIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC----SSC-CGGGGGCCEEEEESSC-CCCC--SS---CCCCSSCCEEEEESC-CCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhH----HHH-HHhCCCCCEEeCcCCC-CCCh--hh---hccCCCCCEEECcCC-cCchHHHHH
Confidence 456777777777665 22 221 3456677777777654 3332 22 235666777777666 3333 2222
Q ss_pred cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecc
Q 039042 204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRF 262 (526)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 262 (526)
+ ..+++|++|+++++ .++.++.. ..+..+++|++|++++| .+..++
T Consensus 91 ~----------~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~l~~L~~L~l~~N-~l~~~~ 136 (168)
T 2ell_A 91 A----------EKLPNLTHLNLSGN-KLKDISTL-EPLKKLECLKSLDLFNC-EVTNLN 136 (168)
T ss_dssp H----------HHCTTCCEEECBSS-SCCSSGGG-GGGSSCSCCCEEECCSS-GGGTST
T ss_pred H----------hhCCCCCEEeccCC-ccCcchhH-HHHhcCCCCCEEEeeCC-cCcchH
Confidence 1 24666666666654 45554321 11555666666666666 344443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=1.9e-08 Score=87.60 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=96.7
Q ss_pred cccceEEEec-cCce--eeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhcccc
Q 039042 351 EVIIRRVFRC-YDLK--YILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRL 427 (526)
Q Consensus 351 ~~~L~~L~l~-~~l~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 427 (526)
.++|++|++. +.+. .+ +..+..+++|+.|++++|. +..+ ..+..+++|++|+++++ .+.... +.....+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGL-DMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCC-CHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHH-HHHHhhCCCC
Confidence 3567777777 5565 44 3446778899999999886 5555 56778899999999987 566532 2566678999
Q ss_pred cEEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCC--CCccccCCCccEEeEecCCCccccCC
Q 039042 428 REMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYS--GNRALNFPSLERLLVDDCTNMKGFSR 505 (526)
Q Consensus 428 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~~~L~~L~l~~C~~l~~l~~ 505 (526)
+.|++++| .+..++.. ..+..+++|++|+++++ .+..++. ...+..+++|++|++++|. +..+|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~----------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 98 THLNLSGN-KLKDISTL----------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp CEEECBSS-SCCSSGGG----------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CEEeccCC-ccCcchhH----------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999986 46655421 11336789999999985 5666665 1126678999999999974 555654
Q ss_pred C
Q 039042 506 G 506 (526)
Q Consensus 506 ~ 506 (526)
+
T Consensus 165 ~ 165 (168)
T 2ell_A 165 S 165 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=1.6e-07 Score=93.76 Aligned_cols=123 Identities=6% Similarity=-0.030 Sum_probs=64.8
Q ss_pred cccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-c-----ccccCCCcCccccccceEEEeccCceeecccccccc
Q 039042 301 KLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-S-----DWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIM 374 (526)
Q Consensus 301 ~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~-----~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l 374 (526)
+|+.+.+.. .++ .++...+.++++|+.+.+..+ . ..++...| ..+++|+.+.+.+++..+....|..+
T Consensus 249 ~L~~i~lp~--~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF--~~c~~L~~l~l~~~i~~I~~~aF~~c 322 (401)
T 4fdw_A 249 GITTVKLPN--GVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL--EGCPKLARFEIPESIRILGQGLLGGN 322 (401)
T ss_dssp CCSEEEEET--TCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT--TTCTTCCEECCCTTCCEECTTTTTTC
T ss_pred CccEEEeCC--Ccc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh--hCCccCCeEEeCCceEEEhhhhhcCC
Confidence 455555522 222 344445566666666666522 1 12333333 55666666666655666666777777
Q ss_pred CcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhc-ccccEEEEcc
Q 039042 375 NNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTL-VRLREMKIES 434 (526)
Q Consensus 375 ~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~ 434 (526)
.+|+.+.+... +..+.. .+..+ +|+.+++.+. .+..++.. ....+ .+++.+++..
T Consensus 323 ~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 323 RKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS-SCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred CCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC-CCcccccc-cccCCCCCccEEEeCH
Confidence 77777777432 333332 23444 6777777654 33333221 22233 3566777754
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=8e-09 Score=88.02 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=60.8
Q ss_pred cCCcccEEEeccCCCc-eecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCcccc
Q 039042 154 GIQNLTHLTLYNCMNL-RCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLT 232 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l-~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 232 (526)
..++|+.|++++|... .. .|..+. .+++|++|++++| .+..+ .. +..+++|++|+++++ .+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~-~~~~~~---~l~~L~~L~l~~n-~l~~~-~~----------~~~l~~L~~L~Ls~n-~i~ 77 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGK-LEGLTD---EFEELEFLSTINV-GLTSI-AN----------LPKLNKLKKLELSDN-RVS 77 (149)
T ss_dssp CGGGCSEEECTTCBCBTTB-CCSCCT---TCTTCCEEECTTS-CCCCC-TT----------CCCCTTCCEEECCSS-CCC
T ss_pred CCccCeEEEccCCcCChhH-HHHHHh---hcCCCcEEECcCC-CCCCc-hh----------hhcCCCCCEEECCCC-ccc
Confidence 4577888888887533 13 354433 6788888888877 45444 11 256777777777764 344
Q ss_pred c-cccCcccccCCCCccEEEeccCCCceecc--ccccCCccccccCCcceEEEeecc
Q 039042 233 S-FCTGDVHMLEFPSLKELWISRCPEFMVRF--KRTTNDLTKKVFPNLEELIVDAEY 286 (526)
Q Consensus 233 ~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~ 286 (526)
. ++.. +..+++|++|++++| .+..++ ..+ ..+++|++|++++|.
