Query 039043
Match_columns 449
No_of_seqs 125 out of 1473
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 2.3E-64 5.1E-69 496.2 41.5 440 1-448 11-467 (472)
2 PLN02208 glycosyltransferase f 100.0 1.9E-64 4E-69 495.8 40.1 430 1-447 9-440 (442)
3 PLN00414 glycosyltransferase f 100.0 1.2E-63 2.5E-68 490.7 41.8 432 1-449 9-443 (446)
4 PLN02764 glycosyltransferase f 100.0 4.2E-63 9E-68 483.5 42.0 436 1-448 10-447 (453)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.4E-62 7.4E-67 484.2 41.0 435 1-447 14-472 (477)
6 PLN02992 coniferyl-alcohol glu 100.0 2E-60 4.3E-65 468.7 40.3 428 1-446 10-469 (481)
7 PLN03007 UDP-glucosyltransfera 100.0 3E-60 6.6E-65 474.4 39.2 439 1-448 10-482 (482)
8 PLN02534 UDP-glycosyltransfera 100.0 7.5E-60 1.6E-64 466.5 40.5 440 1-447 13-487 (491)
9 PLN02173 UDP-glucosyl transfer 100.0 8.5E-60 1.8E-64 461.8 39.9 409 1-445 10-447 (449)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 1E-59 2.2E-64 463.4 40.3 421 1-447 12-451 (451)
11 PLN02210 UDP-glucosyl transfer 100.0 2.8E-59 6.1E-64 462.1 40.2 419 1-445 13-454 (456)
12 PLN03015 UDP-glucosyl transfer 100.0 6.6E-59 1.4E-63 455.3 39.7 429 1-444 8-466 (470)
13 PLN02555 limonoid glucosyltran 100.0 1E-58 2.2E-63 457.9 38.8 425 1-446 12-469 (480)
14 PLN02562 UDP-glycosyltransfera 100.0 2.1E-58 4.6E-63 455.4 39.5 412 1-445 11-448 (448)
15 PLN02448 UDP-glycosyltransfera 100.0 6.8E-58 1.5E-62 455.2 38.7 420 1-446 15-457 (459)
16 PLN00164 glucosyltransferase; 100.0 1.8E-57 4E-62 452.0 39.9 431 1-448 8-475 (480)
17 PLN03004 UDP-glycosyltransfera 100.0 1.3E-57 2.8E-62 446.7 36.5 410 1-430 8-441 (451)
18 PLN02207 UDP-glycosyltransfera 100.0 3.1E-57 6.7E-62 445.3 38.1 427 1-448 8-467 (468)
19 PLN02554 UDP-glycosyltransfera 100.0 9.2E-57 2E-61 448.7 38.4 423 1-447 7-479 (481)
20 PLN02152 indole-3-acetate beta 100.0 1.2E-56 2.6E-61 440.3 38.4 412 1-444 8-454 (455)
21 PLN02167 UDP-glycosyltransfera 100.0 3.8E-55 8.1E-60 436.4 38.8 432 1-448 8-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.2E-46 2.6E-51 377.0 28.3 396 2-447 27-467 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 8.6E-46 1.9E-50 365.3 29.8 387 2-445 1-391 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 1.5E-47 3.2E-52 389.7 3.9 391 5-446 8-443 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 6.5E-43 1.4E-47 346.3 23.4 374 1-442 5-400 (401)
26 COG1819 Glycosyl transferases, 100.0 5.5E-42 1.2E-46 334.5 23.1 393 1-446 6-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.5E-40 7.5E-45 335.7 18.9 420 1-445 10-454 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.5E-25 3.2E-30 216.2 28.3 325 4-445 9-350 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-25 4.1E-30 214.4 21.0 299 4-404 9-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.1E-23 2.4E-28 201.8 22.4 298 3-407 7-314 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 4.6E-22 9.9E-27 189.7 28.5 301 4-407 8-324 (357)
32 PRK00726 murG undecaprenyldiph 99.9 3.9E-19 8.5E-24 173.4 28.1 333 4-446 9-357 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.5E-18 9.9E-23 165.4 25.9 313 5-422 8-333 (350)
34 COG4671 Predicted glycosyl tra 99.8 1.9E-16 4.1E-21 144.2 23.3 327 5-406 20-364 (400)
35 TIGR01133 murG undecaprenyldip 99.8 2.9E-16 6.3E-21 152.6 24.0 314 2-425 6-333 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.7 1.6E-16 3.4E-21 155.7 20.8 342 5-442 14-384 (385)
37 TIGR03590 PseG pseudaminic aci 99.7 6.4E-16 1.4E-20 144.5 19.5 252 6-372 13-278 (279)
38 PRK13609 diacylglycerol glucos 99.7 6.4E-15 1.4E-19 144.9 18.9 167 254-446 200-371 (380)
39 PRK00025 lpxB lipid-A-disaccha 99.6 8.9E-14 1.9E-18 136.9 19.0 109 327-446 256-377 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.6 2.8E-16 6.1E-21 135.8 -1.6 136 258-407 1-144 (167)
41 PLN02605 monogalactosyldiacylg 99.5 1.1E-12 2.4E-17 128.9 21.2 173 250-445 200-380 (382)
42 TIGR03492 conserved hypothetic 99.5 1.1E-11 2.4E-16 121.7 25.7 360 5-442 5-394 (396)
43 PRK13608 diacylglycerol glucos 99.5 3.4E-12 7.4E-17 125.8 21.3 166 254-445 200-370 (391)
44 cd03814 GT1_like_2 This family 99.4 2.2E-10 4.9E-15 111.2 29.2 334 7-444 14-363 (364)
45 PF03033 Glyco_transf_28: Glyc 99.3 5E-13 1.1E-17 111.8 1.2 116 1-131 3-133 (139)
46 cd03800 GT1_Sucrose_synthase T 99.3 4.5E-09 9.8E-14 103.8 28.2 80 315-407 282-368 (398)
47 cd03823 GT1_ExpE7_like This fa 99.3 1.6E-08 3.6E-13 97.8 30.9 131 256-407 190-329 (359)
48 cd03798 GT1_wlbH_like This fam 99.3 1.3E-08 2.8E-13 98.7 29.3 348 6-446 13-376 (377)
49 cd03817 GT1_UGDG_like This fam 99.2 6.6E-09 1.4E-13 101.0 27.2 331 3-427 10-361 (374)
50 cd03801 GT1_YqgM_like This fam 99.2 1.3E-08 2.9E-13 98.2 28.9 345 6-444 13-373 (374)
51 PLN02871 UDP-sulfoquinovose:DA 99.2 7.4E-09 1.6E-13 104.7 27.7 141 258-424 264-415 (465)
52 COG3980 spsG Spore coat polysa 99.2 7.2E-10 1.6E-14 98.7 16.7 151 256-430 158-310 (318)
53 cd04962 GT1_like_5 This family 99.2 2.2E-08 4.8E-13 98.0 29.3 112 315-445 252-369 (371)
54 cd03808 GT1_cap1E_like This fa 99.2 2.7E-08 5.9E-13 95.9 29.6 306 6-407 9-329 (359)
55 cd03794 GT1_wbuB_like This fam 99.2 2.1E-08 4.6E-13 97.9 28.8 130 256-407 219-365 (394)
56 TIGR03449 mycothiol_MshA UDP-N 99.2 7.4E-08 1.6E-12 95.6 31.8 113 315-446 282-401 (405)
57 cd03818 GT1_ExpC_like This fam 99.2 2.8E-08 6E-13 98.4 28.4 80 315-407 280-366 (396)
58 cd03820 GT1_amsD_like This fam 99.1 4.8E-08 1E-12 93.7 27.0 308 7-424 13-330 (348)
59 PRK05749 3-deoxy-D-manno-octul 99.1 2.4E-08 5.3E-13 99.8 23.5 80 317-407 303-388 (425)
60 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 1.9E-09 4.2E-14 105.3 14.9 159 255-444 197-362 (363)
61 PF04007 DUF354: Protein of un 99.1 4.9E-08 1.1E-12 92.6 22.5 291 7-406 10-309 (335)
62 cd03816 GT1_ALG1_like This fam 99.0 2E-07 4.2E-12 92.8 24.8 94 316-424 294-399 (415)
63 cd03819 GT1_WavL_like This fam 99.0 5.9E-07 1.3E-11 87.2 26.3 150 257-425 185-347 (355)
64 cd03822 GT1_ecORF704_like This 98.9 1.2E-06 2.5E-11 85.1 27.8 79 315-407 246-334 (366)
65 TIGR02472 sucr_P_syn_N sucrose 98.9 1.7E-06 3.6E-11 86.9 28.9 111 315-444 316-438 (439)
66 cd03796 GT1_PIG-A_like This fa 98.9 1.3E-06 2.8E-11 86.6 27.7 78 315-407 249-333 (398)
67 cd03795 GT1_like_4 This family 98.9 1.9E-06 4.1E-11 83.6 28.1 133 258-407 192-332 (357)
68 cd03811 GT1_WabH_like This fam 98.9 6.6E-07 1.4E-11 85.9 24.7 80 315-407 245-332 (353)
69 TIGR00236 wecB UDP-N-acetylglu 98.9 2.2E-08 4.7E-13 98.0 14.5 159 256-447 197-364 (365)
70 PRK10307 putative glycosyl tra 98.9 3E-06 6.4E-11 84.4 29.8 164 258-447 230-408 (412)
71 cd03825 GT1_wcfI_like This fam 98.9 1E-06 2.2E-11 85.8 26.0 112 316-446 244-364 (365)
72 PRK14089 ipid-A-disaccharide s 98.9 1.1E-07 2.4E-12 91.0 16.8 160 256-442 167-346 (347)
73 cd03799 GT1_amsK_like This is 98.9 1.7E-06 3.7E-11 83.9 25.5 80 315-407 235-327 (355)
74 cd03821 GT1_Bme6_like This fam 98.8 3.6E-06 7.8E-11 81.6 26.6 78 315-407 261-345 (375)
75 cd05844 GT1_like_7 Glycosyltra 98.8 1.5E-06 3.1E-11 84.9 23.7 80 315-407 244-336 (367)
76 TIGR02468 sucrsPsyn_pln sucros 98.8 5.8E-06 1.3E-10 88.5 28.6 114 315-447 547-671 (1050)
77 PRK09922 UDP-D-galactose:(gluc 98.8 7.1E-07 1.5E-11 87.1 20.5 133 258-407 181-324 (359)
78 cd03807 GT1_WbnK_like This fam 98.8 4.1E-06 8.8E-11 80.9 25.3 108 316-443 251-363 (365)
79 TIGR03088 stp2 sugar transfera 98.8 2.3E-06 5E-11 83.9 23.6 112 316-446 255-372 (374)
80 cd04951 GT1_WbdM_like This fam 98.7 2E-06 4.3E-11 83.5 21.3 110 315-444 244-358 (360)
81 cd03805 GT1_ALG2_like This fam 98.7 1.9E-05 4E-10 78.0 28.0 79 315-407 279-364 (392)
82 PF02350 Epimerase_2: UDP-N-ac 98.7 7.4E-08 1.6E-12 92.8 9.0 260 80-422 48-327 (346)
83 cd03812 GT1_CapH_like This fam 98.7 3.2E-06 6.9E-11 82.1 20.5 133 257-407 192-331 (358)
84 TIGR03087 stp1 sugar transfera 98.7 1.1E-05 2.5E-10 79.8 24.3 111 314-445 278-395 (397)
85 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 9.1E-07 2E-11 86.2 15.8 132 255-406 200-338 (365)
86 PRK01021 lpxB lipid-A-disaccha 98.6 6.4E-06 1.4E-10 82.9 21.6 203 223-446 379-605 (608)
87 cd04955 GT1_like_6 This family 98.6 4.6E-05 1E-09 74.1 27.5 156 260-444 196-362 (363)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.6 4.2E-05 9E-10 73.2 25.5 302 5-407 57-386 (419)
89 cd03809 GT1_mtfB_like This fam 98.6 1.3E-05 2.8E-10 77.8 22.9 106 314-440 251-363 (365)
90 PRK15179 Vi polysaccharide bio 98.6 1.9E-05 4.2E-10 82.4 24.8 114 315-444 573-691 (694)
91 cd03802 GT1_AviGT4_like This f 98.5 5.1E-05 1.1E-09 72.9 25.1 125 260-407 174-308 (335)
92 KOG3349 Predicted glycosyltran 98.5 4.7E-07 1E-11 72.9 8.6 115 257-380 4-129 (170)
93 PF02684 LpxB: Lipid-A-disacch 98.5 1.2E-05 2.6E-10 77.5 18.6 187 222-428 150-355 (373)
94 PLN02275 transferase, transfer 98.5 0.00011 2.5E-09 71.9 25.8 75 316-405 286-371 (371)
95 TIGR02149 glgA_Coryne glycogen 98.5 7.7E-05 1.7E-09 73.5 24.2 169 258-446 202-386 (388)
96 COG0763 LpxB Lipid A disacchar 98.3 2.7E-05 5.8E-10 73.6 15.9 203 225-445 156-380 (381)
97 cd03792 GT1_Trehalose_phosphor 98.3 0.00041 8.8E-09 68.0 24.7 111 315-446 251-371 (372)
98 cd03804 GT1_wbaZ_like This fam 98.3 7.6E-05 1.6E-09 72.5 19.2 123 260-407 198-326 (351)
99 PLN00142 sucrose synthase 98.2 0.00047 1E-08 72.5 24.6 77 316-405 642-730 (815)
100 PLN02846 digalactosyldiacylgly 98.2 0.00062 1.3E-08 67.8 24.2 73 319-407 287-363 (462)
101 cd03806 GT1_ALG11_like This fa 98.2 0.0034 7.3E-08 62.6 28.4 79 315-407 304-392 (419)
102 COG0381 WecB UDP-N-acetylgluco 98.1 0.00032 7E-09 66.6 18.9 157 255-441 203-369 (383)
103 cd04950 GT1_like_1 Glycosyltra 98.1 0.0055 1.2E-07 60.1 28.3 109 315-446 253-371 (373)
104 TIGR02470 sucr_synth sucrose s 98.1 0.005 1.1E-07 64.9 28.5 78 315-405 618-707 (784)
105 TIGR02918 accessory Sec system 98.0 0.0027 5.9E-08 64.5 24.0 118 315-445 375-498 (500)
106 cd03791 GT1_Glycogen_synthase_ 98.0 0.0015 3.3E-08 66.3 22.0 83 316-407 351-442 (476)
107 PRK15427 colanic acid biosynth 98.0 0.0002 4.3E-09 71.1 15.0 113 315-446 278-405 (406)
108 COG5017 Uncharacterized conser 98.0 9.6E-05 2.1E-09 58.7 10.0 128 259-406 2-141 (161)
109 cd04949 GT1_gtfA_like This fam 98.0 0.0013 2.9E-08 64.3 20.7 101 315-427 260-363 (372)
110 PRK09814 beta-1,6-galactofuran 98.0 0.0047 1E-07 59.5 23.8 110 316-443 207-332 (333)
111 PLN02949 transferase, transfer 98.0 0.0048 1E-07 62.1 24.5 113 315-446 334-456 (463)
112 PRK15484 lipopolysaccharide 1, 97.9 0.00042 9.1E-09 68.2 16.6 116 315-448 256-379 (380)
113 cd03813 GT1_like_3 This family 97.9 0.0025 5.4E-08 64.7 22.2 81 315-407 353-442 (475)
114 PRK00654 glgA glycogen synthas 97.8 0.0065 1.4E-07 61.5 23.7 116 317-447 338-463 (466)
115 PF13844 Glyco_transf_41: Glyc 97.8 0.00056 1.2E-08 67.6 14.1 172 255-445 283-465 (468)
116 PF00534 Glycos_transf_1: Glyc 97.7 0.00034 7.3E-09 60.3 10.2 136 255-407 13-158 (172)
117 cd01635 Glycosyltransferase_GT 97.7 0.0024 5.2E-08 57.1 16.0 49 315-365 160-216 (229)
118 PRK10125 putative glycosyl tra 97.7 0.018 4E-07 57.0 23.4 140 272-446 256-404 (405)
119 cd04946 GT1_AmsK_like This fam 97.7 0.00092 2E-08 66.4 14.1 83 315-407 288-377 (407)
120 PLN02501 digalactosyldiacylgly 97.6 0.0037 8E-08 64.3 17.9 75 317-407 602-681 (794)
121 PF13692 Glyco_trans_1_4: Glyc 97.4 0.00045 9.8E-09 56.8 7.2 127 258-407 3-135 (135)
122 PRK15490 Vi polysaccharide bio 97.4 0.11 2.3E-06 52.8 24.5 111 315-446 454-575 (578)
123 PLN02316 synthase/transferase 97.3 0.22 4.7E-06 54.5 27.4 119 316-448 900-1035(1036)
124 COG1817 Uncharacterized protei 97.0 0.17 3.7E-06 46.8 18.8 104 7-130 10-115 (346)
125 TIGR02193 heptsyl_trn_I lipopo 96.8 0.023 5E-07 54.3 13.2 138 255-405 178-319 (319)
126 PRK10017 colanic acid biosynth 96.8 0.62 1.3E-05 46.4 28.9 179 248-444 226-422 (426)
127 PF13579 Glyco_trans_4_4: Glyc 96.5 0.0044 9.6E-08 52.0 5.2 92 12-127 6-104 (160)
128 PF06722 DUF1205: Protein of u 96.3 0.0085 1.8E-07 46.0 5.0 62 244-307 28-94 (97)
129 COG3914 Spy Predicted O-linked 96.2 0.063 1.4E-06 53.6 11.8 122 255-385 428-562 (620)
130 PF13477 Glyco_trans_4_2: Glyc 96.1 0.077 1.7E-06 43.6 10.3 89 13-127 13-107 (139)
131 PF06258 Mito_fiss_Elm1: Mitoc 95.9 1.7 3.7E-05 41.3 19.9 58 325-385 221-282 (311)
132 PRK14098 glycogen synthase; Pr 95.8 0.14 3E-06 52.2 12.7 83 315-406 361-450 (489)
133 TIGR02095 glgA glycogen/starch 95.7 0.2 4.4E-06 50.8 13.3 113 316-446 346-472 (473)
134 PHA01630 putative group 1 glyc 95.5 0.5 1.1E-05 45.4 14.7 111 323-446 197-330 (331)
135 KOG4626 O-linked N-acetylgluco 95.5 0.12 2.7E-06 52.0 10.2 122 255-385 757-889 (966)
136 PHA01633 putative glycosyl tra 95.3 0.57 1.2E-05 44.9 14.0 83 316-407 201-307 (335)
137 PF13439 Glyco_transf_4: Glyco 94.8 0.17 3.6E-06 43.0 8.5 98 8-130 13-112 (177)
138 TIGR02201 heptsyl_trn_III lipo 94.7 1.9 4.2E-05 41.6 16.3 101 2-125 5-109 (344)
139 PF13524 Glyco_trans_1_2: Glyc 94.6 0.35 7.6E-06 36.5 8.7 82 341-441 9-91 (92)
140 COG4370 Uncharacterized protei 94.2 0.25 5.4E-06 45.5 8.0 109 319-445 298-408 (412)
141 TIGR02400 trehalose_OtsA alpha 93.8 0.61 1.3E-05 47.0 10.9 106 319-445 339-455 (456)
142 PF01975 SurE: Survival protei 93.1 0.26 5.7E-06 43.2 6.2 107 12-129 15-135 (196)
143 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.9 4.1E-05 36.9 11.0 93 22-127 1-96 (171)
144 cd03789 GT1_LPS_heptosyltransf 92.7 3.6 7.8E-05 38.3 13.9 96 2-123 5-104 (279)
145 PLN02939 transferase, transfer 92.7 3.3 7.1E-05 45.1 14.7 83 315-406 836-930 (977)
146 TIGR03713 acc_sec_asp1 accesso 92.4 0.92 2E-05 46.4 10.0 93 316-428 409-507 (519)
147 COG0438 RfaG Glycosyltransfera 92.2 5.6 0.00012 37.2 14.9 80 315-407 256-342 (381)
148 TIGR02195 heptsyl_trn_II lipop 92.0 8.1 0.00018 37.0 15.7 97 2-124 5-105 (334)
149 PRK10422 lipopolysaccharide co 91.8 13 0.00028 36.0 16.9 98 256-360 183-287 (352)
150 cd03788 GT1_TPS Trehalose-6-Ph 90.6 0.91 2E-05 45.8 7.8 103 319-444 344-459 (460)
151 PRK10916 ADP-heptose:LPS hepto 90.4 11 0.00023 36.5 14.7 97 2-124 6-106 (348)
152 PF07429 Glyco_transf_56: 4-al 88.7 3.1 6.7E-05 39.6 9.0 136 258-407 185-333 (360)
153 PRK14099 glycogen synthase; Pr 88.1 10 0.00022 38.7 13.1 80 319-407 354-447 (485)
154 PRK02797 4-alpha-L-fucosyltran 86.3 4.9 0.00011 37.7 8.7 134 259-406 147-293 (322)
155 COG0496 SurE Predicted acid ph 86.1 2.4 5.2E-05 38.5 6.5 101 10-129 13-127 (252)
156 PF05159 Capsule_synth: Capsul 85.9 5.6 0.00012 36.9 9.3 44 316-362 183-226 (269)
157 PLN03063 alpha,alpha-trehalose 85.3 4 8.7E-05 44.2 8.9 104 322-446 362-477 (797)
158 PF06925 MGDG_synth: Monogalac 84.9 2.5 5.4E-05 36.1 5.9 44 85-128 75-125 (169)
159 KOG2941 Beta-1,4-mannosyltrans 84.6 38 0.00083 32.3 27.4 118 3-132 19-142 (444)
160 TIGR02919 accessory Sec system 84.2 4.4 9.5E-05 40.5 8.0 124 255-407 282-411 (438)
161 PF08660 Alg14: Oligosaccharid 84.0 3.3 7.1E-05 35.5 6.2 110 4-127 5-129 (170)
162 COG3660 Predicted nucleoside-d 83.5 13 0.00028 33.9 9.7 96 258-360 164-271 (329)
163 COG1066 Sms Predicted ATP-depe 83.4 2.3 5E-05 41.3 5.3 94 4-125 101-216 (456)
164 PF00731 AIRC: AIR carboxylase 82.9 17 0.00036 30.4 9.6 140 258-429 2-148 (150)
165 TIGR00715 precor6x_red precorr 82.3 4.2 9.2E-05 37.4 6.6 79 13-125 12-98 (256)
166 COG0003 ArsA Predicted ATPase 80.7 8.4 0.00018 36.7 8.1 36 5-40 11-46 (322)
167 cd03793 GT1_Glycogen_synthase_ 80.5 6.4 0.00014 40.4 7.6 78 325-407 467-552 (590)
168 PF04127 DFP: DNA / pantothena 78.9 6.9 0.00015 34.0 6.4 29 4-34 25-53 (185)
169 PRK06718 precorrin-2 dehydroge 78.5 40 0.00087 29.7 11.3 147 255-430 10-165 (202)
170 PRK14501 putative bifunctional 77.1 5.3 0.00011 43.0 6.3 113 318-447 344-463 (726)
171 COG1618 Predicted nucleotide k 76.8 12 0.00025 31.7 6.7 95 4-107 13-108 (179)
172 PRK10964 ADP-heptose:LPS hepto 76.4 7.3 0.00016 37.2 6.5 131 257-406 179-321 (322)
173 PF02571 CbiJ: Precorrin-6x re 76.1 8.3 0.00018 35.3 6.4 101 14-125 119-225 (249)
174 PF04464 Glyphos_transf: CDP-G 75.9 6.1 0.00013 38.5 6.0 109 316-440 252-367 (369)
175 COG2099 CobK Precorrin-6x redu 75.1 7 0.00015 35.4 5.4 104 15-125 119-228 (257)
176 PF01075 Glyco_transf_9: Glyco 73.7 6 0.00013 36.0 5.0 100 254-360 103-208 (247)
177 PRK09620 hypothetical protein; 72.4 20 0.00043 32.4 7.9 29 3-33 24-52 (229)
178 PRK00346 surE 5'(3')-nucleotid 71.9 18 0.00039 33.1 7.5 96 12-127 15-124 (250)
179 PF09314 DUF1972: Domain of un 71.4 68 0.0015 27.9 10.7 36 15-55 25-62 (185)
180 cd01965 Nitrogenase_MoFe_beta_ 71.3 28 0.0006 34.8 9.4 35 89-125 361-395 (428)
181 TIGR00087 surE 5'/3'-nucleotid 70.8 35 0.00075 31.2 9.1 100 12-127 15-128 (244)
182 cd07039 TPP_PYR_POX Pyrimidine 70.7 64 0.0014 27.3 10.3 29 332-362 63-97 (164)
183 PRK13934 stationary phase surv 70.7 23 0.0005 32.7 7.9 30 11-41 14-43 (266)
184 PRK13932 stationary phase surv 70.0 27 0.00059 32.0 8.2 29 12-41 20-48 (257)
185 PF04413 Glycos_transf_N: 3-De 69.9 11 0.00024 32.8 5.5 91 5-127 29-126 (186)
186 COG4394 Uncharacterized protei 69.8 40 0.00087 31.2 8.9 39 317-358 239-280 (370)
187 cd01424 MGS_CPS_II Methylglyox 69.4 11 0.00024 29.5 4.9 82 9-124 11-100 (110)
188 PF07355 GRDB: Glycine/sarcosi 69.0 9.8 0.00021 36.3 5.2 49 79-127 60-119 (349)
189 PRK05562 precorrin-2 dehydroge 68.7 51 0.0011 29.6 9.5 151 249-430 20-180 (223)
190 TIGR01285 nifN nitrogenase mol 68.2 33 0.00071 34.4 9.1 35 89-125 363-397 (432)
191 PRK12342 hypothetical protein; 67.5 11 0.00024 34.6 5.1 40 89-128 99-145 (254)
192 PRK13933 stationary phase surv 67.0 15 0.00031 33.8 5.8 26 13-39 16-41 (253)
193 KOG1111 N-acetylglucosaminyltr 66.8 1.3E+02 0.0028 29.2 16.8 44 315-360 251-301 (426)
194 TIGR02398 gluc_glyc_Psyn gluco 66.7 71 0.0015 32.5 11.1 109 317-446 363-482 (487)
195 PRK03359 putative electron tra 66.6 11 0.00024 34.7 4.9 40 89-128 102-148 (256)
196 TIGR02095 glgA glycogen/starch 65.1 41 0.00088 34.0 9.4 22 13-34 23-44 (473)
197 cd00532 MGS-like MGS-like doma 64.9 8.9 0.00019 30.2 3.6 83 9-124 10-104 (112)
198 COG0299 PurN Folate-dependent 64.3 33 0.00072 29.9 7.0 107 270-404 63-172 (200)
199 PF02142 MGS: MGS-like domain 63.8 2.8 6.1E-05 31.9 0.5 83 13-123 2-94 (95)
200 PF00862 Sucrose_synth: Sucros 63.4 10 0.00023 37.9 4.4 114 8-127 297-432 (550)
201 PRK13935 stationary phase surv 63.2 55 0.0012 30.0 8.8 29 12-41 15-43 (253)
202 PF06506 PrpR_N: Propionate ca 62.5 8.1 0.00018 33.3 3.2 70 332-407 32-124 (176)
203 cd01974 Nitrogenase_MoFe_beta 62.0 78 0.0017 31.7 10.5 36 88-125 366-401 (435)
204 PRK13931 stationary phase surv 61.6 41 0.00089 31.0 7.7 98 12-127 15-129 (261)
205 cd00550 ArsA_ATPase Oxyanion-t 61.6 31 0.00068 31.6 7.1 33 4-36 8-40 (254)
206 smart00851 MGS MGS-like domain 61.1 32 0.00068 25.7 5.9 77 13-123 2-89 (90)
207 PF05728 UPF0227: Uncharacteri 60.1 14 0.0003 32.2 4.2 45 87-131 45-93 (187)
208 cd01423 MGS_CPS_I_III Methylgl 59.8 13 0.00027 29.5 3.6 85 9-123 11-105 (116)
209 PRK00994 F420-dependent methyl 59.2 21 0.00045 32.0 5.0 42 89-130 50-98 (277)
210 TIGR00715 precor6x_red precorr 59.0 16 0.00036 33.5 4.7 36 90-125 188-229 (256)
211 TIGR01918 various_sel_PB selen 58.6 19 0.00041 35.3 5.1 48 79-126 56-114 (431)
212 TIGR01917 gly_red_sel_B glycin 58.5 19 0.00041 35.4 5.1 48 79-126 56-114 (431)
213 PRK13982 bifunctional SbtC-lik 58.4 27 0.00058 35.3 6.4 21 14-34 286-306 (475)
214 PF02951 GSH-S_N: Prokaryotic 58.0 10 0.00022 30.3 2.8 25 12-36 19-43 (119)
215 cd03466 Nitrogenase_NifN_2 Nit 58.0 62 0.0013 32.4 9.0 35 89-125 362-396 (429)
216 cd07038 TPP_PYR_PDC_IPDC_like 56.7 79 0.0017 26.7 8.3 28 335-362 60-93 (162)
217 KOG0853 Glycosyltransferase [C 56.4 18 0.0004 36.4 4.8 64 346-424 381-444 (495)
218 COG0052 RpsB Ribosomal protein 55.6 13 0.00028 33.6 3.2 31 100-130 157-190 (252)
219 PRK07313 phosphopantothenoylcy 55.5 1.4E+02 0.003 25.9 10.4 52 354-406 113-179 (182)
220 COG0503 Apt Adenine/guanine ph 55.3 29 0.00063 30.0 5.4 36 90-125 44-82 (179)
221 COG0859 RfaF ADP-heptose:LPS h 55.2 40 0.00087 32.3 7.0 97 4-125 9-108 (334)
222 PLN02470 acetolactate synthase 55.1 1.1E+02 0.0023 32.1 10.6 91 262-361 2-109 (585)
223 cd00561 CobA_CobO_BtuR ATP:cor 54.9 1.2E+02 0.0025 25.7 8.8 91 1-107 7-103 (159)
224 TIGR01470 cysG_Nterm siroheme 54.7 1.5E+02 0.0033 26.1 12.9 148 256-429 10-164 (205)
225 PRK00039 ruvC Holliday junctio 54.6 34 0.00073 29.1 5.5 46 82-127 44-105 (164)
226 COG2894 MinD Septum formation 54.6 44 0.00094 29.9 6.2 31 5-35 12-42 (272)
227 TIGR00725 conserved hypothetic 54.0 1.2E+02 0.0025 25.7 8.7 98 244-362 21-123 (159)
228 PRK02910 light-independent pro 53.7 70 0.0015 32.9 8.7 36 89-126 352-387 (519)
229 cd07035 TPP_PYR_POX_like Pyrim 53.5 1.3E+02 0.0028 24.9 9.6 28 333-362 60-93 (155)
230 KOG1250 Threonine/serine dehyd 53.4 1.2E+02 0.0025 29.8 9.3 61 338-407 248-316 (457)
231 PRK09219 xanthine phosphoribos 53.1 23 0.00049 30.9 4.4 40 86-125 37-79 (189)
232 TIGR02195 heptsyl_trn_II lipop 52.5 47 0.001 31.7 7.0 37 88-127 242-278 (334)
233 COG1703 ArgK Putative periplas 51.8 1.6E+02 0.0035 27.8 9.7 101 3-125 58-172 (323)
234 PRK11914 diacylglycerol kinase 51.8 32 0.00069 32.5 5.6 81 258-362 12-96 (306)
235 PF02606 LpxK: Tetraacyldisacc 51.5 27 0.0006 33.4 5.1 35 2-36 43-77 (326)
236 cd02067 B12-binding B12 bindin 51.0 18 0.00039 28.6 3.2 34 2-35 5-38 (119)
237 cd01121 Sms Sms (bacterial rad 50.6 1.1E+02 0.0024 29.9 9.2 34 4-37 90-123 (372)
238 KOG2825 Putative arsenite-tran 50.4 17 0.00037 33.0 3.2 34 5-38 28-61 (323)
239 PRK08057 cobalt-precorrin-6x r 50.4 26 0.00057 32.0 4.5 36 90-125 181-221 (248)
240 PF00282 Pyridoxal_deC: Pyrido 50.3 31 0.00067 33.8 5.3 71 335-407 104-191 (373)
241 PRK08057 cobalt-precorrin-6x r 49.0 1.6E+02 0.0035 26.9 9.5 78 13-125 14-98 (248)
242 KOG3339 Predicted glycosyltran 49.0 18 0.00039 31.1 2.9 22 2-23 43-64 (211)
243 PF02585 PIG-L: GlcNAc-PI de-N 48.0 48 0.001 26.5 5.4 26 82-107 83-108 (128)
244 PF10093 DUF2331: Uncharacteri 47.3 2.8E+02 0.0062 27.1 11.5 93 267-362 190-290 (374)
245 PRK04940 hypothetical protein; 46.5 37 0.00081 29.3 4.6 32 99-130 60-93 (180)
246 PF10820 DUF2543: Protein of u 46.4 73 0.0016 22.4 5.0 45 397-449 36-80 (81)
247 COG1663 LpxK Tetraacyldisaccha 45.7 22 0.00047 33.8 3.3 35 2-36 55-89 (336)
248 PLN03064 alpha,alpha-trehalose 44.5 1E+02 0.0022 34.2 8.5 107 320-447 444-562 (934)
249 cd02070 corrinoid_protein_B12- 44.2 39 0.00085 29.7 4.6 34 2-35 88-121 (201)
250 COG3958 Transketolase, C-termi 44.0 1.4E+02 0.0031 27.9 8.0 54 341-405 256-312 (312)
251 TIGR02655 circ_KaiC circadian 43.8 53 0.0011 33.5 6.0 102 3-127 270-397 (484)
252 TIGR00147 lipid kinase, YegS/R 43.8 75 0.0016 29.7 6.8 81 258-362 5-91 (293)
253 cd01141 TroA_d Periplasmic bin 43.6 37 0.00081 29.2 4.3 34 93-126 63-99 (186)
254 cd02071 MM_CoA_mut_B12_BD meth 43.6 77 0.0017 25.2 5.8 35 2-36 5-39 (122)
255 KOG0081 GTPase Rab27, small G 43.3 60 0.0013 27.2 5.0 30 99-128 124-164 (219)
256 TIGR00345 arsA arsenite-activa 43.3 91 0.002 29.1 7.1 25 14-38 3-27 (284)
257 PRK10916 ADP-heptose:LPS hepto 42.9 60 0.0013 31.3 6.1 37 88-127 252-288 (348)
258 PRK13011 formyltetrahydrofolat 42.8 2.9E+02 0.0062 25.9 10.3 114 277-425 157-272 (286)
259 CHL00076 chlB photochlorophyll 42.8 41 0.00089 34.5 5.1 36 89-126 364-399 (513)
260 PRK13337 putative lipid kinase 42.7 79 0.0017 29.8 6.7 28 333-362 58-91 (304)
261 PRK07710 acetolactate synthase 42.6 1.2E+02 0.0027 31.6 8.7 28 332-361 78-111 (571)
262 PRK14476 nitrogenase molybdenu 42.3 1.3E+02 0.0027 30.5 8.4 32 90-125 364-395 (455)
263 TIGR00228 ruvC crossover junct 42.3 68 0.0015 27.0 5.4 48 80-127 38-101 (156)
264 TIGR01012 Sa_S2_E_A ribosomal 41.9 20 0.00044 31.3 2.3 33 98-130 107-142 (196)
265 TIGR03878 thermo_KaiC_2 KaiC d 41.7 55 0.0012 30.1 5.3 32 3-34 43-74 (259)
266 cd01976 Nitrogenase_MoFe_alpha 41.7 35 0.00077 34.0 4.3 37 88-126 358-394 (421)
267 KOG0832 Mitochondrial/chloropl 41.6 15 0.00032 32.7 1.4 108 8-129 92-206 (251)
268 PRK04020 rps2P 30S ribosomal p 41.6 20 0.00043 31.7 2.2 32 99-130 114-148 (204)
269 PRK10867 signal recognition pa 41.4 54 0.0012 32.8 5.5 37 2-38 106-143 (433)
270 COG2159 Predicted metal-depend 40.4 2E+02 0.0043 27.1 8.9 110 227-350 98-210 (293)
271 PF14626 RNase_Zc3h12a_2: Zc3h 40.2 37 0.0008 26.8 3.2 34 10-43 9-42 (122)
272 PLN02293 adenine phosphoribosy 40.0 57 0.0012 28.4 4.9 42 84-125 47-91 (187)
273 COG1797 CobB Cobyrinic acid a, 40.0 27 0.00059 34.4 3.1 26 4-29 9-34 (451)
274 cd03789 GT1_LPS_heptosyltransf 39.7 1.1E+02 0.0024 28.3 7.1 87 11-128 140-226 (279)
275 cd00316 Oxidoreductase_nitroge 39.5 1.9E+02 0.0042 28.3 9.2 36 88-125 337-372 (399)
276 PF10933 DUF2827: Protein of u 39.5 1.8E+02 0.004 28.0 8.3 91 317-428 254-349 (364)
277 TIGR01744 XPRTase xanthine pho 39.2 52 0.0011 28.8 4.5 40 86-125 37-79 (191)
278 PRK13982 bifunctional SbtC-lik 39.1 4E+02 0.0087 27.1 11.2 141 255-406 70-247 (475)
279 PRK11823 DNA repair protein Ra 39.1 36 0.00079 34.2 4.0 36 3-38 87-122 (446)
280 cd03114 ArgK-like The function 39.1 2.2E+02 0.0048 23.5 9.5 32 3-34 6-37 (148)
281 PRK13054 lipid kinase; Reviewe 39.0 1.3E+02 0.0027 28.4 7.5 68 271-362 17-92 (300)
282 PRK05595 replicative DNA helic 38.5 68 0.0015 32.3 5.8 36 3-38 208-244 (444)
283 PF01993 MTD: methylene-5,6,7, 38.3 61 0.0013 29.2 4.7 41 89-129 49-96 (276)
284 TIGR01278 DPOR_BchB light-inde 38.2 46 0.00099 34.2 4.6 37 89-127 354-390 (511)
285 PRK13010 purU formyltetrahydro 38.2 3.4E+02 0.0075 25.4 10.2 114 276-424 160-275 (289)
286 cd01981 Pchlide_reductase_B Pc 38.1 50 0.0011 33.0 4.8 37 89-127 360-396 (430)
287 PTZ00254 40S ribosomal protein 38.1 27 0.00059 31.8 2.6 32 99-130 118-152 (249)
288 PRK06276 acetolactate synthase 38.1 1.8E+02 0.0039 30.4 9.1 27 333-361 64-96 (586)
289 COG0801 FolK 7,8-dihydro-6-hyd 38.0 83 0.0018 26.6 5.2 34 258-291 3-36 (160)
290 TIGR00173 menD 2-succinyl-5-en 37.2 2.3E+02 0.005 28.3 9.4 27 333-361 64-96 (432)
291 COG2230 Cfa Cyclopropane fatty 36.8 17 0.00037 33.8 1.1 43 341-384 80-125 (283)
292 PRK08322 acetolactate synthase 36.4 1.5E+02 0.0032 30.7 8.2 26 336-361 65-96 (547)
293 PRK05234 mgsA methylglyoxal sy 36.3 1E+02 0.0022 25.5 5.5 85 8-125 14-112 (142)
294 PRK02649 ppnK inorganic polyph 36.0 37 0.0008 32.2 3.2 54 331-407 67-124 (305)
295 PF01075 Glyco_transf_9: Glyco 35.9 62 0.0013 29.2 4.7 85 11-129 124-212 (247)
296 PRK05579 bifunctional phosphop 35.7 3.3E+02 0.0071 27.0 9.9 140 256-406 7-182 (399)
297 PRK08155 acetolactate synthase 35.5 1.3E+02 0.0029 31.2 7.6 88 263-361 4-109 (564)
298 PRK06067 flagellar accessory p 35.4 34 0.00073 30.9 2.8 34 3-36 32-65 (234)
299 COG2910 Putative NADH-flavin r 35.4 32 0.0007 29.8 2.4 31 5-37 7-37 (211)
300 COG1052 LdhA Lactate dehydroge 35.3 1.7E+02 0.0037 28.0 7.6 106 256-403 147-252 (324)
301 COG1484 DnaC DNA replication p 35.2 22 0.00048 32.7 1.6 39 3-41 112-150 (254)
302 PRK08558 adenine phosphoribosy 34.9 54 0.0012 29.8 4.0 37 89-125 101-140 (238)
303 COG3140 Uncharacterized protei 34.8 1.1E+02 0.0025 20.4 4.3 32 415-446 12-43 (60)
304 PRK06456 acetolactate synthase 34.7 1.7E+02 0.0036 30.5 8.2 25 337-361 71-101 (572)
305 PRK02261 methylaspartate mutas 34.6 43 0.00093 27.5 3.1 37 2-38 9-45 (137)
306 TIGR00959 ffh signal recogniti 34.4 1.3E+02 0.0028 30.1 6.9 37 2-38 105-142 (428)
307 PF12146 Hydrolase_4: Putative 34.4 46 0.00099 24.3 2.9 29 2-30 21-49 (79)
308 PRK12311 rpsB 30S ribosomal pr 34.3 28 0.00061 33.2 2.2 32 99-130 152-186 (326)
309 PF02844 GARS_N: Phosphoribosy 34.3 74 0.0016 24.5 4.1 36 88-123 51-90 (100)
310 cd01715 ETF_alpha The electron 34.1 92 0.002 26.4 5.2 43 87-129 71-117 (168)
311 COG2086 FixA Electron transfer 34.1 82 0.0018 29.0 5.1 40 89-128 101-147 (260)
312 TIGR00416 sms DNA repair prote 34.0 76 0.0017 32.0 5.3 35 4-38 102-136 (454)
313 PRK13055 putative lipid kinase 33.2 1.5E+02 0.0033 28.4 7.1 82 258-362 6-93 (334)
314 PRK06849 hypothetical protein; 33.1 56 0.0012 32.1 4.2 69 11-107 15-84 (389)
315 PF02826 2-Hacid_dh_C: D-isome 33.0 48 0.001 28.5 3.3 106 255-403 36-143 (178)
316 PRK13059 putative lipid kinase 32.9 1.4E+02 0.003 28.1 6.6 29 332-362 56-90 (295)
317 PRK08527 acetolactate synthase 32.7 2.8E+02 0.006 28.9 9.4 27 333-361 67-99 (563)
318 COG0859 RfaF ADP-heptose:LPS h 32.5 1.4E+02 0.0029 28.7 6.6 87 10-129 194-280 (334)
319 TIGR00118 acolac_lg acetolacta 32.5 2.7E+02 0.0058 28.9 9.3 27 333-361 65-97 (558)
320 cd01980 Chlide_reductase_Y Chl 32.4 75 0.0016 31.6 5.0 33 92-126 343-375 (416)
321 TIGR01743 purR_Bsub pur operon 32.4 68 0.0015 29.7 4.3 39 87-125 116-157 (268)
322 TIGR00708 cobA cob(I)alamin ad 32.1 3.3E+02 0.0071 23.4 8.7 89 2-107 11-105 (173)
323 cd00984 DnaB_C DnaB helicase C 32.0 2.2E+02 0.0049 25.4 7.8 36 3-38 20-56 (242)
324 PRK09213 pur operon repressor; 31.9 69 0.0015 29.7 4.2 38 88-125 119-159 (271)
325 PRK09107 acetolactate synthase 31.8 4.1E+02 0.009 27.8 10.6 60 338-406 481-542 (595)
326 cd00529 RuvC_resolvase Hollida 31.7 1.4E+02 0.003 24.9 5.8 26 82-107 42-67 (154)
327 PF12363 DUF3647: Phage protei 31.6 1.2E+02 0.0026 23.8 5.1 60 372-440 52-111 (113)
328 cd01422 MGS Methylglyoxal synt 31.6 1.3E+02 0.0029 23.7 5.3 85 8-125 9-107 (115)
329 COG1090 Predicted nucleoside-d 31.5 2.2E+02 0.0048 26.5 7.2 32 4-37 4-35 (297)
330 PRK06732 phosphopantothenate-- 31.4 95 0.0021 28.0 5.0 20 14-33 30-49 (229)
331 PF03720 UDPG_MGDP_dh_C: UDP-g 31.3 58 0.0013 25.2 3.2 25 11-35 17-41 (106)
332 PF13450 NAD_binding_8: NAD(P) 31.3 59 0.0013 22.8 3.0 20 14-33 9-28 (68)
333 PF07905 PucR: Purine cataboli 31.2 2.1E+02 0.0046 22.7 6.6 54 245-308 35-90 (123)
334 PRK04539 ppnK inorganic polyph 31.0 91 0.002 29.4 5.0 57 328-407 64-124 (296)
335 PHA02754 hypothetical protein; 30.8 86 0.0019 21.1 3.3 26 400-431 6-31 (67)
336 PLN02935 Bifunctional NADH kin 30.8 50 0.0011 33.4 3.3 53 331-407 261-318 (508)
337 TIGR00745 apbA_panE 2-dehydrop 30.8 31 0.00067 32.2 1.9 29 15-43 5-33 (293)
338 COG1927 Mtd Coenzyme F420-depe 30.8 1E+02 0.0023 27.1 4.7 40 90-129 51-97 (277)
339 PRK13057 putative lipid kinase 30.3 94 0.002 29.0 5.0 30 331-362 49-82 (287)
340 PF00070 Pyr_redox: Pyridine n 30.3 70 0.0015 23.0 3.3 24 12-35 10-33 (80)
341 PRK06270 homoserine dehydrogen 30.3 3.6E+02 0.0079 25.9 9.2 60 325-385 80-151 (341)
342 CHL00067 rps2 ribosomal protei 30.2 36 0.00078 30.7 2.1 33 99-131 161-196 (230)
343 PRK08305 spoVFB dipicolinate s 30.1 33 0.0007 30.1 1.7 35 6-40 14-49 (196)
344 cd01018 ZntC Metal binding pro 30.1 2.3E+02 0.0049 26.1 7.5 77 26-129 171-250 (266)
345 PF08323 Glyco_transf_5: Starc 30.0 39 0.00085 30.8 2.3 22 13-34 22-43 (245)
346 TIGR02015 BchY chlorophyllide 29.9 62 0.0014 32.3 3.9 32 93-126 349-380 (422)
347 PRK05299 rpsB 30S ribosomal pr 29.8 35 0.00076 31.4 2.0 32 99-130 157-191 (258)
348 PF10649 DUF2478: Protein of u 29.8 3.4E+02 0.0074 22.9 9.4 119 4-131 6-135 (159)
349 PRK13810 orotate phosphoribosy 29.8 85 0.0018 27.3 4.3 39 87-125 61-102 (187)
350 PRK08760 replicative DNA helic 29.7 78 0.0017 32.1 4.6 35 3-37 236-271 (476)
351 cd01147 HemV-2 Metal binding p 29.7 83 0.0018 28.6 4.6 35 93-127 68-106 (262)
352 PF02310 B12-binding: B12 bind 29.6 61 0.0013 25.4 3.2 31 3-33 7-37 (121)
353 PRK05858 hypothetical protein; 29.5 3E+02 0.0066 28.4 9.1 28 332-361 67-100 (542)
354 PRK04885 ppnK inorganic polyph 29.4 42 0.00092 31.0 2.5 29 332-362 35-69 (265)
355 cd01972 Nitrogenase_VnfE_like 29.4 74 0.0016 31.8 4.4 37 89-125 363-399 (426)
356 PF09001 DUF1890: Domain of un 29.4 23 0.0005 28.8 0.6 30 12-41 15-44 (139)
357 PRK04761 ppnK inorganic polyph 29.2 44 0.00095 30.5 2.5 29 332-362 25-57 (246)
358 PF03701 UPF0181: Uncharacteri 29.1 1.5E+02 0.0033 19.5 4.2 33 414-446 11-43 (51)
359 TIGR03702 lip_kinase_YegS lipi 29.1 2.2E+02 0.0048 26.6 7.3 29 332-362 52-88 (293)
360 PRK07525 sulfoacetaldehyde ace 29.1 3.3E+02 0.0071 28.5 9.3 27 335-361 69-101 (588)
361 cd01143 YvrC Periplasmic bindi 28.9 84 0.0018 27.0 4.2 33 95-127 56-90 (195)
362 COG0041 PurE Phosphoribosylcar 28.9 3.5E+02 0.0076 22.7 11.6 141 258-429 4-150 (162)
363 PRK08199 thiamine pyrophosphat 28.9 3.8E+02 0.0082 27.8 9.7 27 333-361 72-104 (557)
364 PF14336 DUF4392: Domain of un 28.8 27 0.00058 32.8 1.0 31 12-42 64-94 (291)
365 PF07544 Med9: RNA polymerase 28.6 1.5E+02 0.0033 21.8 4.9 35 414-448 31-65 (83)
366 PF03808 Glyco_tran_WecB: Glyc 28.6 3.7E+02 0.008 22.8 9.3 87 201-295 50-136 (172)
367 cd01017 AdcA Metal binding pro 28.6 1.8E+02 0.0038 27.1 6.6 78 25-127 171-251 (282)
368 TIGR01286 nifK nitrogenase mol 28.4 81 0.0018 32.4 4.5 35 89-125 427-461 (515)
369 PRK07524 hypothetical protein; 28.3 3.6E+02 0.0077 27.8 9.3 27 333-361 65-97 (535)
370 TIGR01011 rpsB_bact ribosomal 28.2 40 0.00086 30.4 2.0 32 99-130 155-189 (225)
371 COG2327 WcaK Polysaccharide py 28.2 2.2E+02 0.0048 27.9 7.1 77 327-419 280-357 (385)
372 PRK06882 acetolactate synthase 28.1 3.2E+02 0.007 28.4 9.0 27 335-361 68-100 (574)
373 PF01497 Peripla_BP_2: Peripla 28.1 61 0.0013 28.9 3.3 37 93-129 54-93 (238)
374 PRK02304 adenine phosphoribosy 27.9 1E+02 0.0022 26.4 4.4 38 88-125 40-80 (175)
375 PRK11269 glyoxylate carboligas 27.8 2.5E+02 0.0053 29.5 8.1 27 335-361 69-101 (591)
376 PRK15438 erythronate-4-phospha 27.8 3E+02 0.0066 27.0 8.1 60 256-343 117-176 (378)
377 PRK06048 acetolactate synthase 27.6 2.9E+02 0.0063 28.7 8.5 110 275-406 12-150 (561)
378 COG2874 FlaH Predicted ATPases 27.6 53 0.0011 29.3 2.5 86 7-111 39-136 (235)
379 KOG1344 Predicted histone deac 27.5 1.8E+02 0.004 26.0 5.8 44 87-130 236-302 (324)
380 PF03641 Lysine_decarbox: Poss 27.5 1.7E+02 0.0036 23.8 5.4 43 318-361 37-91 (133)
381 PF00920 ILVD_EDD: Dehydratase 27.4 59 0.0013 33.1 3.2 51 79-129 59-114 (521)
382 COG0299 PurN Folate-dependent 27.4 77 0.0017 27.7 3.4 29 99-127 29-58 (200)
383 cd01985 ETF The electron trans 27.3 1.1E+02 0.0024 26.2 4.6 41 87-127 79-123 (181)
384 cd07037 TPP_PYR_MenD Pyrimidin 27.3 46 0.001 28.2 2.1 29 332-362 60-94 (162)
385 COG3340 PepE Peptidase E [Amin 27.2 4.5E+02 0.0098 23.5 8.1 43 246-289 24-66 (224)
386 PRK02155 ppnK NAD(+)/NADH kina 27.0 56 0.0012 30.7 2.9 54 331-407 62-119 (291)
387 cd01425 RPS2 Ribosomal protein 27.0 43 0.00094 29.3 2.0 32 99-130 127-161 (193)
388 PRK14092 2-amino-4-hydroxy-6-h 27.0 1.6E+02 0.0035 25.0 5.3 31 254-284 5-35 (163)
389 TIGR01859 fruc_bis_ald_ fructo 26.9 5.3E+02 0.011 24.1 9.3 78 268-362 23-105 (282)
390 TIGR01284 alt_nitrog_alph nitr 26.8 68 0.0015 32.4 3.6 35 89-125 385-419 (457)
391 PRK04328 hypothetical protein; 26.7 3.7E+02 0.008 24.4 8.2 96 4-107 31-136 (249)
392 cd03818 GT1_ExpC_like This fam 26.7 2.6E+02 0.0057 27.2 7.8 26 270-295 9-34 (396)
393 PF13460 NAD_binding_10: NADH( 26.5 64 0.0014 27.4 3.0 87 4-129 4-99 (183)
394 PRK12595 bifunctional 3-deoxy- 26.5 5.3E+02 0.012 25.1 9.5 125 264-406 124-250 (360)
395 TIGR02113 coaC_strep phosphopa 26.5 43 0.00093 28.9 1.8 36 6-41 9-44 (177)
396 PF02075 RuvC: Crossover junct 26.4 1.2E+02 0.0027 25.2 4.5 49 80-128 39-103 (149)
397 PF01012 ETF: Electron transfe 26.4 63 0.0014 27.2 2.9 91 12-127 19-122 (164)
398 PRK08410 2-hydroxyacid dehydro 26.3 3.3E+02 0.0072 25.8 8.0 102 255-403 145-248 (311)
399 cd01714 ETF_beta The electron 26.2 1.1E+02 0.0023 27.1 4.3 41 87-127 96-143 (202)
400 PLN02948 phosphoribosylaminoim 26.2 7.7E+02 0.017 25.8 12.8 144 256-430 410-559 (577)
401 PF02558 ApbA: Ketopantoate re 26.2 37 0.00081 28.0 1.4 30 14-43 11-40 (151)
402 cd01977 Nitrogenase_VFe_alpha 26.1 73 0.0016 31.7 3.7 34 90-125 349-382 (415)
403 PRK09165 replicative DNA helic 26.0 1.4E+02 0.0029 30.6 5.6 37 3-39 224-275 (497)
404 TIGR00655 PurU formyltetrahydr 26.0 5.5E+02 0.012 24.0 9.3 114 276-424 151-266 (280)
405 TIGR00750 lao LAO/AO transport 26.0 5.6E+02 0.012 24.1 9.5 34 3-36 41-74 (300)
406 PRK07449 2-succinyl-5-enolpyru 25.8 2.1E+02 0.0045 29.8 7.1 80 271-361 9-105 (568)
407 PF01297 TroA: Periplasmic sol 25.8 76 0.0017 29.0 3.5 80 23-127 148-230 (256)
408 PRK05986 cob(I)alamin adenolsy 25.7 4.5E+02 0.0098 23.0 8.1 91 1-107 27-123 (191)
409 PRK06932 glycerate dehydrogena 25.6 3.1E+02 0.0067 26.1 7.6 102 255-402 147-248 (314)
410 PF00391 PEP-utilizers: PEP-ut 25.6 69 0.0015 23.3 2.6 29 98-126 29-60 (80)
411 PRK06321 replicative DNA helic 25.5 2.2E+02 0.0047 29.0 6.9 36 3-38 233-269 (472)
412 PRK14106 murD UDP-N-acetylmura 25.5 2.2E+02 0.0047 28.5 7.0 27 6-34 12-38 (450)
413 cd03146 GAT1_Peptidase_E Type 25.5 3.1E+02 0.0068 24.2 7.3 44 246-291 20-66 (212)
414 PF09334 tRNA-synt_1g: tRNA sy 25.4 49 0.0011 32.6 2.3 29 7-35 16-47 (391)
415 PRK11199 tyrA bifunctional cho 25.4 2.7E+02 0.0058 27.2 7.4 20 15-34 113-132 (374)
416 TIGR00521 coaBC_dfp phosphopan 25.4 6.6E+02 0.014 24.8 10.1 57 350-407 108-179 (390)
417 TIGR01162 purE phosphoribosyla 25.4 4.1E+02 0.0089 22.4 11.7 135 261-429 3-146 (156)
418 PF04244 DPRP: Deoxyribodipyri 25.2 70 0.0015 28.8 3.0 26 9-34 47-72 (224)
419 TIGR01862 N2-ase-Ialpha nitrog 25.1 86 0.0019 31.5 4.0 35 89-125 377-411 (443)
420 TIGR03457 sulphoacet_xsc sulfo 24.9 5.5E+02 0.012 26.8 10.1 28 332-361 64-97 (579)
421 TIGR01282 nifD nitrogenase mol 24.8 49 0.0011 33.5 2.2 36 88-125 393-428 (466)
422 cd06330 PBP1_Arsenic_SBP_like 24.8 5.5E+02 0.012 24.2 9.5 41 87-127 55-99 (346)
423 PF01210 NAD_Gly3P_dh_N: NAD-d 24.8 68 0.0015 26.8 2.8 21 14-34 12-32 (157)
424 PRK05114 hypothetical protein; 24.8 2.1E+02 0.0046 19.4 4.3 32 414-445 11-42 (59)
425 PRK14478 nitrogenase molybdenu 24.8 94 0.002 31.6 4.2 35 88-124 382-416 (475)
426 PF02441 Flavoprotein: Flavopr 24.8 33 0.00071 27.7 0.8 35 8-42 11-45 (129)
427 PF06792 UPF0261: Uncharacteri 24.8 3.9E+02 0.0085 26.4 8.1 98 254-365 183-281 (403)
428 PF06180 CbiK: Cobalt chelatas 24.7 1E+02 0.0023 28.4 4.1 39 256-294 1-42 (262)
429 PRK06276 acetolactate synthase 24.7 5.8E+02 0.012 26.7 10.2 59 338-406 470-531 (586)
430 PRK12361 hypothetical protein; 24.7 2.3E+02 0.005 29.3 7.1 28 333-362 298-329 (547)
431 PLN02470 acetolactate synthase 24.6 4.9E+02 0.011 27.2 9.6 102 277-407 436-546 (585)
432 COG2179 Predicted hydrolase of 24.6 1.2E+02 0.0026 25.8 4.0 43 87-129 95-141 (175)
433 cd01421 IMPCH Inosine monophos 24.6 1.8E+02 0.0038 25.4 5.1 37 12-55 12-48 (187)
434 KOG2199 Signal transducing ada 24.5 1.5E+02 0.0032 28.9 5.0 63 378-446 75-138 (462)
435 TIGR03646 YtoQ_fam YtoQ family 24.5 3.1E+02 0.0066 22.3 6.0 88 269-361 9-110 (144)
436 TIGR02482 PFKA_ATP 6-phosphofr 24.3 61 0.0013 30.6 2.6 38 328-365 85-126 (301)
437 PRK01231 ppnK inorganic polyph 24.2 1.4E+02 0.0029 28.2 4.8 54 331-407 61-118 (295)
438 PRK07206 hypothetical protein; 24.1 1.9E+02 0.0042 28.5 6.3 34 89-122 60-96 (416)
439 KOG4127 Renal dipeptidase [Pos 24.0 1E+02 0.0022 29.6 3.9 79 264-353 245-324 (419)
440 PRK06027 purU formyltetrahydro 24.0 5.6E+02 0.012 24.0 8.9 115 276-425 156-272 (286)
441 PF00289 CPSase_L_chain: Carba 24.0 1E+02 0.0022 24.1 3.4 69 272-351 12-89 (110)
442 PRK06487 glycerate dehydrogena 23.9 2.9E+02 0.0063 26.3 7.1 101 255-402 148-248 (317)
443 PF01372 Melittin: Melittin; 23.9 14 0.0003 20.1 -1.0 17 343-359 1-17 (26)
444 PRK08978 acetolactate synthase 23.9 6.1E+02 0.013 26.2 10.1 101 277-407 411-514 (548)
445 PRK03094 hypothetical protein; 23.7 74 0.0016 23.3 2.3 21 13-33 10-30 (80)
446 PRK08335 translation initiatio 23.7 1E+02 0.0022 28.7 3.8 22 109-130 201-222 (275)
447 PRK12315 1-deoxy-D-xylulose-5- 23.7 5.4E+02 0.012 27.0 9.6 53 340-405 524-580 (581)
448 COG4859 Uncharacterized protei 23.6 85 0.0018 23.4 2.6 20 255-274 59-78 (105)
449 COG4567 Response regulator con 23.4 2.5E+02 0.0055 23.6 5.5 87 13-129 22-113 (182)
450 TIGR00421 ubiX_pad polyprenyl 23.2 73 0.0016 27.6 2.6 29 12-40 14-42 (181)
451 PRK08236 hypothetical protein; 23.2 85 0.0018 27.9 3.1 37 92-128 146-183 (212)
452 PRK02645 ppnK inorganic polyph 23.1 64 0.0014 30.6 2.5 30 331-362 56-89 (305)
453 TIGR01162 purE phosphoribosyla 23.0 3.9E+02 0.0084 22.5 6.7 104 268-405 36-141 (156)
454 PRK14077 pnk inorganic polypho 22.9 69 0.0015 30.0 2.6 31 329-361 61-95 (287)
455 COG1154 Dxs Deoxyxylulose-5-ph 22.9 7E+02 0.015 26.1 9.6 53 341-407 565-624 (627)
456 TIGR03609 S_layer_CsaB polysac 22.9 4.2E+02 0.0091 24.6 8.1 113 256-379 172-290 (298)
457 PRK13194 pyrrolidone-carboxyla 22.9 1.8E+02 0.0038 25.9 5.0 20 88-107 49-68 (208)
458 TIGR01860 VNFD nitrogenase van 22.8 1E+02 0.0022 31.2 4.0 31 91-123 389-419 (461)
459 PRK00455 pyrE orotate phosphor 22.8 1.6E+02 0.0034 25.9 4.8 38 88-125 51-93 (202)
460 PRK07979 acetolactate synthase 22.7 5.2E+02 0.011 26.9 9.4 27 335-361 68-100 (574)
461 PRK03708 ppnK inorganic polyph 22.5 59 0.0013 30.3 2.1 29 332-362 57-88 (277)
462 PLN02775 Probable dihydrodipic 22.4 1.3E+02 0.0028 28.1 4.3 33 98-130 78-115 (286)
463 PF08433 KTI12: Chromatin asso 22.3 4.2E+02 0.009 24.6 7.6 99 2-134 7-112 (270)
464 PRK07773 replicative DNA helic 22.3 1.3E+02 0.0028 33.4 4.9 36 3-38 224-260 (886)
465 PRK15411 rcsA colanic acid cap 22.3 2E+02 0.0043 25.4 5.3 39 90-128 38-86 (207)
466 PF07015 VirC1: VirC1 protein; 22.3 1.1E+02 0.0024 27.6 3.6 35 5-39 11-45 (231)
467 PRK06965 acetolactate synthase 22.3 7.8E+02 0.017 25.7 10.6 59 338-406 488-549 (587)
468 TIGR01509 HAD-SF-IA-v3 haloaci 22.3 2.4E+02 0.0051 23.7 5.8 24 13-36 90-113 (183)
469 PRK07586 hypothetical protein; 22.0 6.4E+02 0.014 25.7 9.8 28 333-362 65-98 (514)
470 PRK00257 erythronate-4-phospha 21.9 4.6E+02 0.01 25.7 8.2 61 256-344 117-177 (381)
471 TIGR01283 nifE nitrogenase mol 21.9 1.3E+02 0.0028 30.3 4.6 35 89-125 385-419 (456)
472 PRK08979 acetolactate synthase 21.8 8.3E+02 0.018 25.4 10.7 60 338-406 472-533 (572)
473 PF13499 EF-hand_7: EF-hand do 21.7 2.2E+02 0.0048 19.2 4.5 53 388-443 13-65 (66)
474 COG2099 CobK Precorrin-6x redu 21.6 6.4E+02 0.014 23.2 9.3 38 88-125 55-99 (257)
475 KOG0069 Glyoxylate/hydroxypyru 21.6 6.8E+02 0.015 24.1 8.9 105 255-402 162-268 (336)
476 TIGR02700 flavo_MJ0208 archaeo 21.5 69 0.0015 29.0 2.3 39 5-43 7-48 (234)
477 PRK13196 pyrrolidone-carboxyla 21.4 1.7E+02 0.0037 26.0 4.7 20 88-107 50-69 (211)
478 PLN03139 formate dehydrogenase 21.4 4.2E+02 0.009 26.1 7.7 69 255-346 199-267 (386)
479 cd01840 SGNH_hydrolase_yrhL_li 21.3 1.6E+02 0.0035 24.1 4.4 38 256-294 51-88 (150)
480 PRK08617 acetolactate synthase 21.1 4.6E+02 0.0099 27.1 8.5 26 336-361 69-100 (552)
481 PRK02231 ppnK inorganic polyph 21.1 89 0.0019 29.1 2.9 33 327-361 37-73 (272)
482 COG4566 TtrR Response regulato 21.0 5.7E+02 0.012 22.4 10.0 51 350-407 72-122 (202)
483 PRK08978 acetolactate synthase 20.9 2.4E+02 0.0053 29.1 6.5 28 332-361 63-96 (548)
484 PRK06457 pyruvate dehydrogenas 20.8 2.5E+02 0.0055 29.0 6.6 28 332-361 64-97 (549)
485 PRK07574 formate dehydrogenase 20.8 3.4E+02 0.0075 26.7 7.0 72 256-350 193-264 (385)
486 PLN02880 tyrosine decarboxylas 20.8 1.7E+02 0.0037 29.8 5.2 70 335-405 147-234 (490)
487 PRK15409 bifunctional glyoxyla 20.8 3.6E+02 0.0078 25.8 7.1 66 256-346 146-212 (323)
488 TIGR03457 sulphoacet_xsc sulfo 20.7 6.9E+02 0.015 26.0 9.8 59 338-406 481-542 (579)
489 PRK15469 ghrA bifunctional gly 20.7 7.3E+02 0.016 23.5 10.2 67 256-348 137-204 (312)
490 TIGR01504 glyox_carbo_lig glyo 20.7 7.7E+02 0.017 25.8 10.1 61 338-406 469-539 (588)
491 cd01968 Nitrogenase_NifE_I Nit 20.6 1.3E+02 0.0029 29.8 4.2 35 89-125 346-380 (410)
492 PRK12560 adenine phosphoribosy 20.6 1.6E+02 0.0035 25.6 4.3 36 89-125 42-80 (187)
493 TIGR03837 efp_adjacent_2 conse 20.5 1.2E+02 0.0027 29.3 3.7 91 267-360 188-286 (371)
494 PRK07979 acetolactate synthase 20.4 9.1E+02 0.02 25.1 10.6 59 338-406 472-533 (574)
495 PF03698 UPF0180: Uncharacteri 20.4 91 0.002 22.9 2.2 22 13-34 10-31 (80)
496 TIGR01918 various_sel_PB selen 20.3 2.9E+02 0.0063 27.4 6.2 49 85-133 322-378 (431)
497 cd02013 TPP_Xsc_like Thiamine 20.3 5.7E+02 0.012 22.1 10.2 59 338-406 104-164 (196)
498 CHL00099 ilvB acetohydroxyacid 20.2 9E+02 0.02 25.2 10.5 61 338-406 481-543 (585)
499 TIGR01861 ANFD nitrogenase iro 20.1 1.3E+02 0.0027 31.0 4.0 32 92-125 391-422 (513)
500 PF02571 CbiJ: Precorrin-6x re 20.1 1.1E+02 0.0024 28.0 3.3 38 88-125 55-99 (249)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-64 Score=496.21 Aligned_cols=440 Identities=34% Similarity=0.612 Sum_probs=338.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC--CCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSN--LHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g--~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+||||++||++|++.||+.|+.||+.|||++++.....+.+.. ..+. ++++.+|++..+++|.+.+...+.......
