BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039043
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVG---------HDTIE--SAL 305
S+++ +FGS L EQ EL LG S FL ++ P G H + + L
Sbjct: 269 SVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFL 328
Query: 306 PEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGD 365
P GF ER K RGF+ W Q +L HPS G F+THCG S E++V+ L+ P +
Sbjct: 329 PPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAE 388
Query: 366 QIINARLM 373
Q +NA L+
Sbjct: 389 QKMNAVLL 396
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 1 IYPWFAMGHLTPFLHIANKLAE-RGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRV 59
I P MGHL P + A +L G ++F++ + PS R ++ +P S+ V
Sbjct: 11 IIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEG----PPSKAQRTVLDSLPSSISSV 66
Query: 60 DGLPP 64
LPP
Sbjct: 67 -FLPP 70
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Query: 254 KSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV 313
K S+++ +FG+ + L E S +PF+ +L+ D LPEGF E+
Sbjct: 269 KPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR-----DKARVHLPEGFLEKT 323
Query: 314 KGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLM 373
+G G + W Q +L H +VG FVTHCG SL E++ L+ P GDQ +N R++
Sbjct: 324 RGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV 382
Query: 374 XXXXXXXXXXXXXXXXXXFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE 425
FT+ G+ ++ E GK+++EN RE
Sbjct: 383 ----EDVLEIGVRIEGGVFTKSGLMSCFDQILSQ---EKGKKLRENLRALRE 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 24/328 (7%)
Query: 54 VSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPP 113
+ +P V+ PP E F + L + + + I+++L + V F +
Sbjct: 72 IDLPEVE--PPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMID 129
Query: 114 LARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPTSKIRLRAHEAR 173
+ +FGI S L+ + + +LS + + E D+D R Q I + +
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD--RDHQLLNIPGISNQV-PSN 186
Query: 174 GLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGK--PVILSG 231
L A + GG +++ K + I T ++E D + K P+ G
Sbjct: 187 VLPDACFNKDGGYIAYYKLAE-RFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVG 245
Query: 232 P--ALPESPRFALEERWETL----LGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS 284
P L P L++ L L KS++F FGS V Q +E+ LG + S
Sbjct: 246 PLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS 305
Query: 285 GLPFLVALKPPVGHDTIESALPEGFEE--RVKGRGFIHGGWVQQQLILKHPSVGCFVTHC 342
G+ FL + + + PEGF E ++G+G I GW Q +L H ++G FV+HC
Sbjct: 306 GVRFLWS------NSAEKKVFPEGFLEWMELEGKGMI-CGWAPQVEVLAHKAIGGFVSHC 358
Query: 343 GSGSLSEAMVNECQLVLLPNVGDQIINA 370
G S+ E+M ++ P +Q +NA
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNA 386
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 24/328 (7%)
Query: 54 VSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPP 113
+ +P V+ PP E F + L + + + I+++L + V F +
Sbjct: 72 IDLPEVE--PPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMID 129
Query: 114 LARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPTSKIRLRAHEAR 173
+ +FGI S L+ + + +LS + + E D+D R Q I + +
Sbjct: 130 VGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD--RDHQLLNIPGISNQV-PSN 186
Query: 174 GLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGK--PVILSG 231
L A + GG +++ K + I T ++E D + K P+ G
Sbjct: 187 VLPDACFNKDGGYIAYYKLAE-RFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVG 245
Query: 232 P--ALPESPRFALEERWETL----LGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS 284
P L P L++ L L KS++F FGS V Q +E+ LG + S
Sbjct: 246 PLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS 305
Query: 285 GLPFLVALKPPVGHDTIESALPEGFEE--RVKGRGFIHGGWVQQQLILKHPSVGCFVTHC 342
G+ FL + + + PEGF E ++G+G I GW Q +L H ++G FV+HC
Sbjct: 306 GVRFLWS------NSAEKKVFPEGFLEWMELEGKGMI-CGWAPQVEVLAHKAIGGFVSHC 358
Query: 343 GSGSLSEAMVNECQLVLLPNVGDQIINA 370
G S+ E+M ++ P +Q +NA
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNA 386
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Query: 195 LSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPRFALEERWETL--LGS 252
L L +A+ + I + + S+F K ++ GP +P+ + + L L
Sbjct: 211 LELPRANAVAINSFATIHPLIENELNSKF-KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQ 269
Query: 253 FKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEER 312
++ S+++ +FGS + L E G PF+ + + + LP+GF ER
Sbjct: 270 HENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR-----GDPKEKLPKGFLER 324
Query: 313 VKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARL 372
K +G I W Q ILKH SVG F+TH G S+ E +V ++ P GDQ +N L
Sbjct: 325 TKTKGKI-VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTIL 383