T Consensus 78 ~~~~~~---~~~l~~L~~L~ls~N-~i~~~~~~~~~------~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 78 GGLEVL---AEKCPNLTHLNLSGN-KIKDLSTIEPL------KKLENLKSLDLFNCE 124 (149)
T ss_dssp SCTHHH---HHHCTTCCEEECTTS-CCCSHHHHGGG------GGCTTCCEEECTTCG
T ss_pred chHHHH---hhhCCCCCEEECCCC-cCCChHHHHHH------hhCCCCCEEeCcCCc
Confidence 4 3333 445677777777776 344432 221 244555555555443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=4.5e-09 Score=89.59 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=91.6
Q ss_pred hhhhhhhcccccccc--cccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccE-EEee
Q 039042 127 LEKLEKLELRSINIE--RIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEE-LIVV 203 (526)
Q Consensus 127 l~~L~~L~L~~~~l~--~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~-l~~~ 203 (526)
.++|+.|++++|.++ .+ |.. +..+++|++|++++|. ++.+ .. ++.+++|++|++++| .+.. ++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~----~~~-~~~l~~L~~L~l~~n~-l~~~--~~---~~~l~~L~~L~Ls~n-~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL----EGL-TDEFEELEFLSTINVG-LTSI--AN---LPKLNKLKKLELSDN-RVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC----CSC-CTTCTTCCEEECTTSC-CCCC--TT---CCCCTTCCEEECCSS-CCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHH----HHH-HhhcCCCcEEECcCCC-CCCc--hh---hhcCCCCCEEECCCC-cccchHHHH
Confidence 688999999999887 33 222 5689999999999984 5543 23 448999999999999 4444 4332
Q ss_pred cchhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc---cccCCccccccCCcceE
Q 039042 204 DNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK---RTTNDLTKKVFPNLEEL 280 (526)
Q Consensus 204 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~~~~~l~~L~~L 280 (526)
+ ..+++|++|+++++ .+..++.. ..+..+++|++|++++| .+...+. ..+ ..+++|+.|
T Consensus 84 ~----------~~l~~L~~L~ls~N-~i~~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~-----~~l~~L~~L 145 (149)
T 2je0_A 84 A----------EKCPNLTHLNLSGN-KIKDLSTI-EPLKKLENLKSLDLFNC-EVTNLNDYRENVF-----KLLPQLTYL 145 (149)
T ss_dssp H----------HHCTTCCEEECTTS-CCCSHHHH-GGGGGCTTCCEEECTTC-GGGGSTTHHHHHH-----HHCTTCCEE
T ss_pred h----------hhCCCCCEEECCCC-cCCChHHH-HHHhhCCCCCEEeCcCC-cccchHHHHHHHH-----HHCCCcccc
Confidence 2 46899999999985 56665421 12778999999999999 5666654 211 357778777
Q ss_pred EEe
Q 039042 281 IVD 283 (526)
Q Consensus 281 ~l~ 283 (526)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 654
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=3.5e-07 Score=91.39 Aligned_cols=144 Identities=10% Similarity=-0.001 Sum_probs=83.9
Q ss_pred cccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042 349 GMEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR 428 (526)
Q Consensus 349 ~~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 428 (526)
..+..++.+.+......+....+..+..++.+...... +. ...+..+.+|+.+.+.. +++.+.. .....+++|+
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-i~--~~~F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~ 323 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-VP--EKTFYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLV 323 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-EC--TTTTTTCTTCCEEEECT--TCCEECT-TTTTTCTTCC
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCcee-ec--ccccccccccccccccc--ccceech-hhhcCCCCCC
Confidence 44556666666655555666666666777766664321 11 01234567777777753 3555542 2455677888
Q ss_pred EEEEccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEecCCCccccCCCCC
Q 039042 429 EMKIESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGFSRGEL 508 (526)
Q Consensus 429 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~ 508 (526)
.+++.. .++.+... ++..+.+|+.+.+.. .++.++... +..|++|+++.+.. .++.......
T Consensus 324 ~i~lp~--~v~~I~~~-----------aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~--~~~~~~~~F~ 385 (394)
T 4fs7_A 324 SIDLPY--LVEEIGKR-----------SFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPK--RLEQYRYDFE 385 (394)
T ss_dssp EECCCT--TCCEECTT-----------TTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEG--GGGGGGGGBC
T ss_pred EEEeCC--cccEEhHH-----------hccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECC--CCEEhhheec
Confidence 887753 34544332 334567888887753 366776654 66788888888864 3444433334
Q ss_pred CCcccceE
Q 039042 509 STPVLHKV 516 (526)
Q Consensus 509 ~~~~L~~l 516 (526)
..++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 45666654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.72 E-value=3e-08 Score=88.53 Aligned_cols=124 Identities=14% Similarity=0.099 Sum_probs=71.0
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEER 210 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 210 (526)
+++++++++++.+ |.+ -.++|++|+++++. ++.+ |..+. .+++|++|++++| .+..++...
T Consensus 13 ~~l~~~~~~l~~i----p~~---~~~~l~~L~L~~n~-i~~i-p~~~~---~l~~L~~L~Ls~N-~i~~i~~~~------ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVL----PKG---IPRDVTELYLDGNQ-FTLV-PKELS---NYKHLTLIDLSNN-RISTLSNQS------ 73 (193)
T ss_dssp TEEECTTSCCSSC----CSC---CCTTCCEEECCSSC-CCSC-CGGGG---GCTTCCEEECCSS-CCCCCCTTT------
T ss_pred CEEEcCCCCCCcC----CCC---CCCCCCEEECCCCc-Cchh-HHHhh---cccCCCEEECCCC-cCCEeCHhH------
Confidence 3556666666654 332 34567777777753 3333 44433 6777777777776 454443221
Q ss_pred ccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 211 KNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 211 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+..+++|++|+++++ .++.++... +..+++|++|+++++ .++.++...+ ..+++|+.|++++|
T Consensus 74 ---f~~l~~L~~L~Ls~N-~l~~i~~~~--f~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 74 ---FSNMTQLLTLILSYN-RLRCIPPRT--FDGLKSLRLLSLHGN-DISVVPEGAF-----NDLSALSHLAIGAN 136 (193)
T ss_dssp ---TTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSS-CCCBCCTTTT-----TTCTTCCEEECCSS
T ss_pred ---ccCCCCCCEEECCCC-ccCEeCHHH--hCCCCCCCEEECCCC-CCCeeChhhh-----hcCccccEEEeCCC
Confidence 145677777777763 455554432 556677777777776 4555555432 24666666666644
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.70 E-value=3.3e-08 Score=88.19 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=64.3
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcc-cccccccccccEEeeeccccccEEEeecchhhh
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSC-TVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE 209 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~-l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 209 (526)
+++++++++++.+ |.. -.+++++|+++++ .++.+.+.. +. .+++|++|++++| .+..+....
T Consensus 11 ~~l~~s~~~l~~i----p~~---~~~~l~~L~l~~n-~i~~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~~~----- 73 (192)
T 1w8a_A 11 TTVDCTGRGLKEI----PRD---IPLHTTELLLNDN-ELGRISSDGLFG---RLPHLVKLELKRN-QLTGIEPNA----- 73 (192)
T ss_dssp TEEECTTSCCSSC----CSC---CCTTCSEEECCSC-CCCSBCCSCSGG---GCTTCCEEECCSS-CCCCBCTTT-----
T ss_pred CEEEcCCCCcCcC----ccC---CCCCCCEEECCCC-cCCccCCccccc---cCCCCCEEECCCC-CCCCcCHhH-----
Confidence 4556666666544 322 2336666666665 344433322 22 5666666666666 344332111
Q ss_pred cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeec
Q 039042 210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAE 285 (526)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 285 (526)
+..+++|++|+++++ .++.++... +..+++|++|+++++ ++..+++..+ ..+++|++|++++|
T Consensus 74 ----~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 ----FEGASHIQELQLGEN-KIKEISNKM--FLGLHQLKTLNLYDN-QISCVMPGSF-----EHLNSLTSLNLASN 136 (192)
T ss_dssp ----TTTCTTCCEEECCSC-CCCEECSSS--STTCTTCCEEECCSS-CCCEECTTSS-----TTCTTCCEEECTTC
T ss_pred ----cCCcccCCEEECCCC-cCCccCHHH--hcCCCCCCEEECCCC-cCCeeCHHHh-----hcCCCCCEEEeCCC
Confidence 145666666666653 445544332 445666666666666 4444433322 24556666666544
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=6.6e-07 Score=89.27 Aligned_cols=261 Identities=10% Similarity=0.065 Sum_probs=150.8
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTS 233 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 233 (526)
.+..++.+.+.+ .++.+...++. .. +|+.+.+..+ +..++...+ .. .+|+.+.+.+ .++.