T Consensus 11 l~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~-i~~~~lp~p~~dglp~~~~~~~~~~~~~~~ 89 (472)
T PLN02670 11 MFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSS-ITLVSFPLPSVPGLPSSAESSTDVPYTKQQ 89 (472)
T ss_pred EeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCC-eeEEECCCCccCCCCCCcccccccchhhHH
Confidence 5899999999999999999999999999999998765554321 1122 999999988778888665543333211123
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC--CCCCCC
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT--DNDLLR 155 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (449)
.+......+.+.+++++++.+|+|||+|. .+|+..+|+++|||++.++++++..++.+.++.......... ...+..
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (472)
T PLN02670 90 LLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFTV 169 (472)
T ss_pred HHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccccccC
Confidence 44455556778888888888899999999 999999999999999999999988777765443221111111 111111
Q ss_pred CCCCCCCC-ccccCchhhchhhhhhh--ccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCc
Q 039043 156 PPQGFPTS-KIRLRAHEARGLAAATV--KEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGP 232 (449)
Q Consensus 156 ~~~~~p~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp 232 (449)
.+..+|.. ...++. .+++.+.. .........+.+....+.+++++++|||.+||+.+++.++..++++++.|||
T Consensus 170 ~p~~~P~~~~~~~~~---~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGP 246 (472)
T PLN02670 170 VPPWVPFESNIVFRY---HEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGF 246 (472)
T ss_pred CCCcCCCCccccccH---HHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEec
Confidence 11122321 111222 33333321 0111123333344445677889999999999999999987766568999999
Q ss_pred cCCC--C-CC-cc----chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-Ccccc
Q 039043 233 ALPE--S-PR-FA----LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGH-DTIES 303 (449)
Q Consensus 233 ~~~~--~-~~-~~----~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-~~~~~ 303 (449)
+... . .. .. ...++.+|||.+++++||||||||+..++.+++.+++.+|+.++.+|||++...... .+...
T Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~ 326 (472)
T PLN02670 247 LPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALE 326 (472)
T ss_pred CCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhh
Confidence 9653 1 11 10 114688999999888999999999999999999999999999999999999863211 11234
Q ss_pred CCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 304 ALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 304 ~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
.+|++|..+.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++. |+|+.+
T Consensus 327 ~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~-g~Gv~l 405 (472)
T PLN02670 327 MLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGK-KLGLEV 405 (472)
T ss_pred cCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHc-CeeEEe
Confidence 6999999998888999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred eecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
...++++.++.++|+++|+++|.+ +.|.+||+||+++++.+++.++..+++++|++++.+++
T Consensus 406 ~~~~~~~~~~~e~i~~av~~vm~~---~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 406 PRDERDGSFTSDSVAESVRLAMVD---DAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred eccccCCcCcHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 764323458999999999999987 55679999999999999999999999999999998764
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-64 Score=495.78 Aligned_cols=430 Identities=49% Similarity=0.940 Sum_probs=335.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
++|||++||++|++.||+.|+.+||+|||++++.+...+.+.+..+..+.+..+|++..++++.+.+...++.......+
T Consensus 9 ~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~ 88 (442)
T PLN02208 9 MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLL 88 (442)
T ss_pred EecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHHHHHHH
Confidence 58999999999999999999999999999999988877766554332378888886544577765443222222233345
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
......+.+.+.+++++.+|||||+|++.|+..+|+++|||++.++++++.... +.+.+. .....+.+++
T Consensus 89 ~~~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---------~~~~~~~pgl 158 (442)
T PLN02208 89 SEALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---------GKLGVPPPGY 158 (442)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---------cccCCCCCCC
Confidence 555667788899999988999999999778999999999999999999987654 333221 0001123444
Q ss_pred CCCccccCchhhchhhhhhhccCCCchH-HHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCC-
Q 039043 161 PTSKIRLRAHEARGLAAATVKEFGGGLS-FAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESP- 238 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~- 238 (449)
|.....++...++.+ . .....+. ...++......++.+++|||.+||+++.+.+...+.++++.|||+....+
T Consensus 159 p~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~ 233 (442)
T PLN02208 159 PSSKVLFRENDAHAL----A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDT 233 (442)
T ss_pred CCcccccCHHHcCcc----c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCC
Confidence 431111222222221 1 1111122 22233345667899999999999999999988777789999999976433
Q ss_pred CccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeE
Q 039043 239 RFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGF 318 (449)
Q Consensus 239 ~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 318 (449)
..+++.++.+|||.++++++|||||||+..++.+++.+++.+++.++.+++|+++......+....+|+||+.+.+++|+
T Consensus 234 ~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~ 313 (442)
T PLN02208 234 SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGV 313 (442)
T ss_pred CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCc
Confidence 13357789999999988899999999999999999999999999999999999986422111235789999999888999
Q ss_pred EEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHH
Q 039043 319 IHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 319 ~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.||+|+.++..+ ++.++.++|.
T Consensus 314 ~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~~~~~~~~l~ 392 (442)
T PLN02208 314 VWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-TGWFSKESLS 392 (442)
T ss_pred EeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc-CCcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887559999997542 3468999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 399 KAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 399 ~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
++|+++|++. ++.++++|++++++++.+.+.|++.+.+++|++++++.
T Consensus 393 ~ai~~~m~~~-~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 393 NAIKSVMDKD-SDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHHHhcCC-chhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 9999999861 14578899999999999998899999999999999765
No 3
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-63 Score=490.68 Aligned_cols=432 Identities=48% Similarity=0.918 Sum_probs=335.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
+||+|++||++|++.||+.|+.+|++|||++++.+...++..+..+..+.|..+++|..+++|.+.+...++.......+
T Consensus 9 lvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~~~~~ 88 (446)
T PLN00414 9 MYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNSTKKPI 88 (446)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhHHHHH
Confidence 58999999999999999999999999999999988776655443222288988877766788776544433332223345
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
......+.+.+.++++..+|||||+|+++|+..+|+++|||++.|+++++...+++.++.. . ...+.+++
T Consensus 89 ~~a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---~-------~~~~~pg~ 158 (446)
T PLN00414 89 FDAMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---E-------LGFPPPDY 158 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh---h-------cCCCCCCC
Confidence 5556667788888888889999999997899999999999999999999988777665321 0 01123344
Q ss_pred CCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCCC-
Q 039043 161 PTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPR- 239 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~- 239 (449)
|.....++..... ++..+. .....+.+.......++.+++|||.+||+.+++.+...++++++.|||+......
T Consensus 159 p~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~ 233 (446)
T PLN00414 159 PLSKVALRGHDAN-VCSLFA----NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNK 233 (446)
T ss_pred CCCcCcCchhhcc-cchhhc----ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccc
Confidence 4311111111111 111111 1123334444566778999999999999999998877655679999999643211
Q ss_pred --ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 240 --FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 240 --~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
.....++.+|||.+++++||||||||+...+.+++.+++.+|+.++.+|+|++.......+..+.+|+||+.+.++++
T Consensus 234 ~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g 313 (446)
T PLN00414 234 SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG 313 (446)
T ss_pred cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC
Confidence 112346889999999999999999999999999999999999999999999998642211123579999999999999
Q ss_pred EEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHH
Q 039043 318 FIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGV 397 (449)
Q Consensus 318 ~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l 397 (449)
+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+...+ ++.++.++|
T Consensus 314 ~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i 392 (446)
T PLN00414 314 IVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESL 392 (446)
T ss_pred eEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975559999996431 235899999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhccC
Q 039043 398 CKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLLN 449 (449)
Q Consensus 398 ~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (449)
+++|+++|.+. ++.++++|++++++++.+.+.||+...+++|+++++++++
T Consensus 393 ~~~v~~~m~~~-~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~~~ 443 (446)
T PLN00414 393 RDTVKSVMDKD-SEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENEVN 443 (446)
T ss_pred HHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc
Confidence 99999999761 2456789999999999999888856779999999987653
No 4
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-63 Score=483.50 Aligned_cols=436 Identities=50% Similarity=0.953 Sum_probs=331.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
+||||++||++|++.||+.|+.+|+.|||++++.....+.+....+..+.+..++++..+++|.+.+...++.......+
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~~~~~~ 89 (453)
T PLN02764 10 MYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVTSADLL 89 (453)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChhHHHHH
Confidence 58999999999999999999999999999999987655544211111133444444434577766554444443333455
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
......+.+.+.+++++.+|||||+|+..|+..+|+++|||++.|+++++..++++..+. .....+.+++
T Consensus 90 ~~a~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~----------~~~~~~~pgl 159 (453)
T PLN02764 90 MSAMDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPG----------GELGVPPPGY 159 (453)
T ss_pred HHHHHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhccc----------ccCCCCCCCC
Confidence 555666778899999888899999999779999999999999999999998777664310 0001122344
Q ss_pred CCCccccCchhhchhhhhhh-ccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCCC
Q 039043 161 PTSKIRLRAHEARGLAAATV-KEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPR 239 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~ 239 (449)
|.....++...++.+..... ...........++......++.+++|||.+||+++++.+....+++++.|||+......
T Consensus 160 p~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~ 239 (453)
T PLN02764 160 PSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDK 239 (453)
T ss_pred CCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCccc
Confidence 42111122222222111000 00011123444454566778899999999999999998876545679999999653211
Q ss_pred -ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeE
Q 039043 240 -FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGF 318 (449)
Q Consensus 240 -~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 318 (449)
...+.++.+|||.+++++||||||||+..++.+++.+++.+|+.++.+|+|+++......+....+|+||+.+.+++++
T Consensus 240 ~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~ 319 (453)
T PLN02764 240 TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGV 319 (453)
T ss_pred cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCc
Confidence 1234579999999999999999999999999999999999999999999999986422111245799999999888999
Q ss_pred EEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHH
Q 039043 319 IHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 319 ~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+...+ .+.++.++|+
T Consensus 320 v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~ 398 (453)
T PLN02764 320 VWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLR 398 (453)
T ss_pred EEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976559999875421 1248999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 399 KAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 399 ~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
++|+++|++. ++.++++|++++++++.++++|++.+.+++|++++++..
T Consensus 399 ~av~~vm~~~-~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 399 DAINSVMKRD-SEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HHHHHHhcCC-chhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 9999999861 245788999999999999999999999999999998753
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.4e-62 Score=484.24 Aligned_cols=435 Identities=28% Similarity=0.457 Sum_probs=331.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC-CCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSN-LHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g-~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
++|||++||++|++.||+.|+.+|+.|||++++.....++... ..++ ++++.+|+|..+++|.+.+...+.+......
T Consensus 14 l~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~-i~~~~lp~P~~~~lPdG~~~~~~~~~~~~~~ 92 (477)
T PLN02863 14 VFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPS-IETLVLPFPSHPSIPSGVENVKDLPPSGFPL 92 (477)
T ss_pred EecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCC-eeEEeCCCCCcCCCCCCCcChhhcchhhHHH
Confidence 5899999999999999999999999999999998876655431 1233 8999999887778887766554444334445
Q ss_pred HHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCC-CCCC
Q 039043 80 LMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDN-DLLR 155 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (449)
+......+.+.+.+++++. +|+|||+|. .+|+..+|+++|||++.|++++++.++.+++++........... +...
T Consensus 93 ~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (477)
T PLN02863 93 MIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNEIL 172 (477)
T ss_pred HHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccccccccc
Confidence 5555556677777777763 579999999 99999999999999999999999988887776432111100000 0011
Q ss_pred CCCCCCCCccccCchhhchhhhhhhc--cCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC-CCeEEeCc
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVK--EFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG-KPVILSGP 232 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~vGp 232 (449)
....+|+ +......+++..+.. ..........+.......++.+++|||.+||+++++.++..++ ++++.|||
T Consensus 173 ~~~~iPg----~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGP 248 (477)
T PLN02863 173 SFSKIPN----CPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGP 248 (477)
T ss_pred ccCCCCC----CCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCC
Confidence 1123443 122222333332210 1111112222233334567789999999999999999987664 57999999
Q ss_pred cCCCCC-C-------c--c-chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcc
Q 039043 233 ALPESP-R-------F--A-LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTI 301 (449)
Q Consensus 233 ~~~~~~-~-------~--~-~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 301 (449)
+..... . . . .++++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||+++........
T Consensus 249 L~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~ 328 (477)
T PLN02863 249 ILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESD 328 (477)
T ss_pred CcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccc
Confidence 964321 0 0 0 135699999999889999999999999999999999999999999999999854321102
Q ss_pred ccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 302 ESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 302 ~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
...+|+++..+.+..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+
T Consensus 329 ~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~ 408 (477)
T PLN02863 329 YSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAV 408 (477)
T ss_pred hhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeE
Confidence 34689999888888899999999999999999999999999999999999999999999999999999999876669999
Q ss_pred EeeecCCCCcccHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHhc
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVI-DDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 447 (449)
++...+ .+.++.+++.++|+++| ++ ++||+||+++++.+++ +|++.+.+++|++.+.++
T Consensus 409 ~~~~~~-~~~~~~~~v~~~v~~~m~~~------~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 409 RVCEGA-DTVPDSDELARVFMESVSEN------QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred EeccCC-CCCcCHHHHHHHHHHHhhcc------HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 996421 23478999999999999 45 8999999999999654 488999999999999864
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2e-60 Score=468.73 Aligned_cols=428 Identities=21% Similarity=0.331 Sum_probs=320.4
Q ss_pred CccCCCCCCHHHHHHHHHHHH-hCCCEEEEEcCCccccccCCCC-CCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLA-ERGHRISFLLPAKAITKFEPSN-LHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~g-~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
++|||++||++|++.||+.|+ .+|+.|||++++.....+.+.- ..++ +.++.+|++..++++.... ....
T Consensus 10 l~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~-i~~~~lp~p~~~glp~~~~-------~~~~ 81 (481)
T PLN02992 10 MFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTG-VDIVGLPSPDISGLVDPSA-------HVVT 81 (481)
T ss_pred EeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCC-ceEEECCCccccCCCCCCc-------cHHH
Confidence 589999999999999999998 7899999999997754442211 0112 8999999766556642111 1122
Q ss_pred HHHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCC
Q 039043 79 LLMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLR 155 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (449)
.+......+.+.+++++++. +|+|||+|+ ++|+..+|+++|||++.|+++++..++.+.+.+.......... ....
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH-TVQR 160 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc-ccCC
Confidence 33333445667788888764 689999999 9999999999999999999999987766554432211111000 0000
Q ss_pred CCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhh------cCCCeEE
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQ------FGKPVIL 229 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~------~~~~~~~ 229 (449)
....+|+ +...+..+++..+.......+..+.+....+..++.+++|||.+||+++++.++.. ..++++.
T Consensus 161 ~~~~iPg----~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~ 236 (481)
T PLN02992 161 KPLAMPG----CEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYP 236 (481)
T ss_pred CCcccCC----CCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEE
Confidence 1123443 22223334443221011122344444455677889999999999999999887542 1256999
Q ss_pred eCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-----------
Q 039043 230 SGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGH----------- 298 (449)
Q Consensus 230 vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~----------- 298 (449)
|||+.........+.++.+|||.++++++|||||||+..++.+++.+++.+|+.++.+|||++....+.
T Consensus 237 VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~ 316 (481)
T PLN02992 237 IGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANG 316 (481)
T ss_pred ecCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcc
Confidence 999975422222345689999999889999999999999999999999999999999999999642110
Q ss_pred ----CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHH
Q 039043 299 ----DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMG 374 (449)
Q Consensus 299 ----~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~ 374 (449)
++....+|+||.++.+.+++++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 317 ~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~ 396 (481)
T PLN02992 317 GETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS 396 (481)
T ss_pred cccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH
Confidence 0012358999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHh
Q 039043 375 EELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS------ERLENSYLDGFVQKLHG 446 (449)
Q Consensus 375 ~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~ 446 (449)
+.||+|+.++.. ++.++.++|.++|+++|.+ +.+++++++++++++.++. +|++.+.+++|++.+.+
T Consensus 397 ~~~g~gv~~~~~--~~~~~~~~l~~av~~vm~~---~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 397 DELGIAVRSDDP--KEVISRSKIEALVRKVMVE---EEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHhCeeEEecCC--CCcccHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 334999999752 1248999999999999987 5668999999999998762 46788899999988875
No 7
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3e-60 Score=474.38 Aligned_cols=439 Identities=26% Similarity=0.363 Sum_probs=322.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCC-----CCC-CEEEEEecCCCC-CCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNL-----HRN-LITFIPVSVPRV-DGLPPGAETTNDVP 73 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~-----~~~-~i~~~~~p~~~~-~~l~~~~~~~~~~~ 73 (449)
++|+|++||++|++.||+.|+.||++|||++++.+...+++.+. .++ .+.+..++++.. +++|.+.+......
T Consensus 10 lvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~ 89 (482)
T PLN03007 10 FFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFIT 89 (482)
T ss_pred EECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcccccccc
Confidence 58999999999999999999999999999999998876665432 111 135666665543 35665544332111
Q ss_pred -------CCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhcc
Q 039043 74 -------FPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRE 145 (449)
Q Consensus 74 -------~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 145 (449)
..+...+......+.+.+.+++++.+|||||+|. ++|+..+|+++|||++.|++++++..+...........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 169 (482)
T PLN03007 90 SNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQ 169 (482)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccc
Confidence 0122233344556778888888888999999999 99999999999999999999888766554433221110
Q ss_pred ccCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCC
Q 039043 146 RTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGK 225 (449)
Q Consensus 146 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 225 (449)
............+++|. ...++...++.. . ..................++.+++|++.+||+++.+.+......
T Consensus 170 ~~~~~~~~~~~~pg~p~-~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~ 243 (482)
T PLN03007 170 KKVASSSEPFVIPDLPG-DIVITEEQINDA----D-EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAK 243 (482)
T ss_pred cccCCCCceeeCCCCCC-ccccCHHhcCCC----C-CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCC
Confidence 00000000011223331 011111111110 1 10001123334445567788999999999999888888776656
Q ss_pred CeEEeCccCCCCCC-------c-c---chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 039043 226 PVILSGPALPESPR-------F-A---LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKP 294 (449)
Q Consensus 226 ~~~~vGp~~~~~~~-------~-~---~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 294 (449)
.+++|||+....+. . + .+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||+++.
T Consensus 244 ~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~ 323 (482)
T PLN03007 244 RAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRK 323 (482)
T ss_pred CEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 79999997542210 0 1 24568999999988999999999999999999999999999999999999986
Q ss_pred CCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHH
Q 039043 295 PVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMG 374 (449)
Q Consensus 295 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~ 374 (449)
.....+....+|++|..+..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 324 ~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~ 403 (482)
T PLN03007 324 NENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVT 403 (482)
T ss_pred CCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHH
Confidence 43211123468999999888899999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcceeEeeecC----CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHh
Q 039043 375 EELKVGVEVEKGD----EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLHG 446 (449)
Q Consensus 375 ~~~G~G~~~~~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~~ 446 (449)
+.|++|+.+.... +.+.++.++|+++|+++|.+ +++.+||+||+++++.+++ +|++.+.+++|++.+++
T Consensus 404 ~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~---~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 404 QVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVG---EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred HhhcceeEeccccccccccCcccHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 7667777663110 12248999999999999998 5567999999999999875 47799999999999987
Q ss_pred cc
Q 039043 447 LL 448 (449)
Q Consensus 447 ~~ 448 (449)
.|
T Consensus 481 ~~ 482 (482)
T PLN03007 481 RK 482 (482)
T ss_pred cC
Confidence 64
No 8
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.5e-60 Score=466.48 Aligned_cols=440 Identities=27% Similarity=0.401 Sum_probs=323.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC---C-CCCCEEEEEecCCCC-CCCCCCCCCCCCCCC-
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSN---L-HRNLITFIPVSVPRV-DGLPPGAETTNDVPF- 74 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g---~-~~~~i~~~~~p~~~~-~~l~~~~~~~~~~~~- 74 (449)
++|||++||++|++.||+.|+.+|+.|||++++.....+...- . ....|+|+.+|+|.. +++|.+.+...+.+.
T Consensus 13 ~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~ 92 (491)
T PLN02534 13 LIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPSR 92 (491)
T ss_pred EECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCcH
Confidence 5899999999999999999999999999999998765443311 0 011289999998754 578766554433332
Q ss_pred CcHHHHHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCC
Q 039043 75 PLHPLLMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDN 151 (449)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (449)
.+...+......+.+.+.+++++. +|+|||+|. ++|+..+|+++|||++.|++++++....+.+.............
T Consensus 93 ~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 172 (491)
T PLN02534 93 DLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSD 172 (491)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCCCC
Confidence 233344455556777888888763 579999999 99999999999999999999988876654332211111111111
Q ss_pred CCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHH-HHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEe
Q 039043 152 DLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSF-AKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILS 230 (449)
Q Consensus 152 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~v 230 (449)
+.....+++|. ...++. .+++.... . ...... ...+......++.+++|||.+||+++++.+...++++++.|
T Consensus 173 ~~~~~iPg~p~-~~~l~~---~dlp~~~~-~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 173 SEPFVVPGMPQ-SIEITR---AQLPGAFV-S-LPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred CceeecCCCCc-cccccH---HHCChhhc-C-cccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 11111222221 011222 22332221 0 112222 22232233457789999999999999999877676789999
Q ss_pred CccCCCCC-------Cc---c-chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Q 039043 231 GPALPESP-------RF---A-LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHD 299 (449)
Q Consensus 231 Gp~~~~~~-------~~---~-~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 299 (449)
||+..... .. . ...++.+|||.++++++|||||||.....++++.+++.+|+.++.+|||+++......
T Consensus 247 GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~ 326 (491)
T PLN02534 247 GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHS 326 (491)
T ss_pred CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCcccc
Confidence 99964211 00 1 1245889999999899999999999999999999999999999999999998532111
Q ss_pred cccc-CCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhc
Q 039043 300 TIES-ALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELK 378 (449)
Q Consensus 300 ~~~~-~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 378 (449)
+... .+|++|..+..++++++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||
T Consensus 327 ~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~ 406 (491)
T PLN02534 327 ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLR 406 (491)
T ss_pred chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhc
Confidence 0112 468899888778899999999999999999999999999999999999999999999999999999999998899
Q ss_pred ceeEeeec-------CC--CCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHH
Q 039043 379 VGVEVEKG-------DE--DGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLH 445 (449)
Q Consensus 379 ~G~~~~~~-------~~--~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~ 445 (449)
+|+++... ++ ++.++.++|+++|+++|.++ ++.|+++|+||++|++.+++ +|++.+.+++|++.+.
T Consensus 407 vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~-~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 407 IGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDG-GEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred ceEEecccccccccccccccCccCHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99988521 11 12589999999999999721 25678999999999998874 4889999999999987
Q ss_pred hc
Q 039043 446 GL 447 (449)
Q Consensus 446 ~~ 447 (449)
+.
T Consensus 486 ~~ 487 (491)
T PLN02534 486 KQ 487 (491)
T ss_pred HH
Confidence 53
No 9
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.5e-60 Score=461.80 Aligned_cols=409 Identities=23% Similarity=0.394 Sum_probs=313.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCC-CCCCCCCCCcHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGA-ETTNDVPFPLHPL 79 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~-~~~~~~~~~~~~~ 79 (449)
+||+|++||++|++.||+.|+.+|+.|||++++.....+.... .++ |+|+.+| +++|.+. +.. .....+
T Consensus 10 ~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~-~~~-i~~~~ip----dglp~~~~~~~----~~~~~~ 79 (449)
T PLN02173 10 AVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDP-SSP-ISIATIS----DGYDQGGFSSA----GSVPEY 79 (449)
T ss_pred EecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCC-CCC-EEEEEcC----CCCCCcccccc----cCHHHH
Confidence 5899999999999999999999999999999997655543211 123 9999998 6777632 221 122234
Q ss_pred HHHHHhhcHHHHHHHHhhc----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCC
Q 039043 80 LMTAMDLTEPAIESVLRHL----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDL 153 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (449)
+......+.+.+.+++++. +| +|||+|. .+|+..+|+++|||++.|++++++....+++.. .. ..+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~-~~------~~~~ 152 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSY-IN------NGSL 152 (449)
T ss_pred HHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHH-hc------cCCc
Confidence 4444445666777777653 56 9999999 999999999999999999998877665544321 10 0111
Q ss_pred CCCCCCCCCCccccCchhhchhhhhhhccCC--CchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeC
Q 039043 154 LRPPQGFPTSKIRLRAHEARGLAAATVKEFG--GGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSG 231 (449)
Q Consensus 154 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG 231 (449)
..+.+++|. .+..+++..+..... ..+..+.+......+++.+++|||.+||+++.+.++.. ++++.||
T Consensus 153 ~~~~pg~p~-------l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VG 223 (449)
T PLN02173 153 TLPIKDLPL-------LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIG 223 (449)
T ss_pred cCCCCCCCC-------CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEc
Confidence 112233332 233344433220001 11232333345567889999999999999998888653 3699999
Q ss_pred ccCCCC--------CCc--------cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 039043 232 PALPES--------PRF--------ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPP 295 (449)
Q Consensus 232 p~~~~~--------~~~--------~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 295 (449)
|+.+.. ... ...+++.+||+.++++++|||||||+...+.+++.+++.+| ++.+|+|++...
T Consensus 224 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~ 301 (449)
T PLN02173 224 PTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS 301 (449)
T ss_pred ccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc
Confidence 996421 000 11234889999999999999999999999999999999999 788999999753
Q ss_pred CCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHh
Q 039043 296 VGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGE 375 (449)
Q Consensus 296 ~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 375 (449)
....+|.++..+...+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 302 -----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~ 376 (449)
T PLN02173 302 -----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376 (449)
T ss_pred -----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHH
Confidence 234588899888767889988999999999999999999999999999999999999999999999999999999
Q ss_pred hhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH----hcCcchHHHHHHHHHHH
Q 039043 376 ELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR----SERLENSYLDGFVQKLH 445 (449)
Q Consensus 376 ~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~~~~~~ 445 (449)
.||+|+.+...+.++.++.++|+++|+++|.+ ++++++|+||+++++..+ ++|++.+.+++|++++.
T Consensus 377 ~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~---~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 377 VWKVGVRVKAEKESGIAKREEIEFSIKEVMEG---EKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HhCceEEEeecccCCcccHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 88999999765423457999999999999987 667899999999999988 56888899999999875
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1e-59 Score=463.43 Aligned_cols=421 Identities=21% Similarity=0.339 Sum_probs=309.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
+||||++||++|++.||+.|+.+|+.|||++++........ . .++ ++|..+| +++|.+.... . ....++
T Consensus 12 lvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~-~-~~~-i~~~~ip----~glp~~~~~~--~--~~~~~~ 80 (451)
T PLN02410 12 LVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD-D-FTD-FQFVTIP----ESLPESDFKN--L--GPIEFL 80 (451)
T ss_pred EECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc-C-CCC-eEEEeCC----CCCCcccccc--c--CHHHHH
Confidence 58999999999999999999999999999999976421111 0 122 8999998 6776532111 1 122333
Q ss_pred HHHHhhcHHHHHHHHhhc------CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccc---cCCC
Q 039043 81 MTAMDLTEPAIESVLRHL------KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRER---TLTD 150 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~------~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (449)
......+.+.+.+++++. +++|||+|. ..|+..+|+++|||++.+++++++.+..+.+++...... +...
T Consensus 81 ~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T PLN02410 81 HKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKE 160 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccc
Confidence 333334455566665542 469999999 999999999999999999999998877666543322110 1110
Q ss_pred CCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEe
Q 039043 151 NDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILS 230 (449)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~v 230 (449)
..-. ....+|+ +...+..+++.............+... ..+..++++++|||.+||+++++++....++++++|
T Consensus 161 ~~~~-~~~~iPg----~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~v 234 (451)
T PLN02410 161 PKGQ-QNELVPE----FHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPI 234 (451)
T ss_pred cccC-ccccCCC----CCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEe
Confidence 0000 0112333 111111222221110000111111111 235678899999999999999999877666789999
Q ss_pred CccCCCCC-Cccc---hhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC-CCccccCC
Q 039043 231 GPALPESP-RFAL---EERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVG-HDTIESAL 305 (449)
Q Consensus 231 Gp~~~~~~-~~~~---~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~-~~~~~~~l 305 (449)
||+....+ ..++ ..++.+|||.++++++|||||||+...+.+++.+++.+|+.++.+|+|+++.+.. ..+....+
T Consensus 235 Gpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~l 314 (451)
T PLN02410 235 GPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESL 314 (451)
T ss_pred cccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcC
Confidence 99975321 1112 2346789999988999999999999999999999999999999999999985321 11012348
Q ss_pred ChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeee
Q 039043 306 PEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 385 (449)
|++|+++..++. .+.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.+..
T Consensus 315 p~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~ 393 (451)
T PLN02410 315 PKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEG 393 (451)
T ss_pred ChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCC
Confidence 999998876555 5558999999999999999999999999999999999999999999999999999988899999973
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH----hcCcchHHHHHHHHHHHhc
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR----SERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~----~~~~~~~~~~~~~~~~~~~ 447 (449)
. ++.++|+++|+++|.+ +.+++|++++++|++.++ .+|++.+.+++|++.++.+
T Consensus 394 -~----~~~~~v~~av~~lm~~---~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 394 -D----LDRGAVERAVKRLMVE---EEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred -c----ccHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 3 8999999999999987 446799999999999988 4578899999999998753
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.8e-59 Score=462.11 Aligned_cols=419 Identities=21% Similarity=0.313 Sum_probs=309.2
Q ss_pred CccCCCCCCHHHHHHHHHH--HHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 1 IYPWFAMGHLTPFLHIANK--LAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~--L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+||+|++||++|++.||+. |++||++|||++++.+.+.++..+.....+++..+| ++++.+.+ .....
T Consensus 13 ~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~----~glp~~~~------~~~~~ 82 (456)
T PLN02210 13 MVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS----DGLPKDDP------RAPET 82 (456)
T ss_pred EeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC----CCCCCCcc------cCHHH
Confidence 5899999999999999999 569999999999999877765543222227777666 57765432 11223
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCC
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPP 157 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (449)
++....+.+.+.+.+++++.+|||||+|. ..|+..+|+++|||.+.++++++..+..+.+.+......+.. .+.. ..
T Consensus 83 ~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~-~~~~-~~ 160 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDL-EDLN-QT 160 (456)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcc-cccC-Ce
Confidence 33344445567788888888899999999 999999999999999999998888776655432211111100 0100 01
Q ss_pred CCCCCCccccCchhhchhhhhhhccCCCch-HHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCC
Q 039043 158 QGFPTSKIRLRAHEARGLAAATVKEFGGGL-SFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPE 236 (449)
Q Consensus 158 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~ 236 (449)
..+|+ +...+..+++..+.......+ ....++......++++++||+.++|+++++.++.. +++++|||+...
T Consensus 161 ~~~Pg----l~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--~~v~~VGPl~~~ 234 (456)
T PLN02210 161 VELPA----LPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL--KPVIPIGPLVSP 234 (456)
T ss_pred eeCCC----CCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc--CCEEEEcccCch
Confidence 12333 222233344432220111112 22334444556788999999999999998887662 479999999742
Q ss_pred -----CCCc----------cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcc
Q 039043 237 -----SPRF----------ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTI 301 (449)
Q Consensus 237 -----~~~~----------~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 301 (449)
.... ..+.++.+|++.++++++|||||||....+.+++.+++.+|+.++.+|||+++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~----- 309 (456)
T PLN02210 235 FLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE----- 309 (456)
T ss_pred hhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc-----
Confidence 1100 12345789999998899999999999999999999999999999999999997531
Q ss_pred ccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 302 ESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 302 ~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
....+.++..+...++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+
T Consensus 310 ~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~ 389 (456)
T PLN02210 310 KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGV 389 (456)
T ss_pred cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEE
Confidence 11223445555422344567999999999999999999999999999999999999999999999999999998459999
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHH
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLH 445 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~ 445 (449)
.+...+.++.++.++|+++|+++|.+ +.|+++|+||++|++..+. +|++.+.+++|++.+.
T Consensus 390 ~l~~~~~~~~~~~~~l~~av~~~m~~---~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 390 RMRNDAVDGELKVEEVERCIEAVTEG---PAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred EEeccccCCcCCHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99753223458999999999999987 5677899999999998874 4778889999999875
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.6e-59 Score=455.27 Aligned_cols=429 Identities=22% Similarity=0.351 Sum_probs=316.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhC-CCEEEEEcCCcccccc------CCCCCCCCCEEEEEecCCCCCCCC-CCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAER-GHRISFLLPAKAITKF------EPSNLHRNLITFIPVSVPRVDGLP-PGAETTNDV 72 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~------~~~g~~~~~i~~~~~p~~~~~~l~-~~~~~~~~~ 72 (449)
++|+|++||++|++.||+.|+.+ |..|||+++......+ ......++ ++++.+|++..++++ .+
T Consensus 8 l~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~~~~~l~~~~------- 79 (470)
T PLN03015 8 LVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTT-CQITEIPSVDVDNLVEPD------- 79 (470)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCc-eEEEECCCCccccCCCCC-------
Confidence 58999999999999999999977 9999999877644322 11100112 999999965443442 11
Q ss_pred CCCcHHHHHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCc-eEEEecchHHHHHhhcchhhhhccccC
Q 039043 73 PFPLHPLLMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIK-SVLYCIISPATIGYLLSPERKLRERTL 148 (449)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (449)
......+......+.+.+++++++. +|+|||+|. .+|+..+|+++||| .+.++++.++....+++.+........
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~ 158 (470)
T PLN03015 80 -ATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEG 158 (470)
T ss_pred -ccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccc
Confidence 1223334445556777888888876 689999999 99999999999999 588888887776665554432211110
Q ss_pred CCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc-----
Q 039043 149 TDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF----- 223 (449)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~----- 223 (449)
...+... ...+|+ +...+..+++..+.......+..+.+.......++++++|||.+||+.+++.++..+
T Consensus 159 ~~~~~~~-~~~vPg----~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~ 233 (470)
T PLN03015 159 EYVDIKE-PLKIPG----CKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRV 233 (470)
T ss_pred ccCCCCC-eeeCCC----CCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccc
Confidence 0001111 112343 222233334332210111112222233345778999999999999999998887642
Q ss_pred -CCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC-----
Q 039043 224 -GKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVG----- 297 (449)
Q Consensus 224 -~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~----- 297 (449)
+++++.|||+.......+.+.++.+|||.++++++|||||||+..++.+++.+++.+|+.++.+|||+++....
T Consensus 234 ~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~ 313 (470)
T PLN03015 234 MKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGAS 313 (470)
T ss_pred cCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccc
Confidence 24699999997432111223479999999988999999999999999999999999999999999999974211
Q ss_pred ---CCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHH
Q 039043 298 ---HDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMG 374 (449)
Q Consensus 298 ---~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~ 374 (449)
.++....+|++|..+.++.++++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 314 ~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~ 393 (470)
T PLN03015 314 SSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT 393 (470)
T ss_pred cccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHH
Confidence 00023368999999988889999999999999999999999999999999999999999999999999999999997
Q ss_pred hhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHH
Q 039043 375 EELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSE----RLENSYLDGFVQKL 444 (449)
Q Consensus 375 ~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~~~~~~~~~ 444 (449)
+.||+|+++...++++.++.++|+++|+++|... +++|+++|+||++|+++.+.. |++.+.+++|++.+
T Consensus 394 ~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~-~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 394 EEIGVAVRTSELPSEKVIGREEVASLVRKIVAEE-DEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHhCeeEEecccccCCccCHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 6779999996322233689999999999999620 256789999999999998753 78888999999876
No 13
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1e-58 Score=457.94 Aligned_cols=425 Identities=24% Similarity=0.344 Sum_probs=310.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC-------C--CCCCEEEEEecCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSN-------L--HRNLITFIPVSVPRVDGLPPGAETTND 71 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g-------~--~~~~i~~~~~p~~~~~~l~~~~~~~~~ 71 (449)
++|||++||++|++.||+.|+.+|..|||++++.....+.+.. . ....++|..+| +++|.+.+..
T Consensus 12 ~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----dglp~~~~~~-- 85 (480)
T PLN02555 12 LVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----DGWAEDDPRR-- 85 (480)
T ss_pred EECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----CCCCCCcccc--
Confidence 5899999999999999999999999999999997665543210 0 01125555555 5776543321
Q ss_pred CCCCcHHHHHHHHhhcHHHHHHHHhhc----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhcc
Q 039043 72 VPFPLHPLLMTAMDLTEPAIESVLRHL----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRE 145 (449)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 145 (449)
.+...++......+.+.+.+++++. +| +|||+|. .+|+..+|+++|||++.|++++++.++.+.+.+.....
T Consensus 86 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~ 163 (480)
T PLN02555 86 --QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVP 163 (480)
T ss_pred --cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCC
Confidence 1222233333334455666666642 44 9999999 99999999999999999999999887776655321000
Q ss_pred ccCCC-CCCCCCCCCCCCCccccCchhhchhhhhhhc--cCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhh
Q 039043 146 RTLTD-NDLLRPPQGFPTSKIRLRAHEARGLAAATVK--EFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQ 222 (449)
Q Consensus 146 ~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 222 (449)
..... .+. ...+|+ +...+..+++.++.. .....+..+.+.......++++++|||.+||+++++.+...
T Consensus 164 ~~~~~~~~~---~~~iPg----lp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 164 FPTETEPEI---DVQLPC----MPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred cccccCCCc---eeecCC----CCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 11000 011 112333 111222333322210 11111233333344567788999999999999999888664
Q ss_pred cCCCeEEeCccCCCCC---C------ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 039043 223 FGKPVILSGPALPESP---R------FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALK 293 (449)
Q Consensus 223 ~~~~~~~vGp~~~~~~---~------~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 293 (449)
+ + ++.|||+..... . ...+.++.+||+.++++++|||||||+...+.+++.+++.+++.++.+|||+++
T Consensus 237 ~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 237 C-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred C-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3 3 999999964321 1 112456899999998889999999999999999999999999999999999997
Q ss_pred CCCCC-CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHH
Q 039043 294 PPVGH-DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARL 372 (449)
Q Consensus 294 ~~~~~-~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 372 (449)
..... ......+|+++..+.+ +|+.+.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 393 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVY 393 (480)
T ss_pred cCcccccchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHH
Confidence 43110 0012468888887654 456777999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcceeEeeecC-CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHh
Q 039043 373 MGEELKVGVEVEKGD-EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLHG 446 (449)
Q Consensus 373 v~~~~G~G~~~~~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~~ 446 (449)
+++.||+|+++...+ +.+.++.++|.++|+++|.+ +++.++|+||++|+++.++ +|++.+.+++|++.+.+
T Consensus 394 ~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~---~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 394 LVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG---EKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999889999995311 12248999999999999987 6678999999999999764 48889999999999875
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.1e-58 Score=455.45 Aligned_cols=412 Identities=23% Similarity=0.334 Sum_probs=306.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC-CCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSN-LHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g-~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
++|||++||++|++.||+.|+.+|+.|||++++.+...+.+.. ..++ ++|+.+| ++++.+ .......+
T Consensus 11 lvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~-i~~v~lp----~g~~~~------~~~~~~~l 79 (448)
T PLN02562 11 LVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLG-ITFMSIS----DGQDDD------PPRDFFSI 79 (448)
T ss_pred EEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCC-EEEEECC----CCCCCC------ccccHHHH
Confidence 5899999999999999999999999999999998776554431 0122 9999988 444321 11122222
Q ss_pred HHHHHhhcHHHHHHHHhhcC----CCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccc--cCCC-C
Q 039043 80 LMTAMDLTEPAIESVLRHLK----PDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRER--TLTD-N 151 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~----pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~ 151 (449)
.......+.+.+.+++++.. ++|||+|. .+|+..+|+++|||++.|+++++..++.+.+.+...... .... .
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 159 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP 159 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc
Confidence 22222246677788877652 37999999 999999999999999999999888777665543321111 1000 0
Q ss_pred CCCCCCCCCCCCccccCchhhchhhhhhhcc--CCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh----hcCC
Q 039043 152 DLLRPPQGFPTSKIRLRAHEARGLAAATVKE--FGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS----QFGK 225 (449)
Q Consensus 152 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~----~~~~ 225 (449)
....+...+|+ +...+..+++...... ....+..+.+.......++.+++|||.+||+.+++.... ...+
T Consensus 160 ~~~~~~~~~Pg----~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 160 RQLEKICVLPE----QPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccCCC----CCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 00011112333 1112223333322101 111234444555567778899999999999987776543 1346
Q ss_pred CeEEeCccCCCCCC----c---cchhcccccccCCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 039043 226 PVILSGPALPESPR----F---ALEERWETLLGSFKSKSLIFCAFGSEC-VLNKEQFQELVLGFELSGLPFLVALKPPVG 297 (449)
Q Consensus 226 ~~~~vGp~~~~~~~----~---~~~~~l~~~l~~~~~k~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 297 (449)
+++.|||+...... . +.+.++.+||+.++++++|||||||+. ..+.+++.+++.+|+.++.+|||++...
T Consensus 236 ~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~-- 313 (448)
T PLN02562 236 QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV-- 313 (448)
T ss_pred CEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC--
Confidence 89999999754321 1 112346699999988899999999986 5789999999999999999999999753
Q ss_pred CCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhh
Q 039043 298 HDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEEL 377 (449)
Q Consensus 298 ~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 377 (449)
..+.+|+++..+.. +|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++++.|
T Consensus 314 ---~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 389 (448)
T PLN02562 314 ---WREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW 389 (448)
T ss_pred ---chhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh
Confidence 23358888887764 46677799999999999999999999999999999999999999999999999999998766
Q ss_pred cceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHH
Q 039043 378 KVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSE---RLENSYLDGFVQKLH 445 (449)
Q Consensus 378 G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~---~~~~~~~~~~~~~~~ 445 (449)
|+|+.+. + ++.++|.++|+++|++ ++|++||+++++++... |++.+.+++|+++++
T Consensus 390 g~g~~~~--~----~~~~~l~~~v~~~l~~------~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 390 KIGVRIS--G----FGQKEVEEGLRKVMED------SGMGERLMKLRERAMGEEARLRSMMNFTTLKDELK 448 (448)
T ss_pred CceeEeC--C----CCHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 9998884 3 7999999999999998 99999999999998764 688899999999874
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.8e-58 Score=455.24 Aligned_cols=420 Identities=22% Similarity=0.309 Sum_probs=311.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
++|+|++||++|++.||++|+.| ||+|||++++.+...+++....++ ++|+.+| ++++...... .+...
T Consensus 15 lvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~g-i~fv~lp----~~~p~~~~~~----~~~~~ 85 (459)
T PLN02448 15 AMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDN-IRFATIP----NVIPSELVRA----ADFPG 85 (459)
T ss_pred EECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCC-EEEEECC----CCCCCccccc----cCHHH
Confidence 58999999999999999999999 999999999998877776421112 9999998 4444332211 12333
Q ss_pred HHHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccc--cCCCC-C
Q 039043 79 LLMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRER--TLTDN-D 152 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~ 152 (449)
.+......+.+.+.+++++. ++||||+|. +.|+..+|+++|||+|.++++++..++.+.+.+...... +.... .
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSES 165 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccc
Confidence 44433445666777777764 579999999 999999999999999999999987776655543321111 10000 0
Q ss_pred CCCCCCCCCCCccccCchhhchhhhhhhccCCCc-hHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeC
Q 039043 153 LLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGG-LSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSG 231 (449)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG 231 (449)
...+...+|+ +......+++.++. ..... +..+.........++.+++||+.+||+.+.+.+...++.+++.||
T Consensus 166 ~~~~~~~iPg----~~~l~~~dlp~~~~-~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iG 240 (459)
T PLN02448 166 GEERVDYIPG----LSSTRLSDLPPIFH-GNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIG 240 (459)
T ss_pred cCCccccCCC----CCCCChHHCchhhc-CCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEec
Confidence 0111123443 11222233333322 11111 233344444556678999999999999989988776666899999
Q ss_pred ccCCCCCC--------c-cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccc
Q 039043 232 PALPESPR--------F-ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIE 302 (449)
Q Consensus 232 p~~~~~~~--------~-~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 302 (449)
|+...... . ..+.++.+|++.++++++|||||||+...+.+++.+++.+|+.++.+|||++....
T Consensus 241 P~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~------ 314 (459)
T PLN02448 241 PSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA------ 314 (459)
T ss_pred CcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch------
Confidence 99753110 0 01236889999998899999999999989999999999999999999999875321
Q ss_pred cCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeE
Q 039043 303 SALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVE 382 (449)
Q Consensus 303 ~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 382 (449)
.++..+. ..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.
T Consensus 315 ----~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~ 389 (459)
T PLN02448 315 ----SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWR 389 (459)
T ss_pred ----hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEE
Confidence 1232222 23677779999999999999999999999999999999999999999999999999999987799999
Q ss_pred eeecC-CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHh
Q 039043 383 VEKGD-EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLHG 446 (449)
Q Consensus 383 ~~~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~~ 446 (449)
+.... +++.+++++|+++|+++|.+. ++.+++||+||++|++++++ +|++.+.+++|++.++.
T Consensus 390 ~~~~~~~~~~~~~~~l~~av~~vl~~~-~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 390 VKREVGEETLVGREEIAELVKRFMDLE-SEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EecccccCCcCcHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 86421 123579999999999999861 24578999999999999874 48899999999999875
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.8e-57 Score=451.96 Aligned_cols=431 Identities=22% Similarity=0.332 Sum_probs=315.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCC----CEEEEEcCCcccc----ccCCC-----CCCCCCEEEEEecCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERG----HRISFLLPAKAIT----KFEPS-----NLHRNLITFIPVSVPRVDGLPPGAE 67 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rG----h~Vt~~~~~~~~~----~~~~~-----g~~~~~i~~~~~p~~~~~~l~~~~~ 67 (449)
++|||++||++|++.||+.|+.+| +.|||++++.... .++.. ....+ |+|+.+|.+. ++.+.+
T Consensus 8 lvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~~---~p~~~e 83 (480)
T PLN00164 8 LLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLD-IRFHHLPAVE---PPTDAA 83 (480)
T ss_pred EeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCC-EEEEECCCCC---CCCccc
Confidence 589999999999999999999986 7999999876422 11110 00112 8999998321 222211
Q ss_pred CCCCCCCCcHHHHHHHHhhcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhc
Q 039043 68 TTNDVPFPLHPLLMTAMDLTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLR 144 (449)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 144 (449)
....++......+.+.+.+++++. .++|||+|. .+|+..+|+++|||++.|+++++..++.+.+.+....
T Consensus 84 -------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~ 156 (480)
T PLN00164 84 -------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDE 156 (480)
T ss_pred -------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcc
Confidence 122334444555667788888765 459999999 9999999999999999999999998887776643211
Q ss_pred cccCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc-
Q 039043 145 ERTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF- 223 (449)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~- 223 (449)
.......+... ...+|+ +...+..+++..........+..+........+++.+++|||.+||+++++.++...