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 250 LGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPP--VGHDTIESALPE 307
L S + S+++ FGS V+ EQ E G FL ++P +G I S+
Sbjct: 289 LESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSS--- 345
Query: 308 GFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQI 367
F + RG I W Q +L HPS+G F+THCG S +E++ ++ P DQ
Sbjct: 346 EFTNEIADRGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQP 404
Query: 368 INARLM 373
+ R +
Sbjct: 405 TDCRFI 410
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 148/379 (39%), Gaps = 59/379 (15%)
Query: 8 GHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRV-DGLPPGA 66
GH+ P L I +L RGHR+S+ + + + + + + P V D + P
Sbjct: 24 GHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG-----------ATPVVYDSILP-K 71
Query: 67 ETTNDVPFPLHPLLMTAMDLTE-----PAIESVLRHLKPDFVFFDFTHW-LPPLARKFGI 120
E+ + +P + L E P +E +PD + +D W P L RK+ I
Sbjct: 72 ESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDI 131
Query: 121 KSVLYCIISPATIGYLLSPER--KLRERTLTDNDLLRPPQGFPTSKIRLRAHEARGLA-- 176
+ +SP + Y E +++ T + P G T A GL
Sbjct: 132 P---FVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAG--TGDAEEGAEAEDGLVRF 186
Query: 177 ----AATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGP 232
+A ++E G A L++ + C + +I+G D +G + GP
Sbjct: 187 FTRLSAFLEEHGVDTP-ATEFLIAPNRC-IVALPRTFQIKG---DTVGDNY----TFVGP 237
Query: 233 ALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVAL 292
+ + WE G + ++ A GS + + ++ + + GL + V L
Sbjct: 238 TYGDRSH---QGTWE---GPGDGRPVLLIALGSAFTDHLDFYRTCLSA--VDGLDWHVVL 289
Query: 293 KPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMV 352
VG + L E V +H WV Q IL S F+TH G GS EA+
Sbjct: 290 S--VGRFVDPADLGE-----VPPNVEVHQ-WVPQLDILTKAS--AFITHAGMGSTMEALS 339
Query: 353 NECQLVLLPNVGDQIINAR 371
N +V +P + +Q +NA
Sbjct: 340 NAVPMVAVPQIAEQTMNAE 358
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 144/376 (38%), Gaps = 62/376 (16%)
Query: 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPG 65
A GH+ P L + +L RGHR+++ +P K + R ++ + P D G
Sbjct: 17 AHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATG-PRPVLYHSTLPGPDADPEAWG 75
Query: 66 AETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDFTHW-LPPLARKFGIKSVL 124
+ ++V P L A+ P + PD V D T + LAR++G+ +V
Sbjct: 76 STLLDNV----EPFLNDAIQAL-PQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVS 130
Query: 125 YCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFG 184
A GY + ++ P P R RA+ AR A +KE G
Sbjct: 131 LSPNLVAWKGY--------------EEEVAEPMWREPRQTERGRAYYAR--FEAWLKENG 174
Query: 185 GG------LSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESP 238
S R+L+ + + A+ R E Y ++G+ G
Sbjct: 175 ITEHPDTFASHPPRSLVLIPK--ALQPHADRVDEDVYT-FVGACQGD------------- 218
Query: 239 RFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGF-ELSGLPFLVALKPPVG 297
A E W+ G+ K ++ + GS ++E V F L G ++ + V
Sbjct: 219 -RAEEGGWQRPAGAEK---VVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT 274
Query: 298 HDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQL 357
+ LP+ E +H WV Q IL+ + FVTH G+G E + +
Sbjct: 275 PAEL-GELPDNVE--------VH-DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPM 322
Query: 358 VLLPNVGDQIINARLM 373
+ +P DQ NA ++
Sbjct: 323 IAVPQAVDQFGNADML 338
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 56 VPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLA 115
+P +D LPP PF H + + ++ +++V + + PD D +
Sbjct: 13 IPDLDSLPPTYSAM--CPFGCH-CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISEL 69
Query: 116 RK---FGIKSVLYCIISPATIGYL----LSPERKLRERTLTDNDLLRPPQGFPTSKIRLR 168
RK G++ + ++ I + SP RKL++ ++ N L+ P P+S + LR
Sbjct: 70 RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129
Query: 169 AHEAR----------GLAAATVKEFGGG 186
H+ R GL E GG
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 323 WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQ 366
W+ Q +L HP F+TH G+ + EA+ + V +P DQ
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 8 GHLTPFLHIANKLAERGHRISFL 30
GH+ P L + ++LA RGHRI+++
Sbjct: 16 GHVYPSLGLVSELARRGHRITYV 38
>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
pdb|4J2U|B Chain B, Crystal Structure Of An Enoyl-coa Hydratase From
Rhodobacter Sphaeroides 2.4.1
Length = 365
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 316 RGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINAR 371
+GF GG V +GC H G S+ EC + L+P+VG + AR
Sbjct: 129 QGFTXGGGV---------GLGCHARHRIVGETSQISXPECAIGLVPDVGGTHLLAR 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,247,342
Number of Sequences: 62578
Number of extensions: 538462
Number of successful extensions: 1319
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 17
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)