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~aF~---~~-~L~~i~l~~~--i~~I~~~aF---------~~-~~L~~i~lp~--~l~~ 170 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDAFR---NS-QIAKVVLNEG--LKSIGDMAF---------FN-STVQEIVFPS--TLEQ 170 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTTTT---TC-CCSEEECCTT--CCEECTTTT---------TT-CCCCEEECCT--TCCE
T ss_pred ecCCccEEEECC--ccCEehHhhcc---cC-CccEEEeCCC--ccEECHHhc---------CC-CCceEEEeCC--CccE
Confidence 346666666654 34444333333 32 5777776553 555543221 11 3577777653 4555
Q ss_pred cccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccccccceeccccccccccEEEeeeCCcc
Q 039042 234 FCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYIITNKFIFSEDLLCKLKCLDVEFVDEL 313 (526)
Q Consensus 234 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 313 (526)
+.... +..|++|+.+.+.++ +++.++...+ ...+|+.+.+..+ + ..+..-....+++|+.+++... +
T Consensus 171 I~~~a--F~~c~~L~~l~l~~n-~l~~I~~~aF------~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~--l 237 (401)
T 4fdw_A 171 LKEDI--FYYCYNLKKADLSKT-KITKLPASTF------VYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN--V 237 (401)
T ss_dssp ECSST--TTTCTTCCEEECTTS-CCSEECTTTT------TTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT--C
T ss_pred ehHHH--hhCcccCCeeecCCC-cceEechhhE------eecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC--c
Confidence 54442 556777777777665 5566655442 2467777776522 1 2222223345667777777642 3
Q ss_pred cccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCce-----eeccccccccCcccEEEEeccCC
Q 039042 314 TTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLK-----YILKQESSIMNNLVILHVTNCHR 387 (526)
Q Consensus 314 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~-----~~~~~~~~~l~~L~~L~l~~c~~ 387 (526)
+ .++...+.+ .+|+.+.+......++..+| ..+++|+.+.+. +... .+....|..+++|+.+.+.. .
T Consensus 238 ~--~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~ 310 (401)
T 4fdw_A 238 S--TIGQEAFRE-SGITTVKLPNGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--S 310 (401)
T ss_dssp C--EECTTTTTT-CCCSEEEEETTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--T
T ss_pred c--Ccccccccc-CCccEEEeCCCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--c
Confidence 3 455556666 67888888543444444444 667888888887 3332 57777888888888888873 3
Q ss_pred cccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCeeee-CccCe
Q 039042 388 LINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEVIAF-SELNE 465 (526)
Q Consensus 388 l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~ 465 (526)
+..++. .+..+++|+.+.|.. +++.+... .+..+ +|+.+++.+. ....+... .+..+ ..++.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~-----------~F~~~~~~l~~ 374 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEK-----------VWYGFPDDITV 374 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCS-----------SCCCSCTTCCE
T ss_pred eEEEhhhhhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC-CCcccccc-----------cccCCCCCccE
Confidence 544433 345667888888854 45555432 44556 8888888774 33333322 12233 36777
Q ss_pred EecCC
Q 039042 466 LKLLN 470 (526)
Q Consensus 466 L~l~~ 470 (526)
|++-.
T Consensus 375 l~vp~ 379 (401)
T 4fdw_A 375 IRVPA 379 (401)
T ss_dssp EEECG
T ss_pred EEeCH
Confidence 77754
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=4.5e-08 Score=86.02 Aligned_cols=128 Identities=15% Similarity=0.117 Sum_probs=74.4
Q ss_pred hhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhh
Q 039042 130 LEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEE 209 (526)
Q Consensus 130 L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 209 (526)
.+.+++++++++.+ |.+ ..++|++|+++++. ++.+++..+. .+++|++|++++| .+..++...
T Consensus 9 ~~~l~~~~~~l~~~----p~~---~~~~l~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~~~~----- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV----PTG---IPSSATRLELESNK-LQSLPHGVFD---KLTQLTKLSLSQN-QIQSLPDGV----- 71 (177)
T ss_dssp TTEEECCSSCCSSC----CTT---CCTTCSEEECCSSC-CCCCCTTTTT---TCTTCSEEECCSS-CCCCCCTTT-----
T ss_pred CCEEEecCCCCccC----CCC---CCCCCcEEEeCCCc-ccEeCHHHhc---CcccccEEECCCC-cceEeChhH-----
Confidence 34556666666554 322 34677777777754 4444333333 6777777777776 455443321
Q ss_pred cccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 210 RKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 210 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+..+++|++|+++++ .++.++... +..+++|++|+++++ .++.++...+. .+++|++|++++|.+
T Consensus 72 ----~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 72 ----FDKLTKLTILYLHEN-KLQSLPNGV--FDKLTQLKELALDTN-QLKSVPDGIFD-----RLTSLQKIWLHTNPW 136 (177)
T ss_dssp ----TTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTT-----TCTTCCEEECCSSCB
T ss_pred ----ccCCCccCEEECCCC-CccccCHHH--hhCCcccCEEECcCC-cceEeCHHHhc-----CCcccCEEEecCCCe
Confidence 145677777777763 455555432 456777777777776 55555554322 466666666665543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=3e-08 Score=87.03 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=18.4
Q ss_pred ccccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 215 VMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 215 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
..+++|++|+++++ .+..++... +..+++|++|++++|
T Consensus 61 ~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 61 PLLRRLKTLLVNNN-RICRIGEGL--DQALPDLTELILTNN 98 (176)
T ss_dssp CCCSSCCEEECCSS-CCCEECSCH--HHHCTTCCEEECCSC
T ss_pred ccCCCCCEEECCCC-cccccCcch--hhcCCCCCEEECCCC
Confidence 34555555555543 344443331 244555555555555
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=1.3e-06 Score=87.18 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=71.7
Q ss_pred ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEeccCceeeccccccccCcc
Q 039042 298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRCYDLKYILKQESSIMNNL 377 (526)
Q Consensus 298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~l~~~~~~~~~~l~~L 377 (526)
.+..|+.+.+.... . .+....+..+..++.+..... ..+...+ ..+.+|+.+.+.+++..+....|..+.+|
T Consensus 251 ~~~~l~~~~~~~~~--~--~i~~~~F~~~~~l~~~~~~~~--~i~~~~F--~~~~~L~~i~l~~~i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 251 GCTDLESISIQNNK--L--RIGGSLFYNCSGLKKVIYGSV--IVPEKTF--YGCSSLTEVKLLDSVKFIGEEAFESCTSL 322 (394)
T ss_dssp TCSSCCEEEECCTT--C--EECSCTTTTCTTCCEEEECSS--EECTTTT--TTCTTCCEEEECTTCCEECTTTTTTCTTC
T ss_pred ccccceeEEcCCCc--c--eeeccccccccccceeccCce--eeccccc--cccccccccccccccceechhhhcCCCCC
Confidence 45566666654321 1 233345555666666554411 1222222 45567777777666777777777777888
Q ss_pred cEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEcc
Q 039042 378 VILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIES 434 (526)
Q Consensus 378 ~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 434 (526)
+.+++.. .+..+.. .+..+++|+.+.+.. +++.+.. ..+..+++|+.+++..