T Consensus 157 ~~~~~~~~~~~-~~~iPG----lp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 157 EVAVEFEEMEG-AVDVPG----LPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred cccCcccccCc-ceecCC----CCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 11100011110 112333 111222333322210111112233333345677889999999999999998886642
Q ss_pred -----CCCeEEeCccCCCC--C-CccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 039043 224 -----GKPVILSGPALPES--P-RFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPP 295 (449)
Q Consensus 224 -----~~~~~~vGp~~~~~--~-~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 295 (449)
.++++.|||+.... + ....+.++.+|||.++++++|||||||+...+.+++.+++.+|+.++.+|||+++..
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~ 311 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGP 311 (480)
T ss_pred cccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 14799999997421 1 112345799999999989999999999999999999999999999999999999854
Q ss_pred CCC-------CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhh
Q 039043 296 VGH-------DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQII 368 (449)
Q Consensus 296 ~~~-------~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~ 368 (449)
... .+....+|+++..+.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 312 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 391 (480)
T PLN00164 312 PAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHL 391 (480)
T ss_pred cccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchh
Confidence 210 0012348899999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeEeeecC-CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHH
Q 039043 369 NARLMGEELKVGVEVEKGD-EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQK 443 (449)
Q Consensus 369 na~~v~~~~G~G~~~~~~~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~ 443 (449)
||+++++.||+|+.+...+ +++.++.++|.++|+++|.+. ++.+..+|++|++|++.+++ +|++.+.+++|+++
T Consensus 392 Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~ 470 (480)
T PLN00164 392 NAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGG-EEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLARE 470 (480)
T ss_pred HHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9998866559999986431 123479999999999999861 12468899999999998875 47788899999999
Q ss_pred HHhcc
Q 039043 444 LHGLL 448 (449)
Q Consensus 444 ~~~~~ 448 (449)
+.+.+
T Consensus 471 ~~~~~ 475 (480)
T PLN00164 471 IRHGA 475 (480)
T ss_pred HHhcc
Confidence 98643
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-57 Score=446.69 Aligned_cols=410 Identities=21% Similarity=0.333 Sum_probs=296.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCC--CEEEE--EcCCcccccc----CCCC-CCCCCEEEEEecCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERG--HRISF--LLPAKAITKF----EPSN-LHRNLITFIPVSVPRVDGLPPGAETTND 71 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rG--h~Vt~--~~~~~~~~~~----~~~g-~~~~~i~~~~~p~~~~~~l~~~~~~~~~ 71 (449)
+||+|++||++|++.||+.|+.+| +.||+ .+++.+...+ +... ..++ ++|+.+|+ +.+........
T Consensus 8 l~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~----~~~~~~~~~~~ 82 (451)
T PLN03004 8 LYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPS-ITFHHLPA----VTPYSSSSTSR 82 (451)
T ss_pred EeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCC-eEEEEcCC----CCCCCCccccc
Confidence 589999999999999999999998 45555 5554422211 1110 1123 99999983 33211111111
Q ss_pred CCCCcHHHHHHHHhhcHHHHHHHHhhc---C-CCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccc
Q 039043 72 VPFPLHPLLMTAMDLTEPAIESVLRHL---K-PDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRER 146 (449)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~ll~~~---~-pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 146 (449)
......+..........+.+++++. + ++|||+|. .+|+..+|+++|||++.|++++++.++.+.+.+......
T Consensus 83 --~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 83 --HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred --cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 1122233333344555666666654 3 49999999 999999999999999999999999888777654321111
Q ss_pred cCC-CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC-
Q 039043 147 TLT-DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG- 224 (449)
Q Consensus 147 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~- 224 (449)
+.. ..+. ....+|+ +...+..+++..........+..+.+....+..++.+++|||.+||+++++.+...+.
T Consensus 161 ~~~~~~~~--~~v~iPg----~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~ 234 (451)
T PLN03004 161 PGKNLKDI--PTVHIPG----VPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCF 234 (451)
T ss_pred cccccccC--CeecCCC----CCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCC
Confidence 000 0010 1112333 2222333444332201111123444455566778899999999999999998876543
Q ss_pred CCeEEeCccCCCCC--Ccc--chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC-
Q 039043 225 KPVILSGPALPESP--RFA--LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHD- 299 (449)
Q Consensus 225 ~~~~~vGp~~~~~~--~~~--~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~- 299 (449)
++++.|||+..... ... .+.++.+|||.++++++|||||||+..++.+++.+++.+|+.++.+|||+++.....+
T Consensus 235 ~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~ 314 (451)
T PLN03004 235 RNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEK 314 (451)
T ss_pred CCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 57999999974321 111 1245889999998899999999999999999999999999999999999998532100
Q ss_pred ---ccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhh
Q 039043 300 ---TIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEE 376 (449)
Q Consensus 300 ---~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 376 (449)
+....+|++|+.+.+..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.
T Consensus 315 ~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~ 394 (451)
T PLN03004 315 TELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDE 394 (451)
T ss_pred cccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHH
Confidence 01224899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc
Q 039043 377 LKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 377 ~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
||+|+.++..+ ++.++.++|+++|+++|++ ++|+++++++++..+..
T Consensus 395 ~g~g~~l~~~~-~~~~~~e~l~~av~~vm~~------~~~r~~a~~~~~~a~~A 441 (451)
T PLN03004 395 IKIAISMNESE-TGFVSSTEVEKRVQEIIGE------CPVRERTMAMKNAAELA 441 (451)
T ss_pred hCceEEecCCc-CCccCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHH
Confidence 69999997531 2347999999999999998 89999999999988743
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-57 Score=445.32 Aligned_cols=427 Identities=21% Similarity=0.295 Sum_probs=307.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCC--CEEEEEcCCcccc-c----cCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERG--HRISFLLPAKAIT-K----FEPS-NLHRNLITFIPVSVPRVDGLPPGAETTNDV 72 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~-~----~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~ 72 (449)
++|+|++||++|++.||+.|+.+| ..|||++++.... . +... ...+. ++|+.+|... ..+.. ..
T Consensus 8 ~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~~--~~~~~-~~---- 79 (468)
T PLN02207 8 FIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPF-VRFIDVPELE--EKPTL-GG---- 79 (468)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCC-eEEEEeCCCC--CCCcc-cc----
Confidence 589999999999999999999998 9999999987541 1 2211 11123 9999998211 11110 11
Q ss_pred CCCcHHHHHHHHhhc----HHHHHHHHhhc----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhh
Q 039043 73 PFPLHPLLMTAMDLT----EPAIESVLRHL----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERK 142 (449)
Q Consensus 73 ~~~~~~~~~~~~~~~----~~~~~~ll~~~----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 142 (449)
..+....+......+ .+.+.+++++. +| +|||+|. .+|+..+|+++|||++.|+++++..++.+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 112222333333233 44566666543 34 8999999 99999999999999999999999877766654322
Q ss_pred hccc-cCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh
Q 039043 143 LRER-TLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS 221 (449)
Q Consensus 143 ~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 221 (449)
.... .....+.. ....+|+.. ......+++..+. . ...+..+.+....+.+++++++||+.+||+++++.+..
T Consensus 160 ~~~~~~~~~~~~~-~~~~vPgl~---~~l~~~dlp~~~~-~-~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 160 HSKDTSVFVRNSE-EMLSIPGFV---NPVPANVLPSALF-V-EDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred cccccccCcCCCC-CeEECCCCC---CCCChHHCcchhc-C-CccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 1110 00000000 111233311 1123334443322 1 11233334444567789999999999999998887754
Q ss_pred -hcCCCeEEeCccCCCCCC--c----cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 039043 222 -QFGKPVILSGPALPESPR--F----ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKP 294 (449)
Q Consensus 222 -~~~~~~~~vGp~~~~~~~--~----~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 294 (449)
...++++.|||+...... . ..+.++.+|||.++++++|||||||....+.+++.+++.+|+.++.+|||+++.
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 234689999999753211 1 112569999999988899999999999999999999999999999999999985
Q ss_pred CCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHH
Q 039043 295 PVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMG 374 (449)
Q Consensus 295 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~ 374 (449)
.... ..+.+|++|+.+...+ ..+.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 314 ~~~~--~~~~lp~~f~er~~~~-g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~ 390 (468)
T PLN02207 314 EEVT--NDDLLPEGFLDRVSGR-GMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMV 390 (468)
T ss_pred CCcc--ccccCCHHHHhhcCCC-eEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHH
Confidence 3211 1346899998876654 466699999999999999999999999999999999999999999999999999988
Q ss_pred hhhcceeEeeec---CCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHhc
Q 039043 375 EELKVGVEVEKG---DEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 375 ~~~G~G~~~~~~---~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 447 (449)
+.||+|+.+... +.++.++.++|.++|+++|.+ + +++||+||+++++.+++ +|++.+.+++|++++...
T Consensus 391 ~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~---~-~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 391 KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK---D-NNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred HHhCceEEEecccccccCCcccHHHHHHHHHHHHhc---c-hHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 856999987421 011246999999999999972 1 28999999999999884 477888999999999865
Q ss_pred c
Q 039043 448 L 448 (449)
Q Consensus 448 ~ 448 (449)
|
T Consensus 467 ~ 467 (468)
T PLN02207 467 K 467 (468)
T ss_pred c
Confidence 4
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.2e-57 Score=448.70 Aligned_cols=423 Identities=21% Similarity=0.286 Sum_probs=305.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCC--CEEEEEcCCccccc-------cCCCCC--CCCCEEEEEecCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERG--HRISFLLPAKAITK-------FEPSNL--HRNLITFIPVSVPRVDGLPPGAETT 69 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~-------~~~~g~--~~~~i~~~~~p~~~~~~l~~~~~~~ 69 (449)
++|+|++||++|++.||+.|+.+| ..|||++++..... +..... .++ |+|+.+|++ .+.. .
T Consensus 7 l~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~----~~~~-~-- 78 (481)
T PLN02554 7 FIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDR-LRYEVISAG----DQPT-T-- 78 (481)
T ss_pred EeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCC-eEEEEcCCC----CCCc-c--
Confidence 589999999999999999999998 88999998876432 111100 123 999999833 2211 0
Q ss_pred CCCCCCcHHHHHHHHhhcHHHHHHHHhhc-----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhh
Q 039043 70 NDVPFPLHPLLMTAMDLTEPAIESVLRHL-----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERK 142 (449)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 142 (449)
.. ..+...+......+.+.+.+++++. +| +|||+|. ++|+..+|+++|||++.|+++++..++.+.+.+..
T Consensus 79 -~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 79 -ED-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred -cc-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 01 1222333333334445555555431 34 7999999 99999999999999999999999988887776543
Q ss_pred hcc--ccCCC-CCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHh
Q 039043 143 LRE--RTLTD-NDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYI 219 (449)
Q Consensus 143 ~~~--~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 219 (449)
... .+... .+.. ....+|+....++. .+++.... . ...+..+.+....+..++++++|++.+|++.+...+
T Consensus 157 ~~~~~~~~~~~~~~~-~~v~iPgl~~pl~~---~dlp~~~~-~-~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 157 YDEKKYDVSELEDSE-VELDVPSLTRPYPV---KCLPSVLL-S-KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred ccccccCccccCCCC-ceeECCCCCCCCCH---HHCCCccc-C-HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 211 11000 0000 01123331111222 23322111 0 111233344445677889999999999999888877
Q ss_pred hhh--cCCCeEEeCccCC-CCC-C---ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEE
Q 039043 220 GSQ--FGKPVILSGPALP-ESP-R---FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVAL 292 (449)
Q Consensus 220 ~~~--~~~~~~~vGp~~~-~~~-~---~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 292 (449)
... ..++++.|||+.. ..+ . .+.+.++.+|++.++++++|||||||+...+.+++.+++.+|+.++.+|||++
T Consensus 231 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~ 310 (481)
T PLN02554 231 SGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSL 310 (481)
T ss_pred HhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 652 3357999999943 221 1 23456799999999888999999999998999999999999999999999999
Q ss_pred cCCCCC---------CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc
Q 039043 293 KPPVGH---------DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV 363 (449)
Q Consensus 293 ~~~~~~---------~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~ 363 (449)
+..... .+....+|++|..+..++ +++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 311 RRASPNIMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred cCCcccccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 763210 001123688998876554 4666999999999999999999999999999999999999999999
Q ss_pred cchhhHHHH-HHhhhcceeEeeec-------CCCCcccHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHh----c
Q 039043 364 GDQIINARL-MGEELKVGVEVEKG-------DEDGLFTRDGVCKAVKAVID-DDHSEVGKEIKENHAKWREFLRS----E 430 (449)
Q Consensus 364 ~DQ~~na~~-v~~~~G~G~~~~~~-------~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~a~~l~~~~~~----~ 430 (449)
+||+.||++ ++++ |+|+.++.. .+++.++.++|.++|+++|+ + ++||+||+++++.++. +
T Consensus 390 ~DQ~~Na~~~v~~~-g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~------~~~r~~a~~l~~~~~~av~~g 462 (481)
T PLN02554 390 AEQKFNAFEMVEEL-GLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD------SDVRKRVKEMSEKCHVALMDG 462 (481)
T ss_pred ccchhhHHHHHHHh-CceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHhcCC
Confidence 999999955 6665 999998741 01235899999999999997 6 8999999999999884 3
Q ss_pred CcchHHHHHHHHHHHhc
Q 039043 431 RLENSYLDGFVQKLHGL 447 (449)
Q Consensus 431 ~~~~~~~~~~~~~~~~~ 447 (449)
|++.+++++|++++.++
T Consensus 463 Gss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 463 GSSHTALKKFIQDVTKN 479 (481)
T ss_pred ChHHHHHHHHHHHHHhh
Confidence 77888999999999875
No 20
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.2e-56 Score=440.30 Aligned_cols=412 Identities=25% Similarity=0.395 Sum_probs=300.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHh-CCCEEEEEcCCcc-ccc-cCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAE-RGHRISFLLPAKA-ITK-FEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLH 77 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~-~~~-~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 77 (449)
++|+|++||++|++.||+.|+. +|+.|||++++.. ... .......++ ++|+.++ ++++.+.+... ....
T Consensus 8 ~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~-i~~~~i~----dglp~g~~~~~---~~~~ 79 (455)
T PLN02152 8 LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVEN-LSFLTFS----DGFDDGVISNT---DDVQ 79 (455)
T ss_pred EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCC-EEEEEcC----CCCCCcccccc---ccHH
Confidence 5899999999999999999996 6999999999853 222 221111123 8999987 67765433211 1233
Q ss_pred HHHHHHHhhcHHHHHHHHhhc----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCC
Q 039043 78 PLLMTAMDLTEPAIESVLRHL----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDN 151 (449)
Q Consensus 78 ~~~~~~~~~~~~~~~~ll~~~----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (449)
..+......+.+.+.+++++. +| +|||+|. .+|+..+|+++|||++.+++++++.+..+++.+...
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-------- 151 (455)
T PLN02152 80 NRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-------- 151 (455)
T ss_pred HHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--------
Confidence 344444444556666666653 34 9999999 999999999999999999999998877765543210
Q ss_pred CCCCCCCCCCCCccccCchhhchhhhhhhccCCC-c-hHHHHHHhhhcc--CCcEEEEcCccccccchHHHhhhhcCCCe
Q 039043 152 DLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGG-G-LSFAKRNLLSLS--ECDAIGFKTCREIEGPYCDYIGSQFGKPV 227 (449)
Q Consensus 152 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 227 (449)
+ ....+|+ +...+..+++.++...... . ...+.+...... .++.+++|||.+||+++++.+.. .++
T Consensus 152 ~---~~~~iPg----lp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v 221 (455)
T PLN02152 152 N---SVFEFPN----LPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEM 221 (455)
T ss_pred C---CeeecCC----CCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCE
Confidence 0 0112333 1112333444332201011 1 233333434332 24689999999999999888855 259
Q ss_pred EEeCccCCCC---C-C--c-----cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Q 039043 228 ILSGPALPES---P-R--F-----ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPV 296 (449)
Q Consensus 228 ~~vGp~~~~~---~-~--~-----~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 296 (449)
+.|||+.... . . . +.+.++.+|||.++++++|||||||+..++.+++.+++.+|+.++.+|||+++...
T Consensus 222 ~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~ 301 (455)
T PLN02152 222 VAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKL 301 (455)
T ss_pred EEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999997431 0 1 1 12346999999998889999999999999999999999999999999999997532
Q ss_pred CCC---c--c--ccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhH
Q 039043 297 GHD---T--I--ESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIIN 369 (449)
Q Consensus 297 ~~~---~--~--~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~n 369 (449)
..+ + . ...+|++|..+.+. |.++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.|
T Consensus 302 ~~~~~~~~~~~~~~~~~~~f~e~~~~-~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 380 (455)
T PLN02152 302 NREAKIEGEEETEIEKIAGFRHELEE-VGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPAN 380 (455)
T ss_pred ccccccccccccccccchhHHHhccC-CeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHH
Confidence 110 0 0 11246788777554 45666999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHH
Q 039043 370 ARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSE----RLENSYLDGFVQKL 444 (449)
Q Consensus 370 a~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~~~~~~~~~ 444 (449)
|+++++.||+|+.+.... ++.++.++|+++|+++|++ + +.+||+||+++++++++. |++.+.+++|++++
T Consensus 381 a~~~~~~~~~G~~~~~~~-~~~~~~e~l~~av~~vm~~---~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 381 AKLLEEIWKTGVRVRENS-EGLVERGEIRRCLEAVMEE---K-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHhCceEEeecCc-CCcCcHHHHHHHHHHHHhh---h-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999778888775321 2247999999999999975 2 356999999998888753 77888999999876
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.8e-55 Score=436.44 Aligned_cols=432 Identities=21% Similarity=0.278 Sum_probs=297.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCC---EEEEEcCCcccc-----ccCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGH---RISFLLPAKAIT-----KFEPS-NLHRNLITFIPVSVPRVDGLPPGAETTND 71 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh---~Vt~~~~~~~~~-----~~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~ 71 (449)
+||||++||++|++.||+.|+.+|. .||+.++..... .++.. ...++ |+|+.+|++. . +...+....
T Consensus 8 ~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~~--~-p~~~~~~~~ 83 (475)
T PLN02167 8 FVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPR-IRLVTLPEVQ--D-PPPMELFVK 83 (475)
T ss_pred EeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCC-eEEEECCCCC--C-Ccccccccc
Confidence 5899999999999999999999983 567766543211 12111 11233 9999998432 1 211110011
Q ss_pred CC-CCcHHHHHHHHhhcHHHHHHHHhhc------CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhh
Q 039043 72 VP-FPLHPLLMTAMDLTEPAIESVLRHL------KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKL 143 (449)
Q Consensus 72 ~~-~~~~~~~~~~~~~~~~~~~~ll~~~------~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 143 (449)
.. ..+...+......+.+.+.+++.+. +++|||+|. .+|+..+|+++|||++.|+++++..++.+++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~ 163 (475)
T PLN02167 84 ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERH 163 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhc
Confidence 01 1111122222222333334433221 248999999 999999999999999999999998877766544321
Q ss_pred ccccCC--CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh
Q 039043 144 RERTLT--DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS 221 (449)
Q Consensus 144 ~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 221 (449)
...... ...... ...+|+....++. .+++.... . ......+.+.......++.+++|||.+||+++++.+..
T Consensus 164 ~~~~~~~~~~~~~~-~~~iPgl~~~l~~---~dlp~~~~-~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 164 RKTASEFDLSSGEE-ELPIPGFVNSVPT---KVLPPGLF-M-KESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred cccccccccCCCCC-eeECCCCCCCCCh---hhCchhhh-C-cchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 111100 000000 1123331011222 22322211 0 01122333444556778899999999999999988865
Q ss_pred hc--CCCeEEeCccCCCCC--Ccc----chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 039043 222 QF--GKPVILSGPALPESP--RFA----LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALK 293 (449)
Q Consensus 222 ~~--~~~~~~vGp~~~~~~--~~~----~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 293 (449)
.. .+++++|||+..... ... ...++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||+++
T Consensus 238 ~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~ 317 (475)
T PLN02167 238 LPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIR 317 (475)
T ss_pred hcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 31 157999999975321 111 2256999999998899999999999999999999999999999999999998
Q ss_pred CCCCC-CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHH
Q 039043 294 PPVGH-DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARL 372 (449)
Q Consensus 294 ~~~~~-~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 372 (449)
..... ......+|++|.++.++++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 318 ~~~~~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~ 396 (475)
T PLN02167 318 TNPAEYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFT 396 (475)
T ss_pred cCcccccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHH
Confidence 53211 0013458999988876655 555999999999999999999999999999999999999999999999999987
Q ss_pred HHhhhcceeEeeec---CCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHH
Q 039043 373 MGEELKVGVEVEKG---DEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLH 445 (449)
Q Consensus 373 v~~~~G~G~~~~~~---~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~ 445 (449)
+.+.||+|+.+... ++++.++.++|+++|+++|.+. .+||+||+++++.++. +|++.+.+++|++.+.
T Consensus 397 ~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-----~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~ 471 (475)
T PLN02167 397 MVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-----DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLL 471 (475)
T ss_pred HHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44344999998642 1112479999999999999861 4899999999998874 4888999999999998
Q ss_pred hcc
Q 039043 446 GLL 448 (449)
Q Consensus 446 ~~~ 448 (449)
+.+
T Consensus 472 ~~~ 474 (475)
T PLN02167 472 GDH 474 (475)
T ss_pred hcC
Confidence 865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-46 Score=377.01 Aligned_cols=396 Identities=18% Similarity=0.213 Sum_probs=269.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCC------CCCCC-
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETT------NDVPF- 74 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~------~~~~~- 74 (449)
+|.++.+|..-+-+|+++|++|||+||++++..... .... ...+ ++.+.++... +.+....... .....
T Consensus 27 ~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (507)
T PHA03392 27 FPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-LCGN-ITEIDASLSV-EYFKKLVKSSAVFRKRGVVADS 102 (507)
T ss_pred cCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-CCCC-EEEEEcCCCh-HHHHHHHhhhhHHHhhhhhhhH
Confidence 466899999999999999999999999997764211 1100 0112 6665554211 1100000000 00000
Q ss_pred -Cc-H---HHHHHHHhh--cHHHHHHHHh--hcCCCEEEEcC-CCChHHHHHHh-CCceEEEecchHHHH--Hhhcchhh
Q 039043 75 -PL-H---PLLMTAMDL--TEPAIESVLR--HLKPDFVFFDF-THWLPPLARKF-GIKSVLYCIISPATI--GYLLSPER 141 (449)
Q Consensus 75 -~~-~---~~~~~~~~~--~~~~~~~ll~--~~~pD~vI~D~-~~~~~~~A~~~-giP~v~~~~~~~~~~--~~~~~~~~ 141 (449)
.. . ..+....+. ..+.+.++++ +.++|+||+|. ..|+..+|+.+ ++|+|.+++...... ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~g---- 178 (507)
T PHA03392 103 STVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMG---- 178 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhc----
Confidence 00 0 011111111 2345678887 67899999999 88999999999 999988877544321 1111
Q ss_pred hhccccCCCCCCCCCCCCCCCCccc--cCchhhchhhhhhh--------ccCCCch-HHHHH--------HhhhccCCcE
Q 039043 142 KLRERTLTDNDLLRPPQGFPTSKIR--LRAHEARGLAAATV--------KEFGGGL-SFAKR--------NLLSLSECDA 202 (449)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~l~~~~~--------~~~~~~~-~~~~~--------~~~~~~~~~~ 202 (449)
+...++.++|..... -++..+.++..++. ....... +...+ ..+...+..+
T Consensus 179 ----------g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l 248 (507)
T PHA03392 179 ----------AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQL 248 (507)
T ss_pred ----------cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcE
Confidence 011122233331110 01111111111100 0000000 11111 1234456678
Q ss_pred EEEcCccccccchHHHhhhhcCCCeEEeCccCCCC-CCccchhcccccccCCCCCeEEEEEeCCccc---CCHHHHHHHH
Q 039043 203 IGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES-PRFALEERWETLLGSFKSKSLIFCAFGSECV---LNKEQFQELV 278 (449)
Q Consensus 203 ~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~-~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~---~~~~~~~~~~ 278 (449)
+++|+...++++ +.+++++++|||+..+. +..++++++.+|++.++ +++|||||||+.. .+.+.+..++
T Consensus 249 ~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l 321 (507)
T PHA03392 249 LFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLL 321 (507)
T ss_pred EEEecCccccCC------CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHH
Confidence 999999988874 35788999999997743 33567889999999864 5799999999864 5678899999
Q ss_pred HHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEe
Q 039043 279 LGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLV 358 (449)
Q Consensus 279 ~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l 358 (449)
++++..+.+|||+++.... ...+| +|+.+.+|+||.++|+|+.+++||||||+||++||+++|||||
T Consensus 322 ~a~~~l~~~viw~~~~~~~----~~~~p---------~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v 388 (507)
T PHA03392 322 RTFKKLPYNVLWKYDGEVE----AINLP---------ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMV 388 (507)
T ss_pred HHHHhCCCeEEEEECCCcC----cccCC---------CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEE
Confidence 9999999999999875321 11344 4999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcC--cchHH
Q 039043 359 LLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSER--LENSY 436 (449)
Q Consensus 359 ~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~--~~~~~ 436 (449)
++|+.+||+.||+++++. |+|+.+++.+ ++.++|.++|+++|+| ++|+++|+++++.+++++ +.+++
T Consensus 389 ~iP~~~DQ~~Na~rv~~~-G~G~~l~~~~----~t~~~l~~ai~~vl~~------~~y~~~a~~ls~~~~~~p~~~~~~a 457 (507)
T PHA03392 389 GLPMMGDQFYNTNKYVEL-GIGRALDTVT----VSAAQLVLAIVDVIEN------PKYRKNLKELRHLIRHQPMTPLHKA 457 (507)
T ss_pred ECCCCccHHHHHHHHHHc-CcEEEeccCC----cCHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999998 9999999887 9999999999999999 999999999999999886 44555
Q ss_pred HHHHHHHHHhc
Q 039043 437 LDGFVQKLHGL 447 (449)
Q Consensus 437 ~~~~~~~~~~~ 447 (449)
+. .+|.+.++
T Consensus 458 v~-~iE~v~r~ 467 (507)
T PHA03392 458 IW-YTEHVIRN 467 (507)
T ss_pred HH-HHHHHHhC
Confidence 54 44444444
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=8.6e-46 Score=365.28 Aligned_cols=387 Identities=21% Similarity=0.249 Sum_probs=267.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCC--CC-CCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPP--GA-ETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~--~~-~~~~~~~~~~~~ 78 (449)
|.+|+.||++|++.||++|++|||+|+|++++.+.+.+++.| +.|..++. .+.. .. +...........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAG-----AEFVLYGS----ALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcC-----CEEEecCC----cCccccccccccCcchHHHHH
Confidence 578999999999999999999999999999999999999999 88988872 2211 00 000000011122
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCC
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPP 157 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (449)
.+........+.+.+++++++||+||+|. ++++..+|+++|||+|.+++.+.... ..+... . +.. .......
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~---~~~~~~-~--~~~-~~~~~~~ 144 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE---EFEEMV-S--PAG-EGSAEEG 144 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc---cccccc-c--ccc-hhhhhhh
Confidence 22222233445567777888999999999 88999999999999998865432110 001000 0 000 0000000
Q ss_pred CCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCC
Q 039043 158 QGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES 237 (449)
Q Consensus 158 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~ 237 (449)
...+. ... .....+..++. ..+........+. ....+..+..+.+.|.+ ....|+++++++||+....
T Consensus 145 ~~~~~---~~~-~~~~~~~~~r~-~~gl~~~~~~~~~--~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~~Gp~~~~~ 212 (392)
T TIGR01426 145 AIAER---GLA-EYVARLSALLE-EHGITTPPVEFLA--APRRDLNLVYTPKAFQP-----AGETFDDSFTFVGPCIGDR 212 (392)
T ss_pred ccccc---hhH-HHHHHHHHHHH-HhCCCCCCHHHHh--cCCcCcEEEeCChHhCC-----CccccCCCeEEECCCCCCc
Confidence 00000 000 00011211211 1110000011111 12233345555444444 2346788999999987653
Q ss_pred CCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 238 PRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
+. ...|....+++++||||+||+....++.+..+++++++.+.+++|.++.+.... ....++ +|
T Consensus 213 ~~------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~-~~~~~~---------~~ 276 (392)
T TIGR01426 213 KE------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA-DLGELP---------PN 276 (392)
T ss_pred cc------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh-HhccCC---------CC
Confidence 21 223666667788999999998777777888899999999999999987653211 111222 48
Q ss_pred EEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHH
Q 039043 318 FIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGV 397 (449)
Q Consensus 318 ~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l 397 (449)
+.+.+|+||.++|+++++ +|||||+||++||+++|||+|++|...||+.||.++++. |+|..+...+ +++++|
T Consensus 277 v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~~~----~~~~~l 349 (392)
T TIGR01426 277 VEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPPEE----VTAEKL 349 (392)
T ss_pred eEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecccc----CCHHHH
Confidence 999999999999999999 999999999999999999999999999999999999998 9999998776 899999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 398 CKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 398 ~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
.++|+++|+| ++|+++++++++.+...++..++++.+++.+.
T Consensus 350 ~~ai~~~l~~------~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 350 REAVLAVLSD------PRYAERLRKMRAEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHhcC------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 9999999999 99999999999999999989888888877654
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.5e-47 Score=389.71 Aligned_cols=391 Identities=23% Similarity=0.282 Sum_probs=223.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCC--C------Cc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVP--F------PL 76 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~--~------~~ 76 (449)
.+.+|+.++..|+++|++|||+||++++..... +...+ ..+ +++..++ ...+.......... . ..
T Consensus 8 ~~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~~-~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 8 MAYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPSK-PSN-IRFETYP----DPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp ----SHHHHHHHHHHHHHH-TTSEEEHHHHHHT--------S--CCEEEE---------TT------TTHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEEeecccc-ccccc-ccc-eeeEEEc----CCcchHHHhhhhHHHHHHHhhhccc
Confidence 478999999999999999999999998865322 22111 111 6677776 22222111100000 0 00
Q ss_pred ----HHHHHHH---HhhcH---------HHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcch
Q 039043 77 ----HPLLMTA---MDLTE---------PAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSP 139 (449)
Q Consensus 77 ----~~~~~~~---~~~~~---------~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 139 (449)
...+... ..... +.+.+.+++.++|++|+|. ..|+..+|+.+++|.+.+.+..+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~- 159 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFS- 159 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCT-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhc-
Confidence 0000000 00001 1122334445799999999 8899999999999998654433211100000
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCc----cccCch----------hhchhhhhhhccCCCc----hHHHHHHhhhccCCc
Q 039043 140 ERKLRERTLTDNDLLRPPQGFPTSK----IRLRAH----------EARGLAAATVKEFGGG----LSFAKRNLLSLSECD 201 (449)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~----------~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ 201 (449)
.+...++...|... ..+... ....+........... ........+.+.+..
T Consensus 160 -----------~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
T PF00201_consen 160 -----------GGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNAS 228 (500)
T ss_dssp -----------SCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHH
T ss_pred -----------cCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHH
Confidence 01111112222200 000000 0000000000000000 000001112233445
Q ss_pred EEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCH-HHHHHHHHH
Q 039043 202 AIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNK-EQFQELVLG 280 (449)
Q Consensus 202 ~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~-~~~~~~~~a 280 (449)
.+++|+...++.+ ++ ..+++.++|++.... ..+++.++..|++...++++|||||||.....+ +....++++
T Consensus 229 l~l~ns~~~ld~p-----rp-~~p~v~~vGgl~~~~-~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~ 301 (500)
T PF00201_consen 229 LVLINSHPSLDFP-----RP-LLPNVVEVGGLHIKP-AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEA 301 (500)
T ss_dssp HCCSSTEEE---------HH-HHCTSTTGCGC-S-----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHH
T ss_pred HHhhhccccCcCC-----cc-hhhcccccCcccccc-ccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHH
Confidence 5667776665542 33 445899999997654 345888999999986678899999999986445 448889999
Q ss_pred HHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEecc
Q 039043 281 FELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 360 (449)
Q Consensus 281 l~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 360 (449)
++.++.+|||++... ....+| +|+++.+|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 302 ~~~~~~~~iW~~~~~-----~~~~l~---------~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~ 367 (500)
T PF00201_consen 302 FENLPQRFIWKYEGE-----PPENLP---------KNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGI 367 (500)
T ss_dssp HHCSTTEEEEEETCS-----HGCHHH---------TTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-
T ss_pred HhhCCCccccccccc-----cccccc---------ceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCC
Confidence 999999999999763 223333 389999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchH-HHHH
Q 039043 361 PNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENS-YLDG 439 (449)
Q Consensus 361 P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~-~~~~ 439 (449)
|+++||+.||+++++. |+|+.++..+ +|.++|.++|+++|+| ++|++||+++++.+++++-+.. .+..
T Consensus 368 P~~~DQ~~na~~~~~~-G~g~~l~~~~----~~~~~l~~ai~~vl~~------~~y~~~a~~ls~~~~~~p~~p~~~~~~ 436 (500)
T PF00201_consen 368 PLFGDQPRNAARVEEK-GVGVVLDKND----LTEEELRAAIREVLEN------PSYKENAKRLSSLFRDRPISPLERAVW 436 (500)
T ss_dssp GCSTTHHHHHHHHHHT-TSEEEEGGGC-----SHHHHHHHHHHHHHS------HHHHHHHHHHHHTTT------------
T ss_pred CCcccCCccceEEEEE-eeEEEEEecC----CcHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999 9999999887 9999999999999999 9999999999999998743332 2333
Q ss_pred HHHHHHh
Q 039043 440 FVQKLHG 446 (449)
Q Consensus 440 ~~~~~~~ 446 (449)
.+|.+.+
T Consensus 437 ~ie~v~~ 443 (500)
T PF00201_consen 437 WIEYVAR 443 (500)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 4444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.5e-43 Score=346.25 Aligned_cols=374 Identities=17% Similarity=0.125 Sum_probs=251.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCC---CCCC----CCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGA---ETTN----DVP 73 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~---~~~~----~~~ 73 (449)
|+++|+.||++|++.||++|++|||+|+|++++.++..+++.| ++|..++ +...... .... ...
T Consensus 5 ~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 5 ITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAG-----LEFVPVG----GDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred EEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcC-----CceeeCC----CCHHHHHhhhhhcccccccch
Confidence 5789999999999999999999999999999999999999988 8888887 2211100 0000 000
Q ss_pred C---CcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC
Q 039043 74 F---PLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT 149 (449)
Q Consensus 74 ~---~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (449)
. .....+........+.+.+.+++++||+||+|. ++++..+|+++|||+|.+++++........++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~---------- 145 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPP---------- 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCc----------
Confidence 0 111223333344555666667778999999998 88899999999999999987664321110000
Q ss_pred CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccC---------CcEEEEcCccccccchHHHhh
Q 039043 150 DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSE---------CDAIGFKTCREIEGPYCDYIG 220 (449)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~s~~~l~~~~~~~~~ 220 (449)
. .. .+......+..... ..............+.. ....+.... +......
T Consensus 146 --------~--~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-----~~~~~~~ 204 (401)
T cd03784 146 --------L--GR----ANLRLYALLEAELW--QDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS-----PAVLPPP 204 (401)
T ss_pred --------c--ch----HHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC-----cccCCCC
Confidence 0 00 00000000000000 00000011111111110 111111111 1111123
Q ss_pred hhcCCCeEEeC-ccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCC
Q 039043 221 SQFGKPVILSG-PALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNK-EQFQELVLGFELSGLPFLVALKPPVGH 298 (449)
Q Consensus 221 ~~~~~~~~~vG-p~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~ 298 (449)
..|+++..++| ++.........+.++..|++. ++++||||+||+..... +.+..++++++..+.+++|+++.....
T Consensus 205 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~ 282 (401)
T cd03784 205 PDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG 282 (401)
T ss_pred CCccccCcEeCCCCCCCCCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc
Confidence 45666777776 333333223345567777765 46799999999987555 556778899998899999999875321
Q ss_pred CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhc
Q 039043 299 DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELK 378 (449)
Q Consensus 299 ~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 378 (449)
...+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++++. |
T Consensus 283 ---~~~~~---------~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~-G 347 (401)
T cd03784 283 ---AEDLP---------DNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAEL-G 347 (401)
T ss_pred ---ccCCC---------CceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHC-C
Confidence 11223 48999999999999999999 999999999999999999999999999999999999998 9
Q ss_pred ceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 039043 379 VGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 379 ~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 442 (449)
+|+.++..+ +++++|.++|++++++ + ++++++++++.++..++..++++.+.+
T Consensus 348 ~g~~l~~~~----~~~~~l~~al~~~l~~------~-~~~~~~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 348 AGPALDPRE----LTAERLAAALRRLLDP------P-SRRRAAALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred CCCCCCccc----CCHHHHHHHHHHHhCH------H-HHHHHHHHHHHHHhccCHHHHHHHHhh
Confidence 999998775 8999999999999996 5 566677787888777777777666643
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-42 Score=334.53 Aligned_cols=393 Identities=19% Similarity=0.218 Sum_probs=256.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|+..|+.||++|+++||++|.++||+|+|+|++.+++.++++| +.|..++..+.+ ........+....... .
T Consensus 6 ~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag-----~~f~~~~~~~~~--~~~~~~~~~~~~~~~~-~ 77 (406)
T COG1819 6 FVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG-----LAFVAYPIRDSE--LATEDGKFAGVKSFRR-L 77 (406)
T ss_pred EEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC-----cceeeccccCCh--hhhhhhhhhccchhHH-H
Confidence 4677889999999999999999999999999999999999999 889888832111 0101111111111111 2
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC-CCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT-DNDLLRPPQG 159 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (449)
..........+.+++.+..||+|+.|...+...+++..++|++...............+.. .+. .+....+...
T Consensus 78 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 152 (406)
T COG1819 78 LQQFKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLP-----PVGIAGKLPIPLYP 152 (406)
T ss_pred hhhhhhhhHHHHHHHHhcchhhhhcchhhhhhhhhhhcccchhhhhhhhccCCcccccCcc-----cccccccccccccc
Confidence 2223334566777889999999999983333389999999999765554443222221100 000 0000000111
Q ss_pred CCCCccc-cCchhhchhhhhhhccCCCchHHH-HHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCC
Q 039043 160 FPTSKIR-LRAHEARGLAAATVKEFGGGLSFA-KRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES 237 (449)
Q Consensus 160 ~p~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~ 237 (449)
++..... ....... +..... .....+... ..+...+.......+...+...++. ..++-...++||+....
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~ 225 (406)
T COG1819 153 LPPRLVRPLIFARSW-LPKLVV-RRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPG-----DRLPFIGPYIGPLLGEA 225 (406)
T ss_pred cChhhccccccchhh-hhhhhh-hhhccccccccchHHHhcCCCCccccccccccCCC-----CCCCCCcCccccccccc
Confidence 1110000 0000000 000000 000000000 0011111111111111111111100 12333456667666553
Q ss_pred CCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 238 PRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
. .+...| ...++++||+|+||.... .+.+..+++++..++.++|+.++.. +. ...++|+ |
T Consensus 226 ~-----~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~~--~~~~~p~---------n 285 (406)
T COG1819 226 A-----NELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-RD--TLVNVPD---------N 285 (406)
T ss_pred c-----ccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-cc--ccccCCC---------c
Confidence 2 122223 234577999999999977 7888889999999999999998762 21 2455665 9
Q ss_pred EEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHH
Q 039043 318 FIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGV 397 (449)
Q Consensus 318 ~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l 397 (449)
+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.++++. |+|..+..+. ++++.|
T Consensus 286 ~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~~~----l~~~~l 358 (406)
T COG1819 286 VIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPFEE----LTEERL 358 (406)
T ss_pred eEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCccc----CCHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999 9999999886 999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 398 CKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 398 ~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+++|+++|++ +.|+++++++++.++..++.+.+.+.+.+...+
T Consensus 359 ~~av~~vL~~------~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 359 RAAVNEVLAD------DSYRRAAERLAEEFKEEDGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHhcC------HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999998876677766665554
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.5e-40 Score=335.66 Aligned_cols=420 Identities=24% Similarity=0.275 Sum_probs=245.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEec---CCCC-CCCCCCCCCCCCCCCCc
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVS---VPRV-DGLPPGAETTNDVPFPL 76 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p---~~~~-~~l~~~~~~~~~~~~~~ 76 (449)
++++|++||++|+..+|+.|+++||+||++++.......... .....+.....+ +... ++++...+.........
T Consensus 10 l~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (496)
T KOG1192|consen 10 LVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLDISES 88 (496)
T ss_pred EEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHHHHHHH
Confidence 468899999999999999999999999999988766554331 100001111111 0000 11211111100000000
Q ss_pred HHHHHHHHhhcHHH-HHHHHhh--cCCCEEEEcC-CCChHHHHHHhC-CceEEEecchHHHHHhhcchhhhhccccCCCC
Q 039043 77 HPLLMTAMDLTEPA-IESVLRH--LKPDFVFFDF-THWLPPLARKFG-IKSVLYCIISPATIGYLLSPERKLRERTLTDN 151 (449)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~ll~~--~~pD~vI~D~-~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (449)
...+.......... ....... .++|++|+|. ..+...+|.... ++..++.+..+.......+.+.. ..+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~--~~p~~~~ 166 (496)
T KOG1192|consen 89 LLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS--YVPSPFS 166 (496)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--ccCcccC
Confidence 11111111111111 2222211 2399999999 667776776664 88888877777665443332211 0000000
Q ss_pred CCCCCCCCCCCCccccCchhhchhhhhhhccCCCc--h-HHHHHHhhhc----cCCcEEEEcC-ccccccchHHHh-hhh
Q 039043 152 DLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGG--L-SFAKRNLLSL----SECDAIGFKT-CREIEGPYCDYI-GSQ 222 (449)
Q Consensus 152 ~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~~~~~~----~~~~~~l~~s-~~~l~~~~~~~~-~~~ 222 (449)
........++.....+.. ..+..... ..... . .......... ......+.++ +..++....... ...
T Consensus 167 ~~~~~~~~~~~~~~n~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~~~~ 242 (496)
T KOG1192|consen 167 LSSGDDMSFPERVPNLIK---KDLPSFLF-SLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFEPRP 242 (496)
T ss_pred ccccccCcHHHHHHHHHH---HHHHHHHH-HHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCCCCC
Confidence 000000111100000000 00111000 00000 0 0000110000 0111222222 333333333223 222
Q ss_pred cCCCeEEeCccCCCCCCccchhcccccccCCCCC--eEEEEEeCCcc---cCCHHHHHHHHHHHHhC-CCCEEEEEcCCC
Q 039043 223 FGKPVILSGPALPESPRFALEERWETLLGSFKSK--SLIFCAFGSEC---VLNKEQFQELVLGFELS-GLPFLVALKPPV 296 (449)
Q Consensus 223 ~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k--~~v~vs~GS~~---~~~~~~~~~~~~al~~~-~~~~i~~~~~~~ 296 (449)
..+++++|||+........ .....+|++..+.. ++|||||||+. .++.++...++.+++.+ +.+|+|++....
T Consensus 243 ~~~~v~~IG~l~~~~~~~~-~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~ 321 (496)
T KOG1192|consen 243 LLPKVIPIGPLHVKDSKQK-SPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD 321 (496)
T ss_pred CCCCceEECcEEecCcccc-ccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 4678999999987632211 11233455544443 79999999999 69999999999999999 888999998753
Q ss_pred CCCccccCCChhHHHhcCCCeEEEeccchhhhh-hcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHh
Q 039043 297 GHDTIESALPEGFEERVKGRGFIHGGWVQQQLI-LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGE 375 (449)
Q Consensus 297 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~l-L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 375 (449)
.. .++.++..+ ..+|++..+|+||.++ |+|+++++|||||||||++|++++|||||++|+++||+.||+++++
T Consensus 322 ~~-----~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~ 395 (496)
T KOG1192|consen 322 SI-----YFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVR 395 (496)
T ss_pred ch-----hhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHh
Confidence 21 122332222 3458899999999998 6999999999999999999999999999999999999999999999
Q ss_pred hhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 376 ELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 376 ~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
. |.|..+.+.+ ++...+.+++.+++++ ++|+++++++++..++++.....+...++...
T Consensus 396 ~-g~~~v~~~~~----~~~~~~~~~~~~il~~------~~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~~ 454 (496)
T KOG1192|consen 396 H-GGGGVLDKRD----LVSEELLEAIKEILEN------EEYKEAAKRLSEILRDQPISPELAVKWVEFVA 454 (496)
T ss_pred C-CCEEEEehhh----cCcHHHHHHHHHHHcC------hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9 6666666665 6666699999999999 99999999999999988766644443334433
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.5e-25 Score=216.22 Aligned_cols=325 Identities=20% Similarity=0.180 Sum_probs=204.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc--ccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAIT--KFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~--~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
-+.=||+.|.+++|++|.++||+|+|++++.-.+ .+.+.| +.+..++. .++.. .. ....+.
T Consensus 9 GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g-----~~~~~~~~---~~l~~----~~-----~~~~~~ 71 (352)
T PRK12446 9 GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKEN-----IPYYSISS---GKLRR----YF-----DLKNIK 71 (352)
T ss_pred CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccC-----CcEEEEec---cCcCC----Cc-----hHHHHH
Confidence 3556999999999999999999999999776543 344556 77777762 12210 00 111122
Q ss_pred HHHh--hcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCC
Q 039043 82 TAMD--LTEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRP 156 (449)
Q Consensus 82 ~~~~--~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (449)
.... ...-....++++.+||+||+.- +..+..+|+.+++|+++.....
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~--------------------------- 124 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM--------------------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC---------------------------
Confidence 2211 1223455679999999999865 4557899999999998752211
Q ss_pred CCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC-CCeEEeCccCC
Q 039043 157 PQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG-KPVILSGPALP 235 (449)
Q Consensus 157 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~~ 235 (449)
.++ + .+++. .+.++.+ +.+|++ .. ..++ .++.++|+...
T Consensus 125 ---~~g------------~--------------~nr~~--~~~a~~v-~~~f~~----~~----~~~~~~k~~~tG~Pvr 164 (352)
T PRK12446 125 ---TPG------------L--------------ANKIA--LRFASKI-FVTFEE----AA----KHLPKEKVIYTGSPVR 164 (352)
T ss_pred ---Ccc------------H--------------HHHHH--HHhhCEE-EEEccc----hh----hhCCCCCeEEECCcCC
Confidence 111 0 00111 1112222 222221 11 1222 46789996654
Q ss_pred CCCCccchhcccccccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcC
Q 039043 236 ESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNK-EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVK 314 (449)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 314 (449)
+.-...........+...+++++|+|..||+..... +.+..++..+. .+.+++|.+|.... + .....
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~-----~----~~~~~-- 232 (352)
T PRK12446 165 EEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL-----D----DSLQN-- 232 (352)
T ss_pred cccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH-----H----HHHhh--
Confidence 421111111111223334567899999999996444 33333444443 24788998876421 0 00101
Q ss_pred CCeEEEeccc-hh-hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc-----cchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWV-QQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV-----GDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~-pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
..++.+..|+ ++ .++++++++ +|||||.+|++|++++|+|+|++|+. .||..||..+++. |+|..+...+
T Consensus 233 ~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l~~~~ 309 (352)
T PRK12446 233 KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVLYEED 309 (352)
T ss_pred cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEcchhc
Confidence 1245566787 54 579999999 99999999999999999999999974 5899999999999 9999998776
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHH-HHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGK-EIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~-~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++++.|.+++.++++| + .+++++++++ ...+++.+++.+.
T Consensus 310 ----~~~~~l~~~l~~ll~~------~~~~~~~~~~~~--------~~~aa~~i~~~i~ 350 (352)
T PRK12446 310 ----VTVNSLIKHVEELSHN------NEKYKTALKKYN--------GKEAIQTIIDHIS 350 (352)
T ss_pred ----CCHHHHHHHHHHHHcC------HHHHHHHHHHcC--------CCCHHHHHHHHHH
Confidence 9999999999999987 4 4554443322 2245555555553
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.9e-25 Score=214.36 Aligned_cols=299 Identities=18% Similarity=0.209 Sum_probs=191.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCC-CCCCCCCCCcHHHH--
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGA-ETTNDVPFPLHPLL-- 80 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~-~~~~~~~~~~~~~~-- 80 (449)
.-|.||+.++++||++| |||+|+|++.....+.+.+. +....++ .+.... ....+.........
T Consensus 9 ~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 75 (318)
T PF13528_consen 9 GHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------FPVREIP-----GLGPIQENGRLDRWKTVRNNIRW 75 (318)
T ss_pred CCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------cCEEEcc-----CceEeccCCccchHHHHHHHHHh
Confidence 34899999999999999 59999999999776666432 3344444 111111 11111111111111
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
..........+.+++++.+||+||+|..+.+..+|+..|+|++.+.+........ ..+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~~~----------------------~~~ 133 (318)
T PF13528_consen 76 LARLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLHPN----------------------FWL 133 (318)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHccccc----------------------CCc
Confidence 1122334556778889999999999995557899999999999887766532100 000
Q ss_pred CCCccccCchhhchhhhhhhccCCCchHHHHHHhh-h-ccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCC
Q 039043 161 PTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLL-S-LSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESP 238 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~ 238 (449)
+. . ..+. ....++.. . ...+...+.-++. .. .....+..++||+..+..
T Consensus 134 ~~-----~----~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~p~~~~~~ 184 (318)
T PF13528_consen 134 PW-----D----QDFG-----------RLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVGPIIRPEI 184 (318)
T ss_pred ch-----h----hhHH-----------HHHHHhhhhccCCcccceecCCcc-cc--------ccccccccccCchhcccc
Confidence 00 0 0000 11111111 1 2333444433332 10 011124667888765432
Q ss_pred CccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 239 RFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSG-LPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 239 ~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
.. .. ..+++.|+|++|+.... .++++++..+ .++++. +.... .. ..+|
T Consensus 185 ~~--------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~-----~~---------~~~n 233 (318)
T PF13528_consen 185 RE--------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA-----DP---------RPGN 233 (318)
T ss_pred cc--------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc-----cc---------cCCC
Confidence 11 00 12345899999988633 6667777665 566666 44311 11 1358
Q ss_pred EEEeccc--hhhhhhcCCCccceeccCCchhHHHHHhhCCcEecccc--ccchhhHHHHHHhhhcceeEeeecCCCCccc
Q 039043 318 FIHGGWV--QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN--VGDQIINARLMGEELKVGVEVEKGDEDGLFT 393 (449)
Q Consensus 318 ~~~~~~~--pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 393 (449)
+.+.++. +..++++.|++ +|||||+||++||+++|+|+|++|. ..||..||+.++++ |+|..++..+ ++
T Consensus 234 i~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~~~----~~ 306 (318)
T PF13528_consen 234 IHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQED----LT 306 (318)
T ss_pred EEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEccccc----CC
Confidence 8888876 34689999999 9999999999999999999999998 78999999999999 9999999876 99
Q ss_pred HHHHHHHHHHH
Q 039043 394 RDGVCKAVKAV 404 (449)
Q Consensus 394 ~~~l~~~i~~l 404 (449)
++.|++.|+++
T Consensus 307 ~~~l~~~l~~~ 317 (318)
T PF13528_consen 307 PERLAEFLERL 317 (318)
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=1.1e-23 Score=201.81 Aligned_cols=298 Identities=14% Similarity=0.123 Sum_probs=175.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEE-EEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLIT-FIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
.-.|.||+.|.++||++|.+ ||+|+|+++......+...| +. +..+| ++.....+. .+ .....+.
T Consensus 7 ~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-----~~~~~~~p-----~~~~~~~~~-~~--~~~~~l~ 72 (321)
T TIGR00661 7 CGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-----FKVFETFP-----GIKLKGEDG-KV--NIVKTLR 72 (321)
T ss_pred eccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-----CcceeccC-----CceEeecCC-cC--cHHHHHH
Confidence 34578999999999999999 99999999888666666655 43 33333 111100000 00 1222221
Q ss_pred ---HHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCC
Q 039043 82 ---TAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQ 158 (449)
Q Consensus 82 ---~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (449)
...........+++++.+||+||+|..+.+..+|+.+|||++.+..+....
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~~q~~~~-------------------------- 126 (321)
T TIGR00661 73 NKEYSPKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLKIPVICISNQNYTR-------------------------- 126 (321)
T ss_pred hhccccHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEecchhhc--------------------------
Confidence 110123445667889999999999996666889999999999876643211
Q ss_pred CCCCCccccCchhhchhhhhhhccCCCchHHHHHH-hhhccCCcEEEEcCccccccchHHHhhhhcCCCeE-EeCccCCC
Q 039043 159 GFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRN-LLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVI-LSGPALPE 236 (449)
Q Consensus 159 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~-~vGp~~~~ 236 (449)
+|.. . .... ....+. ......++......++.... ..++... .-+|..
T Consensus 127 -~~~~---~-----~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~~-- 176 (321)
T TIGR00661 127 -YPLK---T-----DLIV-----------YPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIKNMEGPLI-- 176 (321)
T ss_pred -CCcc---c-----chhH-----------HHHHHHHHHhccccceEeeecCCCCCC--------CCccccccCCCccc--
Confidence 0100 0 0000 000011 11111222222222211110 0010000 001111
Q ss_pred CCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCC
Q 039043 237 SPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGR 316 (449)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~ 316 (449)
..+..+|.. .+++.|+|.+||.. ...+++++++.+. +.+.++..+. ....++ .
T Consensus 177 ------~~~~~~~~~--~~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~---~~~~~~---------~ 229 (321)
T TIGR00661 177 ------RYDVDDVDN--YGEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV---AKNSYN---------E 229 (321)
T ss_pred ------chhhhcccc--CCCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC---CccccC---------C
Confidence 111222222 13457888888865 3455677766552 3333332211 112222 4
Q ss_pred eEEEeccch--hhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcc
Q 039043 317 GFIHGGWVQ--QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLF 392 (449)
Q Consensus 317 ~~~~~~~~p--q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~ 392 (449)
|+.+.+|.| ..+.|+.+++ +|||||++|++||+++|+|++++|.. .||..||..+++. |+|+.++..+ +
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~~----~ 302 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYKE----L 302 (321)
T ss_pred CEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChhh----H
Confidence 888889997 4578899999 99999999999999999999999985 4999999999999 9999998765 4
Q ss_pred cHHHHHHHHHHHhcC
Q 039043 393 TRDGVCKAVKAVIDD 407 (449)
Q Consensus 393 ~~~~l~~~i~~ll~~ 407 (449)
++.+++.++++|
T Consensus 303 ---~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 ---RLLEAILDIRNM 314 (321)
T ss_pred ---HHHHHHHhcccc
Confidence 666677777777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=4.6e-22 Score=189.74 Aligned_cols=301 Identities=17% Similarity=0.212 Sum_probs=192.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCC-EEEEEcCCccccc--cCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGH-RISFLLPAKAITK--FEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~~~~~~--~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
-++=||+.|.++|+++|.++|+ +|.+..+....+. ....+ +++..++.. ++... .....+
T Consensus 8 gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~-----~~~~~I~~~---~~~~~---------~~~~~~ 70 (357)
T COG0707 8 GGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYG-----IEFELIPSG---GLRRK---------GSLKLL 70 (357)
T ss_pred CCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccC-----ceEEEEecc---ccccc---------CcHHHH
Confidence 4566999999999999999999 5777766554433 33335 788888732 11110 011111
Q ss_pred HH--HHhhcHHHHHHHHhhcCCCEEEEc--C-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCC
Q 039043 81 MT--AMDLTEPAIESVLRHLKPDFVFFD--F-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLR 155 (449)
Q Consensus 81 ~~--~~~~~~~~~~~ll~~~~pD~vI~D--~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (449)
.. .......+...++++.+||+||+- + +..+..+|..+|||+++.-...
T Consensus 71 ~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~-------------------------- 124 (357)
T COG0707 71 KAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA-------------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC--------------------------
Confidence 11 122345678889999999999984 4 7788899999999999763221
Q ss_pred CCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeC-ccC
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSG-PAL 234 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG-p~~ 234 (449)
.++ + ..+...+. ++. +..+++..+. . .-..++..+| |+.
T Consensus 125 ----~~G------------~----------ank~~~~~------a~~-V~~~f~~~~~----~---~~~~~~~~tG~Pvr 164 (357)
T COG0707 125 ----VPG------------L----------ANKILSKF------AKK-VASAFPKLEA----G---VKPENVVVTGIPVR 164 (357)
T ss_pred ----Ccc------------h----------hHHHhHHh------hce-eeeccccccc----c---CCCCceEEecCccc
Confidence 111 0 00111111 111 1112211000 0 0012477777 443
Q ss_pred CCCCCccchhcccccccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc
Q 039043 235 PESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNK-EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV 313 (449)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~ 313 (449)
.+-.. .+.....+ +...++++|+|+.||+....- +.+..+...+.+ +..+++.++... -..+....
T Consensus 165 ~~~~~--~~~~~~~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~---------~~~~~~~~ 231 (357)
T COG0707 165 PEFEE--LPAAEVRK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND---------LEELKSAY 231 (357)
T ss_pred HHhhc--cchhhhhh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---------HHHHHHHH
Confidence 32211 11111111 112267799999999986332 223333333433 467777776642 12222222
Q ss_pred CCCe-EEEeccchhh-hhhcCCCccceeccCCchhHHHHHhhCCcEecccc-c---cchhhHHHHHHhhhcceeEeeecC
Q 039043 314 KGRG-FIHGGWVQQQ-LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN-V---GDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 314 ~~~~-~~~~~~~pq~-~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~-~---~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
...+ +.+..|++++ ++++.+|+ +||++|.+|+.|++++|+|+|.+|+ . .||..||+.+++. |.|..++..+
T Consensus 232 ~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~~~~ 308 (357)
T COG0707 232 NELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIRQSE 308 (357)
T ss_pred hhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEecccc
Confidence 2233 7888898875 79999999 9999999999999999999999997 2 4899999999999 9999999987
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
+|++.|.+.|.+++++
T Consensus 309 ----lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 309 ----LTPEKLAELILRLLSN 324 (357)
T ss_pred ----CCHHHHHHHHHHHhcC
Confidence 9999999999999997
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=3.9e-19 Score=173.37 Aligned_cols=333 Identities=16% Similarity=0.122 Sum_probs=203.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc--ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKA--ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
-+.-||...++.||++|.++||+|++++.+.. ....++.| +++..++.+ ++.. ......+.
T Consensus 9 ~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g-----~~~~~~~~~---~~~~---------~~~~~~l~ 71 (357)
T PRK00726 9 GGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAG-----IEFHFIPSG---GLRR---------KGSLANLK 71 (357)
T ss_pred CcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCC-----CcEEEEecc---CcCC---------CChHHHHH
Confidence 34569999999999999999999999988663 22333345 667766621 1110 00111111
Q ss_pred HH--HhhcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCC
Q 039043 82 TA--MDLTEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRP 156 (449)
Q Consensus 82 ~~--~~~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (449)
.. .-.....+.+++++.+||+|++.. ...+..+++..++|+|......
T Consensus 72 ~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------------- 124 (357)
T PRK00726 72 APFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA--------------------------- 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC---------------------------
Confidence 11 122445678889999999999985 3445667888899998531100
Q ss_pred CCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCC
Q 039043 157 PQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPE 236 (449)
Q Consensus 157 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~ 236 (449)
.+. . .. +.. ...++.+++.+...+ . . .-+.++.++|+....
T Consensus 125 ---~~~--------~---~~---------------r~~--~~~~d~ii~~~~~~~-----~--~-~~~~~i~vi~n~v~~ 165 (357)
T PRK00726 125 ---VPG--------L---AN---------------KLL--ARFAKKVATAFPGAF-----P--E-FFKPKAVVTGNPVRE 165 (357)
T ss_pred ---Ccc--------H---HH---------------HHH--HHHhchheECchhhh-----h--c-cCCCCEEEECCCCCh
Confidence 000 0 00 000 011222222111100 0 0 122457777755432
Q ss_pred CCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHH-HHHHHHhCCC--CEEEEEcCCCCCCccccCCChhHHHhc
Q 039043 237 SPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQE-LVLGFELSGL--PFLVALKPPVGHDTIESALPEGFEERV 313 (449)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~lp~~~~~~~ 313 (449)
......... .. +...+++++|++..|+.. ...+.. +..++++... .+++.+|.+.. +.+....
T Consensus 166 ~~~~~~~~~-~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---------~~~~~~~ 231 (357)
T PRK00726 166 EILALAAPP-AR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL---------EEVRAAY 231 (357)
T ss_pred Hhhcccchh-hh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH---------HHHHHHh
Confidence 110000000 01 122234456766555543 222333 3355554433 34555665421 1222111
Q ss_pred C-CCeEEEeccch-hhhhhcCCCccceeccCCchhHHHHHhhCCcEecccc----ccchhhHHHHHHhhhcceeEeeecC
Q 039043 314 K-GRGFIHGGWVQ-QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 314 ~-~~~~~~~~~~p-q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
. .-++.+.+|++ ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+. |.|..+...+
T Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~ 308 (357)
T PRK00726 232 AAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSD 308 (357)
T ss_pred hcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEccc
Confidence 1 11378889985 4689999999 9999999999999999999999997 46899999999999 9999998876
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++++.|.++|.++++| ++.+++..+-++......+..+.++.+++.+.+
T Consensus 309 ----~~~~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (357)
T PRK00726 309 ----LTPEKLAEKLLELLSD------PERLEAMAEAARALGKPDAAERLADLIEELARK 357 (357)
T ss_pred ----CCHHHHHHHHHHHHcC------HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhhC
Confidence 7899999999999999 888877777777766667777777777776543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=4.5e-18 Score=165.40 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=185.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc--cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAI--TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
+.-||+...+.||+.|.++||+|++++..... ......| +++..+++.. ... ......+..
T Consensus 8 ~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~---------~~~~~~~~~ 70 (350)
T cd03785 8 GTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAG-----IPLHTIPVGG---LRR---------KGSLKKLKA 70 (350)
T ss_pred CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccC-----CceEEEEecC---cCC---------CChHHHHHH
Confidence 44599999999999999999999999876432 1122223 6666666211 100 011111211
Q ss_pred HH--hhcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCC
Q 039043 83 AM--DLTEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPP 157 (449)
Q Consensus 83 ~~--~~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (449)
.. -.....+.+++++.+||+|++.. +..+..+|+..|+|++.....
T Consensus 71 ~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------------------- 121 (350)
T cd03785 71 PFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------------------- 121 (350)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------------------
Confidence 11 22345677888999999999875 444577889999999853110
Q ss_pred CCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCC
Q 039043 158 QGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES 237 (449)
Q Consensus 158 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~ 237 (449)
.++. . ..+. ....++.+++.+....+. ..+.++.++|......
T Consensus 122 -~~~~------------~--------------~~~~--~~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~v~~~ 164 (350)
T cd03785 122 -AVPG------------L--------------ANRL--LARFADRVALSFPETAKY--------FPKDKAVVTGNPVREE 164 (350)
T ss_pred -CCcc------------H--------------HHHH--HHHhhCEEEEcchhhhhc--------CCCCcEEEECCCCchH
Confidence 0000 0 0000 011244444433221111 1123567777544321
Q ss_pred CCccchhcccccccCCCCCeEEEEEeCCcccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCC
Q 039043 238 PRFALEERWETLLGSFKSKSLIFCAFGSECVLNK-EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGR 316 (449)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~ 316 (449)
.....+. .+.+...+++++|++..|+...... +.+..++..+...+..+++.++.+. .+.+...+ ... ..
T Consensus 165 ~~~~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~-----~~~l~~~~-~~~-~~ 235 (350)
T cd03785 165 ILALDRE--RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD-----LEEVKKAY-EEL-GV 235 (350)
T ss_pred Hhhhhhh--HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-----HHHHHHHH-hcc-CC
Confidence 1000111 1222223445567776666643221 1222333444333344556665541 11111111 111 35
Q ss_pred eEEEeccc-hhhhhhcCCCccceeccCCchhHHHHHhhCCcEecccc----ccchhhHHHHHHhhhcceeEeeecCCCCc
Q 039043 317 GFIHGGWV-QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINARLMGEELKVGVEVEKGDEDGL 391 (449)
Q Consensus 317 ~~~~~~~~-pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 391 (449)
++.+.+|+ +..++|+.+++ +|+++|.+++.||+.+|+|+|+.|. ..+|..|+..+.+. |.|..++..+
T Consensus 236 ~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~---- 308 (350)
T cd03785 236 NYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEE---- 308 (350)
T ss_pred CeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCC----
Confidence 89999998 44689999999 9999999999999999999999985 46899999999998 9999998764
Q ss_pred ccHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 039043 392 FTRDGVCKAVKAVIDDDHSEVGKEIKENHAK 422 (449)
Q Consensus 392 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~ 422 (449)
.++++|.++|++++++ ++.+++...
T Consensus 309 ~~~~~l~~~i~~ll~~------~~~~~~~~~ 333 (350)
T cd03785 309 LTPERLAAALLELLSD------PERLKAMAE 333 (350)
T ss_pred CCHHHHHHHHHHHhcC------HHHHHHHHH
Confidence 6899999999999988 655544433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.77 E-value=1.9e-16 Score=144.16 Aligned_cols=327 Identities=18% Similarity=0.229 Sum_probs=200.6
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCC-CCCCCCCEEEEEecCCCCCCCCC--CCCCCCCCCCCcHHH
Q 039043 5 FAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEP-SNLHRNLITFIPVSVPRVDGLPP--GAETTNDVPFPLHPL 79 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~-~g~~~~~i~~~~~p~~~~~~l~~--~~~~~~~~~~~~~~~ 79 (449)
-+.||+.+++.||++|.+. |.+|++++......-+.- .| ++++.+| .-... +.....+..-+
T Consensus 20 ~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~g-----Vd~V~LP----sl~k~~~G~~~~~d~~~~---- 86 (400)
T COG4671 20 LGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAG-----VDFVKLP----SLIKGDNGEYGLVDLDGD---- 86 (400)
T ss_pred ccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCccc-----CceEecC----ceEecCCCceeeeecCCC----
Confidence 4789999999999999998 999999998876655544 46 9999998 21111 11111111111
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCC
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQG 159 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (449)
+.+....-.+-+...++.++||++|+|..+.++ --+ + .|+. .+... .+
T Consensus 87 l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Gl-r~E-L-~ptL----------~yl~~-------------------~~ 134 (400)
T COG4671 87 LEETKKLRSQLILSTAETFKPDIFIVDKFPFGL-RFE-L-LPTL----------EYLKT-------------------TG 134 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeccccch-hhh-h-hHHH----------HHHhh-------------------cC
Confidence 222222233456778888999999999944441 111 0 1110 00000 00
Q ss_pred CCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHh-hhhcCCCeEEeCccCCCCC
Q 039043 160 FPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYI-GSQFGKPVILSGPALPESP 238 (449)
Q Consensus 160 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~ 238 (449)
+ ...+-...+.+.+... ...++........-+..+.+++...+.+..+...+. ......+++|+|.+..+.+
T Consensus 135 -t--~~vL~lr~i~D~p~~~----~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~ 207 (400)
T COG4671 135 -T--RLVLGLRSIRDIPQEL----EADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLP 207 (400)
T ss_pred -C--cceeehHhhhhchhhh----ccchhhhHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCc
Confidence 0 0001111222222111 122222222222233456777776666544222211 2234457999999922212
Q ss_pred CccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh-CCC--CEEEEEcCCCCCCccccCCChhHHHh---
Q 039043 239 RFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFEL-SGL--PFLVALKPPVGHDTIESALPEGFEER--- 312 (449)
Q Consensus 239 ~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~--~~i~~~~~~~~~~~~~~~lp~~~~~~--- 312 (449)
..+.|.. .. +++.-|+||-|... ...+.+.+.++|-.. .+. ++++++|.. +|......
T Consensus 208 ~~~~p~~-----~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~---------MP~~~r~~l~~ 271 (400)
T COG4671 208 HLPLPPH-----EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF---------MPEAQRQKLLA 271 (400)
T ss_pred CCCCCCc-----CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC---------CCHHHHHHHHH
Confidence 2222221 11 34458888888665 556777777776432 343 366666553 44433221
Q ss_pred --cCCCeEEEeccchh-hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc---cchhhHHHHHHhhhcceeEeeec
Q 039043 313 --VKGRGFIHGGWVQQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV---GDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 313 --~~~~~~~~~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
.+.+++.+..|-.+ ..++..++. +|+-||+||++|-|.+|||.|++|.. -||-.-|.|++++ |+.-.+..+
T Consensus 272 ~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe 348 (400)
T COG4671 272 SAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPE 348 (400)
T ss_pred hcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhc-CcceeeCcc
Confidence 22478999899876 579999999 99999999999999999999999974 4999999999998 999999988
Q ss_pred CCCCcccHHHHHHHHHHHhc
Q 039043 387 DEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~ 406 (449)
+ ++++.|+++|...++
T Consensus 349 ~----lt~~~La~al~~~l~ 364 (400)
T COG4671 349 N----LTPQNLADALKAALA 364 (400)
T ss_pred c----CChHHHHHHHHhccc
Confidence 7 999999999999998
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=2.9e-16 Score=152.56 Aligned_cols=314 Identities=15% Similarity=0.128 Sum_probs=172.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc--cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI--TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
+.-+..||+...+.||++|.++||+|++++.+... ...+..| +++..++...... . .....
T Consensus 6 ~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g-----~~~~~i~~~~~~~--------~----~~~~~ 68 (348)
T TIGR01133 6 AAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAG-----IEFYFIPVGGLRR--------K----GSFRL 68 (348)
T ss_pred EeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCC-----CceEEEeccCcCC--------C----ChHHH
Confidence 34556799998889999999999999999875421 1122334 6666665211000 0 01111
Q ss_pred HHHH--HhhcHHHHHHHHhhcCCCEEEEcC-C--CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCC
Q 039043 80 LMTA--MDLTEPAIESVLRHLKPDFVFFDF-T--HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLL 154 (449)
Q Consensus 80 ~~~~--~~~~~~~~~~ll~~~~pD~vI~D~-~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (449)
+... .......+.+++++.+||+|++.. . ..+..+++.+++|++......
T Consensus 69 l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------- 123 (348)
T TIGR01133 69 IKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA------------------------- 123 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 2111 122345678889999999999986 3 345567888899997421100
Q ss_pred CCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccC
Q 039043 155 RPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPAL 234 (449)
Q Consensus 155 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 234 (449)
.+. ... +. ..+.++.+++.+...-+ .+ ...++|.-.
T Consensus 124 -----~~~-----------~~~---------------~~--~~~~~d~ii~~~~~~~~---------~~--~~~~i~n~v 159 (348)
T TIGR01133 124 -----VPG-----------LTN---------------KL--LSRFAKKVLISFPGAKD---------HF--EAVLVGNPV 159 (348)
T ss_pred -----Ccc-----------HHH---------------HH--HHHHhCeeEECchhHhh---------cC--CceEEcCCc
Confidence 000 000 00 01123333332211100 00 124444322
Q ss_pred CCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHH-HHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc
Q 039043 235 PESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKE-QFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV 313 (449)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~ 313 (449)
...... .+.. .+.+...+++++|.+..|+....... .+...+..+...+.++++..+.+. . ..+....
T Consensus 160 ~~~~~~-~~~~-~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~-----~----~~l~~~~ 228 (348)
T TIGR01133 160 RQEIRS-LPVP-RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND-----L----EKVKNVY 228 (348)
T ss_pred CHHHhc-ccch-hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch-----H----HHHHHHH
Confidence 111000 0000 01122223344554444555421111 111223333333455655444321 1 1121111
Q ss_pred CC---CeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc---cchhhHHHHHHhhhcceeEeeecC
Q 039043 314 KG---RGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV---GDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 314 ~~---~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.. .+++...+-+..++|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+++. |.|..++..+
T Consensus 229 ~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~~ 305 (348)
T TIGR01133 229 QELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQKE 305 (348)
T ss_pred hhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEeccc
Confidence 11 12221112245689999999 99999988999999999999999863 4788899999998 9999888765
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE 425 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~ 425 (449)
.++++|.++|+++++| ++.+++..+-++
T Consensus 306 ----~~~~~l~~~i~~ll~~------~~~~~~~~~~~~ 333 (348)
T TIGR01133 306 ----LLPEKLLEALLKLLLD------PANLEAMAEAAR 333 (348)
T ss_pred ----CCHHHHHHHHHHHHcC------HHHHHHHHHHHH
Confidence 6899999999999998 666554444333
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=1.6e-16 Score=155.67 Aligned_cols=342 Identities=13% Similarity=0.098 Sum_probs=195.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
+.-||+.|. +||++|+++|++|+|++... ..+++.|.+.. +.+..+++ .++. +....+.. .
T Consensus 14 gtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~~~-~~~~~l~v---~G~~-----------~~l~~~~~-~ 74 (385)
T TIGR00215 14 EASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCEVL-YSMEELSV---MGLR-----------EVLGRLGR-L 74 (385)
T ss_pred CccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCccc-cChHHhhh---ccHH-----------HHHHHHHH-H
Confidence 455999999 99999999999999998764 24555552211 33333331 1111 01111111 2
Q ss_pred hhcHHHHHHHHhhcCCCEEEE-cC-CCChHH--HHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 85 DLTEPAIESVLRHLKPDFVFF-DF-THWLPP--LARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~-D~-~~~~~~--~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
........+++++.+||+||+ |+ ++.... +|+.+|||++...+ +-.+ .+
T Consensus 75 ~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~w--------------------------aw 127 (385)
T TIGR00215 75 LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQVW--------------------------AW 127 (385)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcHh--------------------------hc
Confidence 224457888999999999986 77 666445 89999999986531 1000 00
Q ss_pred CCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCC-CC
Q 039043 161 PTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES-PR 239 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~-~~ 239 (449)
+. ...+...+. ++.+++. ++ .+. +... ..+.+..++|.-..+. ..
T Consensus 128 ~~----------------------~~~r~l~~~------~d~v~~~-~~-~e~---~~~~-~~g~~~~~vGnPv~~~~~~ 173 (385)
T TIGR00215 128 RK----------------------WRAKKIEKA------TDFLLAI-LP-FEK---AFYQ-KKNVPCRFVGHPLLDAIPL 173 (385)
T ss_pred Cc----------------------chHHHHHHH------HhHhhcc-CC-CcH---HHHH-hcCCCEEEECCchhhhccc
Confidence 00 001111111 2222211 11 111 1111 1223567788433221 11
Q ss_pred c-cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCCccccCCChhHHHhc
Q 039043 240 F-ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFEL---S--GLPFLVALKPPVGHDTIESALPEGFEERV 313 (449)
Q Consensus 240 ~-~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~ 313 (449)
. +...+..+-+.-.+++++|.+..||....-...+..++++++. . +.++++....... ...+ +.+....
T Consensus 174 ~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~----~~~~-~~~~~~~ 248 (385)
T TIGR00215 174 YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR----RLQF-EQIKAEY 248 (385)
T ss_pred cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh----HHHH-HHHHHHh
Confidence 0 1112222223333456788888888875323334445544432 2 2345454433211 0001 1111111
Q ss_pred C-CCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEecc----cccc---------chhhHHHHHHhhhcc
Q 039043 314 K-GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL----PNVG---------DQIINARLMGEELKV 379 (449)
Q Consensus 314 ~-~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~----P~~~---------DQ~~na~~v~~~~G~ 379 (449)
. ...+.+..+ +..++++.+|+ +|+-+|..|+ |++++|+|+|++ |+.. .|..|+..+.+. ++
T Consensus 249 ~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~ 323 (385)
T TIGR00215 249 GPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LL 323 (385)
T ss_pred CCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-cc
Confidence 1 123333222 34569999999 9999999988 999999999999 7631 378899999998 99
Q ss_pred eeEeeecCCCCcccHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 039043 380 GVEVEKGDEDGLFTRDGVCKAVKAVIDDDHS----EVGKEIKENHAKWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 380 G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~----~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 442 (449)
...+...+ .|++.|.+.+.++|+| . +..+++++..+++.+.+.+.+.+.++++.+++
T Consensus 324 ~pel~q~~----~~~~~l~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 324 VPELLQEE----CTPHPLAIALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred chhhcCCC----CCHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 99988776 9999999999999998 2 23356777777777777655667777776654
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=6.4e-16 Score=144.49 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=149.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCccc---cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAI---TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~---~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
|.||+.++++||++|+++||+|+|++..... +.+++.| +.+..++ +.- .
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g-----~~v~~~~----~~~----~--------------- 64 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAG-----FPVYELP----DES----S--------------- 64 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcC-----CeEEEec----CCC----c---------------
Confidence 6899999999999999999999999987543 4455666 7777776 210 0
Q ss_pred HHhhcHHHHHHHHhhcCCCEEEEcC-CCChH--HHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCC
Q 039043 83 AMDLTEPAIESVLRHLKPDFVFFDF-THWLP--PLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQG 159 (449)
Q Consensus 83 ~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (449)
...-...+.+++++.+||+||+|. ..... ...+..+.+++.+.-....
T Consensus 65 -~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~---------------------------- 115 (279)
T TIGR03590 65 -RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADR---------------------------- 115 (279)
T ss_pred -hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCC----------------------------
Confidence 011223578888888999999998 54442 2233345555543110000
Q ss_pred CCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC-CCeEEeCc---cCC
Q 039043 160 FPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG-KPVILSGP---ALP 235 (449)
Q Consensus 160 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~~vGp---~~~ 235 (449)
-..++.++-.+.. -+ ...+. ...+ ....+.|| ++.
T Consensus 116 -------------------------------------~~~~D~vin~~~~-~~--~~~y~-~~~~~~~~~l~G~~Y~~lr 154 (279)
T TIGR03590 116 -------------------------------------PHDCDLLLDQNLG-AD--ASDYQ-GLVPANCRLLLGPSYALLR 154 (279)
T ss_pred -------------------------------------CcCCCEEEeCCCC-cC--HhHhc-ccCcCCCeEEecchHHhhh
Confidence 0012222211110 00 00000 0000 12345554 211
Q ss_pred CCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhHHHh-
Q 039043 236 ESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGFEER- 312 (449)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~- 312 (449)
+. ... ........++.+.|+|+||...... ....++++++.. +.++.+++|..... .+.+...
T Consensus 155 ~e----F~~-~~~~~~~~~~~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~~-------~~~l~~~~ 220 (279)
T TIGR03590 155 EE----FYQ-LATANKRRKPLRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNPN-------LDELKKFA 220 (279)
T ss_pred HH----HHH-hhHhhhcccccCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCcC-------HHHHHHHH
Confidence 10 000 0000001112357899999665433 344566666543 45688888775321 1223221
Q ss_pred cCCCeEEEeccchhh-hhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHH
Q 039043 313 VKGRGFIHGGWVQQQ-LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARL 372 (449)
Q Consensus 313 ~~~~~~~~~~~~pq~-~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 372 (449)
....|+.+..++++. ++++.+++ +||+|| +|+.|++++|+|+|++|...+|..||+.
T Consensus 221 ~~~~~i~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 221 KEYPNIILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HhCCCEEEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 123589899999986 89999999 999999 9999999999999999999999999975
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=6.4e-15 Score=144.92 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=113.1
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHh--cCCCeEEEeccchhh-hh
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEER--VKGRGFIHGGWVQQQ-LI 329 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~~~pq~-~l 329 (449)
++++++++..|+.... ..+..++.++... +.+++++.+.+.. +-+.+... ....++.+.+|+++. ++
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 3456788877877532 2355666666543 4566666654311 00111111 112479888999875 79
Q ss_pred hcCCCccceeccCCchhHHHHHhhCCcEecc-ccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCC
Q 039043 330 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLL-PNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDD 408 (449)
Q Consensus 330 L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 408 (449)
++.+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. . +++++.++|.++++|
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~--~------~~~~l~~~i~~ll~~- 338 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI--R------DDEEVFAKTEALLQD- 338 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE--C------CHHHHHHHHHHHHCC-
Confidence 999999 99999988999999999999985 6777788999999988 988642 2 678999999999998
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 409 HSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++.+++..+-+..+....+..+.++.+++.+..
T Consensus 339 -----~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 339 -----DMKLLQMKEAMKSLYLPEPADHIVDDILAENHV 371 (380)
T ss_pred -----HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhh
Confidence 655544443333343344555666666665543
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.58 E-value=8.9e-14 Score=136.86 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=72.0
Q ss_pred hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc------cc--hhhH-----HHHHHhhhcceeEeeecCCCCccc
Q 039043 327 QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV------GD--QIIN-----ARLMGEELKVGVEVEKGDEDGLFT 393 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~------~D--Q~~n-----a~~v~~~~G~G~~~~~~~~~~~~~ 393 (449)
.++++.+|+ +|+.+|.+++ ||+++|+|+|+.|.. .+ |..| +..+.+. +++..+...+ .+
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~----~~ 327 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEE----AT 327 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCC----CC
Confidence 578999999 9999998887 999999999988532 22 2222 2233333 3333344444 79
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 394 RDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 394 ~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++.|.++|.++++| .+..++|+++++.+.+.+ ..+...+.++.+.+.+.+
T Consensus 328 ~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 328 PEKLARALLPLLAD--GARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 99999999999998 122334455555555555 455666666766665543
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.55 E-value=2.8e-16 Score=135.85 Aligned_cols=136 Identities=14% Similarity=0.242 Sum_probs=98.7
Q ss_pred EEEEEeCCcccCCH-HHHHHHHHHHHh--CCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccch-hhhhhcCC
Q 039043 258 LIFCAFGSECVLNK-EQFQELVLGFEL--SGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQ-QQLILKHP 333 (449)
Q Consensus 258 ~v~vs~GS~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p-q~~lL~~~ 333 (449)
+|+|+.||.....- +.+..+...+.. ...++++.+|...... ....+ .....++.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~-----~~~~~--~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE-----LKIKV--ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH-----HCCCH--CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH-----HHHHH--hccCCcEEEEechhhHHHHHHHc
Confidence 48999998874322 223334444433 2578899888763211 11100 00115889999999 67899999
Q ss_pred CccceeccCCchhHHHHHhhCCcEecccccc----chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 334 SVGCFVTHCGSGSLSEAMVNECQLVLLPNVG----DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 334 ~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
|+ +|||||.||++|++.+|+|+|++|... +|..||..+++. |+|..+...+ .+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~----~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESE----LNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-----SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCccc----CCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999987 999999999999 9999999876 7899999999999998
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.53 E-value=1.1e-12 Score=128.95 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=107.1
Q ss_pred ccCCCCCeEEEEEeCCcccCCHHHHHHHHHH-HH-----hCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEecc
Q 039043 250 LGSFKSKSLIFCAFGSECVLNKEQFQELVLG-FE-----LSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGW 323 (449)
Q Consensus 250 l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~a-l~-----~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 323 (449)
+...+++++|.+..|+........+...+.. +. ..+.++++.+|.+.. .. +.+.......++.+.+|
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~---~~----~~L~~~~~~~~v~~~G~ 272 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK---LQ----SKLESRDWKIPVKVRGF 272 (382)
T ss_pred cCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH---HH----HHHHhhcccCCeEEEec
Confidence 3333456677777666654333333222221 20 123456777765411 00 11111111246888899
Q ss_pred chhh-hhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchh-hHHHHHHhhhcceeEeeecCCCCcccHHHHHHHH
Q 039043 324 VQQQ-LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQI-INARLMGEELKVGVEVEKGDEDGLFTRDGVCKAV 401 (449)
Q Consensus 324 ~pq~-~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i 401 (449)
+++. ++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|..+ . ++++|.++|
T Consensus 273 ~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~--~------~~~~la~~i 341 (382)
T PLN02605 273 VTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS--E------SPKEIARIV 341 (382)
T ss_pred cccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec--C------CHHHHHHHH
Confidence 9874 79999999 999999999999999999999998765665 799999988 999753 2 789999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 402 KAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 402 ~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
.+++++. ++.+++...-+..........+.++.+.+.+.
T Consensus 342 ~~ll~~~-----~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 342 AEWFGDK-----SDELEAMSENALKLARPEAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHcCC-----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhh
Confidence 9999861 33333333333333333334445555555443
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.50 E-value=1.1e-11 Score=121.72 Aligned_cols=360 Identities=15% Similarity=0.089 Sum_probs=187.3
Q ss_pred CCCCCHHHHHHHHHHHHh--CCCEEE---EEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 5 FAMGHLTPFLHIANKLAE--RGHRIS---FLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~--rGh~Vt---~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
-+.|-=.-.++||++|.+ .|++|. |++.....+. .. +.... | ...++.+..... .....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~---~~-----ip~~g-~---~~~~~sgg~~~~----~~~~~ 68 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQN---LG-----IPIIG-P---TKELPSGGFSYQ----SLRGL 68 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhh---CC-----CceeC-C---CCCCCCCCccCC----CHHHH
Confidence 344445567889999998 699999 9988865431 11 11111 1 123333221111 12223
Q ss_pred HHHHHh---hcHHHHHHHHhhc--CCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCC
Q 039043 80 LMTAMD---LTEPAIESVLRHL--KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDL 153 (449)
Q Consensus 80 ~~~~~~---~~~~~~~~ll~~~--~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (449)
+..... ...-.-..+++++ +||+||+-- .. +..+|...|+|++++.+.-.-. .+.
T Consensus 69 ~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~------~~~------------ 129 (396)
T TIGR03492 69 LRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDY------YWE------------ 129 (396)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccce------eec------------
Confidence 333222 2223445567778 999999877 44 8899999999999854321100 000
Q ss_pred CCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCcc
Q 039043 154 LRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPA 233 (449)
Q Consensus 154 ~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~ 233 (449)
..++++. .+.... ..+..+..+++..-..+.++.+.+. ++ . ..+.+.. .+.++.++|..
T Consensus 130 --~~~~~~~----------~~~~~~---~~G~~~~p~e~n~l~~~~a~~v~~~-~~-~---t~~~l~~-~g~k~~~vGnP 188 (396)
T TIGR03492 130 --SGPRRSP----------SDEYHR---LEGSLYLPWERWLMRSRRCLAVFVR-DR-L---TARDLRR-QGVRASYLGNP 188 (396)
T ss_pred --CCCCCcc----------chhhhc---cCCCccCHHHHHHhhchhhCEEeCC-CH-H---HHHHHHH-CCCeEEEeCcC
Confidence 0001110 000000 0011111111111112334444432 21 1 1222222 23479999944
Q ss_pred CCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCccccCCCh-h
Q 039043 234 LPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELS----GLPFLVALKPPVGHDTIESALPE-G 308 (449)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~lp~-~ 308 (449)
..+.-...... . + .+++++|.+-.||........+..++.+++.. +..+++.+......+.....+.+ +
T Consensus 189 v~d~l~~~~~~---~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g 262 (396)
T TIGR03492 189 MMDGLEPPERK---P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLG 262 (396)
T ss_pred HHhcCcccccc---c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcC
Confidence 33321110111 1 1 23456888888988654444455566555543 45677777433211100000000 0
Q ss_pred HHH---------hcCCCeEEEeccchh-hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhh--
Q 039043 309 FEE---------RVKGRGFIHGGWVQQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEE-- 376 (449)
Q Consensus 309 ~~~---------~~~~~~~~~~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-- 376 (449)
... ....+++.+..+..+ .++++.+++ +|+-+|..| .|++.+|+|+|++|.-..|. |+...++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~ 338 (396)
T TIGR03492 263 WQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSR 338 (396)
T ss_pred ceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHh
Confidence 000 001123555455444 579999999 999999766 99999999999999877786 88776652
Q ss_pred -hcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHHHHHhcCcchHHHHHHHH
Q 039043 377 -LKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHA-KWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 377 -~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~ 442 (449)
.|.+..+.. .+.+.|.+++.++++| ++..++.. ..++.+.+.+.+.+.++.+.+
T Consensus 339 l~g~~~~l~~------~~~~~l~~~l~~ll~d------~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 339 LLGGSVFLAS------KNPEQAAQVVRQLLAD------PELLERCRRNGQERMGPPGASARIAESILK 394 (396)
T ss_pred hcCCEEecCC------CCHHHHHHHHHHHHcC------HHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 255555543 3569999999999998 66655444 333444433444444444443
No 43
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.49 E-value=3.4e-12 Score=125.77 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=109.5
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHH-Hh-CCCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccchhh-hh
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGF-EL-SGLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWVQQQ-LI 329 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~pq~-~l 329 (449)
+++++|+++.|+... ...+..+++++ +. .+.+++++.|.+.. +-+.+.... ...++.+.+|+++. ++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~-------l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE-------LKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH-------HHHHHHHHhccCCCeEEEeccchHHHH
Confidence 456688888888762 23444555553 32 24566666654311 001122111 23478888999764 79
Q ss_pred hcCCCccceeccCCchhHHHHHhhCCcEecc-ccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCC
Q 039043 330 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLL-PNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDD 408 (449)
Q Consensus 330 L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 408 (449)
++.+|+ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+++. |+|+.+ -+.+++.++|.++++|
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~--------~~~~~l~~~i~~ll~~- 338 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIA--------DTPEEAIKIVASLTNG- 338 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEe--------CCHHHHHHHHHHHhcC-
Confidence 999999 99998888999999999999998 7767778999999999 999653 2678899999999988
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 409 HSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++..++.++-+.......+..+.++.+++.+.
T Consensus 339 -----~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 339 -----NEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred -----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 44333322222222223344555566655543
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.43 E-value=2.2e-10 Score=111.20 Aligned_cols=334 Identities=16% Similarity=0.148 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhh
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDL 86 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (449)
-|+...+..|+++|.++||+|++++.......-... ..+.+..++.+ ... .... ...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~-------~~~~---------~~~ 70 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA----RVVPVPSVPLP---GYP-------EIRL---------ALP 70 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC----CceeecccccC---ccc-------ceEe---------ccc
Confidence 689999999999999999999999987643221110 00222111100 000 0000 000
Q ss_pred cHHHHHHHHhhcCCCEEEEcC-C---CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCCCC
Q 039043 87 TEPAIESVLRHLKPDFVFFDF-T---HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPT 162 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~-~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (449)
....+...+++.+||+|++.. . ..+..++++.++|++.............. ..
T Consensus 71 ~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------~~- 127 (364)
T cd03814 71 PRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYY----------------------GL- 127 (364)
T ss_pred chhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhc----------------------cc-
Confidence 123456666888999998765 2 34567788899999875443221100000 00
Q ss_pred CccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCC---CC
Q 039043 163 SKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPES---PR 239 (449)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~---~~ 239 (449)
. .. ..... .........++.+++.+....+ ........++..+.+-.... +.
T Consensus 128 ----------~-~~-------~~~~~--~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~ 182 (364)
T cd03814 128 ----------G-PL-------SWLAW--AYLRWFHNRADRVLVPSPSLAD-----ELRARGFRRVRLWPRGVDTELFHPR 182 (364)
T ss_pred ----------c-hH-------hHhhH--HHHHHHHHhCCEEEeCCHHHHH-----HHhccCCCceeecCCCccccccCcc
Confidence 0 00 00000 0011123456666665543322 11111122333333222110 11
Q ss_pred ccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 240 FALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 240 ~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
.........+. .+++.+++..|+... ...+.+..++..+... +..++ .+|.+... ..+. ....+
T Consensus 183 ~~~~~~~~~~~---~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~-i~G~~~~~--------~~~~--~~~~~ 248 (364)
T cd03814 183 RRDEALRARLG---PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLV-IVGDGPAR--------ARLE--ARYPN 248 (364)
T ss_pred cccHHHHHHhC---CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEE-EEeCCchH--------HHHh--ccCCc
Confidence 11111111221 123356667777653 3334444444444332 23333 44433211 1111 23458
Q ss_pred EEEeccchhh---hhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 318 FIHGGWVQQQ---LILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 318 ~~~~~~~pq~---~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
+.+.+|+++. ++++.+++ +|+.+. .+++.||+++|+|+|+.+..+ +...+++. +.|..++..
T Consensus 249 v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~~~---- 317 (364)
T cd03814 249 VHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVEPG---- 317 (364)
T ss_pred EEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcCCC----
Confidence 9999998865 47888998 887654 378999999999999887654 45566666 888777654
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+.+++.++|.+++++ ++.+++...-+......-+-...++.+++.+
T Consensus 318 --~~~~l~~~i~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 --DAEAFAAALAALLAD------PELRRRMAARARAEAERRSWEAFLDNLLEAY 363 (364)
T ss_pred --CHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 778899999999998 5554444443333333444455555555543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.30 E-value=5e-13 Score=111.76 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=77.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|.+.|+.||++|+++||++|++|||+|++++++.+.+.+++.| ++|..++.. ..++.. . .....+
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~G-----l~~~~~~~~--~~~~~~----~----~~~~~~ 67 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAG-----LEFVPIPGD--SRLPRS----L----EPLANL 67 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT------EEEESSSC--GGGGHH----H----HHHHHH
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccC-----ceEEEecCC--cCcCcc----c----chhhhh
Confidence 4678999999999999999999999999999999999999999 999999821 000000 0 011111
Q ss_pred HHHHhh--cHHHHHHHHhhc------------CCCEEEEcC-CCChHHHHHHhCCceEEEecchHH
Q 039043 81 MTAMDL--TEPAIESVLRHL------------KPDFVFFDF-THWLPPLARKFGIKSVLYCIISPA 131 (449)
Q Consensus 81 ~~~~~~--~~~~~~~ll~~~------------~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~ 131 (449)
...... ....+.+.+++. .+|+++.+. ...+..+|+++|||++.....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 68 RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111111 112222222221 578888888 888999999999999988766654
No 46
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.28 E-value=4.5e-09 Score=103.79 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCeEEEeccchhhh---hhcCCCccceeccC---C-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQL---ILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~~---lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+|+|+.+ +++.+++ +++.+ | ..++.||+++|+|+|+.... .....+++. +.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~~- 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDPR- 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCCC-
Confidence 46899999999754 5888998 77542 2 36899999999999987654 355567776 788777653
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
+.+++.++|.+++++
T Consensus 354 -----~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 -----DPEALAAALRRLLTD 368 (398)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 799999999999998
No 47
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.27 E-value=1.6e-08 Score=97.78 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=81.1
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hhhc
Q 039043 256 KSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LILK 331 (449)
Q Consensus 256 k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~lL~ 331 (449)
.+.+++..|+... ...+.+...+..+...+.+++ .+|...... ..........++.+.+++++. ++++
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~-i~G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELV-IVGNGLELE-------EESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEE-EEcCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 3466667777653 223333334333333234444 344432110 000000234689999999754 4688
Q ss_pred CCCccceec----cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 332 HPSVGCFVT----HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 332 ~~~~~~~I~----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
.+++ +|+ ..|. .++.||+++|+|+|+.+.. .+...+.+. +.|..++.. +.+++.+++.++++
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~------d~~~l~~~i~~l~~ 328 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPPG------DAEDLAAALERLID 328 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECCC------CHHHHHHHHHHHHh
Confidence 8998 773 2344 4789999999999986643 455566665 678777654 78999999999999
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
+
T Consensus 329 ~ 329 (359)
T cd03823 329 D 329 (359)
T ss_pred C
Confidence 8
No 48
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.25 E-value=1.3e-08 Score=98.70 Aligned_cols=348 Identities=15% Similarity=0.016 Sum_probs=175.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHh
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMD 85 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (449)
..|+..-...+++.|.+.||+|++++...........- .... . ............... .......
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~------~~~~-~----~~~~~~~~~~~~~~~----~~~~~~~ 77 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL------KGRL-V----GVERLPVLLPVVPLL----KGPLLYL 77 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc------cccc-c----cccccccCcchhhcc----ccchhHH
Confidence 57888899999999999999999999876544322210 0000 0 000000000000000 0011112
Q ss_pred hcHHHHHHHHh--hcCCCEEEEcC-CC---ChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCC
Q 039043 86 LTEPAIESVLR--HLKPDFVFFDF-TH---WLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQG 159 (449)
Q Consensus 86 ~~~~~~~~ll~--~~~pD~vI~D~-~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (449)
.....+..+++ ..+||+|++.. .. .+..+++..++|++......... .
T Consensus 78 ~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------------~ 131 (377)
T cd03798 78 LAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN--------------------------L 131 (377)
T ss_pred HHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc--------------------------c
Confidence 24456777787 88999999876 32 33566677788988654332211 0
Q ss_pred CCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhh--cCCCeEEeCccCCCC
Q 039043 160 FPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQ--FGKPVILSGPALPES 237 (449)
Q Consensus 160 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~--~~~~~~~vGp~~~~~ 237 (449)
... .. .........+..++.+++.+.... +..... ...++..++......
T Consensus 132 ~~~---------------------~~--~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~~~~i~~~~~~~ 183 (377)
T cd03798 132 LPR---------------------KR--LLRALLRRALRRADAVIAVSEALA-----DELKALGIDPEKVTVIPNGVDTE 183 (377)
T ss_pred cCc---------------------hh--hHHHHHHHHHhcCCeEEeCCHHHH-----HHHHHhcCCCCceEEcCCCcCcc
Confidence 000 00 000111223445666666553221 122221 223455555433221
Q ss_pred CCccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCC
Q 039043 238 PRFALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGR 316 (449)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~ 316 (449)
.-......-...+.. ..+..+++..|+... ...+.+...+..+...+.++.+.+-+.... ...+..-.......+
T Consensus 184 ~~~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~---~~~~~~~~~~~~~~~ 259 (377)
T cd03798 184 RFSPADRAEARKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPL---REALEALAAELGLED 259 (377)
T ss_pred cCCCcchHHHHhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcc---hHHHHHHHHhcCCcc
Confidence 100000000000111 223366677777654 223444444444443333444333222110 001100001111246
Q ss_pred eEEEeccchhh---hhhcCCCccceec----cCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 317 GFIHGGWVQQQ---LILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 317 ~~~~~~~~pq~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+-+.. .....+.+. +.|...+..
T Consensus 260 ~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~~--- 329 (377)
T cd03798 260 RVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPPG--- 329 (377)
T ss_pred eEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECCC---
Confidence 89999999874 57788888 663 24557899999999999986654 344556665 667666653
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.+++.++|.+++++ +.. +..+.....+.+.-+.....+.+.+.+++
T Consensus 330 ---~~~~l~~~i~~~~~~------~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 330 ---DPEALAEAILRLLAD------PWL-RLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred ---CHHHHHHHHHHHhcC------cHH-HHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 899999999999998 553 33333333333333444556666665543
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=6.6e-09 Score=100.99 Aligned_cols=331 Identities=17% Similarity=0.147 Sum_probs=166.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
+...-|+......++++|.++||+|+++++........... ......+ ... . .. ....
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~------~~~--~--------~~-~~~~ 67 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV-----VVVRPFR------VPT--F--------KY-PDFR 67 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc-----ccccccc------ccc--c--------hh-hhhh
Confidence 34566899999999999999999999998765433222111 1111111 000 0 00 0000
Q ss_pred HHhhcHHHHHHHHhhcCCCEEEEcC-C---CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCC
Q 039043 83 AMDLTEPAIESVLRHLKPDFVFFDF-T---HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQ 158 (449)
Q Consensus 83 ~~~~~~~~~~~ll~~~~pD~vI~D~-~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (449)
........+...+++.+||+|++.. . ..+..++++.++|++.................
T Consensus 68 ~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------ 129 (374)
T cd03817 68 LPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLG------------------ 129 (374)
T ss_pred ccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcc------------------
Confidence 0011223455568888999998875 2 23456778899998865443332110000000
Q ss_pred CCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh-hcCCCeEEeCccCCCC
Q 039043 159 GFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS-QFGKPVILSGPALPES 237 (449)
Q Consensus 159 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~-~~~~~~~~vGp~~~~~ 237 (449)
. . . .............+..++.+++.+...- +.... ....++..+.+.....
T Consensus 130 ~---------~-----~--------~~~~~~~~~~~~~~~~~d~i~~~s~~~~-----~~~~~~~~~~~~~vi~~~~~~~ 182 (374)
T cd03817 130 R---------L-----L--------ARAVVRRKLSRRFYNRCDAVIAPSEKIA-----DLLREYGVKRPIEVIPTGIDLD 182 (374)
T ss_pred c---------c-----h--------hHHHHHHHHHHHHhhhCCEEEeccHHHH-----HHHHhcCCCCceEEcCCccchh
Confidence 0 0 0 0000000112233455676666553211 11111 1112233333221111
Q ss_pred C-Cccchh-cccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhHHHh
Q 039043 238 P-RFALEE-RWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGFEER 312 (449)
Q Consensus 238 ~-~~~~~~-~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~ 312 (449)
. ...... .... +.. .+++.+++..|+... ...+.+..++..+... +.++++. +.+.. . +.+...
T Consensus 183 ~~~~~~~~~~~~~-~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~-G~~~~----~----~~~~~~ 251 (374)
T cd03817 183 RFEPVDGDDERRK-LGI-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIV-GDGPE----R----EELEEL 251 (374)
T ss_pred ccCccchhHHHHh-cCC-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEE-eCCch----H----HHHHHH
Confidence 0 000000 0011 111 223355666777654 3334444544444432 3334433 32211 1 111111
Q ss_pred ----cCCCeEEEeccchhh---hhhcCCCccceeccC----CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 313 ----VKGRGFIHGGWVQQQ---LILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 313 ----~~~~~~~~~~~~pq~---~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
...+++.+.+++|+. .+++.+++ +|..+ ..+++.||+++|+|+|+... ...+..+++. +.|.
T Consensus 252 ~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~ 324 (374)
T cd03817 252 ARELGLADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGF 324 (374)
T ss_pred HHHcCCCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeE
Confidence 224689999999875 47888998 77443 34789999999999998654 3455666766 7787
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFL 427 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~ 427 (449)
.++..+ . ++.+++.+++++. +...++.+++++.....
T Consensus 325 ~~~~~~------~-~~~~~i~~l~~~~--~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 325 LFPPGD------E-ALAEALLRLLQDP--ELRRRLSKNAEESAEKF 361 (374)
T ss_pred EeCCCC------H-HHHHHHHHHHhCh--HHHHHHHHHHHHHHHHH
Confidence 777653 2 9999999999981 22233555555554443
No 50
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.24 E-value=1.3e-08 Score=98.25 Aligned_cols=345 Identities=17% Similarity=0.075 Sum_probs=176.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHh
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMD 85 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (449)
.-|+...+..++++|.+.||+|++++............ ..... ... ... ..........
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~--------~~~~~---~~~---------~~~-~~~~~~~~~~ 71 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV--------GGIVV---VRP---------PPL-LRVRRLLLLL 71 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee--------cCcce---ecC---------Ccc-cccchhHHHH
Confidence 37899999999999999999999999876543322110 00000 000 000 0001111111
Q ss_pred hcHHHHHHHHhhcCCCEEEEcC-CCChH--HHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCCCC
Q 039043 86 LTEPAIESVLRHLKPDFVFFDF-THWLP--PLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPT 162 (449)
Q Consensus 86 ~~~~~~~~ll~~~~pD~vI~D~-~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (449)
.....+...+++.+||+|++.. ..... ..+...++|++........... ..
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------------------------~~ 125 (374)
T cd03801 72 LLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP--------------------------GN 125 (374)
T ss_pred HHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc--------------------------cc
Confidence 2334567778888999999877 33333 5788889999866443321100 00
Q ss_pred CccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC---CCeEEeCccCCCCCC
Q 039043 163 SKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG---KPVILSGPALPESPR 239 (449)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~---~~~~~vGp~~~~~~~ 239 (449)
. .... ...............+.+++.+.... +.....+. .++..+.+-.....-
T Consensus 126 ----~-----~~~~---------~~~~~~~~~~~~~~~d~~i~~s~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~ 182 (374)
T cd03801 126 ----E-----LGLL---------LKLARALERRALRRADRIIAVSEATR-----EELRELGGVPPEKITVIPNGVDTERF 182 (374)
T ss_pred ----c-----hhHH---------HHHHHHHHHHHHHhCCEEEEecHHHH-----HHHHhcCCCCCCcEEEecCccccccc
Confidence 0 0000 00011112233455666666654322 22222222 245555433221110
Q ss_pred ccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 240 FALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 240 ~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
...+.....-... ..+...++.+|+... ...+.+...+..+...+.++ ++.++.+.. ...+-.-........+
T Consensus 183 ~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~ 257 (374)
T cd03801 183 RPAPRAARRRLGI-PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPL----REELEALAAELGLGDR 257 (374)
T ss_pred CccchHHHhhcCC-cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHH----HHHHHHHHHHhCCCcc
Confidence 0000000011111 223356667777653 22333444444443332233 233332210 0000000001123468
Q ss_pred EEEeccchhh---hhhcCCCccceec----cCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 318 FIHGGWVQQQ---LILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 318 ~~~~~~~pq~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
+.+.+++++. +++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+++. +.|..++..
T Consensus 258 v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~~---- 326 (374)
T cd03801 258 VTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPPG---- 326 (374)
T ss_pred eEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCCC----
Confidence 8999999643 57888998 774 2456789999999999998766 3455566656 778766653
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKEN-HAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~-a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+++++.++|.+++++ ++..+. .+...+.+.+.-+..+..+.+++.+
T Consensus 327 --~~~~l~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 --DPEALAEAILRLLDD------PELRRRLGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred --CHHHHHHHHHHHHcC------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 789999999999998 544333 3333334444444555555555543
No 51
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.24 E-value=7.4e-09 Score=104.66 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=89.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hhhcCC
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LILKHP 333 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~lL~~~ 333 (449)
.+++..|+... ...+..++.+++.. +.+++ .+|.+. .-+.+.......++.+.+++++. .+++.+
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~-ivG~G~--------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLA-FVGDGP--------YREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEE-EEeCCh--------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 44556677652 34455567777655 34444 444331 11233333344588898999754 588889
Q ss_pred CccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHh---hhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 334 SVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGE---ELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 334 ~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~---~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++ +|.-.. ..++.||+++|+|+|+.... .....+++ . +.|..++.. +++++.++|.++++
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~~------d~~~la~~i~~ll~ 399 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTPG------DVDDCVEKLETLLA 399 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCCC------CHHHHHHHHHHHHh
Confidence 99 885443 34688999999999987643 23334454 6 778877764 78999999999999
Q ss_pred CCCchhHHHHHHHHHHHH
Q 039043 407 DDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~ 424 (449)
| .+...++.+++++..
T Consensus 400 ~--~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 400 D--PELRERMGAAAREEV 415 (465)
T ss_pred C--HHHHHHHHHHHHHHH
Confidence 8 122234455554433
No 52
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=7.2e-10 Score=98.67 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=111.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHh-cCCCeEEEeccch-hhhhhcCC
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEER-VKGRGFIHGGWVQ-QQLILKHP 333 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~~~~~~p-q~~lL~~~ 333 (449)
+.-|+|++|... .......++..+++.++.+-++++..++ -+.++..+ -..+++.+.-... ...|+..+
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p-------~l~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP-------TLKNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc-------chhHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 446999998553 3445666888888888888888885432 12233332 2245665544444 45799999
Q ss_pred CccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhH
Q 039043 334 SVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVG 413 (449)
Q Consensus 334 ~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 413 (449)
++ .|+-||. |+.|++..|+|.+++|+...|---|+..+.+ |+-..+.-. +++..+...+.++.+|
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~~~-----l~~~~~~~~~~~i~~d------ 293 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLGYH-----LKDLAKDYEILQIQKD------ 293 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-CchhhccCC-----CchHHHHHHHHHhhhC------
Confidence 99 9999886 8999999999999999999999999999998 998888765 6788888888899998
Q ss_pred HHHHHHHHHHHHHHHhc
Q 039043 414 KEIKENHAKWREFLRSE 430 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~ 430 (449)
...+++.-.-++.+-+.
T Consensus 294 ~~~rk~l~~~~~~i~dg 310 (318)
T COG3980 294 YARRKNLSFGSKLIGDG 310 (318)
T ss_pred HHHhhhhhhccceeecc
Confidence 66666555444444433
No 53
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=2.2e-08 Score=97.97 Aligned_cols=112 Identities=11% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCeEEEeccchh-hhhhcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 315 GRGFIHGGWVQQ-QLILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
.+++.+.++.++ .++++.+++ +|.- |...++.||+++|+|+|+... ...+..+++- ..|..++..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~~--- 321 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDVG--- 321 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCCC---
Confidence 357888888776 468999998 7733 334599999999999998644 3456666665 677666653
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFL-RSERLENSYLDGFVQKLH 445 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~ 445 (449)
+.+++.++|.+++++ ++..++..+-+... .+.-+....++.+++.++
T Consensus 322 ---~~~~l~~~i~~l~~~------~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 322 ---DVEAMAEYALSLLED------DELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred ---CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 789999999999988 44433333222222 333445556666666554
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.22 E-value=2.7e-08 Score=95.89 Aligned_cols=306 Identities=16% Similarity=0.110 Sum_probs=158.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc-ccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAIT-KFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.-|+......++++|.+.||+|++++...... .....+ +++..++.... . ......+.
T Consensus 9 ~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~----------~~~~~~~~--- 67 (359)
T cd03808 9 DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALG-----VKVIPIPLDRR---G----------INPFKDLK--- 67 (359)
T ss_pred chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCC-----ceEEecccccc---c----------cChHhHHH---
Confidence 46788889999999999999999999876554 234444 66666652110 0 00111111
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcC-C--CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCCC
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDF-T--HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFP 161 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~-~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (449)
....+...+++.+||+|++.. . ..+..+++..+.|.++.......... ...
T Consensus 68 --~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~ 121 (359)
T cd03808 68 --ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------------TSG 121 (359)
T ss_pred --HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------------ccc
Confidence 223566778888999998876 2 23344555466666554332211100 000
Q ss_pred CCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc-C--CCeEEeCccCCCCC
Q 039043 162 TSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF-G--KPVILSGPALPESP 238 (449)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~-~--~~~~~vGp~~~~~~ 238 (449)
.. ...+ +.... ......++.+++.+....+ ...... . .....+.|...+..
T Consensus 122 -------~~-~~~~-----------~~~~~--~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 175 (359)
T cd03808 122 -------GL-KRRL-----------YLLLE--RLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPGSGVDLD 175 (359)
T ss_pred -------hh-HHHH-----------HHHHH--HHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecCCCCChh
Confidence 00 0000 00001 1123345666665532221 111111 1 12222222221110
Q ss_pred CccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChh-HHHhcCC
Q 039043 239 RFALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEG-FEERVKG 315 (449)
Q Consensus 239 ~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~-~~~~~~~ 315 (449)
. ....... ..+++.+++..|+... ...+.+...+..+...+..+ ++.+|...... ..... .......
T Consensus 176 ~--~~~~~~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~----~~~~~~~~~~~~~ 245 (359)
T cd03808 176 R--FSPSPEP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEEN----PAAILEIEKLGLE 245 (359)
T ss_pred h--cCccccc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch----hhHHHHHHhcCCc
Confidence 0 0000000 1234467777787654 33344444444444323332 33344432211 00000 1111234
Q ss_pred CeEEEeccchh-hhhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 316 RGFIHGGWVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 316 ~~~~~~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
.++.+.++..+ .++++.+++ +|..+. .+++.||+.+|+|+|+.+.. .....+++. +.|..++..
T Consensus 246 ~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~~~---- 314 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVPPG---- 314 (359)
T ss_pred ceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEECCC----
Confidence 57887777554 478999998 776543 57899999999999986544 334555656 778766653
Q ss_pred cccHHHHHHHHHHHhcC
Q 039043 391 LFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~ 407 (449)
+++++.++|.+++++
T Consensus 315 --~~~~~~~~i~~l~~~ 329 (359)
T cd03808 315 --DAEALADAIERLIED 329 (359)
T ss_pred --CHHHHHHHHHHHHhC
Confidence 789999999999988
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.21 E-value=2.1e-08 Score=97.85 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=81.4
Q ss_pred CeEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHH---HhcCCCeEEEeccchhh---
Q 039043 256 KSLIFCAFGSECV-LNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFE---ERVKGRGFIHGGWVQQQ--- 327 (449)
Q Consensus 256 k~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~---~~~~~~~~~~~~~~pq~--- 327 (449)
++.+++..|+... ...+.+...+..+... +.+++ .+|.+.. .+.+. .....+++.+..++++.
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~~--------~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 289 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGPE--------KEELKELAKALGLDNVTFLGRVPKEELP 289 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCccc--------HHHHHHHHHHcCCCcEEEeCCCChHHHH
Confidence 4467777787754 3334444555544433 33443 3443311 11121 12334688888999865
Q ss_pred hhhcCCCccceeccCC---------chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHH
Q 039043 328 LILKHPSVGCFVTHCG---------SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG---------~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
++++.+++ +|.... .+++.||+++|+|+|+.+..+.+.. +.+. +.|..++.. +.+++.