T Consensus 323 ~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 323 VSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEEG
T ss_pred CEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEECC
Confidence 8887753 2444432 345667788877753 3555543 3556778888888864
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.66 E-value=4.5e-08 Score=87.35 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecch
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQ 206 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 206 (526)
.++|++|++++|.++.+ |.. +..+++|++|++++|. ++.+.+..+. .+++|++|++++| .+..++...
T Consensus 30 ~~~l~~L~L~~n~i~~i----p~~-~~~l~~L~~L~Ls~N~-i~~i~~~~f~---~l~~L~~L~Ls~N-~l~~i~~~~-- 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLV----PKE-LSNYKHLTLIDLSNNR-ISTLSNQSFS---NMTQLLTLILSYN-RLRCIPPRT-- 97 (193)
T ss_dssp CTTCCEEECCSSCCCSC----CGG-GGGCTTCCEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS-CCCBCCTTT--
T ss_pred CCCCCEEECCCCcCchh----HHH-hhcccCCCEEECCCCc-CCEeCHhHcc---CCCCCCEEECCCC-ccCEeCHHH--
Confidence 56899999999988865 333 6689999999999974 5565555555 7999999999998 566665432
Q ss_pred hhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCC
Q 039042 207 EEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCP 256 (526)
Q Consensus 207 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 256 (526)
+..+++|++|+++++ .+..++... +..+++|+.|++++++
T Consensus 98 -------f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 -------FDGLKSLRLLSLHGN-DISVVPEGA--FNDLSALSHLAIGANP 137 (193)
T ss_dssp -------TTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSSC
T ss_pred -------hCCCCCCCEEECCCC-CCCeeChhh--hhcCccccEEEeCCCC
Confidence 257899999999984 677776653 6679999999999873
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=2.4e-08 Score=87.73 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=91.8
Q ss_pred hhhhhhhcccccccccccccccccccccC-CcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGI-QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
+.+|+.|++++|.++.+. . +..+ ++|++|++++|. ++.+ + . ++.+++|++|++++| .+..++....
T Consensus 18 ~~~L~~L~l~~n~l~~i~--~----~~~~~~~L~~L~Ls~N~-l~~~-~-~---l~~l~~L~~L~Ls~N-~l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE--N----LGATLDQFDAIDFSDNE-IRKL-D-G---FPLLRRLKTLLVNNN-RICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCC--C----GGGGTTCCSEEECCSSC-CCEE-C-C---CCCCSSCCEEECCSS-CCCEECSCHH
T ss_pred cCCceEEEeeCCCCchhH--H----hhhcCCCCCEEECCCCC-CCcc-c-c---cccCCCCCEEECCCC-cccccCcchh
Confidence 788999999999887651 1 2244 499999999974 5554 3 3 448999999999998 6777764321
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceecccc---ccCCccccccCCcceEEE
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFKR---TTNDLTKKVFPNLEELIV 282 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~~~~~l~~L~~L~l 282 (526)
..+++|++|+++++ .+..++.. ..+..+++|+.|++++| .+..++.. .. ..+++|+.|++
T Consensus 85 ---------~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~-----~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 ---------QALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRN-PVTNKKHYRLYVI-----YKVPQVRVLDF 147 (176)
T ss_dssp ---------HHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSS-GGGGSTTHHHHHH-----HHCTTCSEETT
T ss_pred ---------hcCCCCCEEECCCC-cCCcchhh-HhhhcCCCCCEEEecCC-CCCCcHhHHHHHH-----HHCCccceeCC
Confidence 46899999999985 56777651 12778999999999988 45544432 01 35677777776
Q ss_pred eec
Q 039042 283 DAE 285 (526)
Q Consensus 283 ~~~ 285 (526)
+.+
T Consensus 148 ~~n 150 (176)
T 1a9n_A 148 QKV 150 (176)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.63 E-value=6.2e-09 Score=112.33 Aligned_cols=109 Identities=18% Similarity=0.045 Sum_probs=54.9
Q ss_pred cccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccc
Q 039042 152 TCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKL 231 (526)
Q Consensus 152 ~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 231 (526)
+..+++|+.|+|++|.. ..+ |..+. .+++|++|+|++| .+..+|..+ +.+++|++|+++++ .+
T Consensus 220 ~~~l~~L~~L~Ls~n~l-~~l-~~~~~---~l~~L~~L~Ls~N-~l~~lp~~~----------~~l~~L~~L~Ls~N-~l 282 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-FNI-SANIF---KYDFLTRLYLNGN-SLTELPAEI----------KNLSNLRVLDLSHN-RL 282 (727)
T ss_dssp --CCCCCCEEECTTSCC-SCC-CGGGG---GCCSCSCCBCTTS-CCSCCCGGG----------GGGTTCCEEECTTS-CC
T ss_pred hccCCCCcEEECCCCCC-CCC-Chhhc---CCCCCCEEEeeCC-cCcccChhh----------hCCCCCCEEeCcCC-cC
Confidence 33455566666655432 232 33333 4555666666655 344444332 44555666666553 34
Q ss_pred cccccCcccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 232 TSFCTGDVHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+.+|.. ++.+++|++|++++| .+..+|..+ ..+++|+.|++++|.+
T Consensus 283 ~~lp~~---~~~l~~L~~L~L~~N-~l~~lp~~~------~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 283 TSLPAE---LGSCFQLKYFYFFDN-MVTTLPWEF------GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSCCSS---GGGGTTCSEEECCSS-CCCCCCSST------TSCTTCCCEECTTSCC
T ss_pred CccChh---hcCCCCCCEEECCCC-CCCccChhh------hcCCCccEEeCCCCcc
Confidence 455444 555566666666555 445555443 2455555555555544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=1.3e-07 Score=84.28 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=59.4
Q ss_pred cccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccccccCc
Q 039042 299 LCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNN 376 (526)
Q Consensus 299 ~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~ 376 (526)
+++|++|+++++..-. ..+...+..+++|++|+++.+ ...+....+ ..+++|++|+++ +.+..+++..+..+++
T Consensus 28 ~~~l~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 28 PLHTTELLLNDNELGR--ISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp CTTCSEEECCSCCCCS--BCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCCCEEECCCCcCCc--cCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 3355555555543221 111123455666666666622 222222222 455667777776 6777776666777777
Q ss_pred ccEEEEeccCCcccccCCCccCCCcCEEEEccC
Q 039042 377 LVILHVTNCHRLINLVPSSTSFQNLTSLEISYC 409 (526)
Q Consensus 377 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 409 (526)
|++|+++++..-...+..+..+++|++|+++++
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 777777776443333445566677777777665
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.57 E-value=4.6e-08 Score=105.48 Aligned_cols=112 Identities=20% Similarity=0.128 Sum_probs=90.8
Q ss_pred hhhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 126 FLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 126 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
.+..|+.|+|++|.+..+ +.+ +..+++|++|+|++|. ++.+ |..+. .+++|++|+|++| .+..+|..+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l----~~~-~~~l~~L~~L~Ls~N~-l~~l-p~~~~---~l~~L~~L~Ls~N-~l~~lp~~~- 289 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNI----SAN-IFKYDFLTRLYLNGNS-LTEL-PAEIK---NLSNLRVLDLSHN-RLTSLPAEL- 289 (727)
T ss_dssp CCCCCCEEECTTSCCSCC----CGG-GGGCCSCSCCBCTTSC-CSCC-CGGGG---GGTTCCEEECTTS-CCSSCCSSG-
T ss_pred cCCCCcEEECCCCCCCCC----Chh-hcCCCCCCEEEeeCCc-Cccc-Chhhh---CCCCCCEEeCcCC-cCCccChhh-
Confidence 378899999999988765 333 5589999999999975 4454 76665 7999999999999 577776654
Q ss_pred hhhhcccccccccccceeecccCccccccccCcccccCCCCccEEEeccCCCceeccc
Q 039042 206 QEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRCPEFMVRFK 263 (526)
Q Consensus 206 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 263 (526)
+.+++|++|+++++ .++.+|.. ++.+++|++|++++| .+...++
T Consensus 290 ---------~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N-~l~~~~p 333 (727)
T 4b8c_D 290 ---------GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGN-PLEKQFL 333 (727)