T Consensus 290 ~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~-~~g~~~~~~------~~~~l~ 356 (394)
T cd03794 290 ELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEA-GAGLVVPPG------DPEALA 356 (394)
T ss_pred HHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccC-CcceEeCCC------CHHHHH
Confidence 47888998 764332 2347999999999999887655443 3334 667666653 789999
Q ss_pred HHHHHHhcC
Q 039043 399 KAVKAVIDD 407 (449)
Q Consensus 399 ~~i~~ll~~ 407 (449)
++|.++++|
T Consensus 357 ~~i~~~~~~ 365 (394)
T cd03794 357 AAILELLDD 365 (394)
T ss_pred HHHHHHHhC
Confidence 999999987
No 56
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.19 E-value=7.4e-08 Score=95.63 Aligned_cols=113 Identities=10% Similarity=-0.034 Sum_probs=75.0
Q ss_pred CCeEEEeccchhh---hhhcCCCccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+++++. ++|+.+++ +|. +.|+ .++.||+++|+|+|+.... .....+++. +.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCCC-
Confidence 3589999999764 57889998 764 2344 5899999999999986543 344456665 678777653
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.+++.++|.+++++ ++.++++..-+....+.-+-...++.+++.+.+
T Consensus 354 -----d~~~la~~i~~~l~~------~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 354 -----DPADWADALARLLDD------PRTRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred -----CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999998 444333333222222233444455565555543
No 57
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.19 E-value=2.8e-08 Score=98.43 Aligned_cols=80 Identities=24% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCeEEEeccchhh---hhhcCCCccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+++|+. .+|+.+++ +|. +.|. .++.||+++|+|+|+... ......+.+- ..|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~~- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDFF- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCCC-
Confidence 4689999999875 46778888 663 2333 478999999999998643 3455566655 567776654
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
++++++++|.+++++
T Consensus 352 -----d~~~la~~i~~ll~~ 366 (396)
T cd03818 352 -----DPDALAAAVIELLDD 366 (396)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 799999999999998
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.14 E-value=4.8e-08 Score=93.71 Aligned_cols=308 Identities=19% Similarity=0.151 Sum_probs=157.0
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhh
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDL 86 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (449)
-|...-+..++++|.++||+|++++........... ..+ +....++... . . .. .....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--~~~-~~~~~~~~~~-----~---~----------~~-~~~~~ 70 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGEPPFYEL--DPK-IKVIDLGDKR-----D---S----------KL-LARFK 70 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc--CCc-cceeeccccc-----c---c----------ch-hcccc
Confidence 455555778999999999999999987654111110 111 3343333100 0 0 00 00111
Q ss_pred cHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCC-ceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCCCCCc
Q 039043 87 TEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGI-KSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPTSK 164 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~gi-P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 164 (449)
....+..++++.+||+|++.. .......+...+. |++......... ..
T Consensus 71 ~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------~~--- 120 (348)
T cd03820 71 KLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDA---------------------------YK--- 120 (348)
T ss_pred chHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccc---------------------------hh---
Confidence 234567778888999999988 5344445555565 666432111100 00
Q ss_pred cccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCCCccchh
Q 039043 165 IRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPRFALEE 244 (449)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~ 244 (449)
............++.++.+++.+.... .........++..+++....... ..
T Consensus 121 --------------------~~~~~~~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~vi~~~~~~~~~---~~ 172 (348)
T cd03820 121 --------------------KRLRRLLLRRLLYRRADAVVVLTEEDR-----ALYYKKFNKNVVVIPNPLPFPPE---EP 172 (348)
T ss_pred --------------------hhhHHHHHHHHHHhcCCEEEEeCHHHH-----HHhhccCCCCeEEecCCcChhhc---cc
Confidence 000000012233455666666554332 11111223345555543322110 00
Q ss_pred cccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHHHhcCCCeEEEec
Q 039043 245 RWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFEERVKGRGFIHGG 322 (449)
Q Consensus 245 ~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ 322 (449)
. . ..+..+++..|+... ...+.+..++..+.+...++ ++.++.+.. ...+..-........++.+.+
T Consensus 173 ~-----~--~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~v~~~g 241 (348)
T cd03820 173 S-----S--DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPE----REALEALIKELGLEDRVILLG 241 (348)
T ss_pred c-----C--CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCC----HHHHHHHHHHcCCCCeEEEcC
Confidence 0 1 122245556666553 23344444555554323332 233333211 111111011112235777777
Q ss_pred cchh-hhhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhc-ceeEeeecCCCCcccHHH
Q 039043 323 WVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELK-VGVEVEKGDEDGLFTRDG 396 (449)
Q Consensus 323 ~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~~~~~~ 396 (449)
+... ..++..+++ +|.-.. .+++.||+++|+|+|+.+....+.. +.+. | .|..++. .+.++
T Consensus 242 ~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~------~~~~~ 308 (348)
T cd03820 242 FTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPN------GDVEA 308 (348)
T ss_pred CcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCC------CCHHH
Confidence 7443 478899998 776542 4689999999999998765544332 3334 4 7776665 37899
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 397 VCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 397 l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
+.++|.++++| ++.+++..+-+
T Consensus 309 ~~~~i~~ll~~------~~~~~~~~~~~ 330 (348)
T cd03820 309 LAEALLRLMED------EELRKRMGANA 330 (348)
T ss_pred HHHHHHHHHcC------HHHHHHHHHHH
Confidence 99999999998 65554444433
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.10 E-value=2.4e-08 Score=99.77 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=60.4
Q ss_pred eEEEeccchh-hhhhcCCCccceecc-----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 317 GFIHGGWVQQ-QLILKHPSVGCFVTH-----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 317 ~~~~~~~~pq-~~lL~~~~~~~~I~H-----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
++++.+.... ..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+. |.++. ..
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~--~~---- 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQ--VE---- 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEE--EC----
Confidence 4555454444 468888997 5442 34446999999999999999988888888877766 76644 32
Q ss_pred cccHHHHHHHHHHHhcC
Q 039043 391 LFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~ 407 (449)
++++|.++|.++++|
T Consensus 374 --d~~~La~~l~~ll~~ 388 (425)
T PRK05749 374 --DAEDLAKAVTYLLTD 388 (425)
T ss_pred --CHHHHHHHHHHHhcC
Confidence 789999999999998
No 60
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.09 E-value=1.9e-09 Score=105.32 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=96.1
Q ss_pred CCeEEEEEeCCcccC-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCccccCCChhHHHhcC--CCeEEEeccchh---h
Q 039043 255 SKSLIFCAFGSECVL-NKEQFQELVLGFELSGL-PFLVALKPPVGHDTIESALPEGFEERVK--GRGFIHGGWVQQ---Q 327 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~~~pq---~ 327 (449)
+++.+++++|..... ..+.+..++++++.... ++.+....... ....+-+ ...... ..++.+.+..++ .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---~~~~l~~-~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---TRPRIRE-AGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---hHHHHHH-HHHhhccCCCCEEEECCcCHHHHH
Confidence 355788888876643 35667778888775533 24444432211 0111111 111111 357777665543 3
Q ss_pred hhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+++.+++ ||+.+| |.+.||+++|+|+|+++...+ +..+.+. |++..+. -+.++|.++|.+++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~-------~~~~~i~~~i~~ll~~ 337 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVG-------TDPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecC-------CCHHHHHHHHHHHhcC
Confidence 56888999 999999 888899999999999875432 2234445 7664442 2588999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 408 DHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+..+++.+ ...-+.-.+.+.|++.+
T Consensus 338 ------~~~~~~~~------~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 338 ------EFAYSLMS------INPYGDGNASERIVEIL 362 (363)
T ss_pred ------chhhhcCC------CCCCCCCHHHHHHHHHh
Confidence 54443322 22223345566666554
No 61
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.06 E-value=4.9e-08 Score=92.58 Aligned_cols=291 Identities=17% Similarity=0.179 Sum_probs=159.7
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCcc--ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKA--ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.-|+.=+-.+.++|.++||+|.+.+.+.. .+.++..| +++..+.- .+ ......+....
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg-----~~y~~iG~---~g------------~~~~~Kl~~~~ 69 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG-----IDYIVIGK---HG------------DSLYGKLLESI 69 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC-----CCeEEEcC---CC------------CCHHHHHHHHH
Confidence 34889999999999999999999887753 35566667 88888761 01 11122222322
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCCCCCc
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGFPTSK 164 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 164 (449)
. ..-.+..++++.+||++|+-.+..+..+|..+|+|+|.+.=........ -..+|...
T Consensus 70 ~-R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------------------~Lt~Pla~ 127 (335)
T PF04007_consen 70 E-RQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDTEHAIAQN---------------------RLTLPLAD 127 (335)
T ss_pred H-HHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecCchhhccc---------------------eeehhcCC
Confidence 2 2346777888899999998668888889999999999885443211000 01111100
Q ss_pred cccCchhhchhhhhhhccCCCch--HHHHHHhhhccCCcEEE-EcCccccccchHHHhhhhcCCCeEEeCccCCCCCCcc
Q 039043 165 IRLRAHEARGLAAATVKEFGGGL--SFAKRNLLSLSECDAIG-FKTCREIEGPYCDYIGSQFGKPVILSGPALPESPRFA 241 (449)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~ 241 (449)
..+ ....+ ....+++. + ..+. .+.+.|+. ++=|+.++
T Consensus 128 ~i~---------------~P~~~~~~~~~~~G~---~-~~i~~y~G~~E~a----------------yl~~F~Pd----- 167 (335)
T PF04007_consen 128 VII---------------TPEAIPKEFLKRFGA---K-NQIRTYNGYKELA----------------YLHPFKPD----- 167 (335)
T ss_pred eeE---------------CCcccCHHHHHhcCC---c-CCEEEECCeeeEE----------------eecCCCCC-----
Confidence 000 00001 01111111 0 1122 33333222 22221111
Q ss_pred chhcccccccCCCCCeEEEEEeCCccc----CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCe
Q 039043 242 LEERWETLLGSFKSKSLIFCAFGSECV----LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRG 317 (449)
Q Consensus 242 ~~~~l~~~l~~~~~k~~v~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 317 (449)
++..+-+.. ++++.|+|-+-+..+ .....+..+++.|++.+.. ++.+..... .+.-+. .. +-
T Consensus 168 --~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~~-------~~~~~~-~~--~~ 233 (335)
T PF04007_consen 168 --PEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYED-------QRELFE-KY--GV 233 (335)
T ss_pred --hhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCcc-------hhhHHh-cc--Cc
Confidence 111112332 234577777766443 2234466788889888877 444433211 111011 10 11
Q ss_pred EEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHH
Q 039043 318 FIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGV 397 (449)
Q Consensus 318 ~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l 397 (449)
.+...-++..+||.++++ +|+-|| .+..||...|+|.|.+ +.++-..+-+.+.+. |+ +... -+++++
T Consensus 234 ~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl---l~~~-----~~~~ei 300 (335)
T PF04007_consen 234 IIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL---LYHS-----TDPDEI 300 (335)
T ss_pred cccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC---eEec-----CCHHHH
Confidence 233355666789999999 999887 7788999999999974 222322333445555 64 4443 377777
Q ss_pred HHHHHHHhc
Q 039043 398 CKAVKAVID 406 (449)
Q Consensus 398 ~~~i~~ll~ 406 (449)
.+.|.+.+.
T Consensus 301 ~~~v~~~~~ 309 (335)
T PF04007_consen 301 VEYVRKNLG 309 (335)
T ss_pred HHHHHHhhh
Confidence 776655443
No 62
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.99 E-value=2e-07 Score=92.83 Aligned_cols=94 Identities=11% Similarity=0.149 Sum_probs=63.2
Q ss_pred CeEEEe-ccchhh---hhhcCCCccceec-c---CC---chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 316 RGFIHG-GWVQQQ---LILKHPSVGCFVT-H---CG---SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 316 ~~~~~~-~~~pq~---~lL~~~~~~~~I~-H---gG---~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
+++++. .|+|.. ++|+.+++ +|. + -| -+++.||+++|+|+|+... ......+++. +.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 355544 688754 57888999 663 1 12 3479999999999998654 2455677776 788776
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHH
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDH-SEVGKEIKENHAKWR 424 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~~~a~~l~ 424 (449)
. +.++|+++|.++++|.. .+...+|++++++.+
T Consensus 366 -~------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 -G------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -C------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 57999999999998600 133355565555554
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.96 E-value=5.9e-07 Score=87.19 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=87.3
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHH---Hh-cCCCeEEEeccchh-hhh
Q 039043 257 SLIFCAFGSECV-LNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFE---ER-VKGRGFIHGGWVQQ-QLI 329 (449)
Q Consensus 257 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~---~~-~~~~~~~~~~~~pq-~~l 329 (449)
..+++..|.... ...+.+...+..+...+.++ ++.+|.+... ..+-..+. .+ ...+++.+.+|.+. ..+
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR----RFYYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc----chHHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 356666677653 34455666666665543333 3344443211 11111111 11 12357888888654 468
Q ss_pred hcCCCccceecc----CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 330 LKHPSVGCFVTH----CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 330 L~~~~~~~~I~H----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
++.+++ +|+- -|+ +++.||+++|+|+|+.... .....+.+. +.|..++.. +.+++.++|.++
T Consensus 261 l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~------~~~~l~~~i~~~ 327 (355)
T cd03819 261 YALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPPG------DAEALAQALDQI 327 (355)
T ss_pred HHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCCC------CHHHHHHHHHHH
Confidence 889998 5542 233 5999999999999986543 344455555 578777653 899999999766
Q ss_pred hc-CCCchhHHHHHHHHHHHHH
Q 039043 405 ID-DDHSEVGKEIKENHAKWRE 425 (449)
Q Consensus 405 l~-~~~~~~~~~~~~~a~~l~~ 425 (449)
+. + .+...++++++++..+
T Consensus 328 ~~~~--~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 328 LSLL--PEGRAKMFAKARMCVE 347 (355)
T ss_pred HhhC--HHHHHHHHHHHHHHHH
Confidence 65 4 1223445555555444
No 64
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.94 E-value=1.2e-06 Score=85.15 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCeEEEec-cchhh---hhhcCCCccceecc------CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 315 GRGFIHGG-WVQQQ---LILKHPSVGCFVTH------CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 315 ~~~~~~~~-~~pq~---~lL~~~~~~~~I~H------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
..++.+.. |+|+. .+++.+++ +|.- |..+++.||+++|+|+|+.+..+ ...+.+. +.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 45777664 48753 68888888 6632 33468899999999999987654 2334555 7776666
Q ss_pred ecCCCCcccHHHHHHHHHHHhcC
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.. +.+++.+++.+++++
T Consensus 318 ~~------d~~~~~~~l~~l~~~ 334 (366)
T cd03822 318 PG------DPAALAEAIRRLLAD 334 (366)
T ss_pred CC------CHHHHHHHHHHHHcC
Confidence 54 789999999999998
No 65
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.93 E-value=1.7e-06 Score=86.85 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=71.1
Q ss_pred CCeEEEeccchhhh---hhcCC----CccceeccC---Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 315 GRGFIHGGWVQQQL---ILKHP----SVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 315 ~~~~~~~~~~pq~~---lL~~~----~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
.+++.+.+++++.+ +++.+ ++ ||... |+ .++.||+++|+|+|+.... .....+.+. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 45788888877654 46655 56 88654 43 5899999999999987653 344455554 568777
Q ss_pred eecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-HHHhcCcchHHHHHHHHHH
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE-FLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~~ 444 (449)
+.. ++++++++|.++++| +..+++...-+. .+.+.-+-.+.++.+++.+
T Consensus 389 ~~~------d~~~la~~i~~ll~~------~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DVL------DLEAIASALEDALSD------SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CCC------CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 764 789999999999998 543332222221 2233334444555555543
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.93 E-value=1.3e-06 Score=86.62 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=54.9
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc---CCch-hHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH---CGSG-SLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+|+|+. .+++.+++ +|.- -|.| ++.||+++|+|+|+.+..+ ....+. . |-+. +. .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~-~~-~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMIL-LA-E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-Ccee-ec-C-
Confidence 4578888999764 57888988 7643 3444 9999999999999977643 222333 3 4332 22 2
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+.+++.+++.+++++
T Consensus 318 ----~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 ----PDVESIVRKLEEAISI 333 (398)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 3789999999999986
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.92 E-value=1.9e-06 Score=83.56 Aligned_cols=133 Identities=14% Similarity=0.047 Sum_probs=82.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hhhcCC
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSG-LPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LILKHP 333 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~lL~~~ 333 (449)
.+++..|+.. .......++.++++.. .++++. |.+.. ...+..-.......+|+.+.+|+|+. .+++.+
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~-G~g~~----~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~a 264 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIV-GEGPL----EAELEALAAALGLLDRVRFLGRLDDEEKAALLAAC 264 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEE-eCChh----HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhC
Confidence 5566677764 3345566777776665 444443 32211 11111101112235699999999974 577788
Q ss_pred Cccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 334 SVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 334 ~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
++-++-+ +.|. .++.||+++|+|+|+....+....... +. +.|...+.. +.+++.++|.++++|
T Consensus 265 d~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~~------d~~~~~~~i~~l~~~ 332 (357)
T cd03795 265 DVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPPG------DPAALAEAIRRLLED 332 (357)
T ss_pred CEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCCC------CHHHHHHHHHHHHHC
Confidence 8832223 2344 478999999999999766555443322 25 677666653 899999999999998
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.92 E-value=6.6e-07 Score=85.85 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=58.4
Q ss_pred CCeEEEeccchh-hhhhcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 315 GRGFIHGGWVQQ-QLILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq-~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
..++.+.++.+. .++++.+++ +|.- |..+++.||+++|+|+|+.... .....+++. +.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECCC---
Confidence 457888888776 478999998 6643 3346899999999999986543 556677777 888777654
Q ss_pred CcccHHHH---HHHHHHHhcC
Q 039043 390 GLFTRDGV---CKAVKAVIDD 407 (449)
Q Consensus 390 ~~~~~~~l---~~~i~~ll~~ 407 (449)
+.+.+ .+++.+++++
T Consensus 315 ---~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 315 ---DEAALAAAALALLDLLLD 332 (353)
T ss_pred ---CHHHHHHHHHHHHhccCC
Confidence 66666 6667677666
No 69
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.91 E-value=2.2e-08 Score=97.99 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=94.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccchh---
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELS-----GLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWVQQ--- 326 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~pq--- 326 (449)
+++++++++-.... .+.+..++++++.. +.++++..+.+.+ .. ..+.... ..+++.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV---VR----EPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH---HH----HHHHHHhCCCCCEEEECCCChHHH
Confidence 34666655432211 14466677776543 3455555433211 00 1111111 2347887776654
Q ss_pred hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 327 QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+++.+++ +|+..|.. +.||+++|+|+|.++..++++. +.+. |.+..+ . .++++|.+++.++++
T Consensus 269 ~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv--~-----~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 269 LNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLV--G-----TDKENITKAAKRLLT 333 (365)
T ss_pred HHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEe--C-----CCHHHHHHHHHHHHh
Confidence 467788888 99987754 7999999999999976565553 2335 777655 2 378999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 407 DDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+ ++.+++...-...+. ...+.+.+++.+.++
T Consensus 334 ~------~~~~~~~~~~~~~~g----~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 334 D------PDEYKKMSNASNPYG----DGEASERIVEELLNH 364 (365)
T ss_pred C------hHHHHHhhhcCCCCc----CchHHHHHHHHHHhh
Confidence 8 766655443322222 234556666655543
No 70
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.91 E-value=3e-06 Score=84.39 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=92.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCC--CCE-EEEEcCCCCCCccccCCChhHHH---hcCCCeEEEeccchhh---h
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSG--LPF-LVALKPPVGHDTIESALPEGFEE---RVKGRGFIHGGWVQQQ---L 328 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~-i~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~~~pq~---~ 328 (449)
.+++..|+.. ..+.+..++++++... .++ +..+|.+. ..+.+.. ...-+++.+.+|+|+. +
T Consensus 230 ~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--------~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 230 KIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG--------GKARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred EEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh--------hHHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 5556677775 3344555555554332 122 33444431 1122221 1222479999999864 5
Q ss_pred hhcCCCccceeccCCc------hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 329 ILKHPSVGCFVTHCGS------GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
+++.+++.++.+..+. +.+.|++.+|+|+|+....+.. ....++ +.|..++.. +.++++++|.
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~~------d~~~la~~i~ 368 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEPE------SVEALVAAIA 368 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCCC------CHHHHHHHHH
Confidence 7888998444444332 2368999999999998754321 111222 567667654 7899999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 403 AVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 403 ~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
++++| .+....+++++++.. .+.-+..+.++.+++.+++.
T Consensus 369 ~l~~~--~~~~~~~~~~a~~~~---~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 369 ALARQ--ALLRPKLGTVAREYA---ERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHhC--HHHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHH
Confidence 99988 122234444444433 22334555666666665543
No 71
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.91 E-value=1e-06 Score=85.77 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=74.0
Q ss_pred CeEEEeccch-hh---hhhcCCCccceeccC----CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 316 RGFIHGGWVQ-QQ---LILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 316 ~~~~~~~~~p-q~---~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.++.+.+|++ +. .+++.+++ +|.-. ..+++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC--
Confidence 4788889988 33 57888998 88753 347899999999999986543 233344444 56766654
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKE-IKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~-~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.+.+++.+++.+++++ ++ +.+-.+...+.....-+.++.++++++.+++
T Consensus 315 ----~~~~~~~~~l~~l~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 ----GDPEDLAEGIEWLLAD------PDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ----CCHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 3789999999999988 44 2222223333333344556667777766554
No 72
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.86 E-value=1.1e-07 Score=90.96 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=103.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCccccCCChhHHHhcCC-CeEEEeccchhhhhhcCC
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLP-FLVALKPPVGHDTIESALPEGFEERVKG-RGFIHGGWVQQQLILKHP 333 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~~~~pq~~lL~~~ 333 (449)
+++|.+--||..+.-...+-.++.+.+.+..+ .++.+..... . +.+...... ..+.+.+ .-.+++..+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~-------~-~~i~~~~~~~~~~~~~~--~~~~~m~~a 236 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK-------G-KDLKEIYGDISEFEISY--DTHKALLEA 236 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc-------H-HHHHHHHhcCCCcEEec--cHHHHHHhh
Confidence 35899999998864445555455554433221 3333322211 1 122221111 1222222 335799999
Q ss_pred CccceeccCCchhHHHHHhhCCcEecccc--ccchhhHHHHHH---hhhcceeEe-------------eecCCCCcccHH
Q 039043 334 SVGCFVTHCGSGSLSEAMVNECQLVLLPN--VGDQIINARLMG---EELKVGVEV-------------EKGDEDGLFTRD 395 (449)
Q Consensus 334 ~~~~~I~HgG~gs~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~~G~G~~~-------------~~~~~~~~~~~~ 395 (449)
++ +|+-+|..|+ |++.+|+|||+ ++ ..-|..||+++. .. |+.-.+ ..++ .|++
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~~----~t~~ 307 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQEF----VTVE 307 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhccc----CCHH
Confidence 99 9999999999 99999999988 55 456899999999 55 665544 3344 8999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 039043 396 GVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 396 ~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 442 (449)
.|.+++.+ +.. +++++..+++.+.+. .+++.++++.+.+
T Consensus 308 ~la~~i~~-~~~------~~~~~~~~~l~~~l~-~~a~~~~A~~i~~ 346 (347)
T PRK14089 308 NLLKAYKE-MDR------EKFFKKSKELREYLK-HGSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHH-HHH------HHHHHHHHHHHHHhc-CCHHHHHHHHHhc
Confidence 99999988 344 678888888888885 3666666665544
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.86 E-value=1.7e-06 Score=83.86 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc----------CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH----------CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
.+++.+.+++|+. .+++.+++ +|.- |.-+++.||+++|+|+|+.+... ....+++. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCC-CceE
Confidence 4689999999754 57778888 6662 33478999999999999876532 22344444 4776
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.++.. +.+++.++|.+++++
T Consensus 308 ~~~~~------~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPPG------DPEALADAIERLLDD 327 (355)
T ss_pred EeCCC------CHHHHHHHHHHHHhC
Confidence 66643 889999999999998
No 74
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.82 E-value=3.6e-06 Score=81.60 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred CCeEEEeccchhh---hhhcCCCccceeccC---C-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+|+++. .++..+++ +|.-. | .+++.||+++|+|+|+.+.. .....+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~-~-~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIE-Y-GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhh-c-CceEEeCC--
Confidence 4689999999954 46888888 65432 2 46889999999999997643 2333333 3 56654442
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
+.+++.++|.+++++
T Consensus 331 -----~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 -----DVDALAAALRRALEL 345 (375)
T ss_pred -----ChHHHHHHHHHHHhC
Confidence 449999999999998
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.82 E-value=1.5e-06 Score=84.95 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=62.1
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc----------CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH----------CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H----------gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
..++.+.+++|+. .+++.+++ +|.. |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 4688898999864 46888998 6642 2347899999999999987764 355566666 7887
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.++.. +.+++.++|.+++++
T Consensus 317 ~~~~~------d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPEG------DVAALAAALGRLLAD 336 (367)
T ss_pred EECCC------CHHHHHHHHHHHHcC
Confidence 77653 789999999999998
No 76
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.80 E-value=5.8e-06 Score=88.45 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=72.6
Q ss_pred CCeEEEeccchhhh---hhcCC----Cccceecc---CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 315 GRGFIHGGWVQQQL---ILKHP----SVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 315 ~~~~~~~~~~pq~~---lL~~~----~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
.++|.+.+++++.+ ++..+ ++ ||.- =|+ .++.||+++|+|+|+....+ ....+++. .-|..+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEE
Confidence 45788888887754 56555 35 7775 354 58889999999999986543 23344444 567777
Q ss_pred eecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+.. ++++|+++|.+++++ .+...+|.+++.+..+ .-+-.+.++.+++.+..+
T Consensus 620 dP~------D~eaLA~AL~~LL~D--pelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 620 DPH------DQQAIADALLKLVAD--KQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIASC 671 (1050)
T ss_pred CCC------CHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHH
Confidence 764 789999999999998 1222334444443322 333444556666555543
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.80 E-value=7.1e-07 Score=87.10 Aligned_cols=133 Identities=18% Similarity=0.124 Sum_probs=81.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchh-----hhhhc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQ-----QLILK 331 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq-----~~lL~ 331 (449)
.+++..|.........+..+++++.....++ ++.+|.+.. ...+-.-.......+++.+.+|+++ .+.++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~----~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~ 256 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD----FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK 256 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc----HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh
Confidence 5556677665323345666777776554332 334444321 1111111111122468999998754 23455
Q ss_pred CCCccceecc----CCchhHHHHHhhCCcEeccc-cccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 332 HPSVGCFVTH----CGSGSLSEAMVNECQLVLLP-NVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 332 ~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
.+++ +|.. |-..++.||+++|+|+|+.- ..+ ....+++. ..|..++.. +.+++.++|.++++
T Consensus 257 ~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~~------d~~~la~~i~~l~~ 323 (359)
T PRK09922 257 NVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTPG------NIDEFVGKLNKVIS 323 (359)
T ss_pred cCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECCC------CHHHHHHHHHHHHh
Confidence 6777 6653 22479999999999999875 332 22355555 668777653 89999999999999
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
|
T Consensus 324 ~ 324 (359)
T PRK09922 324 G 324 (359)
T ss_pred C
Confidence 8
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.78 E-value=4.1e-06 Score=80.91 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=68.3
Q ss_pred CeEEEeccchh-hhhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 316 RGFIHGGWVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 316 ~~~~~~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
.++.+.+..+. .++++.+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 46666665554 478999999 886544 3799999999999998543 334444444 3444444
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQK 443 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 443 (449)
-+.+++.++|.+++++. +.+++..+...+.+.+.-+-.+.++.+++.
T Consensus 317 -~~~~~l~~~i~~l~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 -GDPEALAEAIEALLADP-----ALRQALGEAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred -CCHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 37899999999999981 223333333344444444444555555443
No 79
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.78 E-value=2.3e-06 Score=83.93 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred CeEEEeccchh-hhhhcCCCccceec--c--CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 316 RGFIHGGWVQQ-QLILKHPSVGCFVT--H--CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 316 ~~~~~~~~~pq-~~lL~~~~~~~~I~--H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
.++.+.++..+ .++++.+++ +|. + |-.+++.||+++|+|+|+.... .+...+++- ..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~~---- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPPG---- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCCC----
Confidence 45666665544 478999999 763 2 3346899999999999996653 344455555 567777653
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENH-AKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.+++.++|.+++++ ++.++.. ++-.+.+.+.-+....++++++..++
T Consensus 324 --d~~~la~~i~~l~~~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 --DAVALARALQPYVSD------PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred --CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999988 4433322 22222333344555566666665544
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.73 E-value=2e-06 Score=83.54 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=71.7
Q ss_pred CCeEEEeccchh-hhhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 315 GRGFIHGGWVQQ-QLILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq-~~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
.+++.+.++..+ .++++.+++ +|.-.. .+++.||+++|+|+|+. |...+...+++. |.. +..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~--~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLI--VPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceE--eCC----
Confidence 357888888765 478999998 665432 46889999999999974 444555556654 543 443
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
-+.+++.+++.+++++. +.+++....-++.+.+.-+-...++.+.+.+
T Consensus 311 --~~~~~~~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 311 --SDPEALANKIDEILKMS-----GEERDIIGARRERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred --CCHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 37889999999998531 4555544444444444444455555555543
No 81
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.72 E-value=1.9e-05 Score=77.96 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=58.0
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc---CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+++.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-..+ ....+.+. +.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC---
Confidence 4689999999875 57888898 7643 22 257889999999999975432 33445555 5675543
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+.+++.++|.+++++
T Consensus 349 ----~~~~~~a~~i~~l~~~ 364 (392)
T cd03805 349 ----PTPEEFAEAMLKLAND 364 (392)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 3688999999999998
No 82
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.67 E-value=7.4e-08 Score=92.84 Aligned_cols=260 Identities=16% Similarity=0.116 Sum_probs=130.2
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEE--cC--CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCC
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFF--DF--THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLR 155 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~--D~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (449)
.......+...+.+.+++.+||+||+ |. +.++..+|..++||++-+....-.. +..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~-------------------d~~- 107 (346)
T PF02350_consen 48 MAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG-------------------DRT- 107 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S--------------------TT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc-------------------ccC-
Confidence 33444456778899999999998875 65 6777899999999987652221000 000
Q ss_pred CCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh-hc-CCCeEEeCcc
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS-QF-GKPVILSGPA 233 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~-~~-~~~~~~vGp~ 233 (449)
.+.|. ...|. ..-+.+++.++.+-. +.+.... .. +.+++.+|..
T Consensus 108 --~g~~d--------------------------e~~R~-~i~~la~lhf~~t~~-----~~~~L~~~G~~~~rI~~vG~~ 153 (346)
T PF02350_consen 108 --EGMPD--------------------------EINRH-AIDKLAHLHFAPTEE-----ARERLLQEGEPPERIFVVGNP 153 (346)
T ss_dssp --SSTTH--------------------------HHHHH-HHHHH-SEEEESSHH-----HHHHHHHTT--GGGEEE---H
T ss_pred --CCCch--------------------------hhhhh-hhhhhhhhhccCCHH-----HHHHHHhcCCCCCeEEEEChH
Confidence 00110 00000 001123444444321 1111211 11 2357777754
Q ss_pred CCCCCCc---cchhcc--cccccCCCCCeEEEEEeCCcccCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCcccc
Q 039043 234 LPESPRF---ALEERW--ETLLGSFKSKSLIFCAFGSECVLN-K---EQFQELVLGFELS-GLPFLVALKPPVGHDTIES 303 (449)
Q Consensus 234 ~~~~~~~---~~~~~l--~~~l~~~~~k~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~ 303 (449)
..+.-.. ....+. ...+.. .+++.++|++=...... + +.+..++.++... +.++||.++..+. ..
T Consensus 154 ~~D~l~~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~---~~- 228 (346)
T PF02350_consen 154 GIDALLQNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR---GS- 228 (346)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH---HH-
T ss_pred HHHHHHHhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch---HH-
Confidence 3221000 011111 011112 55779999985555544 3 4566667777655 7778888764311 01
Q ss_pred CCChhHHHhcCC-CeEEEeccchh---hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcc
Q 039043 304 ALPEGFEERVKG-RGFIHGGWVQQ---QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKV 379 (449)
Q Consensus 304 ~lp~~~~~~~~~-~~~~~~~~~pq---~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 379 (449)
..+...... +++.+...+++ ..+|+++++ +|+..| |-..||.++|||+|.+=..++.+.- ... |.
T Consensus 229 ---~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~ 297 (346)
T PF02350_consen 229 ---DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQEG----RER-GS 297 (346)
T ss_dssp ---HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HHH----HHT-TS
T ss_pred ---HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cc
Confidence 112211111 38888777654 578899999 999999 5555999999999999333333222 112 44
Q ss_pred eeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 039043 380 GVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAK 422 (449)
Q Consensus 380 G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~ 422 (449)
.+. -. .++++|.+++++++++ .....+.+.
T Consensus 298 nvl--v~-----~~~~~I~~ai~~~l~~------~~~~~~~~~ 327 (346)
T PF02350_consen 298 NVL--VG-----TDPEAIIQAIEKALSD------KDFYRKLKN 327 (346)
T ss_dssp EEE--ET-----SSHHHHHHHHHHHHH-------HHHHHHHHC
T ss_pred eEE--eC-----CCHHHHHHHHHHHHhC------hHHHHhhcc
Confidence 444 33 5899999999999987 555555444
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.67 E-value=3.2e-06 Score=82.13 Aligned_cols=133 Identities=13% Similarity=0.020 Sum_probs=77.3
Q ss_pred eEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchh-hhhhcCC
Q 039043 257 SLIFCAFGSECV-LNKEQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQ-QLILKHP 333 (449)
Q Consensus 257 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq-~~lL~~~ 333 (449)
..+.+..|+... ...+.+...+..+.+.+.++ ++.+|.+.. ...+-..........++.+.++..+ .+++..+
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 267 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL----EEEIKKKVKELGLEDKVIFLGVRNDVPELLQAM 267 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch----HHHHHHHHHhcCCCCcEEEecccCCHHHHHHhc
Confidence 356666777653 33455555555554433333 223343211 1111111111122357888787555 4789999
Q ss_pred Cccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 334 SVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 334 ~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
++ +|+- |-.+++.||+++|+|+|+....+ ....+++ +.|..+. . -++++++++|.+++++
T Consensus 268 di--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~-~-----~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 268 DV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL-D-----ESPEIWAEEILKLKSE 331 (358)
T ss_pred CE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-C-----CCHHHHHHHHHHHHhC
Confidence 98 7654 34578999999999999865543 2233333 4453333 3 3689999999999998
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.65 E-value=1.1e-05 Score=79.76 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=72.8
Q ss_pred CCCeEEEeccchhh-hhhcCCCcccee--cc--CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 314 KGRGFIHGGWVQQQ-LILKHPSVGCFV--TH--CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 314 ~~~~~~~~~~~pq~-~lL~~~~~~~~I--~H--gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
...++.+.+++++. ..++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-C-
Confidence 34689898999874 68899999 66 32 455 36999999999999988643321 1234 6676664 3
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-HHHHhcCcchHHHHHHHHHHH
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR-EFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~-~~~~~~~~~~~~~~~~~~~~~ 445 (449)
+++++.++|.++++| ++.+++...-+ +.+.+.-+-.+.++.+.+.+.
T Consensus 348 -----~~~~la~ai~~ll~~------~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 348 -----DPADFAAAILALLAN------PAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred -----CHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 789999999999998 54433322222 223333445556666655543
No 85
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.64 E-value=9.1e-07 Score=86.18 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCeEEEEEeCCcc--c-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcC-CCeEEEeccch---hh
Q 039043 255 SKSLIFCAFGSEC--V-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVK-GRGFIHGGWVQ---QQ 327 (449)
Q Consensus 255 ~k~~v~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~p---q~ 327 (449)
+++.++|++=... . ...+.+..+++++...+.++++....... ....+-+.+..... .+++.+.+.++ ..
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---GSRIINEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---CchHHHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 3458888885443 2 44578999999998877666666533211 00011111221111 35788777554 45
Q ss_pred hhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
.+++++++ +||-++.|. .||.+.|||+|.+- +.+ ...+. |-.+. .-. .++++|.+++.++++
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~-g~nvl-~vg-----~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLR-ADSVI-DVD-----PDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhh-cCeEE-EeC-----CCHHHHHHHHHHHhC
Confidence 78899999 999886655 99999999999774 211 11123 43322 123 488999999999544
No 86
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.63 E-value=6.4e-06 Score=82.94 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=106.1
Q ss_pred cCCCeEEeC-ccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHH--hC--CCCEEEEEcCCCC
Q 039043 223 FGKPVILSG-PALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFE--LS--GLPFLVALKPPVG 297 (449)
Q Consensus 223 ~~~~~~~vG-p~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~ 297 (449)
.+-++.||| |+....+......+..+-+.-.+++++|-+-.||-.+-=...+-.++++.+ .. +.++++.......
T Consensus 379 ~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~ 458 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPKY 458 (608)
T ss_pred cCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchhh
Confidence 456799999 554432212222333333444446679999999877533344445555554 33 3345443322110
Q ss_pred CCccccCCChhHHHhcCCC---eEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccc-cccchhhHHHHH
Q 039043 298 HDTIESALPEGFEERVKGR---GFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLP-NVGDQIINARLM 373 (449)
Q Consensus 298 ~~~~~~~lp~~~~~~~~~~---~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v 373 (449)
.+-+....... .+.+..--...++++.|++ .+.-+|- .+.|++..|+||+++= ...=-...++++
T Consensus 459 --------~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~L 527 (608)
T PRK01021 459 --------DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYI 527 (608)
T ss_pred --------HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHH
Confidence 01111111111 1122110012589999999 8887775 5679999999998842 222223445555
Q ss_pred Hh-----------hhccee--Eee--ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHH
Q 039043 374 GE-----------ELKVGV--EVE--KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLD 438 (449)
Q Consensus 374 ~~-----------~~G~G~--~~~--~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 438 (449)
.+ .+|=.+ .+- +++ .|++.|.+++ ++|.| ++.-+++++..+++.+.+ +++..+.+
T Consensus 528 vki~i~yIsLpNIIagr~VvPEllqgQ~~----~tpe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~L---g~~~~~~~ 597 (608)
T PRK01021 528 FKIILPAYSLPNIILGSTIFPEFIGGKKD----FQPEEVAAAL-DILKT--SQSKEKQKDACRDLYQAM---NESASTMK 597 (608)
T ss_pred HhccCCeeehhHHhcCCCcchhhcCCccc----CCHHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHh---cCCCCCHH
Confidence 54 112121 222 233 7999999997 77877 122234555555555544 45555666
Q ss_pred HHHHHHHh
Q 039043 439 GFVQKLHG 446 (449)
Q Consensus 439 ~~~~~~~~ 446 (449)
|.+..+-+
T Consensus 598 ~~~~~~~~ 605 (608)
T PRK01021 598 ECLSLIFE 605 (608)
T ss_pred HHHHHHHh
Confidence 66555443
No 87
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.63 E-value=4.6e-05 Score=74.07 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=83.1
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCccccCCChhHH-HhcCCCeEEEeccchhhh---hhcCCC
Q 039043 260 FCAFGSECVLNKEQFQELVLGFELSGLP-FLVALKPPVGHDTIESALPEGFE-ERVKGRGFIHGGWVQQQL---ILKHPS 334 (449)
Q Consensus 260 ~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~-~~~~~~~~~~~~~~pq~~---lL~~~~ 334 (449)
++..|+... .+.+..++.+++....+ -++.+|.+.. ...+-..+. .....+++.+.+++++.+ ++..++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADH----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCC----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 345677653 34455566666655422 2334444321 111111111 112346899999998864 666677
Q ss_pred ccceeccC----Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCC
Q 039043 335 VGCFVTHC----GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDH 409 (449)
Q Consensus 335 ~~~~I~Hg----G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 409 (449)
+ ++.+. |. +++.||+++|+|+|+...... ...+++. |. ..+.. +. +.++|.+++++
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~-g~--~~~~~------~~--l~~~i~~l~~~-- 330 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDK-AI--YFKVG------DD--LASLLEELEAD-- 330 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCC-ee--EecCc------hH--HHHHHHHHHhC--
Confidence 7 65543 33 478999999999998765421 1122222 32 23332 22 99999999998
Q ss_pred chhHHHHHHHHHHHH-HHHHhcCcchHHHHHHHHHH
Q 039043 410 SEVGKEIKENHAKWR-EFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 410 ~~~~~~~~~~a~~l~-~~~~~~~~~~~~~~~~~~~~ 444 (449)
++..++..+-+ +.+.+.-+-...++.+++.+
T Consensus 331 ----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 331 ----PEEVSAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred ----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 43333322222 22233344555666666543
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=4.2e-05 Score=73.16 Aligned_cols=302 Identities=16% Similarity=0.136 Sum_probs=165.2
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCEEEEEc-CCccccccCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 5 FAMGHLTPFLHIANKLAER--GHRISFLL-PAKAITKFEPS-NLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~r--Gh~Vt~~~-~~~~~~~~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
-+.|-++-..+|.++|+++ +..+++-+ ++...+.+++. |. . +....+|+ .
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~--~-v~h~YlP~----D------------------- 110 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD--S-VIHQYLPL----D------------------- 110 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC--C-eEEEecCc----C-------------------
Confidence 4678899999999999998 88877777 55555555443 31 1 44444441 0
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEE-EcC-CCCh-HHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVF-FDF-THWL-PPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPP 157 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI-~D~-~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (449)
....+...++.++||++| ++. .|.. ..-++..|+|.+.+..--. .
T Consensus 111 ------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-~------------------------- 158 (419)
T COG1519 111 ------LPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-D------------------------- 158 (419)
T ss_pred ------chHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-h-------------------------
Confidence 123566678888999765 677 5554 4566788999997622100 0
Q ss_pred CCCCCCccccCchhhchhhhhhhccCCCchHHHHHHh-hhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCC
Q 039043 158 QGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNL-LSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPE 236 (449)
Q Consensus 158 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~ 236 (449)
++.. ++..+.++. ..+.+.++++..+-.+- +.+...-.+++.-.|.+-..
T Consensus 159 ---------------rS~~---------~y~k~~~~~~~~~~~i~li~aQse~D~-----~Rf~~LGa~~v~v~GNlKfd 209 (419)
T COG1519 159 ---------------RSFA---------RYAKLKFLARLLFKNIDLILAQSEEDA-----QRFRSLGAKPVVVTGNLKFD 209 (419)
T ss_pred ---------------hhhH---------HHHHHHHHHHHHHHhcceeeecCHHHH-----HHHHhcCCcceEEecceeec
Confidence 1111 111111111 12334445555442211 12222222347777776443
Q ss_pred CC-Cccchh---cccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCC-CEEEEEcCCCCCC----cc--ccCC
Q 039043 237 SP-RFALEE---RWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGL-PFLVALKPPVGHD----TI--ESAL 305 (449)
Q Consensus 237 ~~-~~~~~~---~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~----~~--~~~l 305 (449)
.. ...++. .+...+... + .+.|..+| ..-+.+.+-....++.+... ..++.+..+...- +. ...+
T Consensus 210 ~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl 285 (419)
T COG1519 210 IEPPPQLAAELAALRRQLGGH--R-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGL 285 (419)
T ss_pred CCCChhhHHHHHHHHHhcCCC--C-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCC
Confidence 21 111222 233333332 2 45555555 33444545556666654332 2233333321100 00 0000
Q ss_pred ChhHHHhc----CCCeEEEeccchh-hhhhcCCCc---cc-eeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhh
Q 039043 306 PEGFEERV----KGRGFIHGGWVQQ-QLILKHPSV---GC-FVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEE 376 (449)
Q Consensus 306 p~~~~~~~----~~~~~~~~~~~pq-~~lL~~~~~---~~-~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~ 376 (449)
.-....+. ...++++.+-+-- ..++.-+++ ++ ++-+||+| ..|++++|+|+|.=|+...|.+.++++.+.
T Consensus 286 ~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ 364 (419)
T COG1519 286 SVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA 364 (419)
T ss_pred eEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc
Confidence 00000000 1235666665543 345555554 11 34589987 679999999999999999999999999999
Q ss_pred hcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 377 LKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 377 ~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
|.|+.++. .+.|.+++..+++|
T Consensus 365 -ga~~~v~~--------~~~l~~~v~~l~~~ 386 (419)
T COG1519 365 -GAGLQVED--------ADLLAKAVELLLAD 386 (419)
T ss_pred -CCeEEECC--------HHHHHHHHHHhcCC
Confidence 99988874 46788888888887
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.61 E-value=1.3e-05 Score=77.79 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCCeEEEeccchhh---hhhcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeec
Q 039043 314 KGRGFIHGGWVQQQ---LILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 314 ~~~~~~~~~~~pq~---~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
...++.+.+++|+. ++++.+++ +|.- |..+++.||+++|+|+|+..... ....+.+. |..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~---~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDA---ALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCc---eeeeCC-
Confidence 35689999999875 57888888 6543 33468999999999999865422 11122222 334444
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 039043 387 DEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGF 440 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 440 (449)
-+.+++.++|.++++| ++.+.+..+-+......-+-.+.++.+
T Consensus 321 -----~~~~~~~~~i~~l~~~------~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 321 -----LDPEALAAAIERLLED------PALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred -----CCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3789999999999998 666555554444433333344444443
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=1.9e-05 Score=82.38 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCeEEEeccchhh-hhhcCCCccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 315 GRGFIHGGWVQQQ-LILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq~-~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
.++|.+.+|.++. .+|+.+++ ||. +.|+ +++.||+.+|+|+|+.... .....+++- ..|..++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCC--
Confidence 4688888998764 68999998 765 5565 6889999999999997653 344456654 5688887665
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
.+++++.+++.+++.+. ...+.+++++++.. .+.-+-...++.+++..
T Consensus 644 --~~~~~La~aL~~ll~~l--~~~~~l~~~ar~~a---~~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 644 --VTAPDVAEALARIHDMC--AADPGIARKAADWA---SARFSLNQMIASTVRCY 691 (694)
T ss_pred --CChHHHHHHHHHHHhCh--hccHHHHHHHHHHH---HHhCCHHHHHHHHHHHh
Confidence 56667777766655420 00066666554443 23334445555555443
No 91
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.55 E-value=5.1e-05 Score=72.90 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=74.7
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc--CCCeEEEeccchhh---hhhcCCC
Q 039043 260 FCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV--KGRGFIHGGWVQQQ---LILKHPS 334 (449)
Q Consensus 260 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~~~pq~---~lL~~~~ 334 (449)
.+..|... ..+....++++++..+.++++. |.+... ..+ ....... ..+++.+.+++++. .+++.++
T Consensus 174 i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~-G~~~~~----~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 174 LLFLGRIS--PEKGPHLAIRAARRAGIPLKLA-GPVSDP----DYF-YREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred EEEEEeec--cccCHHHHHHHHHhcCCeEEEE-eCCCCH----HHH-HHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 34456653 2344455667777777766554 333110 000 0111111 24689999999875 4688888
Q ss_pred ccceec----cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 335 VGCFVT----HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 335 ~~~~I~----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+ ++. +-|+ .++.||+++|+|+|+.... .....+++. ..|..++ ..+++.++|.++++.
T Consensus 246 ~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~--------~~~~l~~~l~~l~~~ 308 (335)
T cd03802 246 A--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD--------SVEELAAAVARADRL 308 (335)
T ss_pred E--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC--------CHHHHHHHHHHHhcc
Confidence 8 553 2344 4799999999999987653 233344432 3564432 278999999998765
No 92
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.54 E-value=4.7e-07 Score=72.92 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=79.2
Q ss_pred eEEEEEeCCcccCCH---HHHHHHHHHHHhCCCC-EEEEEcCCCCCCccccCCChhHHH--hcCCCeEEEeccchh-hhh
Q 039043 257 SLIFCAFGSECVLNK---EQFQELVLGFELSGLP-FLVALKPPVGHDTIESALPEGFEE--RVKGRGFIHGGWVQQ-QLI 329 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~---~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~lp~~~~~--~~~~~~~~~~~~~pq-~~l 329 (449)
..+|||-||....+- -.-++.+..|.+.|.. .++.+|.+..- .++.... .+.+=.+...+|-|- .+-
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~------~~d~~~~~~k~~gl~id~y~f~psl~e~ 77 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF------FGDPIDLIRKNGGLTIDGYDFSPSLTED 77 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC------CCCHHHhhcccCCeEEEEEecCccHHHH
Confidence 389999999873111 1123355667778864 77778776321 1111111 122224455566776 567
Q ss_pred hcCCCccceeccCCchhHHHHHhhCCcEecccc----ccchhhHHHHHHhhhcce
Q 039043 330 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN----VGDQIINARLMGEELKVG 380 (449)
Q Consensus 330 L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G 380 (449)
.+.+++ +|.|+|+||++|.|..|+|.|+++. ...|-.-|..+++. |-=
T Consensus 78 I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL 129 (170)
T KOG3349|consen 78 IRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYL 129 (170)
T ss_pred HhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcE
Confidence 777999 9999999999999999999999996 46899999999987 643
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.49 E-value=1.2e-05 Score=77.53 Aligned_cols=187 Identities=17% Similarity=0.093 Sum_probs=96.9
Q ss_pred hcCCCeEEeC-ccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHH---HhC--CCCEEEEEcCC
Q 039043 222 QFGKPVILSG-PALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGF---ELS--GLPFLVALKPP 295 (449)
Q Consensus 222 ~~~~~~~~vG-p~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al---~~~--~~~~i~~~~~~ 295 (449)
..+-++.||| |+....+....+....+.+ -.+++++|-+--||-..-=...+-.++.+. .+. +.++++.+...
T Consensus 150 ~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~ 228 (373)
T PF02684_consen 150 KHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE 228 (373)
T ss_pred ccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH
Confidence 3445799999 5554432222233333333 334577999999987752233334444443 333 33455444322
Q ss_pred CCCCccccCCChhHHHhcCCCeEEEec-cchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccc-cccchhhHHHHH
Q 039043 296 VGHDTIESALPEGFEERVKGRGFIHGG-WVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLP-NVGDQIINARLM 373 (449)
Q Consensus 296 ~~~~~~~~~lp~~~~~~~~~~~~~~~~-~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v 373 (449)
.. ..+-...... ...++.+.- .-.-.+++..+++ .+.-.| ..+.|+..+|+|||++= ...=-...|+++
T Consensus 229 ~~-----~~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~l 299 (373)
T PF02684_consen 229 VH-----EELIEEILAE-YPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRL 299 (373)
T ss_pred HH-----HHHHHHHHHh-hCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHh
Confidence 11 0000001111 111222211 1233578888888 666666 46789999999998753 222233445554
Q ss_pred Hhhh-----------cceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 374 GEEL-----------KVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 374 ~~~~-----------G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
.+.= .+-..+-+++ .|++.|.+++.++|+| ++.++..+...+.++
T Consensus 300 vk~~~isL~Niia~~~v~PEliQ~~----~~~~~i~~~~~~ll~~------~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 300 VKVKYISLPNIIAGREVVPELIQED----ATPENIAAELLELLEN------PEKRKKQKELFREIR 355 (373)
T ss_pred hcCCEeechhhhcCCCcchhhhccc----CCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHH
Confidence 3320 1112222334 8999999999999999 544444444443333
No 94
>PLN02275 transferase, transferring glycosyl groups
Probab=98.48 E-value=0.00011 Score=71.92 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=53.0
Q ss_pred CeEEEec-cchhhh---hhcCCCccceec----c--CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 316 RGFIHGG-WVQQQL---ILKHPSVGCFVT----H--CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 316 ~~~~~~~-~~pq~~---lL~~~~~~~~I~----H--gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
+|+++.. |+|+.+ +|+.+|+ +|. . -| -+++.||+++|+|+|+... ..+...+++- +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566544 787654 5889999 773 1 12 2579999999999999653 2356667666 6787753
Q ss_pred ecCCCCcccHHHHHHHHHHHh
Q 039043 385 KGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll 405 (449)
++++++++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 3688999998875
No 95
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.46 E-value=7.7e-05 Score=73.45 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=92.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhHHHh-----cCCCeEEE-eccchhh--
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGFEER-----VKGRGFIH-GGWVQQQ-- 327 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~-~~~~pq~-- 327 (449)
++++..|.... .+.+..++++++.. +.++++..+.... ..+-+.+... ....+++. ..++++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT-----PEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc-----HHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 45556676552 34455666666544 4455554433211 1111111111 11234543 4567653
Q ss_pred -hhhcCCCccceecc---CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 328 -LILKHPSVGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 328 -~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
+++..+++ +|.- -| ..++.||+++|+|+|+... ......+++. +.|..++..+.+..-..+++.++|.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCCCCCcccchHHHHHHHHH
Confidence 57888998 7753 23 3577999999999998654 3455566666 6788877653000011289999999
Q ss_pred HHhcCCCchhHHHHHHHHHHH-HHHHHhcCcchHHHHHHHHHHHh
Q 039043 403 AVIDDDHSEVGKEIKENHAKW-REFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 403 ~ll~~~~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++++| ++.+++..+- ++.+.+.-+-...++.+++.+++
T Consensus 348 ~l~~~------~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 348 ILLAD------PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99998 4443332222 22233334455566666666554
No 96
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=2.7e-05 Score=73.61 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=115.9
Q ss_pred CCeEEeC-ccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHH---HHh--CCCCEEEEEcCCCCC
Q 039043 225 KPVILSG-PALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLG---FEL--SGLPFLVALKPPVGH 298 (449)
Q Consensus 225 ~~~~~vG-p~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~a---l~~--~~~~~i~~~~~~~~~ 298 (449)
-..+||| |+....+-.+.++.+.+-+.-..+++++.+-.||-.+-=...+..+..+ ++. .+.+|++-+....
T Consensus 156 ~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-- 233 (381)
T COG0763 156 LPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-- 233 (381)
T ss_pred CCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH--
Confidence 3489999 4544433333334455555555667799999999875222333333333 332 2345665543321
Q ss_pred CccccCCChhHHHh-cCCCeEEEeccc-hh--hhhhcCCCccceeccCCchhHHHHHhhCCcEeccc-cccchhhHHHHH
Q 039043 299 DTIESALPEGFEER-VKGRGFIHGGWV-QQ--QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLP-NVGDQIINARLM 373 (449)
Q Consensus 299 ~~~~~~lp~~~~~~-~~~~~~~~~~~~-pq--~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P-~~~DQ~~na~~v 373 (449)
. ..+... .+.......-++ ++ .+++..||+ .+.-+|- -+.|+..+|+|||+.= ...=-...|++.
T Consensus 234 ---~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~l 303 (381)
T COG0763 234 ---Y----RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRL 303 (381)
T ss_pred ---H----HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHh
Confidence 0 111111 111110111122 22 257778888 7777764 4679999999998742 111112334443
Q ss_pred Hhhhc-----------ceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 039043 374 GEELK-----------VGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 374 ~~~~G-----------~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 442 (449)
.+.+= +...+-.++ .+++.|++++.+++.| ++.-..+++....|...++..+.+..+++.+++
T Consensus 304 vk~~yisLpNIi~~~~ivPEliq~~----~~pe~la~~l~~ll~~--~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~ 377 (381)
T COG0763 304 VKLPYVSLPNILAGREIVPELIQED----CTPENLARALEELLLN--GDRREALKEKFRELHQYLREDPASEIAAQAVLE 377 (381)
T ss_pred ccCCcccchHHhcCCccchHHHhhh----cCHHHHHHHHHHHhcC--hHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33311 111222333 7899999999999998 223357888888999988877688888888888
Q ss_pred HHH
Q 039043 443 KLH 445 (449)
Q Consensus 443 ~~~ 445 (449)
.+.
T Consensus 378 ~~~ 380 (381)
T COG0763 378 LLL 380 (381)
T ss_pred Hhc
Confidence 764
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.29 E-value=0.00041 Score=68.02 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=69.4
Q ss_pred CCeEEEeccc--hh---hhhhcCCCccceeccC---Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeee
Q 039043 315 GRGFIHGGWV--QQ---QLILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 315 ~~~~~~~~~~--pq---~~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 385 (449)
.+++.+..+. ++ .++++.+++ |+.-. |+ .++.||+++|+|+|+....+ ....+.+. ..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccC-CceEEeC-
Confidence 3467776765 33 257888888 88643 33 48999999999999876432 23345554 5565443
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHh
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREF-LRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.+.++.+|.+++++ ++.++...+-+.. +.+.-+-...++.+++.+++
T Consensus 323 -------~~~~~a~~i~~ll~~------~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -------TVEEAAVRILYLLRD------PELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -------CcHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 345677899999988 5544433332222 33344556667777776654
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.29 E-value=7.6e-05 Score=72.49 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=82.8
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hhhcCCCcc
Q 039043 260 FCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LILKHPSVG 336 (449)
Q Consensus 260 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~lL~~~~~~ 336 (449)
++..|++. .......++++++..+.+++++ |.+.. .+.+.. ...+|+.+.+++|+. ++++.+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g~~--------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDGPE--------LDRLRA-KAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECChh--------HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 44456654 3355667777877777665554 43311 011111 234689999999984 57888998
Q ss_pred cee--ccCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 337 CFV--THCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 337 ~~I--~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+| +.-|+ .++.||+++|+|+|+....+ ....+++. +.|..++.. ++++++++|.+++++
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~~------~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEEQ------TVESLAAAVERFEKN 326 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCCC------CHHHHHHHHHHHHhC
Confidence 55 34444 45779999999999976533 33445665 678877764 788899999999998
No 99
>PLN00142 sucrose synthase
Probab=98.24 E-value=0.00047 Score=72.55 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=49.8
Q ss_pred CeEEEec----cchhhhhhc----CCCccceecc---CCch-hHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 316 RGFIHGG----WVQQQLILK----HPSVGCFVTH---CGSG-SLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 316 ~~~~~~~----~~pq~~lL~----~~~~~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
++|.+.+ ..+..+++. .+++ ||.- -|+| ++.||+++|+|+|+.... .....+++- .-|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEe
Confidence 4565543 333344544 3455 7753 4555 889999999999986543 345566654 568888
Q ss_pred eecCCCCcccHHHHHHHHHHHh
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll 405 (449)
+.. ++++++++|.+++
T Consensus 715 ~P~------D~eaLA~aI~~lL 730 (815)
T PLN00142 715 DPY------HGDEAANKIADFF 730 (815)
T ss_pred CCC------CHHHHHHHHHHHH
Confidence 764 6788888876654
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.24 E-value=0.00062 Score=67.78 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred EEeccchhhhhhcCCCccceeccC----CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccH
Q 039043 319 IHGGWVQQQLILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTR 394 (449)
Q Consensus 319 ~~~~~~pq~~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~ 394 (449)
++..+.+..+++..+++ ||.-+ =.+++.||+++|+|+|+.-.... ..+.+- +-|... . +.