T ss_dssp ---------GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTS-CCCSHHH
T ss_pred ---------cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCC-ccCCCCh
Confidence 67999999999985 67888776 889999999999999 4554443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.46 E-value=8.5e-09 Score=92.54 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=15.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccC
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNC 166 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c 166 (526)
+++|++|++++|.++.+ | . +..+++|++|++++|
T Consensus 47 l~~L~~L~ls~n~l~~l----~-~-~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKI----S-S-LSGMENLRILSLGRN 80 (198)
T ss_dssp TTTCSEEECSEEEESCC----C-C-HHHHTTCCEEEEEEE
T ss_pred CCCCCEEECCCCCCccc----c-c-cccCCCCCEEECCCC
Confidence 44455555555544432 1 1 334455555555544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.45 E-value=7.4e-07 Score=78.10 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=55.5
Q ss_pred ccccccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeec-cccccCCCcCccccccceEEEec-cCceeeccccc
Q 039042 294 FSEDLLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGY-SDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQES 371 (526)
Q Consensus 294 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~ 371 (526)
+|...+++|++|+++++. ++ .++...+..+++|++|+++.+ ...++...+ ..+++|++|++. +.+..+++..+
T Consensus 22 ~p~~~~~~l~~L~l~~n~-l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 22 VPTGIPSSATRLELESNK-LQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp CCTTCCTTCSEEECCSSC-CC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCCCcEEEeCCCc-cc--EeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCccCEEECCCCCccccCHHHh
Confidence 344444556666666544 22 234434555666666666522 222222221 344555556555 55555555555
Q ss_pred cccCcccEEEEeccCCcccccCC-CccCCCcCEEEEccC
Q 039042 372 SIMNNLVILHVTNCHRLINLVPS-STSFQNLTSLEISYC 409 (526)
Q Consensus 372 ~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 409 (526)
..+++|++|+++++ .+..++.. +..+++|++|+++++
T Consensus 97 ~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 97 DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 55666666666655 33344333 244556666666554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.35 E-value=2.7e-08 Score=89.19 Aligned_cols=78 Identities=21% Similarity=0.180 Sum_probs=38.5
Q ss_pred ccccceEEEec-cCceeeccccccccCcccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042 350 MEVIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR 428 (526)
Q Consensus 350 ~~~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 428 (526)
.+++|++|+++ +.+..++ .+..+++|+.|++++|. +..+|.....+++|+.|+++++ +++.++ .+..+++|+
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~---~~~~l~~L~ 118 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS---GIEKLVNLR 118 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH---HHHHHHHSS
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC---ccccCCCCC
Confidence 44555566555 4444443 44455555555555542 3334333333455555555554 344432 234455555
Q ss_pred EEEEcc
Q 039042 429 EMKIES 434 (526)
Q Consensus 429 ~L~i~~ 434 (526)
.|++++
T Consensus 119 ~L~l~~ 124 (198)
T 1ds9_A 119 VLYMSN 124 (198)
T ss_dssp EEEESE
T ss_pred EEECCC
Confidence 555555
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.34 E-value=7.2e-07 Score=77.66 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=24.0
Q ss_pred hhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 131 EKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 131 ~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+.+++++++++.+ |.+ -.++|++|++++| .++.+.|..+. .+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~i----p~~---~~~~l~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~Ls~N 64 (170)
T 3g39_A 12 TTVDCSGKSLASV----PTG---IPTTTQVLYLYDN-QITKLEPGVFD---RLTQLTRLDLDNN 64 (170)
T ss_dssp TEEECTTSCCSSC----CSC---CCTTCSEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS
T ss_pred CEEEeCCCCcCcc----Ccc---CCCCCcEEEcCCC-cCCccChhhhc---CcccCCEEECCCC
Confidence 4455555544443 222 2345555555553 23333333333 4555555555554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=1e-06 Score=76.99 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=15.9
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
++|++|++++|. ++.+.|..+. .+++|++|++++|
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFD---HLVNLQQLYFNSN 67 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTT---TCTTCCEEECCSS
T ss_pred CCCcEEEeCCCC-ccccCHHHhc---CCcCCCEEECCCC
Confidence 455555555532 3333333332 4555555555554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.26 E-value=1.2e-06 Score=76.52 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=26.3
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+++|++|+|++|.++.+ +.+.+..+++|++|+|++| .++.+++..+. .+++|++|++++|
T Consensus 56 l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~---~l~~L~~L~L~~N 115 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD---NLKSLTHIYLYNN 115 (174)
T ss_dssp CTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCSEEECCSS
T ss_pred CcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCC-ccceeCHHHhc---cccCCCEEEeCCC
Confidence 44555555555544433 1111234555555555553 23333222222 4555555555554
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=6.5e-07 Score=77.30 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=29.0
Q ss_pred cccEEEEeccCCcccccCCCccCCCcCEEEEccCCCcccccchHHHh---hcccccEEEEccccccc
Q 039042 376 NLVILHVTNCHRLINLVPSSTSFQNLTSLEISYCNGLKNVLTFSIAK---TLVRLREMKIESCAMIT 439 (526)
Q Consensus 376 ~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~i~~c~~l~ 439 (526)
.|+.|++++|.....-...+..+++|++|++++|..+++........ ..++|++|++++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 45666666654211111223445556666666665555543222221 12345555555555443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.24 E-value=1.4e-06 Score=75.75 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=30.1
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+++|++|+|++|.++.+ +.+.+..+++|++|+|++| .++.+++..+. .+++|++|++++|
T Consensus 53 l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~N 112 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDN-QLKSIPRGAFD---NLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCSS
T ss_pred cccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCC-ccCEeCHHHhc---CCCCCCEEEeCCC
Confidence 45556666666655543 1111234566666666654 33443332232 4566666666655
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=8.7e-07 Score=76.53 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=73.6
Q ss_pred ccCCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEEccccccceecccccCCcccccCCCe-eeeCccCeEecC
Q 039042 391 LVPSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKIESCAMITEIVLADDDDDHDAAKDEV-IAFSELNELKLL 469 (526)
Q Consensus 391 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~ 469 (526)
+|.....-..|++|++++|. +++.... .+..+++|++|++++|..+++-....-. .. ...++|++|+++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~--------~~~~~~~~L~~L~Ls 122 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS--------QLENLQKSMLEMEII 122 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH--------TCHHHHHHCCEEEEE
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH--------hcccccCCCCEEEcC
Confidence 34333334579999999996 7776443 4578999999999999877653221100 00 013589999999
Q ss_pred CCccccccCCCCccccCCCccEEeEecCCCcccc
Q 039042 470 NLKSLRSFYSGNRALNFPSLERLLVDDCTNMKGF 503 (526)
Q Consensus 470 ~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l 503 (526)
+|+++++-.... +..+++|++|++++|++++..