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~-~ng~~~--~------~~ 350 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQF-PNCRTY--D------DG 350 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecC-CceEec--C------CH
Confidence 35566666679999998 98774 34688999999999999865432 233333 444333 2 67
Q ss_pred HHHHHHHHHHhcC
Q 039043 395 DGVCKAVKAVIDD 407 (449)
Q Consensus 395 ~~l~~~i~~ll~~ 407 (449)
+++.+++.++|++
T Consensus 351 ~~~a~ai~~~l~~ 363 (462)
T PLN02846 351 KGFVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHHHcc
Confidence 7999999999986
No 101
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.17 E-value=0.0034 Score=62.62 Aligned_cols=79 Identities=10% Similarity=-0.061 Sum_probs=54.6
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc---CCc-hhHHHHHhhCCcEeccccccchhhHHHHHH---hhhcceeEee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMG---EELKVGVEVE 384 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~~G~G~~~~ 384 (449)
.++|.+..++|+. .+|+.+++ +|+- -|+ .++.||+++|+|+|+.-..+.- ...++ +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe-
Confidence 4689998998865 57888888 6642 233 4788999999999986543211 11222 33 566542
Q ss_pred ecCCCCcccHHHHHHHHHHHhcC
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.++++++++|.+++++
T Consensus 377 -------~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 -------STAEEYAEAIEKILSL 392 (419)
T ss_pred -------CCHHHHHHHHHHHHhC
Confidence 2788999999999986
No 102
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=0.00032 Score=66.64 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=97.0
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHH----HhC-CCCEEEEEcCCCCCCccccCCChhHH-HhcC-CCeEEEec---cc
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGF----ELS-GLPFLVALKPPVGHDTIESALPEGFE-ERVK-GRGFIHGG---WV 324 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al----~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~-~~~~-~~~~~~~~---~~ 324 (449)
.+..+.||+=--.+.. +.+..++.++ +.. +..++..+..... + ..+. ...+ ..++.+.. |.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~-------v-~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRPR-------V-RELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChh-------h-hHHHHHHhCCCCcEEEeCCcchH
Confidence 3458888764333333 5566666653 334 3445555443311 1 1111 2222 23576655 45
Q ss_pred hhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 325 QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 325 pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+...++.+|.+ ++|-.|. ..-||-..|+|++++=...|||. ++ +. |.-+.+. .+.+.+.+++.++
T Consensus 274 ~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~a-gt~~lvg-------~~~~~i~~~~~~l 338 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EA-GTNILVG-------TDEENILDAATEL 338 (383)
T ss_pred HHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ec-CceEEeC-------ccHHHHHHHHHHH
Confidence 66789999998 9999874 56799999999999999999998 22 24 5443333 3679999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 039043 405 IDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFV 441 (449)
Q Consensus 405 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 441 (449)
+++ +++.+|.+....-.-++..+.+.++.+.
T Consensus 339 l~~------~~~~~~m~~~~npYgdg~as~rIv~~l~ 369 (383)
T COG0381 339 LED------EEFYERMSNAKNPYGDGNASERIVEILL 369 (383)
T ss_pred hhC------hHHHHHHhcccCCCcCcchHHHHHHHHH
Confidence 999 7777665554444433333344444333
No 103
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.12 E-value=0.0055 Score=60.08 Aligned_cols=109 Identities=14% Similarity=0.027 Sum_probs=65.5
Q ss_pred CCeEEEeccchhh---hhhcCCCcccee------ccCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFV------THCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I------~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
.+||.+.+++|+. ..++++++.++- +.++. +.+.|++++|+|+|+.++ ...++.. + |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEe
Confidence 3689999999865 467788883221 23333 458999999999998763 1223332 3 33333
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
. -+.+++.++|.+++.+. .....++ .+ + +..+.+=++.++.+++.+.+
T Consensus 324 ~------~d~~~~~~ai~~~l~~~---~~~~~~~-~~---~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 A------DDPEEFVAAIEKALLED---GPARERR-RL---R-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred C------CCHHHHHHHHHHHHhcC---CchHHHH-HH---H-HHHHCCHHHHHHHHHHHHHh
Confidence 3 27999999999987651 1011221 11 1 33344455566666666554
No 104
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.09 E-value=0.005 Score=64.93 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=53.0
Q ss_pred CCeEEEeccc-hh---hhhhcC----CCccceecc---CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeE
Q 039043 315 GRGFIHGGWV-QQ---QLILKH----PSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVE 382 (449)
Q Consensus 315 ~~~~~~~~~~-pq---~~lL~~----~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 382 (449)
.++|.+.++. +. .+++.+ +++ ||+- =|+ .++.||+++|+|+|+.-.. ..+..+++- .-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEE
Confidence 3567776664 32 245542 345 7753 343 4888999999999986543 455566665 66888
Q ss_pred eeecCCCCcccHHHHHHHHHHHh
Q 039043 383 VEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
++.. ++++++++|.+++
T Consensus 691 Vdp~------D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDPY------HGEEAAEKIVDFF 707 (784)
T ss_pred eCCC------CHHHHHHHHHHHH
Confidence 8764 7889999998876
No 105
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.00 E-value=0.0027 Score=64.53 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=75.0
Q ss_pred CCeEEEeccchhhhhhcCCCccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC-CC
Q 039043 315 GRGFIHGGWVQQQLILKHPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD-ED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq~~lL~~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~-~~ 389 (449)
.+++.+.++.+..++++.+++ +|. .-|+ .++.||+++|+|+|+.-... .+...+++- .-|..++... .+
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 457888888888899999999 775 3344 58899999999999976531 133345444 4576666320 00
Q ss_pred Cccc-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 390 GLFT-RDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 390 ~~~~-~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
..-+ .++|+++|.+++++ +....|.+++.+.++.+. ....++.+.+.++
T Consensus 449 d~~~~~~~la~~I~~ll~~---~~~~~~~~~a~~~a~~fs----~~~v~~~w~~ll~ 498 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNS---NDIDAFHEYSYQIAEGFL----TANIIEKWKKLVR 498 (500)
T ss_pred chhHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHh
Confidence 0012 78899999999965 334556666666544433 4445555544443
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.98 E-value=0.0015 Score=66.30 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=52.5
Q ss_pred CeEEEe-ccchh--hhhhcCCCccceecc---CCc-hhHHHHHhhCCcEecccccc--chhhHHHHHHhhhcceeEeeec
Q 039043 316 RGFIHG-GWVQQ--QLILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVG--DQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 316 ~~~~~~-~~~pq--~~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
.++.+. .+... ..+++.+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.......+. |.|..++..
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~~ 427 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEGY 427 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCCC
Confidence 466543 44322 247888888 7753 233 47789999999999866532 211111111134 578877764
Q ss_pred CCCCcccHHHHHHHHHHHhcC
Q 039043 387 DEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+++++.++|.++++.
T Consensus 428 ------~~~~l~~~i~~~l~~ 442 (476)
T cd03791 428 ------NADALLAALRRALAL 442 (476)
T ss_pred ------CHHHHHHHHHHHHHH
Confidence 789999999998864
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.97 E-value=0.0002 Score=71.10 Aligned_cols=113 Identities=17% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc---------CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH---------CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H---------gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
.+++.+.+|+|+. ++++.+++ ||.- -|. +++.||+++|+|+|+.... .....+++- ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 4689999999875 47788998 7753 344 5789999999999987543 234455554 5787
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhc-CCCchhHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVID-DDHSEVGKEIKE-NHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~-~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.++.. +.+++.++|.++++ | ++.++ -.+.-.+.+.+.-.....++.+.+.+++
T Consensus 351 lv~~~------d~~~la~ai~~l~~~d------~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPEN------DAQALAQRLAAFSQLD------TDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCCC------CHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 77654 89999999999999 7 44322 2222233333444555666666666654
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=9.6e-05 Score=58.69 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=79.7
Q ss_pred EEEEeCCcccCCHHHHHH---HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchh-hhhhcCCC
Q 039043 259 IFCAFGSECVLNKEQFQE---LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQ-QLILKHPS 334 (449)
Q Consensus 259 v~vs~GS~~~~~~~~~~~---~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq-~~lL~~~~ 334 (449)
+|||-||... +-..... +..-.+.-..++|+.+|.+. ...+ .| -.++-+.+-+- ..+...++
T Consensus 2 ifVTvGstf~-~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-----~kpv-ag-------l~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFY-PFNRLVLKIEVLELTELIQEELIVQYGNGD-----IKPV-AG-------LRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccc-hHHHHHhhHHHHHHHHHhhhheeeeecCCC-----cccc-cc-------cEEEeechHHHHHHHhhcce
Confidence 7899999842 2222111 22222334567898888752 1111 11 12333344443 46777788
Q ss_pred ccceeccCCchhHHHHHhhCCcEecccccc--------chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNVG--------DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
+ +|+|+|.||+..++..++|.|++|-.. .|-..|..+.+. +.-+...+.+ ..-.+.+.....+++.
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~spte---~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSPTE---LVLQAGLQVSVADVLH 141 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcCCc---hhhHHhHhhhhhhhcC
Confidence 8 999999999999999999999999643 588889999987 7766665443 1123444444445443
No 109
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.97 E-value=0.0013 Score=64.29 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCeEEEeccchhh-hhhcCCCccceeccC-C-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCc
Q 039043 315 GRGFIHGGWVQQQ-LILKHPSVGCFVTHC-G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGL 391 (449)
Q Consensus 315 ~~~~~~~~~~pq~-~lL~~~~~~~~I~Hg-G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 391 (449)
..++.+.++.++. .+++.+++-++.++. | ..++.||+++|+|+|+..... .....+++. ..|..++..
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~~----- 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPKG----- 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCCC-----
Confidence 3577787777664 689999994444442 3 458999999999999965431 133445555 677777653
Q ss_pred ccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 039043 392 FTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFL 427 (449)
Q Consensus 392 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~ 427 (449)
+.++++++|.+++++ .+...++.+++.+.++.+
T Consensus 331 -d~~~la~~i~~ll~~--~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 -DIEALAEAIIELLND--PKLLQKFSEAAYENAERY 363 (372)
T ss_pred -cHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHh
Confidence 899999999999998 133345555555554433
No 110
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.95 E-value=0.0047 Score=59.54 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=80.9
Q ss_pred CeEEEeccchhhhh---hcCCCccceeccC-------Cc------hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcc
Q 039043 316 RGFIHGGWVQQQLI---LKHPSVGCFVTHC-------GS------GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKV 379 (449)
Q Consensus 316 ~~~~~~~~~pq~~l---L~~~~~~~~I~Hg-------G~------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 379 (449)
+|+.+.+|+|+.++ |+. +.+++...- .+ +-+.++|++|+|+|+. ++...+..+++. ++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 48999999998765 444 433332211 11 1267889999999985 456788899998 99
Q ss_pred eeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 039043 380 GVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQK 443 (449)
Q Consensus 380 G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 443 (449)
|..++ +.+++.+++.++.. +...+|+++++++++.++.+--.++++++++..
T Consensus 281 G~~v~--------~~~el~~~l~~~~~----~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD--------SLEELPEIIDNITE----EEYQEMVENVKKISKLLRNGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC--------CHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhc
Confidence 98876 23578888888543 344789999999999999888888888877653
No 111
>PLN02949 transferase, transferring glycosyl groups
Probab=97.95 E-value=0.0048 Score=62.12 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=67.4
Q ss_pred CCeEEEeccchhh---hhhcCCCccceec---cCCch-hHHHHHhhCCcEeccccccchhhHHHHHHh--hhc-ceeEee
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVT---HCGSG-SLSEAMVNECQLVLLPNVGDQIINARLMGE--ELK-VGVEVE 384 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~~G-~G~~~~ 384 (449)
.+++.+..++|+. ++|+.+++ +|+ +-|+| ++.||+++|+|+|+....+--. ..+.+ . | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~-g~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDG-QQTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCC-CcccccC-
Confidence 4678888999764 47888888 763 34444 7899999999999986543100 00111 1 1 23221
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
-+.++++++|.+++++. .+...++.+++++-.+. -+..+..+.+.+.+++
T Consensus 407 -------~~~~~la~ai~~ll~~~-~~~r~~m~~~ar~~~~~----FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMR-ETERLEIAAAARKRANR----FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -------CCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHH
Confidence 26889999999999841 11123455555554433 3344455555555544
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.94 E-value=0.00042 Score=68.16 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=81.2
Q ss_pred CCeEEEeccchhh---hhhcCCCccceecc----CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeec
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTH----CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~H----gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
..++.+.+++|+. ++++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeCC
Confidence 3578888898854 56888999 7753 343 5778999999999997653 344455555 567655433
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 387 DEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
.++++++++|.++++| ++.++..+.-.+...+.-+-.+.++.+++.++++-
T Consensus 329 -----~d~~~la~~I~~ll~d------~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 329 -----MTSDSIISDINRTLAD------PELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred -----CCHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 4899999999999998 65544444444444455566777888888887653
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.92 E-value=0.0025 Score=64.68 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=59.1
Q ss_pred CCeEEEeccchhhhhhcCCCccceeccC---C-chhHHHHHhhCCcEeccccccchhhHHHHHHhh----hc-ceeEeee
Q 039043 315 GRGFIHGGWVQQQLILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEE----LK-VGVEVEK 385 (449)
Q Consensus 315 ~~~~~~~~~~pq~~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~G-~G~~~~~ 385 (449)
.+++.+.+.....++++.+++ +|.-. | -+++.||+++|+|+|+-.. ......+++. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 468888886556788998998 66443 3 3689999999999999533 3344455542 02 6766765
Q ss_pred cCCCCcccHHHHHHHHHHHhcC
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
. ++++++++|.++++|
T Consensus 427 ~------d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 A------DPEALARAILRLLKD 442 (475)
T ss_pred C------CHHHHHHHHHHHhcC
Confidence 4 899999999999998
No 114
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.84 E-value=0.0065 Score=61.49 Aligned_cols=116 Identities=10% Similarity=0.107 Sum_probs=65.6
Q ss_pred eEE-Eeccchh--hhhhcCCCccceecc---CCch-hHHHHHhhCCcEecccccc--chhhHHHHHHhhhcceeEeeecC
Q 039043 317 GFI-HGGWVQQ--QLILKHPSVGCFVTH---CGSG-SLSEAMVNECQLVLLPNVG--DQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 317 ~~~-~~~~~pq--~~lL~~~~~~~~I~H---gG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
++. +..|-.. ..+++.+++ +|.- -|+| +.+||+++|+|.|+....+ |.-.+...-.+. +.|..++..
T Consensus 338 ~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~- 413 (466)
T PRK00654 338 KVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF- 413 (466)
T ss_pred cEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC-
Confidence 443 3455333 257889998 7753 3554 7889999999999865432 211111001234 668777764
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHhc
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFL-RSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 447 (449)
++++|.++|.++++...+ ++. .+++++.. +..-+-++.+++.++..++.
T Consensus 414 -----d~~~la~~i~~~l~~~~~---~~~---~~~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 414 -----NAEDLLRALRRALELYRQ---PPL---WRALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred -----CHHHHHHHHHHHHHHhcC---HHH---HHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 789999999998863100 221 12222222 23344555666666655543
No 115
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.78 E-value=0.00056 Score=67.58 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=93.3
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHH-hcCCCeEEEeccchhhh---hh
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEE-RVKGRGFIHGGWVQQQL---IL 330 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~pq~~---lL 330 (449)
++.++|.+|.+....+++.+....+.|+..+...+|....... ....+-.-+.. -...+.+++..+.++.+ .+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~---~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS---GEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT---HHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH---HHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 4459999999999999999999999999988888888765321 11111111111 13346788878777544 44
Q ss_pred cCCCcccee---ccCCchhHHHHHhhCCcEecccccc-chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFV---THCGSGSLSEAMVNECQLVLLPNVG-DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I---~HgG~gs~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+|+ ++ ..+|.+|++|||+.|||+|.+|-.. =...-|..+..+ |+...+-. +.++-.+.-.++-+
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~l-Gl~ElIA~-------s~~eYv~~Av~La~ 429 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRAL-GLPELIAD-------SEEEYVEIAVRLAT 429 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHH-T-GGGB-S-------SHHHHHHHHHHHHH
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHc-CCchhcCC-------CHHHHHHHHHHHhC
Confidence 55776 54 5679999999999999999999532 334455566655 88865443 56665555556666
Q ss_pred CCCchhHHHHHHHH-HHHHHHHHhc--CcchHHHHHHHHHHH
Q 039043 407 DDHSEVGKEIKENH-AKWREFLRSE--RLENSYLDGFVQKLH 445 (449)
Q Consensus 407 ~~~~~~~~~~~~~a-~~l~~~~~~~--~~~~~~~~~~~~~~~ 445 (449)
| .+++++. +++.+..... ....+.+..|++.++
T Consensus 430 D------~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 430 D------PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp -------HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 6 4433332 2333333322 334455666665554
No 116
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.70 E-value=0.00034 Score=60.29 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCeEEEEEeCCccc-CCHHHHHHHHHHHHh-CCCC-EEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccch--h-hh
Q 039043 255 SKSLIFCAFGSECV-LNKEQFQELVLGFEL-SGLP-FLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQ--Q-QL 328 (449)
Q Consensus 255 ~k~~v~vs~GS~~~-~~~~~~~~~~~al~~-~~~~-~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p--q-~~ 328 (449)
+++.+++..|+... ...+.+..++.-+.. .... .++.+|... ....+-..........++.+..+++ + .+
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE----YKKELKNLIEKLNLKENIIFLGYVPDDELDE 88 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC----HHHHHHHHHHHTTCGTTEEEEESHSHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc----ccccccccccccccccccccccccccccccc
Confidence 34466677777664 233444444333332 1233 444454211 0111111111223345888889887 3 46
Q ss_pred hhcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 329 ILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 329 lL~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
++..+++ +|+. |+.+++.||+.+|+|+|+.- ...+...+.+. +.|..++.. +.+++.++|.++
T Consensus 89 ~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~~------~~~~l~~~i~~~ 155 (172)
T PF00534_consen 89 LYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDPN------DIEELADAIEKL 155 (172)
T ss_dssp HHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEESTT------SHHHHHHHHHHH
T ss_pred cccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCCC------CHHHHHHHHHHH
Confidence 8889999 8877 56679999999999999744 55556666666 668777753 899999999999
Q ss_pred hcC
Q 039043 405 IDD 407 (449)
Q Consensus 405 l~~ 407 (449)
+++
T Consensus 156 l~~ 158 (172)
T PF00534_consen 156 LND 158 (172)
T ss_dssp HHH
T ss_pred HCC
Confidence 998
No 117
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.68 E-value=0.0024 Score=57.07 Aligned_cols=49 Identities=22% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCeEEEeccchh---h-hhhcCCCccceeccCC----chhHHHHHhhCCcEeccccccc
Q 039043 315 GRGFIHGGWVQQ---Q-LILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGD 365 (449)
Q Consensus 315 ~~~~~~~~~~pq---~-~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~D 365 (449)
..|+.+.++++. . .+++.+++ +|+-.. .+++.||+.+|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 357877787632 2 34444888 888776 6899999999999999886543
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.68 E-value=0.018 Score=57.03 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhCCCCE-EEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccc-hh---hhhhcCCCccceeccC----
Q 039043 272 EQFQELVLGFELSGLPF-LVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWV-QQ---QLILKHPSVGCFVTHC---- 342 (449)
Q Consensus 272 ~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~-pq---~~lL~~~~~~~~I~Hg---- 342 (449)
..+..++++++..+.++ ++.+|.+.. ..+ .++....+. ++ .++++.+++ ||.-.
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~------~~~---------~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Eg 318 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSP------FTA---------GNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDN 318 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCc------ccc---------cceEEecCcCCHHHHHHHHHhCCE--EEECCcccc
Confidence 44567888887765443 445554311 111 245444554 22 356777888 77643
Q ss_pred CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 039043 343 GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAK 422 (449)
Q Consensus 343 G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~ 422 (449)
--.++.||+++|+|+|+....+ -++ +.+. +-|..++.. +.++|+++++..+.+ ..+.+..+.
T Consensus 319 fp~vilEAmA~G~PVVat~~gG-~~E----iv~~-~~G~lv~~~------d~~~La~~~~~~~~~------~~~~~~~~~ 380 (405)
T PRK10125 319 YPLILCEALSIGVPVIATHSDA-ARE----VLQK-SGGKTVSEE------EVLQLAQLSKPEIAQ------AVFGTTLAE 380 (405)
T ss_pred CcCHHHHHHHcCCCEEEeCCCC-hHH----hEeC-CcEEEECCC------CHHHHHhccCHHHHH------HhhhhHHHH
Confidence 3368999999999999988764 222 2334 668777765 678888754332222 222221233
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHh
Q 039043 423 WREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 423 l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
..+...+.-+....+++.++..++
T Consensus 381 ~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 381 FSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 344444455566677777666543
No 119
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.67 E-value=0.00092 Score=66.39 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCeEEEeccchhhh---hhcCCCccceeccCC----chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQL---ILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~~---lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
..++.+.+|+++.+ ++..+++.+||...- .++++||+++|+|+|+.... .....+.+. +.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCCC-
Confidence 45788999999764 554444434776543 46899999999999986543 355566654 588777765
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+.+++.++|.++++|
T Consensus 362 ----~~~~~la~~I~~ll~~ 377 (407)
T cd04946 362 ----PTPNELVSSLSKFIDN 377 (407)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 4899999999999997
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.65 E-value=0.0037 Score=64.26 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=52.8
Q ss_pred eEEEeccchhh-hhhcCCCccceecc---CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCc
Q 039043 317 GFIHGGWVQQQ-LILKHPSVGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGL 391 (449)
Q Consensus 317 ~~~~~~~~pq~-~lL~~~~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 391 (449)
++.+.++.++. ++++.+++ ||.- =| ..++.||+++|+|+|+.-..+... +.+ |.+..+. +
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~--~---- 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY--K---- 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec--C----
Confidence 46666777765 58999998 8763 33 368889999999999987754321 222 3222222 2
Q ss_pred ccHHHHHHHHHHHhcC
Q 039043 392 FTRDGVCKAVKAVIDD 407 (449)
Q Consensus 392 ~~~~~l~~~i~~ll~~ 407 (449)
+.+++.++|.++|++
T Consensus 667 -D~EafAeAI~~LLsd 681 (794)
T PLN02501 667 -TSEDFVAKVKEALAN 681 (794)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 789999999999998
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.44 E-value=0.00045 Score=56.84 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=68.5
Q ss_pred EEEEEeCCccc-CCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh-hhhcCCC
Q 039043 258 LIFCAFGSECV-LNKEQFQE-LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ-LILKHPS 334 (449)
Q Consensus 258 ~v~vs~GS~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~-~lL~~~~ 334 (449)
+.++++|+... ...+.+.. ++..+.+...++.+.+-+. .|+.+... ..+++.+.+|++.. ++++.++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~---------~~~~l~~~-~~~~v~~~g~~~e~~~~l~~~d 72 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN---------GPDELKRL-RRPNVRFHGFVEELPEILAAAD 72 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE---------SS-HHCCH-HHCTEEEE-S-HHHHHHHHC-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC---------CHHHHHHh-cCCCEEEcCCHHHHHHHHHhCC
Confidence 34555565543 34454554 6666654434444443221 11111111 23589999999763 6899999
Q ss_pred ccceecc--CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 335 VGCFVTH--CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 335 ~~~~I~H--gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+.+..+. .| .+++.|++.+|+|+|+.+.. .....+.. +.|..+ . -+++++.++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~--~-----~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV--A-----NDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T-----T-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE--C-----CCHHHHHHHHHHHhcC
Confidence 9555442 23 48999999999999997772 22344445 888766 4 3899999999999875
No 122
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.41 E-value=0.11 Score=52.83 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=69.8
Q ss_pred CCeEEEeccchh-hhhhcCCCccceecc---CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 315 GRGFIHGGWVQQ-QLILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 315 ~~~~~~~~~~pq-~~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
.+++.+.+|..+ ..+|+.+++ ||.. -|+ +++.||+++|+|+|+.... .+...+.+- ..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECCC---
Confidence 467888888765 368999999 8853 454 6899999999999987653 455566666 678777764
Q ss_pred CcccHHHHHHHH------HHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 390 GLFTRDGVCKAV------KAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 390 ~~~~~~~l~~~i------~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.+.+.+++ .+++.+. ..+.+++++ .+.+.-+..+.++...+.+++
T Consensus 524 ---D~~aLa~ai~lA~aL~~ll~~~-----~~mg~~ARe---~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 ---QTVNLDQACRYAEKLVNLWRSR-----TGICQQTQS---FLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred ---ChhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHH---HHHhhCCHHHHHHHHHHHHHh
Confidence 344444443 3332220 123333333 234445566677777776664
No 123
>PLN02316 synthase/transferase
Probab=97.34 E-value=0.22 Score=54.50 Aligned_cols=119 Identities=14% Similarity=0.037 Sum_probs=67.3
Q ss_pred CeEEEeccchhh---hhhcCCCccceeccC---Cc-hhHHHHHhhCCcEecccccc--chhh-------HHHHHHhhhcc
Q 039043 316 RGFIHGGWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVG--DQII-------NARLMGEELKV 379 (449)
Q Consensus 316 ~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~--DQ~~-------na~~v~~~~G~ 379 (449)
.++.+....+.. .+++.+|+ |+.-. |. .+.+||+++|+|.|+....+ |.-. .+...... +-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 456554444443 58888998 88643 33 48889999999888765432 2111 11111112 45
Q ss_pred eeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHhcc
Q 039043 380 GVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFL-RSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 380 G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 448 (449)
|..++. -+++.|..+|.+++.++ ...++....+++.. ...-+-.+.++..++..+..+
T Consensus 977 Gflf~~------~d~~aLa~AL~raL~~~-----~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 977 GFSFDG------ADAAGVDYALNRAISAW-----YDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred eEEeCC------CCHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 766665 38899999999999862 12222222233332 223344455666666555543
No 124
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.95 E-value=0.17 Score=46.77 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCcc--ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKA--ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.-|+.=+..|-.+|.++||+|.+-+-+.. .+.+...| +.+..+.-... . .....+....
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg-----f~~~~Igk~g~--~------------tl~~Kl~~~~ 70 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG-----FPYKSIGKHGG--V------------TLKEKLLESA 70 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC-----CCeEeecccCC--c------------cHHHHHHHHH
Confidence 45777788999999999999988776543 45566667 77777751100 0 1111222222
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecchH
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.....+.+++.+++||+.+.-.++-+..+|--+|+|.+.+.-...
T Consensus 71 -eR~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 71 -ERVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred -HHHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCChh
Confidence 233568899999999999994488889999999999998866543
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.83 E-value=0.023 Score=54.34 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=77.3
Q ss_pred CCeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh-hhh
Q 039043 255 SKSLIFCAFGSECV---LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ-LIL 330 (449)
Q Consensus 255 ~k~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~-~lL 330 (449)
+++.|.+..|+... .+.+.+.+++..+...+.++++..+.... ....+.+.......++.=.--+++. +++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-----~~~~~~i~~~~~~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-----KQRAERIAEALPGAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----HHHHHHHHhhCCCCeecCCCCHHHHHHHH
Confidence 34566666665333 66688999999987667777665443211 1111222222111222111235564 799
Q ss_pred cCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
++|++ +|+. -.|.++=|...|+|.|++=-..+ ..+-.=. |-...+-.......++++++.++++++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~P~-~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTGGY-GKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----HhhcccC-CCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99999 9986 67889999999999987521111 1110000 1111111111123499999999998875
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.82 E-value=0.62 Score=46.36 Aligned_cols=179 Identities=8% Similarity=0.009 Sum_probs=100.4
Q ss_pred ccccCCCCCeEEEEEeCCcccC------CH----HHHHHHHHHHHhCCCCEEEEEcCCCC-C-CccccCCChhHHHhcCC
Q 039043 248 TLLGSFKSKSLIFCAFGSECVL------NK----EQFQELVLGFELSGLPFLVALKPPVG-H-DTIESALPEGFEERVKG 315 (449)
Q Consensus 248 ~~l~~~~~k~~v~vs~GS~~~~------~~----~~~~~~~~al~~~~~~~i~~~~~~~~-~-~~~~~~lp~~~~~~~~~ 315 (449)
.|+.....++.|-|+....... +. +.+..++..+...|+++++.-..... . ..........+...+..
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4444333456787776544311 21 22334555555568887766432110 0 00000111122233322
Q ss_pred -Ce--EEEeccchh--hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeE-eeecCCC
Q 039043 316 -RG--FIHGGWVQQ--QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVE-VEKGDED 389 (449)
Q Consensus 316 -~~--~~~~~~~pq--~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-~~~~~~~ 389 (449)
.+ ++...+-+. ..+++++++ +|..==+ ++--|+..|||.+.+++. +-....++++ |.... .+..+
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y~---~K~~~~~~~l-g~~~~~~~~~~-- 376 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINYE---HKSAGIMQQL-GLPEMAIDIRH-- 376 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeeeh---HHHHHHHHHc-CCccEEechhh--
Confidence 22 223223333 378889988 8864322 466689999999999993 5555566776 88866 55655
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
++.++|.+.+.++++|. ++++++.+.-.+.++.. ..+.+.++++.+
T Consensus 377 --l~~~~Li~~v~~~~~~r-----~~~~~~l~~~v~~~r~~--~~~~~~~~~~~~ 422 (426)
T PRK10017 377 --LLDGSLQAMVADTLGQL-----PALNARLAEAVSRERQT--GMQMVQSVLERI 422 (426)
T ss_pred --CCHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 89999999999999984 56666666555555532 333444555444
No 127
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.51 E-value=0.0044 Score=52.01 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCcccccc--CCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKF--EPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEP 89 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~--~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (449)
-+..|+++|.++||+|++++.......- ...| +.+..+|++.... ... . .....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------~~~--------~-----~~~~~ 61 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDG-----VRVHRLPLPRRPW------PLR--------L-----LRFLR 61 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETT-----EEEEEE--S-SSS------GGG--------H-----CCHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCC-----ceEEeccCCccch------hhh--------h-----HHHHH
Confidence 4678999999999999999976554432 2234 8888887432110 000 0 00123
Q ss_pred HHHHHH--hhcCCCEEEEcC--CCChHHHHH-HhCCceEEEec
Q 039043 90 AIESVL--RHLKPDFVFFDF--THWLPPLAR-KFGIKSVLYCI 127 (449)
Q Consensus 90 ~~~~ll--~~~~pD~vI~D~--~~~~~~~A~-~~giP~v~~~~ 127 (449)
.+..++ ++.+||+|.+.. ......+++ ..++|+|....
T Consensus 62 ~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 455566 778999999876 333344445 88999987643
No 128
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.30 E-value=0.0085 Score=45.97 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=49.6
Q ss_pred hcccccccCCCCCeEEEEEeCCcccC---CH--HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCCh
Q 039043 244 ERWETLLGSFKSKSLIFCAFGSECVL---NK--EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPE 307 (449)
Q Consensus 244 ~~l~~~l~~~~~k~~v~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~ 307 (449)
..+..|+...+.+|-|+||+||.... .. ..+..++++++.++..++..++..... ..+.+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~--~lg~lP~ 94 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA--ELGELPD 94 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG--GCCS-TT
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH--hhCCCCC
Confidence 45777999999999999999999874 22 578889999999999999999876443 3467776
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.063 Score=53.62 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHh-----cCCCeEEEeccchhh--
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEER-----VKGRGFIHGGWVQQQ-- 327 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~~~pq~-- 327 (449)
+.-+||+||+......++.+...+.-|+.....++|..+.+.+++ +-+.+... +.....++.+-.|..
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~-----~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE-----INARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH-----HHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 455999999999999999999999999988889999988864322 22222211 334566776666643
Q ss_pred -hhhcCCCccceec---cCCchhHHHHHhhCCcEeccccccchh--hHHHHHHhhhcceeEeee
Q 039043 328 -LILKHPSVGCFVT---HCGSGSLSEAMVNECQLVLLPNVGDQI--INARLMGEELKVGVEVEK 385 (449)
Q Consensus 328 -~lL~~~~~~~~I~---HgG~gs~~eal~~GvP~l~~P~~~DQ~--~na~~v~~~~G~G~~~~~ 385 (449)
+=+..+|+ |+- -||..|..|+|..|||+|..+ ++|+ .|+..+...+|+-..+-.
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~ 562 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD 562 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC
Confidence 45556777 764 699999999999999999886 4453 233333332265544443
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.07 E-value=0.077 Score=43.64 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccccccC-CCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAKAITKFE-PSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~-~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
...++++|.++||+|++++.....+... ..| +++..++.+ . ......+ . . -.+
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~-----i~~~~~~~~----~-----------k~~~~~~----~-~-~~l 66 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDYEKYEIIEG-----IKVIRLPSP----R-----------KSPLNYI----K-Y-FRL 66 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCC-----eEEEEecCC----C-----------CccHHHH----H-H-HHH
Confidence 5688999999999999999966543332 334 777777521 0 0011122 1 2 278
Q ss_pred HHHHhhcCCCEEEEcC-CC---ChHHHHHHhC-CceEEEec
Q 039043 92 ESVLRHLKPDFVFFDF-TH---WLPPLARKFG-IKSVLYCI 127 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~-~~---~~~~~A~~~g-iP~v~~~~ 127 (449)
..++++.+||+|.+.. .. .+..+++..+ +|+|....
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 9999999999998766 33 2345667788 89986543
No 131
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.87 E-value=1.7 Score=41.29 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=40.4
Q ss_pred hhhhhhcCCCccceeccCCc-hhHHHHHhhCCcEeccccccchhhH---HHHHHhhhcceeEeee
Q 039043 325 QQQLILKHPSVGCFVTHCGS-GSLSEAMVNECQLVLLPNVGDQIIN---ARLMGEELKVGVEVEK 385 (449)
Q Consensus 325 pq~~lL~~~~~~~~I~HgG~-gs~~eal~~GvP~l~~P~~~DQ~~n---a~~v~~~~G~G~~~~~ 385 (449)
|+...|+.++. +|.-+.. +.+.||+..|+|+.++|...-.... ...+++. |.-...+.
T Consensus 221 Py~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHC-CCEEECCC
Confidence 56789999998 7777765 7889999999999999986511222 2334444 66555543
No 132
>PRK14098 glycogen synthase; Provisional
Probab=95.81 E-value=0.14 Score=52.20 Aligned_cols=83 Identities=8% Similarity=-0.053 Sum_probs=54.8
Q ss_pred CCeEEEeccchhh---hhhcCCCccceeccC---Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
+.++.+...++.. .+++.+|+ |+.-. |. .+.+||+++|+|.|+....+-........++. +.|..++..
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~~~- 436 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFHDY- 436 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeCCC-
Confidence 3578777777763 68889999 77643 33 36789999999888876532111110111234 677777653
Q ss_pred CCCcccHHHHHHHHHHHhc
Q 039043 388 EDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~ 406 (449)
+++++.++|.++++
T Consensus 437 -----d~~~la~ai~~~l~ 450 (489)
T PRK14098 437 -----TPEALVAKLGEALA 450 (489)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 78999999998763
No 133
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.65 E-value=0.2 Score=50.81 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=66.6
Q ss_pred CeEEEeccchhh---hhhcCCCccceeccC---Cch-hHHHHHhhCCcEecccccc--chhhHHHHHHhhhcceeEeeec
Q 039043 316 RGFIHGGWVQQQ---LILKHPSVGCFVTHC---GSG-SLSEAMVNECQLVLLPNVG--DQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 316 ~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~g-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
.++.+....+.. .+++.+++ +|.-. |+| +.+||+++|+|+|+....+ |.-.+...-.+. +.|..++..
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~~ 422 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEEY 422 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCCC
Confidence 456554444443 57888998 77542 544 7889999999999876532 211110000223 667777654
Q ss_pred CCCCcccHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHh
Q 039043 387 DEDGLFTRDGVCKAVKAVID----DDHSEVGKEIKENHAKWREFLR-SERLENSYLDGFVQKLHG 446 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~ 446 (449)
+++++.++|.+++. + ++..+ ++++... ..-+-.+.++++++..++
T Consensus 423 ------d~~~la~~i~~~l~~~~~~------~~~~~---~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 423 ------DPGALLAALSRALRLYRQD------PSLWE---ALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred ------CHHHHHHHHHHHHHHHhcC------HHHHH---HHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 78999999999887 4 33222 2222222 234455566666666543
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=95.51 E-value=0.5 Score=45.43 Aligned_cols=111 Identities=10% Similarity=0.063 Sum_probs=64.3
Q ss_pred cchhh---hhhcCCCccceec---cCC-chhHHHHHhhCCcEecccccc--chh---hHHHHHHh-----------hhcc
Q 039043 323 WVQQQ---LILKHPSVGCFVT---HCG-SGSLSEAMVNECQLVLLPNVG--DQI---INARLMGE-----------ELKV 379 (449)
Q Consensus 323 ~~pq~---~lL~~~~~~~~I~---HgG-~gs~~eal~~GvP~l~~P~~~--DQ~---~na~~v~~-----------~~G~ 379 (449)
++|+. .+++.+++ +|. ..| ..++.||+++|+|+|+.-..+ |.- .|...+.. . ++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-cc
Confidence 35543 47888998 663 333 358899999999999976532 321 11111110 1 23
Q ss_pred eeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 380 GVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 380 G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
|..++ .+.+++.+++.++|.+ ..-++.+++.+.-+....+.-+-.+.++.+++.+++
T Consensus 274 G~~v~-------~~~~~~~~~ii~~l~~---~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLD-------PDIEDAYQKLLEALAN---WTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccC-------CCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 43333 3567777888888876 100244554444445455555566677777776654
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=0.12 Score=51.96 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=81.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHH-----hcCCCeEEEeccchhhhh
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEE-----RVKGRGFIHGGWVQQQLI 329 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~~~~~~~pq~~l 329 (449)
+..+||.+|--.-..+|+.++..++-|+.....++|.....-. ++ ..|.- -..++.|++.+-+...+-
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-----ge--~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-----GE--QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-----ch--HHHHHHHHHhCCCccceeeccccchHHH
Confidence 3459999998888899999999999999999999999876521 11 22221 133456776665543332
Q ss_pred -----hcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHH-HHHHhhhcceeEeee
Q 039043 330 -----LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINA-RLMGEELKVGVEVEK 385 (449)
Q Consensus 330 -----L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na-~~v~~~~G~G~~~~~ 385 (449)
|..-.++-+.|. |..|.++.|+.|||||.+|...--...| ..+... |+|..+-+
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~-Gl~hliak 889 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTAL-GLGHLIAK 889 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHc-ccHHHHhh
Confidence 222222235554 7889999999999999999865433333 344444 99975544
No 136
>PHA01633 putative glycosyl transferase group 1
Probab=95.26 E-value=0.57 Score=44.92 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=54.7
Q ss_pred CeEEEe---ccchh---hhhhcCCCccceecc---CCc-hhHHHHHhhCCcEecccc------ccch------hhHHHHH
Q 039043 316 RGFIHG---GWVQQ---QLILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPN------VGDQ------IINARLM 373 (449)
Q Consensus 316 ~~~~~~---~~~pq---~~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~------~~DQ------~~na~~v 373 (449)
+++.+. +++++ .++++.+++ ||.- =|+ .++.||+++|+|+|+--. .+|+ ..+....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 467776 44454 367888998 8864 354 578899999999998633 2333 2222222
Q ss_pred H--hhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 374 G--EELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 374 ~--~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
. +. |.|..++. .++++++++|.+++..
T Consensus 279 ~~~~~-g~g~~~~~------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 279 YDKEH-GQKWKIHK------FQIEDMANAIILAFEL 307 (335)
T ss_pred cCccc-CceeeecC------CCHHHHHHHHHHHHhc
Confidence 2 24 66655553 5999999999999654
No 137
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.84 E-value=0.17 Score=43.04 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhc
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLT 87 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (449)
|--.-+..|+++|+++||+|++++............ ......+ ... .... .... ..
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~-----~~~~~~~------~~~--------~~~~---~~~~--~~ 68 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELV-----KIFVKIP------YPI--------RKRF---LRSF--FF 68 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEE-----EE---TT-------SS--------TSS-----HHH--HH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhcc-----ceeeeee------ccc--------cccc---chhH--HH
Confidence 444567899999999999999998776544433210 1111111 000 0000 1111 12
Q ss_pred HHHHHHHHhhcCCCEEEEcC--CCChHHHHHHhCCceEEEecchH
Q 039043 88 EPAIESVLRHLKPDFVFFDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
...+..++++.+||+|-+.. ..+....+-. ++|.+.......
T Consensus 69 ~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 69 MRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 35778888888999995444 5555544444 999997765544
No 138
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.67 E-value=1.9 Score=41.59 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=65.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEE-EEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLIT-FIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+-..+.|++.-+..+.++|+++ +.+|++++.+.+.+.++... . +. ++.++ .. . . . ..
T Consensus 5 i~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p---~-vd~vi~~~----~~----~--~---~-~~-- 64 (344)
T TIGR02201 5 IKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENP---D-INALYGLD----RK----K--A---K-AG-- 64 (344)
T ss_pred EEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCC---C-ccEEEEeC----hh----h--h---c-ch--
Confidence 3456789999999999999986 89999999999888777642 2 32 33332 00 0 0 0 00
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEE
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~ 125 (449)
..... .. -.+...+++.++|++|.-. ......++...|.|..+-
T Consensus 65 -~~~~~-~~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 65 -ERKLA-NQ-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred -HHHHH-HH-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 00000 11 1234556777999999766 666778889999998654
No 139
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.56 E-value=0.35 Score=36.53 Aligned_cols=82 Identities=9% Similarity=0.027 Sum_probs=52.8
Q ss_pred cCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHH-HHHH
Q 039043 341 HCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKE-IKEN 419 (449)
Q Consensus 341 HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~-~~~~ 419 (449)
+|-..-+.|++++|+|+|+-+. ......+ .=|...-.- -+.+++.++|..+++| +. .++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~~-----~~~~el~~~i~~ll~~------~~~~~~i 69 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIITY-----NDPEELAEKIEYLLEN------PEERRRI 69 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEEE-----CCHHHHHHHHHHHHCC------HHHHHHH
Confidence 4555688999999999998766 2222222 222222221 2789999999999998 54 4444
Q ss_pred HHHHHHHHHhcCcchHHHHHHH
Q 039043 420 HAKWREFLRSERLENSYLDGFV 441 (449)
Q Consensus 420 a~~l~~~~~~~~~~~~~~~~~~ 441 (449)
+++-.+.++..-+....++.|+
T Consensus 70 a~~a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 70 AKNARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4445555665666666666665
No 140
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.25 Score=45.50 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=69.1
Q ss_pred EEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccch--hhHHHHHHhhhcceeEeeecCCCCcccHHH
Q 039043 319 IHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQ--IINARLMGEELKVGVEVEKGDEDGLFTRDG 396 (449)
Q Consensus 319 ~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ--~~na~~v~~~~G~G~~~~~~~~~~~~~~~~ 396 (449)
++.+|-...++|-++++ .|--.|- .+-+++-.|||+|.+|-.+-| +..|.+=.++||+.+.+-.+ .+..
T Consensus 298 l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~------~aq~ 368 (412)
T COG4370 298 LWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP------EAQA 368 (412)
T ss_pred EEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC------chhh
Confidence 34455555667766666 5544332 234578899999999999988 66777778888888877764 3444
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 397 VCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 397 l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
-..+.+++|.| +++..++++=..+=....| ++..|.+++.
T Consensus 369 a~~~~q~ll~d------p~r~~air~nGqrRiGqaG---aa~rIAe~l~ 408 (412)
T COG4370 369 AAQAVQELLGD------PQRLTAIRHNGQRRIGQAG---AARRIAEELG 408 (412)
T ss_pred HHHHHHHHhcC------hHHHHHHHhcchhhccCcc---hHHHHHHHHH
Confidence 44455559999 8888777643333222233 4444444443
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.75 E-value=0.61 Score=46.97 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=72.4
Q ss_pred EEeccchhh---hhhcCCCccceec---cCCch-hHHHHHhhCCc----EeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 319 IHGGWVQQQ---LILKHPSVGCFVT---HCGSG-SLSEAMVNECQ----LVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 319 ~~~~~~pq~---~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
.+...+++. ++++.+++ |+. +=|+| ++.||+++|+| +|+--..+-- +.+ +-|..+++
T Consensus 339 ~l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-------~~l-~~gllVnP-- 406 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-------QEL-NGALLVNP-- 406 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-------HHh-CCcEEECC--
Confidence 344556664 46778888 876 34764 77799999999 6655444321 122 44666665
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
.++++++++|.++|+. .. ++-+++.+++.+.+. ..+...-++.+++.++
T Consensus 407 ----~d~~~lA~aI~~aL~~---~~-~er~~r~~~~~~~v~-~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ----YDIDGMADAIARALTM---PL-EEREERHRAMMDKLR-KNDVQRWREDFLSDLN 455 (456)
T ss_pred ----CCHHHHHHHHHHHHcC---CH-HHHHHHHHHHHHHHh-hCCHHHHHHHHHHHhh
Confidence 4899999999999984 11 456777777777766 4667777888887765
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.10 E-value=0.26 Score=43.24 Aligned_cols=107 Identities=20% Similarity=0.134 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|++.||+|+++.+...+.-....-.....++....... .+.-......... .- .+-..-.+
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~-~~~~~~~~~~v~G-------TP---aDcv~~al 83 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPG-HDPGGVEAYAVSG-------TP---ADCVKLAL 83 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-T-TCCSTTEEEEESS--------H---HHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEec-ccCCCCCEEEEcC-------cH---HHHHHHHH
Confidence 4678999998888999999999876665443111111555433200 0000000000111 11 11122355
Q ss_pred HHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEecch
Q 039043 92 ESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~~~ 129 (449)
..++.+.+||+||+.. +.+|..-|...|||-|.++...
T Consensus 84 ~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 84 DGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 6666666799999732 2344556667899999986644
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.91 E-value=1.9 Score=36.90 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=50.7
Q ss_pred hCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhh-cCC
Q 039043 22 ERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRH-LKP 100 (449)
Q Consensus 22 ~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~p 100 (449)
++||+|+|+|.......- -| ++.+.+..+... ... ..-...++-..+. ..+.....+.+|-++ +.|
T Consensus 1 q~gh~v~fl~~~~~~~~~--~G-----V~~~~y~~~~~~--~~~---~~~~~~~~e~~~~-rg~av~~a~~~L~~~Gf~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PG-----VRVVRYRPPRGP--TPG---THPYVRDFEAAVL-RGQAVARAARQLRAQGFVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CC-----cEEEEeCCCCCC--CCC---CCcccccHHHHHH-HHHHHHHHHHHHHHcCCCC
Confidence 479999999955544333 35 778877621110 000 0000011111111 122234445555443 479
Q ss_pred CEEEEcC-CCChHHHHHHh-CCceEEEec
Q 039043 101 DFVFFDF-THWLPPLARKF-GIKSVLYCI 127 (449)
Q Consensus 101 D~vI~D~-~~~~~~~A~~~-giP~v~~~~ 127 (449)
|+||+.. -..++-+-+.+ +.|.+.+.=
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 9999999 55666777777 899887643
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.70 E-value=3.6 Score=38.33 Aligned_cols=96 Identities=16% Similarity=0.049 Sum_probs=59.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCC--CEEEEEcCCccccccCCCCCCCCCEE-EEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAERG--HRISFLLPAKAITKFEPSNLHRNLIT-FIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~g~~~~~i~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+-..+.|++.-+..+.++|+++. .+|++++.+...+.++... . ++ +..++ ... ...
T Consensus 5 i~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p---~-id~v~~~~--------~~~-----~~~---- 63 (279)
T cd03789 5 IRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP---E-VDRVIVLP--------KKH-----GKL---- 63 (279)
T ss_pred EecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC---c-cCEEEEcC--------Ccc-----ccc----
Confidence 34568899999999999999974 8999999998888877642 1 32 22222 000 000
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceE
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSV 123 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v 123 (449)
.+. ....+...+++.++|+++.-. ......++...+++..
T Consensus 64 ~~~-----~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 64 GLG-----ARRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred chH-----HHHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 000 112344445666899998765 5444556666666654
No 145
>PLN02939 transferase, transferring glycosyl groups
Probab=92.70 E-value=3.3 Score=45.05 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=54.5
Q ss_pred CCeEEEeccchhh---hhhcCCCccceeccC---Cc-hhHHHHHhhCCcEecccccc--chhhH--HHHH-HhhhcceeE
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVG--DQIIN--ARLM-GEELKVGVE 382 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~G~G~~ 382 (449)
.++|.+..+.+.. .+++.+++ ||.-. |+ .+.+||+++|+|.|+....+ |--.. ...+ ++- +-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEE
Confidence 3578877777764 58999999 88642 33 47899999999999876533 21110 1111 223 45666
Q ss_pred eeecCCCCcccHHHHHHHHHHHhc
Q 039043 383 VEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++. .++++|.++|.+++.
T Consensus 913 f~~------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 913 FLT------PDEQGLNSALERAFN 930 (977)
T ss_pred ecC------CCHHHHHHHHHHHHH
Confidence 655 378889999988775
No 146
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.44 E-value=0.92 Score=46.40 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=65.0
Q ss_pred CeEEEeccch--h-hhhhcCCCccceeccC---CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 316 RGFIHGGWVQ--Q-QLILKHPSVGCFVTHC---GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 316 ~~~~~~~~~p--q-~~lL~~~~~~~~I~Hg---G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
..|.+.++.+ + ..++..+.+ +|.-+ |.++..||+.+|+|+| .......|++. .=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe--C---
Confidence 4788888877 4 468888888 88766 7789999999999999 33333444444 445444 2
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
+..+|.++|..+|++ .+.+..+...+-+.++...
T Consensus 474 ---d~~~l~~al~~~L~~--~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ---DISELLKALDYYLDN--LKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ---CHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhh
Confidence 789999999999998 2344555555555555444
No 147
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.18 E-value=5.6 Score=37.23 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=53.5
Q ss_pred CCeEEEeccch---hhhhhcCCCccceecc---CCchh-HHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQ---QQLILKHPSVGCFVTH---CGSGS-LSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~p---q~~lL~~~~~~~~I~H---gG~gs-~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
..++.+..+++ ...+++.+++ ++.- .|.|. +.||+++|+|+|..... .....+.+. +.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~-~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDG-ETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCC-CceE-ecCC-
Confidence 35777788888 2356777877 6666 35544 59999999999765543 222233332 3465 3332
Q ss_pred CCCcccHHHHHHHHHHHhcC
Q 039043 388 EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+.+++.+++..++++
T Consensus 327 ----~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 ----GDVEELADALEQLLED 342 (381)
T ss_pred ----CCHHHHHHHHHHHhcC
Confidence 2689999999999998
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.99 E-value=8.1 Score=37.04 Aligned_cols=97 Identities=18% Similarity=0.065 Sum_probs=63.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEE-EEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLIT-FIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+-..+.|++.-+..+.++|++. +.+|++++.+.+.+.++... . ++ +..++. . . . ...
T Consensus 5 i~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p---~-id~v~~~~~--------~-~---~----~~~ 64 (334)
T TIGR02195 5 IGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP---E-IRQAIDMPL--------G-H---G----ALE 64 (334)
T ss_pred EccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc---h-hceeeecCC--------c-c---c----chh
Confidence 3456789999999999999986 89999999988877776542 1 22 122220 0 0 0 000
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEE
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVL 124 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~ 124 (449)
. . ....+...+++.++|++|.-. ..-...++...|+|.-+
T Consensus 65 ~-~-----~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 65 L-T-----ERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred h-h-----HHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 0 112445567777999999866 65666777888888754
No 149
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.76 E-value=13 Score=35.96 Aligned_cols=98 Identities=11% Similarity=0.188 Sum_probs=61.0
Q ss_pred CeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCe-EEEec--cchh-hh
Q 039043 256 KSLIFCAFGSECV---LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRG-FIHGG--WVQQ-QL 328 (449)
Q Consensus 256 k~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~-~~~~~--~~pq-~~ 328 (449)
++.|.+..|+... .+.+.+.+++..|...+.++++.-+....+. .....+.......+ +-+.+ .+.+ .+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~----~~~~~i~~~~~~~~~~~l~g~~sL~el~a 258 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDL----ACVNEIAQGCQTPPVTALAGKTTFPELGA 258 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHH----HHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence 4577778777543 6678899999998777777666544321110 00011111111112 22223 3455 47
Q ss_pred hhcCCCccceeccCCchhHHHHHhhCCcEecc
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 360 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 360 (449)
+++++++ ||+. -.|-++=|.+.|+|.|++
T Consensus 259 li~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 259 LIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 9999999 9987 678899999999999875
No 150
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.57 E-value=0.91 Score=45.85 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=63.7
Q ss_pred EEeccchhh---hhhcCCCccceec---cCCch-hHHHHHhhCCc----Eecccccc--chhhHHHHHHhhhcceeEeee
Q 039043 319 IHGGWVQQQ---LILKHPSVGCFVT---HCGSG-SLSEAMVNECQ----LVLLPNVG--DQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 319 ~~~~~~pq~---~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~ 385 (449)
++..++++. ++++.+++ ||. +-|+| ++.||+++|+| +|+--..+ ++ . .-|..++.
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~-~~g~lv~p 411 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------L-SGALLVNP 411 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------c-CCCEEECC
Confidence 344677764 46888888 774 44654 67899999999 44432221 22 2 34666665
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
. +.++++++|.+++++. + ++.+++.++..+.+. .-+..+-++.+++.+
T Consensus 412 ~------d~~~la~ai~~~l~~~--~--~e~~~~~~~~~~~v~-~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 Y------DIDEVADAIHRALTMP--L--EERRERHRKLREYVR-THDVQAWANSFLDDL 459 (460)
T ss_pred C------CHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHH-hCCHHHHHHHHHHhh
Confidence 3 8899999999999861 1 233334444444443 455666666666554
No 151
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=90.35 E-value=11 Score=36.55 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=64.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEEEE-EecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLITFI-PVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~~~-~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+-..+.|++.-+..+.+.|+++ +.+|++++.+.+.+.++... . ++-+ .++ .. .. ..
T Consensus 6 i~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P---~-vd~vi~~~--------~~----~~----~~- 64 (348)
T PRK10916 6 IGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP---E-VNEAIPMP--------LG----HG----AL- 64 (348)
T ss_pred EccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC---c-cCEEEecc--------cc----cc----hh-
Confidence 3456789999999999999986 89999999998888877643 1 3221 121 00 00 00
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEE
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVL 124 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~ 124 (449)
.+. ....+...+++.++|++|.=. ..-...++...|+|.-+
T Consensus 65 ~~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 65 EIG-----ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhH-----HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 112345567777999998755 65666778888988764
No 152
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=88.67 E-value=3.1 Score=39.55 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=83.9
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHH-h--CCCCEEEEEcCCCCCCccccCCChhHHH----hcCCCeEE-Eeccchh---
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFE-L--SGLPFLVALKPPVGHDTIESALPEGFEE----RVKGRGFI-HGGWVQQ--- 326 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~-~--~~~~~i~~~~~~~~~~~~~~~lp~~~~~----~~~~~~~~-~~~~~pq--- 326 (449)
.+.|=.|.....+..+++.+ ++++ . .+.++++-++-+.+.+ ..-+.+.. .....++. +.+++|.
T Consensus 185 ~ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg~~n~----~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eY 259 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYGANNQ----AYIQQVIQAGKELFGAENFQILTEFMPFDEY 259 (360)
T ss_pred ceEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCCCchH----HHHHHHHHHHHHhcCccceeEhhhhCCHHHH
Confidence 44455566665555554443 2332 2 3456777766653210 01111221 12234664 5678874
Q ss_pred hhhhcCCCccceecc--CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 327 QLILKHPSVGCFVTH--CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 327 ~~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
.++|+.|+++.|.|. =|.|+++-+|..|+|++.-- +-+.+-. +.+. |+=+....++ ++...|+++=+++
T Consensus 260 l~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~~-l~~~-~ipVlf~~d~----L~~~~v~ea~rql 330 (360)
T PF07429_consen 260 LALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQD-LKEQ-GIPVLFYGDE----LDEALVREAQRQL 330 (360)
T ss_pred HHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHHH-HHhC-CCeEEecccc----CCHHHHHHHHHHH
Confidence 579999999777764 58999999999999998642 3344433 3445 7776666565 9999999998887
Q ss_pred hcC
Q 039043 405 IDD 407 (449)
Q Consensus 405 l~~ 407 (449)
.+-
T Consensus 331 ~~~ 333 (360)
T PF07429_consen 331 ANV 333 (360)
T ss_pred hhC
Confidence 753
No 153
>PRK14099 glycogen synthase; Provisional
Probab=88.06 E-value=10 Score=38.68 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=46.4
Q ss_pred EEeccchhh-hhh-cCCCccceec---cCCch-hHHHHHhhCCcEecccccc--chhhHHH-H--HHhhhcceeEeeecC
Q 039043 319 IHGGWVQQQ-LIL-KHPSVGCFVT---HCGSG-SLSEAMVNECQLVLLPNVG--DQIINAR-L--MGEELKVGVEVEKGD 387 (449)
Q Consensus 319 ~~~~~~pq~-~lL-~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~--DQ~~na~-~--v~~~~G~G~~~~~~~ 387 (449)
.+.+|-... .++ +.+++ ||. +=|.| +.+||+++|+|.|+....+ |--.... . .+.. +.|..++..