T Consensus 123 ~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 123 SCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp SCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCCH
T ss_pred CCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCch
Confidence 999998765553 557899999999999998764
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=0.00051 Score=68.23 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=71.5
Q ss_pred ceEEEeccCceeeccccccccCcccEEEEeccCCccccc-CCCccCCCcCEEEEccCCCcccccchHHHhhcccccEEEE
Q 039042 354 IRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLV-PSSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLREMKI 432 (526)
Q Consensus 354 L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 432 (526)
+..+.+.+.+..+....|..+..|+.+.+.... ..+. ..+..+++|+.+.+.. .++.++. ..+..+++|+.++|
T Consensus 244 ~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 244 DPAFKIPNGVARIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDI 318 (394)
T ss_dssp CSEEECCTTEEEECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEC
T ss_pred cceEEcCCcceEcccceeeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCc-eeecCCCCcCEEEe
Confidence 334444455666666677777777777775321 1221 2334566777777742 4555543 24556777887777
Q ss_pred ccccccceecccccCCcccccCCCeeeeCccCeEecCCCccccccCCCCccccCCCccEEeEec
Q 039042 433 ESCAMITEIVLADDDDDHDAAKDEVIAFSELNELKLLNLKSLRSFYSGNRALNFPSLERLLVDD 496 (526)
Q Consensus 433 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~ 496 (526)
.. .++.+... ++..+.+|+.+.+-. .++.+.... +..|++|+.+.+.+
T Consensus 319 p~--~v~~I~~~-----------aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 319 PE--GITQILDD-----------AFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSG 366 (394)
T ss_dssp CT--TCCEECTT-----------TTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESS
T ss_pred CC--cccEehHh-----------HhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECC
Confidence 54 34444332 334567788887743 466666553 66678888887765
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=0.00032 Score=69.75 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=34.9
Q ss_pred ccccceEEEeccCceeeccccccccCcccEEEEeccCCcccccC-CCccCCCcCEEEEccCCCcccccchHHHhhccccc
Q 039042 350 MEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTNCHRLINLVP-SSTSFQNLTSLEISYCNGLKNVLTFSIAKTLVRLR 428 (526)
Q Consensus 350 ~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 428 (526)
.+..|+.+.+.+.+..+....+..+.+|+.+.+.. .+..++. .+..+.+|+.+.|.. +++.+.. ..+..+++|+
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF~~C~~L~ 337 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAFAGCEQLE 337 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCC
T ss_pred ecccccEEecccccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHhhCCCCCC
Confidence 33444444444444444444555555555555532 2222222 223345555555532 2333322 2334455556
Q ss_pred EEEEc
Q 039042 429 EMKIE 433 (526)
Q Consensus 429 ~L~i~ 433 (526)
++.|.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.83 E-value=3.4e-05 Score=75.32 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=15.2
Q ss_pred cCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 154 GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
.+++|++|+|++++.++.++|..+. .+++|++|+|++|
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~---~l~~L~~L~l~~N 66 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKS 66 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSC---SCCCCSEEECCSS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhc---cccCCCEEECCCC
Confidence 3344444444432233333222222 3444444444444
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.81 E-value=3.2e-05 Score=75.50 Aligned_cols=105 Identities=19% Similarity=0.140 Sum_probs=78.7
Q ss_pred cEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecchhhhcccccccccccceeecccCccccccccCc
Q 039042 159 THLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFPQLQYLKMYDLEKLTSFCTGD 238 (526)
Q Consensus 159 ~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 238 (526)
..++.++.+.++.+ |. +. .+.+|++|+|+++..+..++... +..+++|++|+++++ .++.++...
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~---~~~~L~~L~l~~~n~l~~~~~~~---------~~~l~~L~~L~l~~N-~l~~~~~~~ 75 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LP---GAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKS-GLRFVAPDA 75 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SC---SCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSS-CCCEECTTG
T ss_pred CEEEcCCCCCCCcc-CC-CC---CCCCeeEEEccCCCCCCCcChhH---------hccccCCCEEECCCC-ccceeCHHH
Confidence 34566665467665 66 55 78999999999733788876432 267999999999985 788877653
Q ss_pred ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEEeeccc
Q 039042 239 VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIVDAEYI 287 (526)
Q Consensus 239 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 287 (526)
+..+++|+.|+|+++ ++..+++..+. .+ .|+.|++.+|.+
T Consensus 76 --~~~l~~L~~L~l~~N-~l~~~~~~~~~-----~~-~L~~l~l~~N~~ 115 (347)
T 2ifg_A 76 --FHFTPRLSRLNLSFN-ALESLSWKTVQ-----GL-SLQELVLSGNPL 115 (347)
T ss_dssp --GGSCSCCCEEECCSS-CCSCCCSTTTC-----SC-CCCEEECCSSCC
T ss_pred --hcCCcCCCEEeCCCC-ccceeCHHHcc-----cC-CceEEEeeCCCc
Confidence 678999999999998 78888876543 23 399999986654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=1.2e-05 Score=78.87 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=32.4
Q ss_pred hhhhhhhcccccccc---ccccc--ccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 127 LEKLEKLELRSINIE---RIWRN--QVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 127 l~~L~~L~L~~~~l~---~~~~~--~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
+++|+.|.+.+.... -.|.. .....+..+|+|+.|.|.+|..++ ++. + .+++|++|++..|
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~----~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K----PRPNLKSLEIISG 203 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C----BCTTCSEEEEECS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c----cCCCCcEEEEecC
Confidence 667777766554221 11211 111113457788888887764332 222 1 3677888888766
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.72 E-value=0.0063 Score=59.81 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=29.5
Q ss_pred hhhhhhhcccccccccccccccccccccCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEE
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELI 201 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~ 201 (526)
..+|+.+.+... ++.+-... +..|.+|+.+.+.. .++.+...++. .. +|+.+.+.. .+..+.
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~a----F~~C~~L~~I~lp~--~v~~Ig~~aF~---~c-~l~~i~~~~--~l~~I~ 106 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEAN----FNSCYNMTKVTVAS--TVTSIGDGAFA---DT-KLQSYTGME--RVKKFG 106 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTT----TTTCTTCCEEEECT--TCCEECTTTTT---TC-CCCEEEECT--TCCEEC
T ss_pred ccCCEEEEeCCC-ccChHHHH----hhCCCCCCEEEeCC--cceEechhhhc---CC-CCceEECCc--eeeEec
Confidence 455666666543 33221111 44677777777754 24444333333 33 455555543 344443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=1.5e-05 Score=78.06 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=25.6
Q ss_pred cCcccEEEEeccCCccc-----ccCCCccCCCcCEEEEccCCCccc
Q 039042 374 MNNLVILHVTNCHRLIN-----LVPSSTSFQNLTSLEISYCNGLKN 414 (526)
Q Consensus 374 l~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~ 414 (526)
+++|++|+++.+. +.. +...+..+++|+.|++++| .+.+
T Consensus 278 ~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp GGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred CCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 5677888886653 322 3334456789999999887 4554
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=3.4e-06 Score=83.28 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=16.0
Q ss_pred CCCcCEEEEccCCCcccccchH---HHhhcccccEEEEccc
Q 039042 398 FQNLTSLEISYCNGLKNVLTFS---IAKTLVRLREMKIESC 435 (526)
Q Consensus 398 ~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~i~~c 435 (526)
.++|++|++++| .+++..... .+...++|++|++++|
T Consensus 210 ~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 210 NRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 345555555554 333322111 1223355555555554
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=1.2e-06 Score=86.56 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=83.6
Q ss_pred hhhhhhhcccccccccccccccccccc-cCCcccEEEeccCCCceecCCcccccccccccccEEeeeccccccEEEeecc
Q 039042 127 LEKLEKLELRSINIERIWRNQVAAMTC-GIQNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKCHVLEELIVVDN 205 (526)
Q Consensus 127 l~~L~~L~L~~~~l~~~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 205 (526)
+++|+.|++++|.++..-.......+. ..++|++|+|++|. ++......+.. .+++|++|++++| .+........
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~--~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLP--VFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHH--HHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHH--HHHhccHhhcCCC-CCCHHHHHHH
Confidence 677888888888766431111111011 23688888888875 32211223332 5678888888887 4432211100
Q ss_pred hhhhccccc-ccccccceeecccCccccccccCc--ccccCCCCccEEEeccCCCceeccccccCCccccccCCcceEEE
Q 039042 206 QEEERKNNI-VMFPQLQYLKMYDLEKLTSFCTGD--VHMLEFPSLKELWISRCPEFMVRFKRTTNDLTKKVFPNLEELIV 282 (526)
Q Consensus 206 ~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~L~~L~l 282 (526)
...+ ...++|++|++++| .+....... ..+...++|++|++++|. +.......+... -...++|+.|++
T Consensus 147 -----~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~L 218 (372)
T 3un9_A 147 -----RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNV 218 (372)
T ss_dssp -----HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEEC
T ss_pred -----HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEEC
Confidence 0000 13467888888776 333311100 013456778888887773 432110000000 023456777777
Q ss_pred eecccccc-ceeccc--cccccccEEEeeeCC
Q 039042 283 DAEYIITN-KFIFSE--DLLCKLKCLDVEFVD 311 (526)
Q Consensus 283 ~~~~~~~~-~~~~~~--~~~~~L~~L~l~~~~ 311 (526)
++|.+.+. ...+.. ...++|++|++++|.
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 76655321 011111 123456666666554
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.0052 Score=60.45 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=54.9
Q ss_pred ccccccEEEeeeCCcccccccchhHhhcCCCccEEEEeeccccccCCCcCccccccceEEEec-cCceeeccccccccCc
Q 039042 298 LLCKLKCLDVEFVDELTTILSLDDFLQRFPTLKVLQIEGYSDWLPKEKVENGMEVIIRRVFRC-YDLKYILKQESSIMNN 376 (526)
Q Consensus 298 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-~~l~~~~~~~~~~l~~ 376 (526)
.+..|+.+.+... ++ .+....+..+.+|+.+.+......++...| ..+++|+.+.+. ..++.+....|..+.+
T Consensus 238 ~~~~L~~i~lp~~--v~--~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF--~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 238 GMKALDEIAIPKN--VT--SIGSFLLQNCTALKTLNFYAKVKTVPYLLC--SGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TCSSCCEEEECTT--CC--EECTTTTTTCTTCCEEEECCCCSEECTTTT--TTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred CCccceEEEcCCC--cc--EeCccccceeehhccccccccceecccccc--ccccccccccccccccceehhhhhcCCCC
Confidence 3445555555332 22 344445556666666666432222333333 456677777776 5677777777777777
Q ss_pred ccEEEEeccCCcccccC-CCccCCCcCEEEE
Q 039042 377 LVILHVTNCHRLINLVP-SSTSFQNLTSLEI 406 (526)
Q Consensus 377 L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l 406 (526)
|+.+.+.. .+..+.. .+..+++|+.+.+
T Consensus 312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 312 LSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred CCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 87777753 2333322 2344555665555
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.21 E-value=0.0064 Score=56.32 Aligned_cols=82 Identities=22% Similarity=0.095 Sum_probs=46.5
Q ss_pred cCCcccEEEeccCCCceecC--CcccccccccccccEEeeeccccccEEEeecchhhhccccccccc--ccceeecccCc
Q 039042 154 GIQNLTHLTLYNCMNLRCLF--SSCTVSNNSFVRLQYIRIEKCHVLEELIVVDNQEEERKNNIVMFP--QLQYLKMYDLE 229 (526)
Q Consensus 154 ~l~~L~~L~L~~c~~l~~l~--p~~l~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~ 229 (526)
++++|++|+|++|. ++.+. |..+. .+++|+.|+|++| .+..+.. . ..+. +|++|++++++
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~---~l~~L~~L~Ls~N-~i~~~~~-l----------~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQ---KAPNLKILNLSGN-ELKSERE-L----------DKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHH---HSTTCCEEECTTS-CCCSGGG-G----------GGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHh---hCCCCCEEECCCC-ccCCchh-h----------hhcccCCcceEEccCCc
Confidence 57788888888764 44321 22222 6778888888877 4444311 1 2233 78888887765
Q ss_pred cccccccCc----ccccCCCCccEEE
Q 039042 230 KLTSFCTGD----VHMLEFPSLKELW 251 (526)
Q Consensus 230 ~l~~~~~~~----~~~~~l~~L~~L~ 251 (526)
--..++... ..+..+|+|+.|+
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 332222110 1255788888776
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.93 E-value=0.0057 Score=53.42 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=62.0
Q ss_pred ccccCcccEEEEeccCCcc-----cccCCCccCCCcCEEEEccCCCcccccch---HHHhhcccccEEEEccccccceec
Q 039042 371 SSIMNNLVILHVTNCHRLI-----NLVPSSTSFQNLTSLEISYCNGLKNVLTF---SIAKTLVRLREMKIESCAMITEIV 442 (526)
Q Consensus 371 ~~~l~~L~~L~l~~c~~l~-----~l~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~i~~c~~l~~~~ 442 (526)
+...+.|++|++++|..+. .+...+...++|++|++++| .+.+.... ..+...++|++|++++|. +.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 3345677777777773332 12222344577888888877 45543221 233445778888888754 33210
Q ss_pred ccccCCcccccCCCeeeeCccCeEec--CCCccccccCCC---CccccCCCccEEeEecCC
Q 039042 443 LADDDDDHDAAKDEVIAFSELNELKL--LNLKSLRSFYSG---NRALNFPSLERLLVDDCT 498 (526)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~l~~~---~~~~~~~~L~~L~l~~C~ 498 (526)
...- .+.+...++|++|++ ++ +.+..-... ..+...++|++|++++|.