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~~- 429 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSPV- 429 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCCC-
Confidence 455664333 234 45777 775 34544 6789999997766654322 2111100 0 0111 357677654
Q ss_pred CCCcccHHHHHHHHHH---HhcC
Q 039043 388 EDGLFTRDGVCKAVKA---VIDD 407 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~---ll~~ 407 (449)
++++|.++|.+ +++|
T Consensus 430 -----d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 430 -----TADALAAALRKTAALFAD 447 (485)
T ss_pred -----CHHHHHHHHHHHHHHhcC
Confidence 88999999987 6666
No 154
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=86.33 E-value=4.9 Score=37.68 Aligned_cols=134 Identities=18% Similarity=0.224 Sum_probs=78.6
Q ss_pred EEEEeCCcccCCHHHHHHHHHHH-HhCC--CCEEEEEcCCCCCCccccCCChhHHH---h-cCCCeE-EEeccch---hh
Q 039043 259 IFCAFGSECVLNKEQFQELVLGF-ELSG--LPFLVALKPPVGHDTIESALPEGFEE---R-VKGRGF-IHGGWVQ---QQ 327 (449)
Q Consensus 259 v~vs~GS~~~~~~~~~~~~~~al-~~~~--~~~i~~~~~~~~~~~~~~~lp~~~~~---~-~~~~~~-~~~~~~p---q~ 327 (449)
+-|=.|.....+.++++. +.++ +..+ .++++-++-+...+ ..-+.+.. + ...+++ .+..++| +.
T Consensus 147 ~tIlvGNSgd~SN~Hie~-L~~l~~~~~~~v~ii~PlsYp~gn~----~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEA-LRALHQQFGDNVKIIVPMGYPANNQ----AYIEEVRQAGLALFGAENFQILTEKLPFDDYL 221 (322)
T ss_pred eEEEEeCCCCCcccHHHH-HHHHHHHhCCCeEEEEECCcCCCCH----HHHHHHHHHHHHhcCcccEEehhhhCCHHHHH
Confidence 444456666555555544 3333 3344 45666666531111 01111211 1 122455 4666776 46
Q ss_pred hhhcCCCccceecc--CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 328 LILKHPSVGCFVTH--CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 328 ~lL~~~~~~~~I~H--gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
++|+.|+++.|+|+ =|.|+++-.++.|||+++-- +-+.|.... +. |+-+-.+.+. ++...+.++=+++.
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~-e~-gv~Vlf~~d~----L~~~~v~e~~rql~ 292 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT-EQ-GLPVLFTGDD----LDEDIVREAQRQLA 292 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH-hC-CCeEEecCCc----ccHHHHHHHHHHHH
Confidence 79999999888886 48999999999999998753 223333333 34 7776556554 88888877755544
Q ss_pred c
Q 039043 406 D 406 (449)
Q Consensus 406 ~ 406 (449)
.
T Consensus 293 ~ 293 (322)
T PRK02797 293 S 293 (322)
T ss_pred h
Confidence 3
No 155
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=86.13 E-value=2.4 Score=38.48 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHH
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEP 89 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (449)
.--+.+|++.|+ .+++|+++.++..+.-+...-....+++...+. ........ ...+-.+-
T Consensus 13 a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~--------~~~~av~G----------TPaDCV~l 73 (252)
T COG0496 13 APGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVD--------NGAYAVNG----------TPADCVIL 73 (252)
T ss_pred CHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEec--------cceEEecC----------ChHHHHHH
Confidence 334567888888 999999999998776654431100013322222 00000001 11111234
Q ss_pred HHHHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~~~ 129 (449)
.+..++++.+||+||+.. +.+|..=|..+|||.|.++...
T Consensus 74 al~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 GLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 678888888999999732 2223344557899999886654
No 156
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=85.86 E-value=5.6 Score=36.87 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=35.5
Q ss_pred CeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEecccc
Q 039043 316 RGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN 362 (449)
Q Consensus 316 ~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~ 362 (449)
..+.+.+-++-.+++++++. +||-.+ ++-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 34556667788899999999 888854 467799999999999874
No 157
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.29 E-value=4 Score=44.23 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=67.7
Q ss_pred ccchhh---hhhcCCCccceeccC---Cch-hHHHHHhhCCc---EeccccccchhhHHHHHHhhhc-ceeEeeecCCCC
Q 039043 322 GWVQQQ---LILKHPSVGCFVTHC---GSG-SLSEAMVNECQ---LVLLPNVGDQIINARLMGEELK-VGVEVEKGDEDG 390 (449)
Q Consensus 322 ~~~pq~---~lL~~~~~~~~I~Hg---G~g-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~ 390 (449)
.++|.. ++++.+++ |+.-. |+| +..|++++|+| +++++-.. ..+. .+ | -|+.+++
T Consensus 362 ~~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~---~l-~~~allVnP----- 427 (797)
T PLN03063 362 CSVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ---SL-GAGALLVNP----- 427 (797)
T ss_pred CCCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh---hh-cCCeEEECC-----
Confidence 345543 67888998 88554 876 66799999999 44444221 1111 13 4 5777776
Q ss_pred cccHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 391 LFTRDGVCKAVKAVID-DDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.+.++++++|.++|+ +. ++-+++.+++.+.+. ......-++.+++.+++
T Consensus 428 -~D~~~lA~AI~~aL~m~~-----~er~~r~~~~~~~v~-~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 428 -WNITEVSSAIKEALNMSD-----EERETRHRHNFQYVK-THSAQKWADDFMSELND 477 (797)
T ss_pred -CCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHhhh-hCCHHHHHHHHHHHHHH
Confidence 489999999999999 41 345555666666665 34566667777766654
No 158
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=84.87 E-value=2.5 Score=36.14 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=30.1
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcC-CCChHHHH----HH-h-CCceEEEecc
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDF-THWLPPLA----RK-F-GIKSVLYCII 128 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A----~~-~-giP~v~~~~~ 128 (449)
....+.+.++|++.+||+|||.+ +.....++ +. + ++|++.+.+-
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 34567899999999999999999 54443122 22 3 5787766554
No 159
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.56 E-value=38 Score=32.35 Aligned_cols=118 Identities=13% Similarity=-0.013 Sum_probs=71.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
-.|-.||-=+|.-=|..|++.|.+|.+++.-.....-+=.. +|+ |+++.+|....- ............
T Consensus 19 VLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~-hpr-I~ih~m~~l~~~----------~~~p~~~~l~lK 86 (444)
T KOG2941|consen 19 VLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN-HPR-IRIHGMPNLPFL----------QGGPRVLFLPLK 86 (444)
T ss_pred EecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc-CCc-eEEEeCCCCccc----------CCCchhhhhHHH
Confidence 34567787888888999999999999998765543322222 566 999988722110 111112223333
Q ss_pred HHhhcHHHHHHHHhhcCCCEEEEcC--CCChHHHHHHh----CCceEEEecchHHH
Q 039043 83 AMDLTEPAIESVLRHLKPDFVFFDF--THWLPPLARKF----GIKSVLYCIISPAT 132 (449)
Q Consensus 83 ~~~~~~~~~~~ll~~~~pD~vI~D~--~~~~~~~A~~~----giP~v~~~~~~~~~ 132 (449)
.+.....-+..+....++|.++.-. +.....+|..+ |..+++=+....+.
T Consensus 87 vf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 87 VFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 3333334445555556889887654 77776666544 77777766655543
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.17 E-value=4.4 Score=40.52 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=76.8
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeE-EEeccch-h-hhhh
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFEL-SGLPFLVALKPPVGHDTIESALPEGFEERVKGRGF-IHGGWVQ-Q-QLIL 330 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~~~~p-q-~~lL 330 (449)
.+.++++| +.+.+..+....+. .+..+-+..+.. ....+.....-.|+ ....+.+ . .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te---------~s~kL~~L~~y~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE---------MSSKLMSLDKYDNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc---------ccHHHHHHHhcCCcEEECCcChHHHHHHH
Confidence 34477776 24445555554443 456666543322 11333221112344 5666677 3 4799
Q ss_pred cCCCccceeccCCc--hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 331 KHPSVGCFVTHCGS--GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 331 ~~~~~~~~I~HgG~--gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
..|++=+-|.||.- .++.||+.+|+|+++.=...... ..+.+ |-.+... +.+++.++|.++|++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~~------~~~~m~~~i~~lL~d 411 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEHN------EVDQLISKLKDLLND 411 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecCC------CHHHHHHHHHHHhcC
Confidence 99999888999774 78999999999999877542221 11111 3334443 789999999999998
No 161
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=84.03 E-value=3.3 Score=35.50 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHHH-HhC-CCEEEEEcCCccccc--cCCCCC--CCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcH
Q 039043 4 WFAMGHLTPFLHIANKL-AER-GHRISFLLPAKAITK--FEPSNL--HRNLITFIPVSVPRVDGLPPGAETTNDVPFPLH 77 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L-~~r-Gh~Vt~~~~~~~~~~--~~~~g~--~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 77 (449)
.++=||..-|+.|.+.+ .++ .++..+++..+.... +++... ... .++..+| .. ..+.....
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~-~~~~~~~--------r~----r~v~q~~~ 71 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKR-HKILEIP--------RA----REVGQSYL 71 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcccc-ceeeccc--------eE----EEechhhH
Confidence 46679999999999999 334 455555555443222 111100 000 1233333 00 00111111
Q ss_pred HHHHHHHhhcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHh------CCceEEEec
Q 039043 78 PLLMTAMDLTEPAIESVLRHLKPDFVFFDF---THWLPPLARKF------GIKSVLYCI 127 (449)
Q Consensus 78 ~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~------giP~v~~~~ 127 (449)
........... ....++.+.+||+||+.- +.....+|+.+ |.++|.+-+
T Consensus 72 ~~~~~~l~~~~-~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTLRAFL-QSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHHHHHH-HHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 11122221122 233445666899999975 67778899999 999987633
No 162
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.48 E-value=13 Score=33.93 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=56.1
Q ss_pred EEEEEeCCccc--CCHHHHHH----HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEe-----ccchh
Q 039043 258 LIFCAFGSECV--LNKEQFQE----LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHG-----GWVQQ 326 (449)
Q Consensus 258 ~v~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~-----~~~pq 326 (449)
+..+-.|+... ++.+.... +.+.+++.|.+++++.+....+. +-.-+.....+.-+++. ++=|+
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~-----~~s~l~~~l~s~~~i~w~~~d~g~NPY 238 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDT-----VKSILKNNLNSSPGIVWNNEDTGYNPY 238 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHH-----HHHHHHhccccCceeEeCCCCCCCCch
Confidence 33333455554 33333322 55557888999999987653211 11111111112222222 44588
Q ss_pred hhhhcCCCccceeccCCc-hhHHHHHhhCCcEecc
Q 039043 327 QLILKHPSVGCFVTHCGS-GSLSEAMVNECQLVLL 360 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~-gs~~eal~~GvP~l~~ 360 (449)
.+.|+.++. +|.-... |.++||+..|+|+.++
T Consensus 239 ~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 239 IDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred HHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 899999888 7766664 8888999999999653
No 163
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=2.3 Score=41.32 Aligned_cols=94 Identities=24% Similarity=0.337 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTA 83 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (449)
-|+.|--.=++.++..|+++| +|.|++.+.....++- +...+. ++. .+ +.-.
T Consensus 101 dPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl--------RA~RL~------~~~-----~~--------l~l~ 152 (456)
T COG1066 101 DPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL--------RADRLG------LPT-----NN--------LYLL 152 (456)
T ss_pred CCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH--------HHHHhC------CCc-----cc--------eEEe
Confidence 378888899999999999999 9999999987655431 111111 000 00 0111
Q ss_pred HhhcHHHHHHHHhhcCCCEEEEcC--CCCh--------------------HHHHHHhCCceEEE
Q 039043 84 MDLTEPAIESVLRHLKPDFVFFDF--THWL--------------------PPLARKFGIKSVLY 125 (449)
Q Consensus 84 ~~~~~~~~~~ll~~~~pD~vI~D~--~~~~--------------------~~~A~~~giP~v~~ 125 (449)
.+...+.+.+.+++.+||+||.|+ +.+. ..+|+..||+++++
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 223456777888889999999997 3221 35778888888765
No 164
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.95 E-value=17 Score=30.38 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=72.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.|-|-+||.. +....+++...|+..|..+-+.+-+- ...|+.+. .++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa-------HR~p~~l~-----------~~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA-------HRTPERLL-----------EFVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T-------TTSHHHHH-----------HHHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec-------cCCHHHHH-----------HHHHHhcc-CCCEE--
Confidence 4556677765 77888889999999887765554332 22333222 11111111 23445
Q ss_pred eeccCCchhHHH---HHhhCCcEeccccccchhhHHH---HHHhhh-cceeEeeecCCCCcccHHHHHHHHHHHhcCCCc
Q 039043 338 FVTHCGSGSLSE---AMVNECQLVLLPNVGDQIINAR---LMGEEL-KVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHS 410 (449)
Q Consensus 338 ~I~HgG~gs~~e---al~~GvP~l~~P~~~DQ~~na~---~v~~~~-G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 410 (449)
||+=.|...-+- |-..-+|+|.+|...++..... .+.++. |+++..-.- +...+...++..|-.+ .+
T Consensus 59 iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~A~~ILa~-~d--- 132 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALLAARILAL-KD--- 132 (150)
T ss_dssp EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHHHHHHHHT-T----
T ss_pred EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHHHHHHHhc-CC---
Confidence 888777643332 2234799999998766432211 222221 444322220 0014666666666553 55
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 039043 411 EVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 411 ~~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+..++++++
T Consensus 133 ---~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 133 ---PELREKLRAYREKMKE 148 (150)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHc
Confidence 7888888888887764
No 165
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=82.30 E-value=4.2 Score=37.38 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcccc-ccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAKAIT-KFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-..||+.|.++||+|+..+...... .+.+.| ..-+... .+ -...+
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-----~~~v~~g-----~l------------------------~~~~l 57 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-----ALTVHTG-----AL------------------------DPQEL 57 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccC-----CceEEEC-----CC------------------------CHHHH
Confidence 6789999999999999888776543 333332 1111110 10 12347
Q ss_pred HHHHhhcCCCEEEEcC-C------CChHHHHHHhCCceEEE
Q 039043 92 ESVLRHLKPDFVFFDF-T------HWLPPLARKFGIKSVLY 125 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~-~------~~~~~~A~~~giP~v~~ 125 (449)
.+++++.++|+||--. . .-+..+|+.+|||++.+
T Consensus 58 ~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 58 REFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 7888999999888533 2 22467899999999986
No 166
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.73 E-value=8.4 Score=36.72 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccC
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFE 40 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (449)
||-|-..-..++|-.|++.|.+|.+++++..+..-.
T Consensus 11 GGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d 46 (322)
T COG0003 11 GGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGD 46 (322)
T ss_pred CcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHh
Confidence 456677778889999999999988888887765543
No 167
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.48 E-value=6.4 Score=40.45 Aligned_cols=78 Identities=9% Similarity=-0.043 Sum_probs=49.1
Q ss_pred hhhhhhcCCCccceec---cCCch-hHHHHHhhCCcEecccccc-chhhHHHHHHhhhc--ceeEeeecC-CCCcccHHH
Q 039043 325 QQQLILKHPSVGCFVT---HCGSG-SLSEAMVNECQLVLLPNVG-DQIINARLMGEELK--VGVEVEKGD-EDGLFTRDG 396 (449)
Q Consensus 325 pq~~lL~~~~~~~~I~---HgG~g-s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G--~G~~~~~~~-~~~~~~~~~ 396 (449)
+..+++..|++ +|. +=|+| +..||+++|+|+|+....+ ..... .+... + .|+.+...+ .+-.-+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~-~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIED-PESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhcc-CCCceEEEecCCccchHHHHHH
Confidence 35678888888 776 45654 8899999999999987642 22221 12211 2 466666321 011135678
Q ss_pred HHHHHHHHhcC
Q 039043 397 VCKAVKAVIDD 407 (449)
Q Consensus 397 l~~~i~~ll~~ 407 (449)
|++++.++++.
T Consensus 542 La~~m~~~~~~ 552 (590)
T cd03793 542 LTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHhCC
Confidence 88888888864
No 168
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=78.87 E-value=6.9 Score=34.04 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
.++.|.+ -..||+++..+|++||++..+.
T Consensus 25 N~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 25 NRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp ES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 3444443 3678999999999999999885
No 169
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=78.46 E-value=40 Score=29.72 Aligned_cols=147 Identities=9% Similarity=0.064 Sum_probs=79.5
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
+|.++.|..|.+. ...+..|...+..+.++-.. +...+........+..........-+..++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~ad 72 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDAF 72 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC----------CCHHHHHHHhCCCEEEEecCCChhhcCCce
Confidence 3568888877765 44556666677766555321 112222222223454444444456677888
Q ss_pred ccceeccCCchhHHHHHh----hCCcEeccccccchhhH-----HHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 335 VGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIIN-----ARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
+ +|.--+.-.+++.++ .++++-+ .|.+.. -..+.+- ++-+.+..+..+|.+ ...|++.|++++
T Consensus 73 l--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~l-a~~lr~~ie~~~ 144 (202)
T PRK06718 73 L--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKL-AKKIRDELEALY 144 (202)
T ss_pred E--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHH-HHHHHHHHHHHc
Confidence 8 888888777776655 4444433 343322 2223333 333333332212223 255888888877
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHhc
Q 039043 406 DDDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 406 ~~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
.. ....+-+.+..+++.++..
T Consensus 145 ~~----~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 145 DE----SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred ch----hHHHHHHHHHHHHHHHHHh
Confidence 42 2356777777777777753
No 170
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=77.12 E-value=5.3 Score=42.97 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEEeccchhh---hhhcCCCccceecc---CCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 318 FIHGGWVQQQ---LILKHPSVGCFVTH---CGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 318 ~~~~~~~pq~---~lL~~~~~~~~I~H---gG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
+++.+++++. ++++.+++ |+.- -|+ .++.|++++|+|-...|+..+--. -+.++ .-|+.+++.
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G---~~~~l-~~~llv~P~---- 413 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG---AAAEL-AEALLVNPN---- 413 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccc---hhHHh-CcCeEECCC----
Confidence 3455677775 47778888 7764 355 477899999775222222211111 11123 336677764
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
++++++++|.++|+.. . ++-+++.+++.+.+. ..+...-++.+++.+++.
T Consensus 414 --d~~~la~ai~~~l~~~---~-~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 --DIEGIAAAIKRALEMP---E-EEQRERMQAMQERLR-RYDVHKWASDFLDELREA 463 (726)
T ss_pred --CHHHHHHHHHHHHcCC---H-HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 8999999999999840 0 355556666666654 556777777777776654
No 171
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=76.83 E-value=12 Score=31.70 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTA 83 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (449)
.|+.|-..-.+.+++.|.+.|++|-=+.++..++-=.+.| |+.+++.......+........... .+ ......
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~G-----F~Ivdl~tg~~~~la~~~~~~~rvG-kY-~V~v~~ 85 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIG-----FKIVDLATGEEGILARVGFSRPRVG-KY-GVNVEG 85 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEee-----eEEEEccCCceEEEEEcCCCCcccc-eE-EeeHHH
Confidence 5888999999999999999999988777777666656656 7777775111001111111111111 11 111222
Q ss_pred Hh-hcHHHHHHHHhhcCCCEEEEcC
Q 039043 84 MD-LTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 84 ~~-~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
++ -+.++++..+++ .|+||.|-
T Consensus 86 le~i~~~al~rA~~~--aDvIIIDE 108 (179)
T COG1618 86 LEEIAIPALRRALEE--ADVIIIDE 108 (179)
T ss_pred HHHHhHHHHHHHhhc--CCEEEEec
Confidence 22 355666666665 69999995
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=76.35 E-value=7.3 Score=37.19 Aligned_cols=131 Identities=13% Similarity=0.069 Sum_probs=74.9
Q ss_pred eEEE-EEeCCcc--cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEec--cchh-hhhh
Q 039043 257 SLIF-CAFGSEC--VLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGG--WVQQ-QLIL 330 (449)
Q Consensus 257 ~~v~-vs~GS~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--~~pq-~~lL 330 (449)
+.|. +-.||.. ..+.+.+.++++.+...+.++++..+.... ....+.+... .+++.+.+ .+.+ ..++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-----~~~~~~i~~~--~~~~~l~g~~sL~elaali 251 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-----EQRAKRLAEG--FPYVEVLPKLSLEQVARVL 251 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----HHHHHHHHcc--CCcceecCCCCHHHHHHHH
Confidence 3544 4444432 266788999999987667776654454311 1111111111 11232322 3555 4699
Q ss_pred cCCCccceeccCCchhHHHHHhhCCcEeccccccchhh------HHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQII------NARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~------na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+++++ +|+. -.|.++=|.+.|+|+|++=-..+... |...+. .++ -...+ ++++++.++++++
T Consensus 252 ~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~---~~~--~cm~~----I~~e~V~~~~~~~ 319 (322)
T PRK10964 252 AGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACR---SPG--KSMAD----LSAETVFQKLETL 319 (322)
T ss_pred HhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeec---CCC--ccccc----CCHHHHHHHHHHH
Confidence 99999 9987 57899999999999998632222111 111111 011 11233 8999999999988
Q ss_pred hc
Q 039043 405 ID 406 (449)
Q Consensus 405 l~ 406 (449)
|+
T Consensus 320 l~ 321 (322)
T PRK10964 320 IS 321 (322)
T ss_pred hh
Confidence 75
No 173
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=76.13 E-value=8.3 Score=35.32 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=56.0
Q ss_pred HHHHHHHHhCC-CEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHH
Q 039043 14 LHIANKLAERG-HRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIE 92 (449)
Q Consensus 14 l~la~~L~~rG-h~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (449)
-..++.|.+.+ .+|-+.++....+.+.+.......+-+..+|.+.. ..+. + ...++...-.+..+.=.
T Consensus 119 ~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~---~~g~------~--~~~iia~~GPfs~e~n~ 187 (249)
T PF02571_consen 119 EEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPES---ALGF------P--PKNIIAMQGPFSKELNR 187 (249)
T ss_pred HHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccc---cCCC------C--hhhEEEEeCCCCHHHHH
Confidence 34566676666 67777776666555533111111266666663322 1110 0 00111111111233456
Q ss_pred HHHhhcCCCEEEEc-C-CCCh---HHHHHHhCCceEEE
Q 039043 93 SVLRHLKPDFVFFD-F-THWL---PPLARKFGIKSVLY 125 (449)
Q Consensus 93 ~ll~~~~pD~vI~D-~-~~~~---~~~A~~~giP~v~~ 125 (449)
+++++++.|+||+= + ..+. ..+|+.+|||+|++
T Consensus 188 al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 188 ALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 78999999999984 4 3322 68999999999976
No 174
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=75.86 E-value=6.1 Score=38.54 Aligned_cols=109 Identities=10% Similarity=0.156 Sum_probs=63.5
Q ss_pred CeEEE-eccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC---CCCc
Q 039043 316 RGFIH-GGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD---EDGL 391 (449)
Q Consensus 316 ~~~~~-~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~---~~~~ 391 (449)
.+++. .+..+..++|..+++ +||-- ...+.|.++.++|+|....-.|..... . |.- .+..+ +...
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~--~~~~~~~pg~~~ 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFY--FDYEEDLPGPIV 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBS--S-TTTSSSS-EE
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCC--CchHhhCCCcee
Confidence 45654 445567899999999 99997 457889999999999877655554221 1 222 22111 0112
Q ss_pred ccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH---hcCcchHHHHHH
Q 039043 392 FTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR---SERLENSYLDGF 440 (449)
Q Consensus 392 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~---~~~~~~~~~~~~ 440 (449)
-+.++|.++|++++++. ..++++.+++.+.+. ++..+.+.++.|
T Consensus 321 ~~~~eL~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 321 YNFEELIEAIENIIENP-----DEYKEKREKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp SSHHHHHHHHTTHHHHH-----HHTHHHHHHHHHHHSTT--S-HHHHHHHHH
T ss_pred CCHHHHHHHHHhhhhCC-----HHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 47799999999998861 345666777777764 334444444444
No 175
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=75.08 E-value=7 Score=35.44 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHH
Q 039043 15 HIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESV 94 (449)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (449)
.+++.+.+.|-+|-+.+..+....+.+.-.+.. +-+..+|.+. .+. ..+.. ..+ ....+...-.+..+.=..+
T Consensus 119 ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~~-~~~Rvlp~~~--~~~-~~~~~-~~p--~~~Iia~~GPfs~~~n~al 191 (257)
T COG2099 119 EAAEAAKQLGRRVFLTTGRQNLAHFVAADAHSH-VLARVLPPPD--VLA-KCEDL-GVP--PARIIAMRGPFSEEDNKAL 191 (257)
T ss_pred HHHHHHhccCCcEEEecCccchHHHhcCcccce-EEEEEcCchH--HHH-HHHhc-CCC--hhhEEEecCCcChHHHHHH
Confidence 345556666767777777666666555432323 5566665211 100 00000 000 0001111111233445678
Q ss_pred HhhcCCCEEEEcC--CCCh----HHHHHHhCCceEEE
Q 039043 95 LRHLKPDFVFFDF--THWL----PPLARKFGIKSVLY 125 (449)
Q Consensus 95 l~~~~pD~vI~D~--~~~~----~~~A~~~giP~v~~ 125 (449)
+++++.|+||+-. ..++ ..+|+.+|||+|.+
T Consensus 192 l~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 192 LEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 8999999999854 3222 68999999999976
No 176
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=73.70 E-value=6 Score=35.98 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=54.3
Q ss_pred CCCeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEec--cchh-h
Q 039043 254 KSKSLIFCAFGSECV---LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGG--WVQQ-Q 327 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--~~pq-~ 327 (449)
.+++.|.+..|+... .+.+.+..++..|.+.+.++++..+..+.+ ...-+.+........+.+.. -+.+ .
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~e~~ 178 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE----KEIADQIAAGLQNPVINLAGKTSLRELA 178 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH----HHHHHHHHTTHTTTTEEETTTS-HHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH----HHHHHHHHHhcccceEeecCCCCHHHHH
Confidence 345677777777553 667889999999987775655444332100 00000111111112344433 2344 4
Q ss_pred hhhcCCCccceeccCCchhHHHHHhhCCcEecc
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL 360 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~ 360 (449)
.+++++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 179 ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 179 ALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 78999999 8887 568899999999999998
No 177
>PRK09620 hypothetical protein; Provisional
Probab=72.40 E-value=20 Score=32.41 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCC
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 33 (449)
+..+.|-+- ..||++|.++|++|+++...
T Consensus 24 tN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 24 TNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred cCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 344555554 67899999999999999754
No 178
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=71.87 E-value=18 Score=33.10 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|.+. |+|+++.+..-+.-+...-....++++..+. ++ ...... .-..... -.+
T Consensus 15 Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~----~~----~~~v~G-------TPaDcV~---~gl 75 (250)
T PRK00346 15 GIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVD----NG----FYAVDG-------TPTDCVH---LAL 75 (250)
T ss_pred hHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEec----CC----eEEECC-------cHHHHHH---HHH
Confidence 467889999988 7999999887665554431111114444332 10 000001 1112221 123
Q ss_pred HHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEec
Q 039043 92 ESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~ 127 (449)
..++. .+||+||+.. +.+|..-|..+|||.+.++.
T Consensus 76 ~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 76 NGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred Hhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 33443 3899999732 23344555678999998865
No 179
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=71.43 E-value=68 Score=27.85 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCEEEEEcCCccccccCCC--CCCCCCEEEEEec
Q 039043 15 HIANKLAERGHRISFLLPAKAITKFEPS--NLHRNLITFIPVS 55 (449)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~--g~~~~~i~~~~~p 55 (449)
.|+..|+++||+||++|.....+.-... | ++...+|
T Consensus 25 ~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~g-----v~l~~i~ 62 (185)
T PF09314_consen 25 ELAPRLVSKGIDVTVYCRSDYYPYKEFEYNG-----VRLVYIP 62 (185)
T ss_pred HHHHHHhcCCceEEEEEccCCCCCCCcccCC-----eEEEEeC
Confidence 4667777889999999987655332222 4 7788887
No 180
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.26 E-value=28 Score=34.82 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+++++.+||+||++. ....+|+++|+|++.+
T Consensus 361 ~el~~~i~~~~pdliig~~--~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNS--HGRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhccCCCEEEECc--hhHHHHHhcCCCEEEe
Confidence 5677788888999999997 2357888999999864
No 181
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=70.85 E-value=35 Score=31.16 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|++.| +|+++.+...+.-+...-.....+++..++.. ++. ....... .-..... -.+
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~--~~~--~~~~v~G-------TPaDcv~---~gl 79 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVK--NGA--HIYAVDG-------TPTDCVI---LGI 79 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccC--CCc--cEEEEcC-------cHHHHHH---HHH
Confidence 4678899999988 89999988877665443111111555554310 000 0000001 1112211 123
Q ss_pred HHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEec
Q 039043 92 ESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~ 127 (449)
..++ ..+||+||+.. +.+|..-|..+|||.+.++.
T Consensus 80 ~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 80 NELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 3333 24699999732 23345556678999998865
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.73 E-value=64 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEecccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P~ 362 (449)
.+.+ +++|+|-| .+.+|...++|||++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455 89998866 56699999999999863
No 183
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=70.70 E-value=23 Score=32.67 Aligned_cols=30 Identities=7% Similarity=0.089 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
--+.+|+++|.+.| +|+++.+..-+.-+..
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ 43 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPKSATGL 43 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCCccccc
Confidence 45678999998887 7999988876655543
No 184
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=69.96 E-value=27 Score=32.04 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
-+.+|+++|.+.| +|+++.+...+.-...
T Consensus 20 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ 48 (257)
T PRK13932 20 GIHVLAASMKKIG-RVTVVAPAEPHSGMSH 48 (257)
T ss_pred HHHHHHHHHHhCC-CEEEEcCCCCCCCCcc
Confidence 4678899998888 7999988876655543
No 185
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.89 E-value=11 Score=32.81 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCEEEEEcCC-ccccccCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 5 FAMGHLTPFLHIANKLAER--GHRISFLLPA-KAITKFEPS-NLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~-~~~~~~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
.+.|-++-...|+++|.++ |+.|.+-+.- ...+.+.+. + +. +....+|+ |
T Consensus 29 ~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~--~~-v~~~~~P~---D-------------------- 82 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP--DR-VDVQYLPL---D-------------------- 82 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G--GG--SEEE------S--------------------
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC--CC-eEEEEeCc---c--------------------
Confidence 4568889999999999987 8888777753 333333222 1 00 33333441 1
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEE-EcC-CCCh-HHHHHHhCCceEEEec
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVF-FDF-THWL-PPLARKFGIKSVLYCI 127 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI-~D~-~~~~-~~~A~~~giP~v~~~~ 127 (449)
.-..+...++.++||++| ++. .+.. ...|++.|||++.+..
T Consensus 83 ------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 223566778888999776 456 5444 4667788999998744
No 186
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.80 E-value=40 Score=31.24 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=31.2
Q ss_pred eEEEeccchhh---hhhcCCCccceeccCCchhHHHHHhhCCcEe
Q 039043 317 GFIHGGWVQQQ---LILKHPSVGCFVTHCGSGSLSEAMVNECQLV 358 (449)
Q Consensus 317 ~~~~~~~~pq~---~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l 358 (449)
.+....++||. .+|-.|++ -+-. |--|+-.|..+|+|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcE
Confidence 56677899985 58888888 4444 6679999999999987
No 187
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.37 E-value=11 Score=29.49 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcH
Q 039043 9 HLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTE 88 (449)
Q Consensus 9 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (449)
+-.-++.+++.|.+.|+++. + ++...+.+++.| +.+..+.. .. ...
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~-a-T~gT~~~l~~~g-----i~~~~v~~-----~~----------------------~~~ 56 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV-A-TEGTAKYLQEAG-----IPVEVVNK-----VS----------------------EGR 56 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE-E-chHHHHHHHHcC-----CeEEEEee-----cC----------------------CCc
Confidence 44567899999999999983 4 444555667677 66655530 00 022
Q ss_pred HHHHHHHhhcCCCEEEEcC-C-------CChHHHHHHhCCceEE
Q 039043 89 PAIESVLRHLKPDFVFFDF-T-------HWLPPLARKFGIKSVL 124 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~-------~~~~~~A~~~giP~v~ 124 (449)
+.+.+++++.+.|+||.-. . +.....|-..|||++.
T Consensus 57 ~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 4677888888999999854 2 3346778899999984
No 188
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=68.97 E-value=9.8 Score=36.26 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh----------HHHHHHhCCceEEEec
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL----------PPLARKFGIKSVLYCI 127 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~----------~~~A~~~giP~v~~~~ 127 (449)
++....+.....+.+.+++.+||++|+.+ +-.+ ..+.++++||.|+..+
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 56666777788899999999999999987 4322 2356689999986533
No 189
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=68.71 E-value=51 Score=29.59 Aligned_cols=151 Identities=11% Similarity=-0.015 Sum_probs=80.5
Q ss_pred cccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhh
Q 039043 249 LLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQL 328 (449)
Q Consensus 249 ~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~ 328 (449)
+++.. +++++.|..|... .+-+..|-+.+.++.++... +.+.+.......++....--.+..
T Consensus 20 ~l~~~-~~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~----------i~~el~~l~~~~~i~~~~r~~~~~ 81 (223)
T PRK05562 20 SLLSN-KIKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKK----------FSKEFLDLKKYGNLKLIKGNYDKE 81 (223)
T ss_pred EEECC-CCEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCC----------CCHHHHHHHhCCCEEEEeCCCChH
Confidence 45543 3568888777665 23334444577777666433 222332222223343322222334
Q ss_pred hhcCCCccceeccCCchhHHHHHhh-----CCcEeccccccchhhH-----HHHHHhhhcceeEeeecCCCCcccHHHHH
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVN-----ECQLVLLPNVGDQIIN-----ARLMGEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~-----GvP~l~~P~~~DQ~~n-----a~~v~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
-|..+.+ +|..-+--.+++.++. |+++.++ |++.. -..+.+- ++-+.+..+..+|.++ ..|+
T Consensus 82 dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~rg-~l~IaIST~G~sP~la-r~lR 153 (223)
T PRK05562 82 FIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRSTK-NFVFALNTKGGSPKTS-VFIG 153 (223)
T ss_pred HhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEecC-CEEEEEECCCcCcHHH-HHHH
Confidence 4566777 8888887777765543 5555433 44332 2233333 3333333322233333 5688
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc
Q 039043 399 KAVKAVIDDDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 399 ~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
+.|++++.++ ..+-+.+.++++.++..
T Consensus 154 ~~ie~~l~~~-----~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 154 EKVKNFLKKY-----DDFIEYVTKIRNKAKKN 180 (223)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Confidence 9999988542 56777777777777754
No 190
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=68.20 E-value=33 Score=34.37 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+++++.+||+||..+ ....+|+++|||++.+
T Consensus 363 ~~l~~~i~~~~~dliig~s--~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNS--HGRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHHhhcCCCEEEECc--chHHHHHHcCCCEEEe
Confidence 3567788888999999886 2367899999999864
No 191
>PRK12342 hypothetical protein; Provisional
Probab=67.47 E-value=11 Score=34.61 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCEEEEcC-------CCChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-------THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-------~~~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+.+++..||+|++.. ..-+..+|+.+|+|++.....
T Consensus 99 ~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 99 KALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 3455666666799999854 233689999999999987654
No 192
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=67.01 E-value=15 Score=33.76 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcccccc
Q 039043 13 FLHIANKLAERGHRISFLLPAKAITKF 39 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~~~ 39 (449)
+.+|+++|++ +|+|+++.+...+.-.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 6788999965 6899999888766544
No 193
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=66.77 E-value=1.3e+02 Score=29.16 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.6
Q ss_pred CCeEEEeccchhh---hhhcCCCccceeccCC----chhHHHHHhhCCcEecc
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTHCG----SGSLSEAMVNECQLVLL 360 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~HgG----~gs~~eal~~GvP~l~~ 360 (449)
...+.+.+-+|+. ++|..-++ |++-.= ..++.||+.+|.|++..
T Consensus 251 ~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 251 QDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred cCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4578888999885 57888888 887643 23667999999999863
No 194
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=66.67 E-value=71 Score=32.51 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=72.8
Q ss_pred eEEEeccchhhh---hhcCCCccceec---cCCchhHH-HHHhhCC----cEeccccccchhhHHHHHHhhhcceeEeee
Q 039043 317 GFIHGGWVQQQL---ILKHPSVGCFVT---HCGSGSLS-EAMVNEC----QLVLLPNVGDQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 317 ~~~~~~~~pq~~---lL~~~~~~~~I~---HgG~gs~~-eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 385 (449)
-+++.+.+|+.+ +++.+++ ++. .-|+|-++ |.++++. |+|.--+.+ ..+++ .-++.+++
T Consensus 363 v~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~~l-~~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAVEL-KGALLTNP 432 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chhhc-CCCEEECC
Confidence 356667888754 6677888 654 35888555 9999987 444333321 12444 66778877
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.+.++++++|.+.|+. . ..+=++|.+++.+.++ ......=++.+++.++.
T Consensus 433 ------~d~~~~A~ai~~AL~m---~-~~Er~~R~~~l~~~v~-~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ------YDPVRMDETIYVALAM---P-KAEQQARMREMFDAVN-YYDVQRWADEFLAAVSP 482 (487)
T ss_pred ------CCHHHHHHHHHHHHcC---C-HHHHHHHHHHHHHHHh-hCCHHHHHHHHHHHhhh
Confidence 5899999999999996 1 1345666667766666 34566667777777654
No 195
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=66.62 E-value=11 Score=34.68 Aligned_cols=40 Identities=8% Similarity=-0.018 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCEEEEcC-------CCChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-------THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-------~~~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+.+++..||+|++.. ..-+..+|+.+|+|++.+...
T Consensus 102 ~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3456666677899999844 234578999999999987664
No 196
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=65.12 E-value=41 Score=34.04 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc
Q 039043 13 FLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
.-.|+++|+++||+|.++++..
T Consensus 23 v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 23 VGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHcCCeEEEEecCC
Confidence 4578999999999999998654
No 197
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=64.93 E-value=8.9 Score=30.20 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcH
Q 039043 9 HLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTE 88 (449)
Q Consensus 9 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (449)
+=.-++.+|+.|.+.|+++ ++ ++.-...+++.| +.+..+. ..+.+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~A-T~gTa~~L~~~G-----i~~~~v~-----~~~~~---------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FA-TGGTSRVLADAG-----IPVRAVS-----KRHED---------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EE-CcHHHHHHHHcC-----CceEEEE-----ecCCC---------------------CC
Confidence 3345789999999999998 34 445556666677 6665553 11110 22
Q ss_pred HHHHHHHhh-cCCCEEEEcC---C--------CChHHHHHHhCCceEE
Q 039043 89 PAIESVLRH-LKPDFVFFDF---T--------HWLPPLARKFGIKSVL 124 (449)
Q Consensus 89 ~~~~~ll~~-~~pD~vI~D~---~--------~~~~~~A~~~giP~v~ 124 (449)
+.+.+++++ .+.|+||.-. . +....+|-..+||++.
T Consensus 57 ~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 57 PTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred cHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 567788888 8999999733 1 1224568888999985
No 198
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=64.33 E-value=33 Score=29.89 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=69.7
Q ss_pred CHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHH
Q 039043 270 NKEQFQE-LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLS 348 (449)
Q Consensus 270 ~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ 348 (449)
+.+.++. +++.++..+..+++..|.- .-+...|..+...+-+=+ ||++ .=.++|..+..
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGyM-------rIL~~~fl~~~~grIlNI-----------HPSL--LP~f~G~h~~~ 122 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGYM-------RILGPEFLSRFEGRILNI-----------HPSL--LPAFPGLHAHE 122 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcchH-------HHcCHHHHHHhhcceEec-----------Cccc--ccCCCCchHHH
Confidence 4444444 8888888888888776542 345566665544332223 8898 89999999999
Q ss_pred HHHhhCCcEecccccc-c-hhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 349 EAMVNECQLVLLPNVG-D-QIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 349 eal~~GvP~l~~P~~~-D-Q~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+|+.+|+..-.+-.+. | ..+-.-.+. +..+.+... -|.+.|.+.|.+.
T Consensus 123 ~A~~aG~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~-----Dt~etl~~RV~~~ 172 (200)
T COG0299 123 QALEAGVKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPG-----DTAETLEARVLEQ 172 (200)
T ss_pred HHHHcCCCccCcEEEEEccCCCCCCeEE---EEeeeecCC-----CCHHHHHHHHHHH
Confidence 9999999987777542 2 222222222 223334444 3889999998774
No 199
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=63.85 E-value=2.8 Score=31.94 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIE 92 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (449)
++.+|+.|.+.|+++ ++++.-...+++.| ++...+- +..... +... ....+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~G-----i~~~~v~----~~~~~~-~~~~----------------g~~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEHG-----IEVTEVV----NKIGEG-ESPD----------------GRVQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHTT-------EEECC----EEHSTG--GGT----------------HCHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHcC-----CCceeee----eecccC-ccCC----------------chhHHH
Confidence 578999999999665 45555567778888 7755543 100000 0000 001688
Q ss_pred HHHhhcCCCEEEEcC-CCC------h---HHHHHHhCCceE
Q 039043 93 SVLRHLKPDFVFFDF-THW------L---PPLARKFGIKSV 123 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~~~------~---~~~A~~~giP~v 123 (449)
+++++.+.|+||... ... + ..+|...+||++
T Consensus 54 ~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 889999999999865 211 1 457778888886
No 200
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=63.36 E-value=10 Score=37.95 Aligned_cols=114 Identities=23% Similarity=0.306 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHh--------CCCE----EEEEc---CC----ccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCC
Q 039043 8 GHLTPFLHIANKLAE--------RGHR----ISFLL---PA----KAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAET 68 (449)
Q Consensus 8 GH~~p~l~la~~L~~--------rGh~----Vt~~~---~~----~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~ 68 (449)
|.+--.+.+|++|.+ .|-+ |..+| ++ .+...+++....++ ...+.+||...+++-..+-.
T Consensus 297 GQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~-a~IlRvPF~~~~gi~~kwis 375 (550)
T PF00862_consen 297 GQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTEN-ARILRVPFGPEKGILRKWIS 375 (550)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESS-EEEEEE-ESESTEEE-S---
T ss_pred CcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCC-cEEEEecCCCCcchhhhccc
Confidence 345556677777753 2543 44444 22 22223333322333 77888886543332111100
Q ss_pred CCCCCCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEEec
Q 039043 69 TNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~~~ 127 (449)
....+.++...++.....+.+.+ ..+||+|+..+ ...|..+++++|+|.+.+..
T Consensus 376 ----rf~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaH 432 (550)
T PF00862_consen 376 ----RFDLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAH 432 (550)
T ss_dssp ----GGG-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-S
T ss_pred ----hhhchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhh
Confidence 12344556555544433333322 24799999887 56778999999999986533
No 201
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=63.21 E-value=55 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
-+.+|+++|++ +|+|+++.+..-+.-+..
T Consensus 15 Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ 43 (253)
T PRK13935 15 GIIILAEYLSE-KHEVFVVAPDKERSATGH 43 (253)
T ss_pred HHHHHHHHHHh-CCcEEEEccCCCCccccc
Confidence 46788899965 689999998876655443
No 202
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=62.55 E-value=8.1 Score=33.26 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCCccceeccCCchhHHHHHhhCCcEecccccc-----------------------chhhHHHHHHhhhcceeEeeecCC
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVG-----------------------DQIINARLMGEELKVGVEVEKGDE 388 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~~G~G~~~~~~~~ 388 (449)
+..++++|++||...+..... ++|+|-+|..+ +.......+.+++|+-+..-.-
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~-- 108 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY-- 108 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE--
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE--
Confidence 334444999999988888877 99999998632 2344577777777777666655
Q ss_pred CCcccHHHHHHHHHHHhcC
Q 039043 389 DGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~~ 407 (449)
-+.+++...|.++..+
T Consensus 109 ---~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 109 ---DSEEEIEAAIKQAKAE 124 (176)
T ss_dssp ---SSHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHc
Confidence 3788899999888765
No 203
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.03 E-value=78 Score=31.73 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
...+.+.+++.+||++|..+ ....+|+++|||++.+
T Consensus 366 ~~e~~~~i~~~~pDliiG~s--~~~~~a~~~gip~v~~ 401 (435)
T cd01974 366 LWHLRSLLFTEPVDLLIGNT--YGKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHHHhhcCCCEEEECc--cHHHHHHHhCCCEEEe
Confidence 34677788888999999986 3578899999999865
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=61.63 E-value=41 Score=31.02 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhC---CCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcH
Q 039043 12 PFLHIANKLAER---GHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTE 88 (449)
Q Consensus 12 p~l~la~~L~~r---Gh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (449)
-+.+|++.|.+. |++|+++.++.-+.-+...-....++++..+. ++ ...... .-.... .
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~----~~----~yav~G-------TPaDCV---~ 76 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG----PR----RFAAEG-------SPADCV---L 76 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC----CC----eEEEcC-------chHHHH---H
Confidence 356677877663 47999999887665544331111114444432 11 000111 111221 1
Q ss_pred HHHHHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~ 127 (449)
-.+..++...+||+||+.. +.+|..-|..+|||.+.++.
T Consensus 77 lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1334445435799999732 22334455678999998865
No 205
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=61.62 E-value=31 Score=31.64 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
-|+.|...-..++|..+++.|++|.++..+...
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 478899999999999999999999999887653
No 206
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=61.08 E-value=32 Score=25.70 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEE-ecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIP-VSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
++.+|+.|.+.|++| |+|.. -...+++.| +++.. ++ .+.. ..+.+
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~G-----i~~~~~~~-----ki~~----------------------~~~~i 47 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREAG-----LPVKTLHP-----KVHG----------------------GILAI 47 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHCC-----CcceeccC-----CCCC----------------------CCHHH
Confidence 468899999999998 45554 346667777 55431 21 0000 00247
Q ss_pred HHHHhhcCCCEEEEcC-C---------CChHHHHHHhCCceE
Q 039043 92 ESVLRHLKPDFVFFDF-T---------HWLPPLARKFGIKSV 123 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~-~---------~~~~~~A~~~giP~v 123 (449)
.+++++.+.|+||... . ..-..+|-..+||++
T Consensus 48 ~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 48 LDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 7788888999999743 1 123466888899886
No 207
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=60.08 E-value=14 Score=32.24 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhcCCC--EEEEcC--CCChHHHHHHhCCceEEEecchHH
Q 039043 87 TEPAIESVLRHLKPD--FVFFDF--THWLPPLARKFGIKSVLYCIISPA 131 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD--~vI~D~--~~~~~~~A~~~giP~v~~~~~~~~ 131 (449)
....+.+++++..++ ++|..+ -+.|..+|+++|+|.|.+.++...
T Consensus 45 a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 45 AIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 345677888887665 666666 677888999999999988776543
No 208
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=59.76 E-value=13 Score=29.47 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcH
Q 039043 9 HLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTE 88 (449)
Q Consensus 9 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (449)
+-.-++.+|+.|.+.|.+|. + ++...+.+.+.| +.+..+. + +.. .... -.
T Consensus 11 dk~~~~~~a~~l~~~G~~i~-a-T~gTa~~L~~~g-----i~~~~v~----~-~~~--~~~~----------------~~ 60 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY-A-TEGTADFLLENG-----IPVTPVA----W-PSE--EPQN----------------DK 60 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE-E-ccHHHHHHHHcC-----CCceEee----e-ccC--CCCC----------------Cc
Confidence 33457889999999999883 4 445555556667 5554442 1 000 0000 01
Q ss_pred HHHHHHHhhcCCCEEEEcC----------CCChHHHHHHhCCceE
Q 039043 89 PAIESVLRHLKPDFVFFDF----------THWLPPLARKFGIKSV 123 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~----------~~~~~~~A~~~giP~v 123 (449)
+.+.+++++.++|+||.-. .+.....|-.+|||++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 5677888888999999843 1345678889999997
No 209
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=59.17 E-value=21 Score=31.96 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh----CCceEEEecchH
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF----GIKSVLYCIISP 130 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~----giP~v~~~~~~~ 130 (449)
+.....+++|+||++|.-+ ...+...||++ |+|+|+++-.+.
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 3456677899999877543 55555666644 999998866554
No 210
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=59.03 E-value=16 Score=33.54 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCCEEEEc-C-CCCh----HHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFD-F-THWL----PPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D-~-~~~~----~~~A~~~giP~v~~ 125 (449)
.=.+++++++.|+||+= + ..++ ..+|+.+|||+|++
T Consensus 188 ~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI 229 (256)
T TIGR00715 188 LEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRI 229 (256)
T ss_pred HHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEE
Confidence 34678999999999994 4 3322 68999999999976
No 211
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=58.56 E-value=19 Score=35.34 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh----------HHHHHHhCCceEEEe
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL----------PPLARKFGIKSVLYC 126 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~----------~~~A~~~giP~v~~~ 126 (449)
++....+.....+.+++++.+||++|+.+ +-.+ ..+.+++|||.+...
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 55566666778899999999999999987 4322 124567999998764
No 212
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=58.52 E-value=19 Score=35.35 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh----------HHHHHHhCCceEEEe
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL----------PPLARKFGIKSVLYC 126 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~----------~~~A~~~giP~v~~~ 126 (449)
++....+.....+.+++++.+||++|+.+ +-.+ ..+.+++|||.+...
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 55566667778899999999999999987 4322 124567999998764
No 213
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.41 E-value=27 Score=35.29 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCc
Q 039043 14 LHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~~ 34 (449)
.+||+++..+|++||+++.+.
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCc
Confidence 679999999999999998765
No 214
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=58.02 E-value=10 Score=30.27 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
-+++|+.+-.+|||+|.+++..+..
T Consensus 19 TT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred hHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 3678999999999999999887654
No 215
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=58.00 E-value=62 Score=32.37 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+++++.+||++|.++. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~~~dliiG~s~--~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY--GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch--hHHHHHHcCCCEEEe
Confidence 57888899999999999872 368899999999865
No 216
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=56.75 E-value=79 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=21.7
Q ss_pred ccceeccCCch------hHHHHHhhCCcEecccc
Q 039043 335 VGCFVTHCGSG------SLSEAMVNECQLVLLPN 362 (449)
Q Consensus 335 ~~~~I~HgG~g------s~~eal~~GvP~l~~P~ 362 (449)
.+++++|+|-| .+.+|...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33388888866 55689999999999964
No 217
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=56.41 E-value=18 Score=36.40 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=44.2
Q ss_pred hHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 346 SLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 346 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
+..||+++|+|+++.=.. .=+..++.. --|...++.+ -....+++++.++.+| ++++.++.+=+
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~~~-~tG~l~dp~~----e~~~~~a~~~~kl~~~------p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVVHG-VTGLLIDPGQ----EAVAELADALLKLRRD------PELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEEcC-CcceeeCCch----HHHHHHHHHHHHHhcC------HHHHHHHHHHH
Confidence 778999999999986433 233344443 4566666643 4455899999999999 78776654433
No 218
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=55.63 E-value=13 Score=33.63 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 100 PDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 100 pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
||+|+ .|. ---|..=|+++|||+|.++-+.+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 99775 677 67788889999999999866554
No 219
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=55.53 E-value=1.4e+02 Score=25.86 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCcEeccccc----cch---hhHHHHHHhhhcceeEeeecC--------CCCcccHHHHHHHHHHHhc
Q 039043 354 ECQLVLLPNV----GDQ---IINARLMGEELKVGVEVEKGD--------EDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 354 GvP~l~~P~~----~DQ---~~na~~v~~~~G~G~~~~~~~--------~~~~~~~~~l~~~i~~ll~ 406 (449)
++|+++.|-. .+. ..|..++.+. |+=+...... ..+..+.++|.+.+.+.++
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED-GVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC-CCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 8999999952 232 4566777776 7665444311 1334677888888877665
No 220
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=55.33 E-value=29 Score=29.97 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
.+.+.++..++|.|++= . ...|..+|+++|+|+|..
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 66677777789999973 3 888999999999999975
No 221
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=55.22 E-value=40 Score=32.35 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=64.3
Q ss_pred CCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
....|++.-+.++-..|+++ +.++++++.+.+.+.++... . ++-+.+- .. ... .
T Consensus 9 ~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p---~-I~~vi~~-------~~--~~~-----~------ 64 (334)
T COG0859 9 LSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP---E-IDKVIII-------DK--KKK-----G------ 64 (334)
T ss_pred ccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh---H-hhhhccc-------cc--ccc-----c------
Confidence 44789999999999999998 49999999999988877542 1 2211110 00 000 0
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEE
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~ 125 (449)
........+...+++.++|+||.=. .+=...++...++|.-..
T Consensus 65 -~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 65 -LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred -cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 0011234566777777999999876 666667777888888643
No 222
>PLN02470 acetolactate synthase
Probab=55.13 E-value=1.1e+02 Score=32.13 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=51.4
Q ss_pred EeCCcccCCHH--HHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccc-----hh-hhhhc-
Q 039043 262 AFGSECVLNKE--QFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWV-----QQ-QLILK- 331 (449)
Q Consensus 262 s~GS~~~~~~~--~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~-----pq-~~lL~- 331 (449)
+|||....+.. -.+.++..|+..|.+.+|-+..... ..+.... ..+++.+..-- -+ .+-++
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~---------~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar 72 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS---------MEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAK 72 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc---------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHH
Confidence 46666653332 2566888888899998888766532 1111111 11123221111 01 11111
Q ss_pred -CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 -HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 -~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.-.++++++|.|-| .+++|...++|||++.
T Consensus 73 ~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 73 ASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 12344499999976 6679999999999985
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.93 E-value=1.2e+02 Score=25.70 Aligned_cols=91 Identities=18% Similarity=0.133 Sum_probs=52.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEE---cCCc-c--ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFL---LPAK-A--ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPF 74 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~---~~~~-~--~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~ 74 (449)
+++-++.|-..-.+.+|-..+.+|++|.|+ -... . ...+++. ++ +++.... .+.. +. ..+
T Consensus 7 vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~-v~~~~~g----~~~~--~~-~~~--- 72 (159)
T cd00561 7 VYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL---PN-IEIHRMG----RGFF--WT-TEN--- 72 (159)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC---CC-cEEEECC----CCCc--cC-CCC---
Confidence 356778898888899998888999999983 3321 1 1112222 22 6666654 2111 00 011
Q ss_pred CcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 75 PLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
................+.++.-++|+||-|-
T Consensus 73 --~~~~~~~a~~~~~~a~~~~~~~~~dLlVLDE 103 (159)
T cd00561 73 --DEEDIAAAAEGWAFAKEAIASGEYDLVILDE 103 (159)
T ss_pred --hHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 1111222233445566677777899999997
No 224
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=54.70 E-value=1.5e+02 Score=26.12 Aligned_cols=148 Identities=11% Similarity=0.149 Sum_probs=76.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
++++.|..|... ..-+..|-..|.++.++-... .+.+.......++....--.+...+..+++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~----------~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL----------ESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC----------CHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 568888777665 344455556787766553221 122222222234543222223445677777
Q ss_pred cceeccCCchhHH-----HHHhhCCcEecc--ccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCC
Q 039043 336 GCFVTHCGSGSLS-----EAMVNECQLVLL--PNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDD 408 (449)
Q Consensus 336 ~~~I~HgG~gs~~-----eal~~GvP~l~~--P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~ 408 (449)
+|..-|...++ +|-..|+|+-++ |-..| +..-..+.+- ++-+.+..+..+|.+ ...|++.|++++..
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT~G~sP~l-a~~lr~~ie~~l~~- 146 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISSGGAAPVL-ARLLRERIETLLPP- 146 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEECCCCCcHH-HHHHHHHHHHhcch-
Confidence 88888876444 444568888333 22222 2222233332 333333332212333 35688888888863
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 039043 409 HSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 409 ~~~~~~~~~~~a~~l~~~~~~ 429 (449)
....+-+.+.++++.++.