T Consensus 110 ~~~l-------~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILAL-------VEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHH-------HHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHH-------HHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 0000 011234467888888 44 344332111 113345778888887753
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.64 E-value=0.023 Score=52.55 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=20.6
Q ss_pred cccccceeecccCccccccccCcccccCCCCccEEEeccC
Q 039042 216 MFPQLQYLKMYDLEKLTSFCTGDVHMLEFPSLKELWISRC 255 (526)
Q Consensus 216 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 255 (526)
.+++|++|+++++ .+..+......+..+++|+.|+|+++
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 4666777777653 44444321111345666666666655
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.15 E-value=0.018 Score=50.23 Aligned_cols=133 Identities=13% Similarity=-0.045 Sum_probs=76.4
Q ss_pred eehhHHHHHhccccccceecccccc-ccccccc-cc--ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccch
Q 039042 37 ICLKDWLILQLQGIEDLELHELQEQ-DVNYFAN-EL--VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSNE 112 (526)
Q Consensus 37 ~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~-~~--~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l~ 112 (526)
...++.+...+.....|+.++++.+ .+..... .+ .....++|++|+|++|.........+.
T Consensus 22 ~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~--------------- 86 (185)
T 1io0_A 22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA--------------- 86 (185)
T ss_dssp CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------
T ss_pred cHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------
Confidence 3345667778888888888888876 5543211 11 123457899999998864322111110
Q ss_pred hhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEe--ccCCCceecCCccccc-ccccccccEE
Q 039042 113 LILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTL--YNCMNLRCLFSSCTVS-NNSFVRLQYI 189 (526)
Q Consensus 113 ~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L--~~c~~l~~l~p~~l~~-l~~l~~L~~L 189 (526)
......+.|++|+|++|.+.+.-.......+...++|++|+| ++|. ++.-....+++ +...++|++|
T Consensus 87 ---------~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 87 ---------EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp ---------HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence 011124679999999997764311111111456788999999 5554 33211111221 2245789999
Q ss_pred eeecc
Q 039042 190 RIEKC 194 (526)
Q Consensus 190 ~l~~~ 194 (526)
++++|
T Consensus 157 ~L~~n 161 (185)
T 1io0_A 157 GYHFT 161 (185)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99988
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.71 E-value=1.6 Score=35.01 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=16.9
Q ss_pred CcccEEEeccCCCceecCCcccccccccccccEEeeecc
Q 039042 156 QNLTHLTLYNCMNLRCLFSSCTVSNNSFVRLQYIRIEKC 194 (526)
Q Consensus 156 ~~L~~L~L~~c~~l~~l~p~~l~~l~~l~~L~~L~l~~~ 194 (526)
++|++|+|++| .++.+.+..+. .+++|+.|+|.+|
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~---~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLD---ALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGG---GCTTCCEEECCSS
T ss_pred cCCCEEECCCC-cCCccChhhhh---hccccCEEEecCC
Confidence 34566666554 33333222222 4555666665555
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=77.05 E-value=2.9 Score=33.48 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=24.5
Q ss_pred ccceEEEec-cCceeeccccccccCcccEEEEecc
Q 039042 352 VIIRRVFRC-YDLKYILKQESSIMNNLVILHVTNC 385 (526)
Q Consensus 352 ~~L~~L~l~-~~l~~~~~~~~~~l~~L~~L~l~~c 385 (526)
++|++|++. +.+..++.+.+..+++|+.|++.++
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 467777777 7777777777777777777777665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=51.04 E-value=4 Score=35.38 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=17.4
Q ss_pred hhhhhhcccccccccccccccccccccCCcccEEEeccC
Q 039042 128 EKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNC 166 (526)
Q Consensus 128 ~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c 166 (526)
..|+.|+|++|.+.+.......+++..-+.|++|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 446666666665553322211111223344555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=41.39 E-value=6.5 Score=34.05 Aligned_cols=107 Identities=10% Similarity=-0.027 Sum_probs=57.4
Q ss_pred eeehhHHHHHhccccccceecccccc-cccccccc-c--ccccCCcccEEEEecCCCCCCchhhhhhccCcccccccccc
Q 039042 36 KICLKDWLILQLQGIEDLELHELQEQ-DVNYFANE-L--VRVGSSQLKFLGIHGCRDALNPSAESKRQRQEESANDMQSN 111 (526)
Q Consensus 36 ~~~~~~~~~~~l~~~~~L~~l~l~~~-~~~~~~~~-~--~~~~l~~L~~L~L~~c~~~~~p~~~l~~l~~L~~i~~~~~l 111 (526)
....++.+...+..-..|+.++++.+ .+..-... + ....-..|+.|+|++|.....-...+
T Consensus 26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al--------------- 90 (197)
T 1pgv_A 26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--------------- 90 (197)
T ss_dssp -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH---------------
T ss_pred CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH---------------
Confidence 34456677777777778888888753 33221100 0 11234679999999887432210000
Q ss_pred hhhhcccccccchhhhhhhhhhcccccccccccccccccccccCCcccEEEeccC
Q 039042 112 ELILEDNANISNTLFLEKLEKLELRSINIERIWRNQVAAMTCGIQNLTHLTLYNC 166 (526)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~l~~L~~L~L~~c 166 (526)
. ..+..-..|+.|+|++|.|.+.-.....+++..-+.|++|+|+++
T Consensus 91 A---------~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 91 I---------ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp H---------HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred H---------HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 0 011124579999999997764311111111223455888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.26 E-value=52 Score=24.60 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=18.4
Q ss_pred ccccceEEEeccCceeeccccccccCcccEEEEec
Q 039042 350 MEVIIRRVFRCYDLKYILKQESSIMNNLVILHVTN 384 (526)
Q Consensus 350 ~~~~L~~L~l~~~l~~~~~~~~~~l~~L~~L~l~~ 384 (526)
.+.+|+.+.|-..++.+....|..+.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 33444444444445555555566666666666643
Done!