T Consensus 147 ---~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 147 ---SLGDLATLAATWRDAVKK 164 (205)
T ss_pred ---hHHHHHHHHHHHHHHHHh
Confidence 114566666667776664
No 225
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=54.56 E-value=34 Score=29.11 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh---------------HHHHHHhCCceEEEec
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF-THWL---------------PPLARKFGIKSVLYCI 127 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~---------------~~~A~~~giP~v~~~~ 127 (449)
..+..+++.+.+++++.+||.++.+. ++.. ..++...|+|+.-+.+
T Consensus 44 ~Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P 105 (164)
T PRK00039 44 ERLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTP 105 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 44556778999999999999999887 4431 3466778888886644
No 226
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=54.56 E-value=44 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
++-|...-+.+|+..|+++|++|.++-.+-.
T Consensus 12 GGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 12 GGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred CCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 5678888899999999999999999876643
No 227
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=54.02 E-value=1.2e+02 Score=25.65 Aligned_cols=98 Identities=15% Similarity=0.022 Sum_probs=51.2
Q ss_pred hcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEecc
Q 039043 244 ERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGW 323 (449)
Q Consensus 244 ~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 323 (449)
.++-++|.... ...|+.|... .+....++....+-+++=+++... . .+.. .....+..++
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~G-----lM~a~a~ga~~~gg~viGVlp~~l-----~--~~~~-----~~~~~i~~~~ 80 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRTG-----VMEAVSKGAREAGGLVVGILPDED-----F--AGNP-----YLTIKVKTGM 80 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCchh-----HHHHHHHHHHHCCCeEEEECChhh-----c--cCCC-----CceEEEECCC
Confidence 34555665543 4455533332 344555554455666665554321 0 0000 0012233343
Q ss_pred -chhhhhhc-CCCccceeccCCchhHH---HHHhhCCcEecccc
Q 039043 324 -VQQQLILK-HPSVGCFVTHCGSGSLS---EAMVNECQLVLLPN 362 (449)
Q Consensus 324 -~pq~~lL~-~~~~~~~I~HgG~gs~~---eal~~GvP~l~~P~ 362 (449)
.+...++. .++ ..++--||.||+. |++.+++|+++++.
T Consensus 81 ~~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 81 NFARNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred cchHHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34444444 444 3466678889876 56889999999885
No 228
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=53.66 E-value=70 Score=32.93 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEe
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~ 126 (449)
..+.+.+++.+||+||.++ ....+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~--~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ--MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc--hHHHHHHHcCCCEEEec
Confidence 4778888999999999876 34568899999998664
No 229
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=53.50 E-value=1.3e+02 Score=24.88 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEecccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLPN 362 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P~ 362 (449)
+.+ +++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 445 89997765 56689999999999864
No 230
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=53.42 E-value=1.2e+02 Score=29.77 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=36.9
Q ss_pred eeccCCchhHHHHHhhCCcEec--cccccch------hhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 338 FVTHCGSGSLSEAMVNECQLVL--LPNVGDQ------IINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 338 ~I~HgG~gs~~eal~~GvP~l~--~P~~~DQ------~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+-|+ |..+++.|+.+|.|+-. ++...|- -.|+.++.+- .++.. ..++.+++..+|.+++.+
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~-----~~d~v---vvV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK-----LVDRV---VVVEDDEIAAAILRLFED 316 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh-----cCceE---EEeccHHHHHHHHHHHHh
Confidence 5555 67889999999998732 1122232 2233333332 12222 136788999999999998
No 231
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=53.14 E-value=23 Score=30.94 Aligned_cols=40 Identities=8% Similarity=-0.112 Sum_probs=31.3
Q ss_pred hcHHHHHHHHhhcCCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 86 LTEPAIESVLRHLKPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 86 ~~~~~~~~ll~~~~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
.....+.+.+++.++|+|++- . .+.|..+|..+|+|++..
T Consensus 37 ~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 37 EIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 344566666677789999963 4 778889999999999876
No 232
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.51 E-value=47 Score=31.70 Aligned_cols=37 Identities=11% Similarity=-0.106 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEec
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
..++..+++. .|++|+.- .+.+.+|..+|+|+|.++.
T Consensus 242 L~el~ali~~--a~l~I~~D-SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 242 LDEAVDLIAL--AKAVVTND-SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred HHHHHHHHHh--CCEEEeeC-CHHHHHHHHcCCCEEEEEC
Confidence 3566777774 49999763 3567888899999998755
No 233
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=51.79 E-value=1.6e+02 Score=27.78 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=60.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccC-----------CCCCCCCCEEEEEecCCCCCCCCCCCCCCCC
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFE-----------PSNLHRNLITFIPVSVPRVDGLPPGAETTND 71 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~-----------~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~ 71 (449)
-.|+.|--.-.=.|.++|.++||+|-++.-++...+.- ++..+|+ +=+.+.|.
T Consensus 58 G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~-vFiRs~~s--------------- 121 (323)
T COG1703 58 GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPG-VFIRSSPS--------------- 121 (323)
T ss_pred CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCC-eEEeecCC---------------
Confidence 35778888888899999999999999988766544321 1111222 22333320
Q ss_pred CCCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh--HHHHHHhCCceEEE
Q 039043 72 VPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL--PPLARKFGIKSVLY 125 (449)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~--~~~A~~~giP~v~~ 125 (449)
.... ............+|+...+|+||.+. -.+- ..+++...+=.++.
T Consensus 122 --rG~l----GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 122 --RGTL----GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred --Cccc----hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 0000 11122335667788889999999998 3322 45566655555443
No 234
>PRK11914 diacylglycerol kinase; Reviewed
Probab=51.75 E-value=32 Score=32.54 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=47.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.+.++--|......+.+..+...|+..+..+.+...... .+.. ..+ ........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~----------~~~~-----------~~a-~~~~~~~~d~-- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA----------HDAR-----------HLV-AAALAKGTDA-- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH----------HHHH-----------HHH-HHHHhcCCCE--
Confidence 444554444334456677788888888877654433221 1000 000 0112233456
Q ss_pred eeccCCchhHHHHH----hhCCcEecccc
Q 039043 338 FVTHCGSGSLSEAM----VNECQLVLLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal----~~GvP~l~~P~ 362 (449)
+|.-||=||++|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999987 34799999995
No 235
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=51.52 E-value=27 Score=33.39 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=30.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
++.||.|-.=-.+.|++.|.++|+++.+++...-.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 36789999999999999999999999999876543
No 236
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=50.95 E-value=18 Score=28.61 Aligned_cols=34 Identities=18% Similarity=-0.035 Sum_probs=29.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.+.|+-.|.....-++..|++.|++|++.....-
T Consensus 5 ~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~ 38 (119)
T cd02067 5 ATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVP 38 (119)
T ss_pred EeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 4678899999999999999999999999875543
No 237
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=50.58 E-value=1.1e+02 Score=29.87 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAIT 37 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 37 (449)
-|+.|-..=++.+|..+++.|.+|.|++.+...+
T Consensus 90 ~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~ 123 (372)
T cd01121 90 DPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPE 123 (372)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHH
Confidence 4777888888999999999999999988775443
No 238
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=50.40 E-value=17 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
++-|...=...||-.|++-+|.|.+++++..+..
T Consensus 28 GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 28 GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred CCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 4667778889999999999999999999887644
No 239
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=50.36 E-value=26 Score=32.03 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCEEEEcC--CCCh---HHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDF--THWL---PPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~--~~~~---~~~A~~~giP~v~~ 125 (449)
.=.+++++++.|+||+=. ..+. ..+|+.+|||+|++
T Consensus 181 ~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 221 (248)
T PRK08057 181 LERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMI 221 (248)
T ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 346788999999999944 3212 68999999999986
No 240
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=50.32 E-value=31 Score=33.78 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=48.6
Q ss_pred ccceeccCCchhHHHHHhh-----------------CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVN-----------------ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGV 397 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~-----------------GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l 397 (449)
..+++|.||..+...|+.+ +.|++.++-.. +.-+.+.+.-+ |+|++.-+-+++..++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~l-Glg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARIL-GLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHT-TSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhccee-eeEEEEecCCcchhhhHHHh
Confidence 4569999998888776533 24566665544 46666666655 99987776665677899999
Q ss_pred HHHHHHHhcC
Q 039043 398 CKAVKAVIDD 407 (449)
Q Consensus 398 ~~~i~~ll~~ 407 (449)
.++|++..++
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887654
No 241
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=49.01 E-value=1.6e+02 Score=26.89 Aligned_cols=78 Identities=18% Similarity=0.093 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIE 92 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (449)
...||+.|.++|+.|++.+...+.. ....+ +....= .+ . -.+.+.
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~-~~~~~-----~~v~~G------~l----------~-------------~~~~l~ 58 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGG-PADLP-----GPVRVG------GF----------G-------------GAEGLA 58 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCC-cccCC-----ceEEEC------CC----------C-------------CHHHHH
Confidence 3578899999999888776655444 22111 111100 00 0 235788
Q ss_pred HHHhhcCCCEEEEcC-------CCChHHHHHHhCCceEEE
Q 039043 93 SVLRHLKPDFVFFDF-------THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-------~~~~~~~A~~~giP~v~~ 125 (449)
+++++.+.++||=-. +--+..+|+++|||++.+
T Consensus 59 ~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 59 AYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 888999999988322 223467899999999987
No 242
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=49.00 E-value=18 Score=31.07 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC
Q 039043 2 YPWFAMGHLTPFLHIANKLAER 23 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r 23 (449)
+-.|+=||..=|++|.+.|.++
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 43 VVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEcCCCcHHHHHHHHHHHHhh
Confidence 4467889999999999999766
No 243
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=47.98 E-value=48 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=19.2
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
.....+.+.+.+++++.+||+|++-.
T Consensus 83 ~~~~~~~~~l~~~i~~~~p~~V~t~~ 108 (128)
T PF02585_consen 83 WSWEELVRDLEDLIREFRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHH-ESEEEEE-
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEECC
Confidence 34445777899999999999999865
No 244
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=47.27 E-value=2.8e+02 Score=27.07 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=58.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCC-----hhHHHhcCCCeEEEeccchhh---hhhcCCCccce
Q 039043 267 CVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALP-----EGFEERVKGRGFIHGGWVQQQ---LILKHPSVGCF 338 (449)
Q Consensus 267 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp-----~~~~~~~~~~~~~~~~~~pq~---~lL~~~~~~~~ 338 (449)
+......+..++.+++..+.++.+.+..+.........++ .|-......-.+.+.+++||. .+|-.||+ -
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--N 267 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--N 267 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--c
Confidence 4567777888888888888887777665532110100111 110111112255677899985 59999998 4
Q ss_pred eccCCchhHHHHHhhCCcEecccc
Q 039043 339 VTHCGSGSLSEAMVNECQLVLLPN 362 (449)
Q Consensus 339 I~HgG~gs~~eal~~GvP~l~~P~ 362 (449)
+=. |==|+.-|..+|+|.|=-.+
T Consensus 268 fVR-GEDSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 268 FVR-GEDSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred eEe-cchHHHHHHHhCCCceEecC
Confidence 444 56699999999999984333
No 245
>PRK04940 hypothetical protein; Provisional
Probab=46.52 E-value=37 Score=29.28 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCCEEEEcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVFFDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
+++++|..+ -++|..+|+++|+|.|.+.++..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 567888877 78999999999999999877554
No 246
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=46.43 E-value=73 Score=22.41 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhccC
Q 039043 397 VCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLLN 449 (449)
Q Consensus 397 l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (449)
+.-.|.+|++| +++.+.|.+ +..+..|-...-+++|.+.|+.|-|
T Consensus 36 FQlLitRLmnn------eeIsEeaQ~--EMA~eAgi~~~rID~IA~fLNqWGN 80 (81)
T PF10820_consen 36 FQLLITRLMNN------EEISEEAQQ--EMASEAGIDEQRIDDIANFLNQWGN 80 (81)
T ss_pred HHHHHHHHhcc------HhhhHHHHH--HHHHHcCCcHHHHHHHHHHHHHhcc
Confidence 44567788899 777776543 3334456666689999999988754
No 247
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=45.75 E-value=22 Score=33.85 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
++.||.|-.--.+.||++|.+||..+-+++...-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 46788999999999999999999999999876644
No 248
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.52 E-value=1e+02 Score=34.18 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=65.3
Q ss_pred Eeccchhh---hhhcCCCccceecc---CCchh-HHHHHhhCC---cEeccccccchhhHHHHHHhhhc-ceeEeeecCC
Q 039043 320 HGGWVQQQ---LILKHPSVGCFVTH---CGSGS-LSEAMVNEC---QLVLLPNVGDQIINARLMGEELK-VGVEVEKGDE 388 (449)
Q Consensus 320 ~~~~~pq~---~lL~~~~~~~~I~H---gG~gs-~~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~ 388 (449)
+...+|+. +++..+++ ++-- -|+|. ..|+++++. -+++++-+ +...+.+ | -|+.+++
T Consensus 444 ~~~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa~~L-~~~AllVNP--- 511 (934)
T PLN03064 444 LDRSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAAQSL-GAGAILVNP--- 511 (934)
T ss_pred eccCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchHHHh-CCceEEECC---
Confidence 33446654 56777888 6654 48875 459999954 22222321 2222233 4 4666776
Q ss_pred CCcccHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 389 DGLFTRDGVCKAVKAVID-DDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
.+.++++++|.+.|+ +. .+-+++.+++.+.+. ......-++.|++.+++.
T Consensus 512 ---~D~~~vA~AI~~AL~M~~-----~Er~~r~~~~~~~V~-~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 512 ---WNITEVAASIAQALNMPE-----EEREKRHRHNFMHVT-THTAQEWAETFVSELNDT 562 (934)
T ss_pred ---CCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHHHH
Confidence 589999999999998 41 445555556666655 345666677777666643
No 249
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.21 E-value=39 Score=29.74 Aligned_cols=34 Identities=15% Similarity=-0.156 Sum_probs=27.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.+.++-.|-....-++..|++.|++|++++...-
T Consensus 88 ~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 88 GTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred EecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 4567788998888889999999999998876543
No 250
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=43.99 E-value=1.4e+02 Score=27.90 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred cCCchhH-HHHHhhCCc--EeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 341 HCGSGSL-SEAMVNECQ--LVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 341 HgG~gs~-~eal~~GvP--~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
+||.||. +|.+.-.-| |..+... |++..+.+..++ ++.-. ++++.|.+++.+++
T Consensus 256 ~GGlGsaVAEvlse~~p~~~~riGvp-~~fg~sg~~~~L------l~~yg----l~~~~I~~~v~~~~ 312 (312)
T COG3958 256 IGGLGSAVAEVLSENGPTPMRRIGVP-DTFGRSGKADEL------LDYYG----LDPESIAARVLELL 312 (312)
T ss_pred ecchhHHHHHHHHhcCCcceEEecCC-chhccccchHHH------HHHhC----CCHHHHHHHHHhhC
Confidence 6999864 566655444 4333333 777777766665 55444 89999988887764
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=43.83 E-value=53 Score=33.48 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=62.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccccc----CCCCCCC------CCEEEEEecCCCCCCCCCCCCCCCCC
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKF----EPSNLHR------NLITFIPVSVPRVDGLPPGAETTNDV 72 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~----~~~g~~~------~~i~~~~~p~~~~~~l~~~~~~~~~~ 72 (449)
--|+.|-..=.+.++.+.+++|.++.|++.+...+.+ +..|..- +.+.+..++ |. .
T Consensus 270 G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-------p~------~- 335 (484)
T TIGR02655 270 GATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-------PE------S- 335 (484)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc-------cc------c-
Confidence 3578888888899999999999999999988665443 3334210 012222221 00 0
Q ss_pred CCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCC---------------hHHHHHHhCCceEEEec
Q 039043 73 PFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THW---------------LPPLARKFGIKSVLYCI 127 (449)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~---------------~~~~A~~~giP~v~~~~ 127 (449)
...+.....+.+.+++.+||+||.|+ +.. ....++..|+..+....
T Consensus 336 ---------~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 336 ---------AGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred ---------CChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 01123455677778888999999998 422 12244566777766533
No 252
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=43.82 E-value=75 Score=29.71 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=43.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.++++.-|......+.+..+...++..+..+.+....... .. ..+ +. ...-..+++
T Consensus 5 ~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~------~~-~~~--------------~~-~~~~~~~d~-- 60 (293)
T TIGR00147 5 PAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKG------DA-ARY--------------VE-EARKFGVDT-- 60 (293)
T ss_pred EEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcc------cH-HHH--------------HH-HHHhcCCCE--
Confidence 4455552322234455666777788888776554332210 00 000 00 111123456
Q ss_pred eeccCCchhHHHHHhh-----CCcEe-cccc
Q 039043 338 FVTHCGSGSLSEAMVN-----ECQLV-LLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal~~-----GvP~l-~~P~ 362 (449)
+|.-||=||++|++.. ..|.+ ++|.
T Consensus 61 ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 61 VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 9999999999996643 34444 5895
No 253
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=43.59 E-value=37 Score=29.16 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=23.1
Q ss_pred HHHhhcCCCEEEEcC-CCC--hHHHHHHhCCceEEEe
Q 039043 93 SVLRHLKPDFVFFDF-THW--LPPLARKFGIKSVLYC 126 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~~~--~~~~A~~~giP~v~~~ 126 (449)
+.+...+||+||+.. ... ....-++.|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 344457999999865 332 3344578999998764
No 254
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.56 E-value=77 Score=25.23 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=30.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
.+.++-.|-....-++.-|+..|++|++.+...-.
T Consensus 5 ~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~ 39 (122)
T cd02071 5 AKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTP 39 (122)
T ss_pred EecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 46788899999999999999999999999976443
No 255
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.32 E-value=60 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCEEEEcC-CC----------ChHHHHHHhCCceEEEecc
Q 039043 99 KPDFVFFDF-TH----------WLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 99 ~pD~vI~D~-~~----------~~~~~A~~~giP~v~~~~~ 128 (449)
+||+|+|.. +- -+..+|+++|+|++-.+.+
T Consensus 124 ~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 899999865 32 3567899999999865443
No 256
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=43.26 E-value=91 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCccccc
Q 039043 14 LHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
.++|..|+++|++|.++..+.....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l 27 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSL 27 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCH
Confidence 5788999999999999998876544
No 257
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.94 E-value=60 Score=31.27 Aligned_cols=37 Identities=8% Similarity=-0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEec
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
..++.++++. .|++|+. ..+.+.+|..+|+|+|.++.
T Consensus 252 L~el~ali~~--a~l~I~n-DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 252 LEQAVILIAA--CKAIVTN-DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHHHHh--CCEEEec-CChHHHHHHHhCCCEEEEEC
Confidence 3566677774 4999976 34578899999999998855
No 258
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=42.76 E-value=2.9e+02 Score=25.93 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCc
Q 039043 277 LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQ 356 (449)
Q Consensus 277 ~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP 356 (449)
+++.++..+..+++..+.. .-+|..+....+.+-+=+ ||++ .=.+.|.+.+..|+..|+.
T Consensus 157 ~~~~l~~~~~Dlivlagy~-------~il~~~~l~~~~~~iiNi-----------HpSL--LP~~rG~~~~~~ai~~G~~ 216 (286)
T PRK13011 157 VLDVVEESGAELVVLARYM-------QVLSPELCRKLAGRAINI-----------HHSF--LPGFKGAKPYHQAYERGVK 216 (286)
T ss_pred HHHHHHHhCcCEEEEeChh-------hhCCHHHHhhccCCeEEe-----------cccc--CCCCCCCcHHHHHHHCCCC
Confidence 5666766777777777643 346666665433322222 5666 6666799999999999999
Q ss_pred Eecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 039043 357 LVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE 425 (449)
Q Consensus 357 ~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~ 425 (449)
...+-.+. +..+-..-+. .--+.+... -|.++|.+++.++ +- .-|-+.++.+.+
T Consensus 217 ~tG~TvH~v~~~~D~G~Ii~---Q~~v~I~~~-----dt~~~L~~r~~~~-E~------~~~~~ai~~~~~ 272 (286)
T PRK13011 217 LIGATAHYVTDDLDEGPIIE---QDVERVDHA-----YSPEDLVAKGRDV-EC------LTLARAVKAHIE 272 (286)
T ss_pred eEEEEEEEEcCCCcCCCcEE---EEEEEcCCC-----CCHHHHHHHHHHH-HH------HHHHHHHHHHHh
Confidence 98888642 3333333333 334456665 4999999999885 33 456655555543
No 259
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.75 E-value=41 Score=34.52 Aligned_cols=36 Identities=8% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEe
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~ 126 (449)
..+.+++++.+||+||.++ ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~--~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ--MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc--hhhHHHHHhCCCEEEee
Confidence 4667888888999999986 34446899999998654
No 260
>PRK13337 putative lipid kinase; Reviewed
Probab=42.67 E-value=79 Score=29.84 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCccceeccCCchhHHHHHhh------CCcEecccc
Q 039043 333 PSVGCFVTHCGSGSLSEAMVN------ECQLVLLPN 362 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~eal~~------GvP~l~~P~ 362 (449)
.++ +|.-||=||++|++.. ..|+-++|.
T Consensus 58 ~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 355 9999999999998862 357889995
No 261
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.60 E-value=1.2e+02 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.705 Sum_probs=22.7
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 99999977 4679999999999984
No 262
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.32 E-value=1.3e+02 Score=30.47 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.+++.++ +||++|.++ ....+|+++|+|++.+
T Consensus 364 ~le~~~~--~~dliig~s--~~~~~a~~~gip~~~~ 395 (455)
T PRK14476 364 DLEELAE--GADLLITNS--HGRQAAERLGIPLLRV 395 (455)
T ss_pred HHHHhcc--CCCEEEECc--hhHHHHHHcCCCEEEe
Confidence 4455555 899999986 2366889999999854
No 263
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=42.29 E-value=68 Score=27.00 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=36.5
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCC---------------hHHHHHHhCCceEEEec
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFFDF-THW---------------LPPLARKFGIKSVLYCI 127 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~---------------~~~~A~~~giP~v~~~~ 127 (449)
+...+..+++.+.+++++.+||.+..+. ++. ...++.+.|+|++-+.+
T Consensus 38 ~~~RL~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P 101 (156)
T TIGR00228 38 LPSRLKLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 101 (156)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 4455667889999999999999998876 431 35677788888886644
No 264
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.88 E-value=20 Score=31.35 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=26.3
Q ss_pred cCCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 98 LKPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 98 ~~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
..||+|| .|. ..-|..=|.++|||+|.++.+..
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 3699775 576 77888899999999999876554
No 265
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=41.72 E-value=55 Score=30.13 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=27.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
-.|+.|-..=.+.+|.+.+++|..|.|++.+.
T Consensus 43 G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 43 GVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 35788888888999888888899999999875
No 266
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.67 E-value=35 Score=33.99 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEe
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~ 126 (449)
...+.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~~~pDliig~~~--~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRLKPDLIGSGIK--EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHhCCCEEEecCc--chhhhhhcCCCeEeCC
Confidence 457788899999999999863 4567899999997653
No 267
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=41.61 E-value=15 Score=32.67 Aligned_cols=108 Identities=21% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcCCcc-ccccCCCCCCCCCEEEEEecCCCC-CCCCCCCCCCCCCCCCcHHHHHHHHh
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLPAKA-ITKFEPSNLHRNLITFIPVSVPRV-DGLPPGAETTNDVPFPLHPLLMTAMD 85 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~~~~-~~~~~~~g~~~~~i~~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (449)
.|+...+.++..++.||-.+.|+++... .+.++++... +.-..+. ..| .++-... .. .......
T Consensus 92 ~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r---~~gy~~~-~~w~~G~lTN~---~~-------l~g~~~~ 157 (251)
T KOG0832|consen 92 SYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARR---AGGYSHN-RKWLGGLLTNA---RE-------LFGALVR 157 (251)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHH---hcCceee-eeeccceeecc---hh-------hcccccc
Confidence 3567778888899999999999987754 3344443100 0011111 000 1221110 00 0000000
Q ss_pred --hcHHHHHHHHhhcCCCEEEE-cC--CCChHHHHHHhCCceEEEecch
Q 039043 86 --LTEPAIESVLRHLKPDFVFF-DF--THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 86 --~~~~~~~~ll~~~~pD~vI~-D~--~~~~~~~A~~~giP~v~~~~~~ 129 (449)
...+...-++....+|+||+ |. ...|..=|.+++||+|.+.-..
T Consensus 158 ~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 158 KFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred cccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 01223333445557798765 65 7888889999999999875443
No 268
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=41.58 E-value=20 Score=31.67 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=26.1
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...|..=|.++|||+|.++.+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 899776 576 67788889999999999976554
No 269
>PRK10867 signal recognition particle protein; Provisional
Probab=41.37 E-value=54 Score=32.80 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=32.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC-CCEEEEEcCCccccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAER-GHRISFLLPAKAITK 38 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~ 38 (449)
+-.+|.|-..-...||..|+++ |++|.+++.+.++..
T Consensus 106 vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 106 VGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 4567889999999999999999 999999999987764
No 270
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.42 E-value=2e+02 Score=27.07 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=57.0
Q ss_pred eEEeCccCCCCCCcc-chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCC
Q 039043 227 VILSGPALPESPRFA-LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESAL 305 (449)
Q Consensus 227 ~~~vGp~~~~~~~~~-~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l 305 (449)
-+|+|....++.+.+ .-.++........-+.+-.-........+...+..+.++++.+|.++.+-+|..... ..+
T Consensus 98 drf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~----~~~ 173 (293)
T COG2159 98 DRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG----AGL 173 (293)
T ss_pred cceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC----ccc
Confidence 456665544432211 223444444433323333333333333555668889999999999999966554211 011
Q ss_pred ChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCC--chhHHHH
Q 039043 306 PEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCG--SGSLSEA 350 (449)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG--~gs~~ea 350 (449)
.. .....+.=..-.-+.|+++.++.|+| ..=..|+
T Consensus 174 ~~----------~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 174 EK----------GHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred cc----------CCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 10 00001111123445789999999999 5444444
No 271
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=40.17 E-value=37 Score=26.84 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCCCC
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEPSN 43 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g 43 (449)
+.|++.+.-.+.-|||++|++.+..+.+.+...|
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~~~ 42 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDDGG 42 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccccc
Confidence 4677888888889999999999999988776544
No 272
>PLN02293 adenine phosphoribosyltransferase
Probab=40.01 E-value=57 Score=28.38 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=31.3
Q ss_pred HhhcHHHHHHHHhhcCCCEEEE-cC--CCChHHHHHHhCCceEEE
Q 039043 84 MDLTEPAIESVLRHLKPDFVFF-DF--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 84 ~~~~~~~~~~ll~~~~pD~vI~-D~--~~~~~~~A~~~giP~v~~ 125 (449)
+..+.+.+.+.+++.++|+|++ +. ...|..+|+.+|+|++..
T Consensus 47 ~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 47 FKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3345566666777778999986 44 667889999999998754
No 273
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=39.98 E-value=27 Score=34.43 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEE
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISF 29 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~ 29 (449)
.-+.|-..-++.|.++|++||++|.=
T Consensus 9 ~SG~GKTTvT~glm~aL~~rg~~Vqp 34 (451)
T COG1797 9 SSGSGKTTVTLGLMRALRRRGLKVQP 34 (451)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCcccc
Confidence 45678899999999999999999853
No 274
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=39.66 E-value=1.1e+02 Score=28.29 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHH
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPA 90 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (449)
.-+..|++.|.++|.+|++++.+.-.+..++.. +. ++ ..... .... ..-..+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~------~~--~~--~~~~~-----~~~~-------------~~~l~e 191 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIA------AA--LG--GPRVV-----NLAG-------------KTSLRE 191 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHH------Hh--cC--CCccc-----cCcC-------------CCCHHH
Confidence 467889999998899999988776544443321 00 00 00000 0000 001235
Q ss_pred HHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecc
Q 039043 91 IESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~ 128 (449)
+..+++. .|++|+--+ +...+|..+|+|++.+...
T Consensus 192 ~~~li~~--~~l~I~~Ds-g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 192 LAALLAR--ADLVVTNDS-GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHh--CCEEEeeCC-HHHHHHHHcCCCEEEEECC
Confidence 6666774 499997533 5677788999999988653
No 275
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=39.54 E-value=1.9e+02 Score=28.28 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
...+.+.+++.+||++|.+. .....|+++|+|++.+
T Consensus 337 ~~~~~~~~~~~~pdl~ig~~--~~~~~~~~~~ip~~~~ 372 (399)
T cd00316 337 LEELEELIRELKPDLIIGGS--KGRYIAKKLGIPLVRI 372 (399)
T ss_pred HHHHHHHHhhcCCCEEEECC--cHHHHHHHhCCCEEEc
Confidence 45677788888999999986 2456778899999854
No 276
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=39.50 E-value=1.8e+02 Score=28.04 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred eEEEeccchhhh-hhcCCCccceeccC---Cch-hHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCc
Q 039043 317 GFIHGGWVQQQL-ILKHPSVGCFVTHC---GSG-SLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGL 391 (449)
Q Consensus 317 ~~~~~~~~pq~~-lL~~~~~~~~I~Hg---G~g-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 391 (449)
...+.+-.+-.. +-.|+|+ +|+|= |.| ...|+|+-|-|.| .|+..+.+ +|-..+.
T Consensus 254 kasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d---~GYYY~~------ 313 (364)
T PF10933_consen 254 KASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD---VGYYYPD------ 313 (364)
T ss_pred eeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc---cCcCCCC------
Confidence 334444444444 3347888 99994 333 4569999999998 47777774 5544443
Q ss_pred ccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 392 FTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 392 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
++..+=++++.+.+.+ ||....+|+++++++=..+.
T Consensus 314 fD~~~G~r~L~~A~~~-HD~~~~~Y~~ra~~~l~~~~ 349 (364)
T PF10933_consen 314 FDAFEGARQLLRAIRE-HDADLDAYRARARRLLDRLS 349 (364)
T ss_pred ccHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhhC
Confidence 6777777777777776 78889999999999877765
No 277
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=39.19 E-value=52 Score=28.77 Aligned_cols=40 Identities=8% Similarity=-0.099 Sum_probs=30.3
Q ss_pred hcHHHHHHHHhhcCCCEEEE-cC--CCChHHHHHHhCCceEEE
Q 039043 86 LTEPAIESVLRHLKPDFVFF-DF--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 86 ~~~~~~~~ll~~~~pD~vI~-D~--~~~~~~~A~~~giP~v~~ 125 (449)
.....+.+.+++.++|+|++ +. .+.|..+|..+|+|++..
T Consensus 37 ~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 37 EVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 34455566666778999986 34 677888999999999975
No 278
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.14 E-value=4e+02 Score=27.08 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCC-ChhHHHhcCCCeEEEecc-------chh
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESAL-PEGFEERVKGRGFIHGGW-------VQQ 326 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~~~~~-------~pq 326 (449)
.|.+++.-.||.... ....++..|.+.|..+.+++...- ..-+ |..+. ......++..-| +.|
T Consensus 70 ~k~IllgVtGsIAay---ka~~lvr~L~k~G~~V~VvmT~sA-----~~fv~p~~~~-~ls~~~V~~d~~~~~~~~~~~H 140 (475)
T PRK13982 70 SKRVTLIIGGGIAAY---KALDLIRRLKERGAHVRCVLTKAA-----QQFVTPLTAS-ALSGQRVYTDLFDPESEFDAGH 140 (475)
T ss_pred CCEEEEEEccHHHHH---HHHHHHHHHHhCcCEEEEEECcCH-----HHHhhHHHHH-HhcCCceEecCCCcccccCccc
Confidence 355777666777643 344466666777888777765531 0101 11111 111222332222 234
Q ss_pred hhhhcCCCccceeccCCchhHH-------------HHHhhCCcEecccccc----chh---hHHHHHHhhhcceeEeeec
Q 039043 327 QLILKHPSVGCFVTHCGSGSLS-------------EAMVNECQLVLLPNVG----DQI---INARLMGEELKVGVEVEKG 386 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~gs~~-------------eal~~GvP~l~~P~~~----DQ~---~na~~v~~~~G~G~~~~~~ 386 (449)
.++...+++ .+|.-+=+||+. -++..++|++++|-+. +.+ .|..++.+. |+-+.-...
T Consensus 141 i~la~~aD~-~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~-G~~vi~P~~ 218 (475)
T PRK13982 141 IRLARDCDL-IVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRD-GVHMIGPNA 218 (475)
T ss_pred hhhhhhcCE-EEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHC-CCEEECCCC
Confidence 555555664 345555555443 3477899999999643 333 677778877 876543321
Q ss_pred ---------CCCCcccHHHHHHHHHHHhc
Q 039043 387 ---------DEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 387 ---------~~~~~~~~~~l~~~i~~ll~ 406 (449)
...+..++++|...+.+++.
T Consensus 219 g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 219 GEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 01456678889888888775
No 279
>PRK11823 DNA repair protein RadA; Provisional
Probab=39.14 E-value=36 Score=34.20 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
--|+.|-..=++.+|..++++|.+|.|++.+...+.
T Consensus 87 G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q 122 (446)
T PRK11823 87 GDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ 122 (446)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence 357788888899999999888999999998765443
No 280
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=39.06 E-value=2.2e+02 Score=23.49 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=27.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
-.++.|-...+..++..|.++|++|.++..+.
T Consensus 6 G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 6 GVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 35678888999999999999999998887664
No 281
>PRK13054 lipid kinase; Reviewed
Probab=39.00 E-value=1.3e+02 Score=28.38 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHH
Q 039043 271 KEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEA 350 (449)
Q Consensus 271 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ea 350 (449)
.+.+..+...|+..+..+.+....... .. . ..+.+ ......++ +|.-||=||++|+
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t~~~~------~a-~--------------~~a~~-~~~~~~d~--vvv~GGDGTl~ev 72 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVTWEKG------DA-A--------------RYVEE-ALALGVAT--VIAGGGDGTINEV 72 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEecCCC------cH-H--------------HHHHH-HHHcCCCE--EEEECCccHHHHH
Confidence 456666777788888776554433211 00 1 01111 12234455 9999999999998
Q ss_pred Hhh------C--CcEecccc
Q 039043 351 MVN------E--CQLVLLPN 362 (449)
Q Consensus 351 l~~------G--vP~l~~P~ 362 (449)
+.. + +|+-++|.
T Consensus 73 v~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 73 ATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHhhccCCCCcEEEEeC
Confidence 754 3 58999995
No 282
>PRK05595 replicative DNA helicase; Provisional
Probab=38.51 E-value=68 Score=32.26 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHHHH-hCCCEEEEEcCCccccc
Q 039043 3 PWFAMGHLTPFLHIANKLA-ERGHRISFLLPAKAITK 38 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~ 38 (449)
..|+.|-..=++.+|..++ +.|+.|.|++.+...+.
T Consensus 208 arpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 208 ARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred ecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 3578888999999998876 56999999988865433
No 283
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=38.29 E-value=61 Score=29.16 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHH----hCCceEEEecch
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARK----FGIKSVLYCIIS 129 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~----~giP~v~~~~~~ 129 (449)
......+++++||++|.-+ ...+...|+. .|+|+|+++-.+
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 3455667899999877543 5555555653 599999886655
No 284
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=38.21 E-value=46 Score=34.17 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
..+.+.+++.+||+||.++ ....+|+++|||++.++.
T Consensus 354 ~ei~~~i~~~~pdliiG~~--~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 354 QEVADAIAALEPELVLGTQ--MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHHhcCCCEEEECh--HHHHHHHHcCCCEEEecC
Confidence 3677788888999999986 345678999999986643
No 285
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.20 E-value=3.4e+02 Score=25.45 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=71.1
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
.++..++..+..+++..+.. .-+++.+......+-+=+ ||++ .=...|.+....|+..|+
T Consensus 160 ~~~~~l~~~~~Dlivlagym-------~il~~~~l~~~~~~iiNi-----------HpSl--LP~f~G~~~~~~ai~~G~ 219 (289)
T PRK13010 160 QILDLIETSGAELVVLARYM-------QVLSDDLSRKLSGRAINI-----------HHSF--LPGFKGARPYHQAHARGV 219 (289)
T ss_pred HHHHHHHHhCCCEEEEehhh-------hhCCHHHHhhccCCceee-----------Cccc--CCCCCCCCHHHHHHHcCC
Confidence 45666777777777776653 345555554433222222 5555 455568999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
....+-.+ .+..+...-+.+ --+.+... -|.++|.+.+.++-. .-|-+.++.+.
T Consensus 220 k~tG~TvH~v~~~lD~GpII~Q---~~v~V~~~-----dt~e~L~~r~~~~E~-------~~l~~ai~~~~ 275 (289)
T PRK13010 220 KLIGATAHFVTDDLDEGPIIEQ---DVERVDHS-----YSPEDLVAKGRDVEC-------LTLARAVKAFI 275 (289)
T ss_pred CeEEEEEEEEcCCCCCCCceEE---EEEEcCCC-----CCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 99888864 244444444443 34445555 489999999988633 45655555544
No 286
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=38.11 E-value=50 Score=32.99 Aligned_cols=37 Identities=8% Similarity=0.279 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
..+.+++++.+||++|.+. ....+|+++|+|++.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~--~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ--MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecc--hhhHHHHHcCCCEEEEeC
Confidence 4577788888999999987 234468999999987643
No 287
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=38.07 E-value=27 Score=31.79 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| +|. ..-+..=|.++|||+|.++.+..
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 799765 577 67788889999999999977554
No 288
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=38.05 E-value=1.8e+02 Score=30.42 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ +++|.|-| .+.+|.+.++|+|++.
T Consensus 64 ~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445 99998865 6679999999999984
No 289
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=37.95 E-value=83 Score=26.56 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEE
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVA 291 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 291 (449)
.+|+++||-......++...+.+|+..+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999998777788899999998776533333
No 290
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.21 E-value=2.3e+02 Score=28.25 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ +++|.|-| .+.+|.+.++|+|++-
T Consensus 64 ~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVA--VVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEE--EEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 455 99998866 5669999999999983
No 291
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=36.80 E-value=17 Score=33.80 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.8
Q ss_pred cCCchhHH--HHHhhCCcEeccccccchhhHHHH-HHhhhcceeEee
Q 039043 341 HCGSGSLS--EAMVNECQLVLLPNVGDQIINARL-MGEELKVGVEVE 384 (449)
Q Consensus 341 HgG~gs~~--eal~~GvP~l~~P~~~DQ~~na~~-v~~~~G~G~~~~ 384 (449)
=||||+++ -|-.+||=++.+-++.+|..+++. +... |+-..++
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~ 125 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVE 125 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCCcccE
Confidence 36887665 566779999999999999999988 6666 8883333
No 292
>PRK08322 acetolactate synthase; Reviewed
Probab=36.38 E-value=1.5e+02 Score=30.67 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.5
Q ss_pred cceeccCCch------hHHHHHhhCCcEeccc
Q 039043 336 GCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 336 ~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+++++|.|-| .+.+|...++|+|++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3389998865 6679999999999985
No 293
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=36.26 E-value=1e+02 Score=25.46 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 8 GHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPS-NLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 8 GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.+=.-++.+|+.|.+. |+++ + +++...+.+++. | +.+..+- .+ +.
T Consensus 14 ~dK~~l~~~a~~l~~ll~Gf~l-~-AT~gTa~~L~~~~G-----i~v~~vi----~~-~~-------------------- 61 (142)
T PRK05234 14 HKKDDLVAWVKAHKDLLEQHEL-Y-ATGTTGGLIQEATG-----LDVTRLL----SG-PL-------------------- 61 (142)
T ss_pred cchHHHHHHHHHHHHHhcCCEE-E-EeChHHHHHHhccC-----CeeEEEE----cC-CC--------------------
Confidence 3445678999999999 9995 3 455555666666 7 5554441 00 00
Q ss_pred hhcHHHHHHHHhhcCCCEEEE--cC---CC------ChHHHHHHhCCceEEE
Q 039043 85 DLTEPAIESVLRHLKPDFVFF--DF---TH------WLPPLARKFGIKSVLY 125 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~--D~---~~------~~~~~A~~~giP~v~~ 125 (449)
...+.+.+++++-+.|+||. |. .. .-..+|-..+||++..
T Consensus 62 -gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 62 -GGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred -CCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 01246778888889999997 42 11 1245688899999854
No 294
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.97 E-value=37 Score=32.17 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=36.9
Q ss_pred cCCCccceeccCCchhHHHHHhh----CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+++ +|+=||=||++.|+.. ++|++.+-.. .+|- + .+ ++++++.++++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGF-L--t~----~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGF-L--TE----AYLNQLDEAIDQVLA 123 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCcc-c--cc----CCHHHHHHHHHHHHc
Confidence 35666 9999999999999775 7788876431 1110 1 11 566777888888776
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
+
T Consensus 124 g 124 (305)
T PRK02649 124 G 124 (305)
T ss_pred C
Confidence 5
No 295
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=35.86 E-value=62 Score=29.20 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCcc--ccccCCCCCCCCCEE--EEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhh
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKA--ITKFEPSNLHRNLIT--FIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDL 86 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~g~~~~~i~--~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (449)
.-+..|++.|.++|.+|.+.+++.. .+.+...... .. +..+. . ..
T Consensus 124 e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~-------------~~ 172 (247)
T PF01075_consen 124 EKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAG---LQNPVINLA---------------G-------------KT 172 (247)
T ss_dssp HHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTT---HTTTTEEET---------------T-------------TS
T ss_pred HHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHh---cccceEeec---------------C-------------CC
Confidence 3468899999999988888887776 2222221100 10 11111 0 00
Q ss_pred cHHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecch
Q 039043 87 TEPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~ 129 (449)
-..++..+++. .|++|+-- .+.+.+|..+|+|+|.+....
T Consensus 173 ~l~e~~ali~~--a~~~I~~D-tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 173 SLRELAALISR--ADLVIGND-TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -HHHHHHHHHT--SSEEEEES-SHHHHHHHHTT--EEEEESSS
T ss_pred CHHHHHHHHhc--CCEEEecC-ChHHHHHHHHhCCEEEEecCC
Confidence 23456667774 49999753 457889999999999986544
No 296
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.74 E-value=3.3e+02 Score=27.00 Aligned_cols=140 Identities=11% Similarity=0.216 Sum_probs=74.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCC-ChhHHHhcCCCeEEEecc-------chhh
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESAL-PEGFEERVKGRGFIHGGW-------VQQQ 327 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~~~~~-------~pq~ 327 (449)
|.+++.-.||.... ....+++.|.+.+..+.+++...- ..-+ |..+. ......++...| +.|.
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A-----~~fi~~~~l~-~l~~~~V~~~~~~~~~~~~~~hi 77 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAA-----KKFVTPLTFQ-ALSGNPVSTDLWDPAAEAAMGHI 77 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhH-----HHHHhHHHHH-HhhCCceEccccccccCCCcchh
Confidence 44666666776533 344466666677877766665431 1111 11111 111122332212 2344
Q ss_pred hhhcCCCccceeccCCchhHH-------------HHHhhCCcEecccccc----c---hhhHHHHHHhhhcceeEeeecC
Q 039043 328 LILKHPSVGCFVTHCGSGSLS-------------EAMVNECQLVLLPNVG----D---QIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~-------------eal~~GvP~l~~P~~~----D---Q~~na~~v~~~~G~G~~~~~~~ 387 (449)
++...+++ .+|.-+=+||++ -++.+++|++++|-+. + -..|..++.+. |+-+.-....
T Consensus 78 ~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ii~P~~g 155 (399)
T PRK05579 78 ELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSR-GVEIIGPASG 155 (399)
T ss_pred hcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHC-CCEEECCCCc
Confidence 55555554 355555555544 3466799999999432 2 23456666665 7665433110
Q ss_pred --------CCCcccHHHHHHHHHHHhc
Q 039043 388 --------EDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 388 --------~~~~~~~~~l~~~i~~ll~ 406 (449)
..+..++++|...+.+.+.
T Consensus 156 ~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 156 RLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred cccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 1345788899888888774
No 297
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=35.49 E-value=1.3e+02 Score=31.23 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred eCCcccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccc-----hh-----hhhh
Q 039043 263 FGSECVLNK-EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWV-----QQ-----QLIL 330 (449)
Q Consensus 263 ~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~-----pq-----~~lL 330 (449)
.||...... .-.+.++..|+..|.+.++-+..... ..+...+ ..+++.+..-. -+ ..+-
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~---------~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI---------LPLYDALSQSTQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc---------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHc
Confidence 344444333 34666888888889988888766422 1111111 11233221111 11 1112
Q ss_pred cCCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 331 KHPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 331 ~~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
..+.+ +++|.|-| .+.+|...++|+|++.
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 23445 88888866 6779999999999985
No 298
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.42 E-value=34 Score=30.85 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=27.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
-.|+.|...-...++.+..++|.+|.|++.+...
T Consensus 32 G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~ 65 (234)
T PRK06067 32 GDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS 65 (234)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence 3577888888888888877889999999987654
No 299
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=35.35 E-value=32 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAIT 37 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 37 (449)
++.|++- -.|+++...|||+||-++....+-
T Consensus 7 gAsG~~G--s~i~~EA~~RGHeVTAivRn~~K~ 37 (211)
T COG2910 7 GASGKAG--SRILKEALKRGHEVTAIVRNASKL 37 (211)
T ss_pred ecCchhH--HHHHHHHHhCCCeeEEEEeChHhc
Confidence 4455543 367899999999999999877543
No 300
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=35.27 E-value=1.7e+02 Score=28.01 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=67.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
|.+=-+.+|.+. .+++.-++..|.+++..-...+ |. .+. -.-..|++..++|+.+|+
T Consensus 147 ktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~~---------~~-~~~------~~~~~y~~l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSPN---------PE-AEK------ELGARYVDLDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCCC---------hH-HHh------hcCceeccHHHHHHhCCE
Confidence 447777888777 4455555556777666543321 11 000 001367778899999999
Q ss_pred cceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 336 GCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 336 ~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
++-|+..+-= .....|+..++.+ +=|..+-.-.+.+.++.+.|.+++++
T Consensus 204 --i~l~~Plt~~----------------T~hLin~~~l~~m-k~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 204 --ISLHCPLTPE----------------TRHLINAEELAKM-KPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred --EEEeCCCChH----------------HhhhcCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHHh
Confidence 8777643211 2356788888887 88777665556777888888887764
No 301
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=35.24 E-value=22 Score=32.68 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
--||.|-..=+.+||.+|.++|+.|+|++.+.+...+..
T Consensus 112 G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 112 GPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 346777888899999999988999999998887766654
No 302
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=34.94 E-value=54 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
..+.+.++..++|+|++- . .+.|..+|+.+|+|++..
T Consensus 101 ~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 101 PVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 344555556689999863 3 677888999999999864
No 303
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.76 E-value=1.1e+02 Score=20.35 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 415 EIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 415 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.-.+.++++++.+..+-++-.++..+..+++.
T Consensus 12 qQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe 43 (60)
T COG3140 12 QQQKAVERIQELMAEGMSSGEAIALVAQELRE 43 (60)
T ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 34445555556666555555555555555543
No 304
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.69 E-value=1.7e+02 Score=30.55 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=20.9
Q ss_pred ceeccCCch------hHHHHHhhCCcEeccc
Q 039043 337 CFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 337 ~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
++++|.|-| .+.+|...++|||++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 388898865 5679999999999985
No 305
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.58 E-value=43 Score=27.47 Aligned_cols=37 Identities=16% Similarity=-0.060 Sum_probs=31.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
.+.++-+|-.-..-++..|+.+|.+|++++.....+.
T Consensus 9 ~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~ 45 (137)
T PRK02261 9 GVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEE 45 (137)
T ss_pred EeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 4678899999999999999999999999997765444
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=34.42 E-value=1.3e+02 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=31.8
Q ss_pred ccCCCCCCHHHHHHHHHHHH-hCCCEEEEEcCCccccc
Q 039043 2 YPWFAMGHLTPFLHIANKLA-ERGHRISFLLPAKAITK 38 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~ 38 (449)
+..+|.|-..-...||..|. ++|.+|.++..+.++..
T Consensus 105 vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 105 VGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred ECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 45678899999999999997 58999999999987754
No 307
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=34.38 E-value=46 Score=24.25 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=24.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEE
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFL 30 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~ 30 (449)
+..+.-.|...+-.+|+.|++.|..|..+
T Consensus 21 i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 21 IVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34566689999999999999999988755
No 308
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.35 E-value=28 Score=33.18 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=25.6
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 699876 566 67788889999999999866554
No 309
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=34.34 E-value=74 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCCCEEEEcC----CCChHHHHHHhCCceE
Q 039043 88 EPAIESVLRHLKPDFVFFDF----THWLPPLARKFGIKSV 123 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~----~~~~~~~A~~~giP~v 123 (449)
.+.+.+..++.++|+||..+ .-+.....++.|||++
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 45778888899999999987 4455678888899996
No 310
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=34.14 E-value=92 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=32.8
Q ss_pred cHHHHHHHHhhcCCCEEEEcC----CCChHHHHHHhCCceEEEecch
Q 039043 87 TEPAIESVLRHLKPDFVFFDF----THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~----~~~~~~~A~~~giP~v~~~~~~ 129 (449)
....+.+++++.+||+|++.. .-.+..+|.++|.|++.-+...
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 445677788888999999865 3456788999999999765543
No 311
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=34.13 E-value=82 Score=29.03 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCEEEE-----cC--CCChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFF-----DF--THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~-----D~--~~~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+.++..++|+|++ |. .--+..+|+.+|.|++.+.+-
T Consensus 101 ~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 101 KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 46778888999999996 33 345678999999999976543
No 312
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=33.99 E-value=76 Score=32.00 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
-|+.|-..=++.++..+.++|++|.|++.+...+.
T Consensus 102 ~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q 136 (454)
T TIGR00416 102 DPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ 136 (454)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH
Confidence 47788888899999999999999999988765443
No 313
>PRK13055 putative lipid kinase; Reviewed
Probab=33.18 E-value=1.5e+02 Score=28.42 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=45.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.+.++-.|......+.+..+...|+..+..+.+....... .-...+. +.......++
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~------~~a~~~~---------------~~~~~~~~d~-- 62 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEP------NSAKNEA---------------KRAAEAGFDL-- 62 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCC------ccHHHHH---------------HHHhhcCCCE--
Confidence 3445544443334455667777788777765543322100 0000000 0111223455
Q ss_pred eeccCCchhHHHHHhh------CCcEecccc
Q 039043 338 FVTHCGSGSLSEAMVN------ECQLVLLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal~~------GvP~l~~P~ 362 (449)
+|--||=||++|++.. .+|+-++|.
T Consensus 63 vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999998743 478899995
No 314
>PRK06849 hypothetical protein; Provisional
Probab=33.12 E-value=56 Score=32.08 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCcccc-ccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHH
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKAIT-KFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEP 89 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (449)
...+.+|+.|.++||+|+++......- ...+.- -.+..+|-+.. ..+...+
T Consensus 15 ~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~-----d~~~~~p~p~~-----------------------d~~~~~~ 66 (389)
T PRK06849 15 PAALELARLFHNAGHTVILADSLKYPLSRFSRAV-----DGFYTIPSPRW-----------------------DPDAYIQ 66 (389)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh-----hheEEeCCCCC-----------------------CHHHHHH
Confidence 357899999999999999997764321 111111 12344431100 0112345
Q ss_pred HHHHHHhhcCCCEEEEcC
Q 039043 90 AIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~ 107 (449)
.+.+++++.++|+||.-.
T Consensus 67 ~L~~i~~~~~id~vIP~~ 84 (389)
T PRK06849 67 ALLSIVQRENIDLLIPTC 84 (389)
T ss_pred HHHHHHHHcCCCEEEECC
Confidence 677788888999999765
No 315
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=33.00 E-value=48 Score=28.48 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=65.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.+.+-.+.+|.+. ..++..++..|.+++..-..... .. .... ..+ .+.+-.++++.++
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~-----~~---~~~~----~~~---~~~~l~ell~~aD 93 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKP-----EE---GADE----FGV---EYVSLDELLAQAD 93 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHH-----HH---HHHH----TTE---EESSHHHHHHH-S
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCCh-----hh---hccc----ccc---eeeehhhhcchhh
Confidence 3558889999888 56777777788887776544310 00 0110 112 4557788999999
Q ss_pred ccceeccCCchhHHHHHhhCCcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
+ ++.|. |.. .....|+..+..+ +=|..+-.-.+.+.++.+.|.+++++
T Consensus 94 i--v~~~~------------------plt~~T~~li~~~~l~~m-k~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 94 I--VSLHL------------------PLTPETRGLINAEFLAKM-KPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp E--EEE-S------------------SSSTTTTTSBSHHHHHTS-TTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred h--hhhhh------------------ccccccceeeeeeeeecc-ccceEEEeccchhhhhhhHHHHHHhh
Confidence 9 77774 543 3678888888887 76644443334667888888877754
No 316
>PRK13059 putative lipid kinase; Reviewed
Probab=32.88 E-value=1.4e+02 Score=28.10 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCCccceeccCCchhHHHHH---h---hCCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAM---V---NECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal---~---~GvP~l~~P~ 362 (449)
..++ +|.-||=||++|++ . .++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3455 99999999999874 2 3589999996
No 317
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.74 E-value=2.8e+02 Score=28.87 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ +++|.|-| .+++|...++|||++.
T Consensus 67 ~gv--~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGV--AIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 455 99998866 6679999999999984
No 318
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.54 E-value=1.4e+02 Score=28.71 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHH
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEP 89 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (449)
..-+..|++.|.++|.+|.+.++..-.+.+++.. +..+.... -.-..-..
T Consensus 194 ~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~----------------~~~~~~~~--------------l~~k~sL~ 243 (334)
T COG0859 194 LEHYAELAELLIAKGYQVVLFGGPDEEERAEEIA----------------KGLPNAVI--------------LAGKTSLE 243 (334)
T ss_pred HHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHH----------------HhcCCccc--------------cCCCCCHH
Confidence 3457788999999998888888775444444331 00000000 00001234
Q ss_pred HHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~ 129 (449)
++..+++ +.|++|+- ..+...+|..+|+|+|.+....
T Consensus 244 e~~~li~--~a~l~I~~-DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 244 ELAALIA--GADLVIGN-DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred HHHHHHh--cCCEEEcc-CChHHHHHHHcCCCEEEEECCC
Confidence 5556665 55888875 3456788899999999987544
No 319
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=32.46 E-value=2.7e+02 Score=28.92 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=22.3
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ +++|.|-| .+++|..-++|+|++-
T Consensus 65 ~gv--~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGV--VLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 445 99998866 6679999999999984
No 320
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=32.44 E-value=75 Score=31.63 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=26.2
Q ss_pred HHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEe
Q 039043 92 ESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~ 126 (449)
...+++.+||++|..+ -+..+|+++|||.+.+.
T Consensus 343 ~~~~~~~~pDl~Ig~s--~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGTT--PLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeCC--hhhHHHHHhCCCEEEec
Confidence 4556778999999884 35678999999998754
No 321
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=32.44 E-value=68 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=29.3
Q ss_pred cHHHHHHHHhhcCCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 87 TEPAIESVLRHLKPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
+...+...+++.++|+|++- . .+.|..+|+.+|+|++..
T Consensus 116 ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 116 IGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred HHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 33445555566689999863 3 678889999999999876
No 322
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=32.08 E-value=3.3e+02 Score=23.38 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=52.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEE---cCC-ccc--cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFL---LPA-KAI--TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFP 75 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~---~~~-~~~--~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~ 75 (449)
++-++.|-..-.+.+|-..+.+|++|.++ =.. ..- ..+++.+ +++.... .++.- . ..+ .
T Consensus 11 ~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~-----~~~~~~g----~g~~~--~-~~~-~-- 75 (173)
T TIGR00708 11 HTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHG-----VEFQVMG----TGFTW--E-TQN-R-- 75 (173)
T ss_pred ECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcC-----cEEEECC----CCCee--c-CCC-c--
Confidence 55678888888899999999999999655 222 111 1233323 6776665 22210 0 111 0
Q ss_pred cHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 76 LHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
. ..............+.+.+-++|+||-|-
T Consensus 76 -~-~~~~~~~~~~~~a~~~l~~~~~DlvVLDE 105 (173)
T TIGR00708 76 -E-ADTAIAKAAWQHAKEMLADPELDLVLLDE 105 (173)
T ss_pred -H-HHHHHHHHHHHHHHHHHhcCCCCEEEehh
Confidence 0 11222334445566677777899999997
No 323
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=31.99 E-value=2.2e+02 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=29.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhC-CCEEEEEcCCccccc
Q 039043 3 PWFAMGHLTPFLHIANKLAER-GHRISFLLPAKAITK 38 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~ 38 (449)
..|+.|-..=++.++..++.. |+.|.|++.+...+.
T Consensus 20 G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~ 56 (242)
T cd00984 20 ARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQ 56 (242)
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHH
Confidence 457788888889998888877 999999998875543
No 324
>PRK09213 pur operon repressor; Provisional
Probab=31.86 E-value=69 Score=29.74 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
...+...+++.++|+|++= . .+.|..+|..+|+|++..
T Consensus 119 ~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 119 GRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred HHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 3444555566689999863 3 678889999999999876
No 325
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.84 E-value=4.1e+02 Score=27.85 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=36.6
Q ss_pred eeccCCchhHHHH--HhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEA--MVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+... +.+|.+.-.. .....++.++.++-+ |+ .-..- -+.++|.+++++.++
T Consensus 481 V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA~a~-G~--~~~~v-----~~~~el~~al~~a~~ 542 (595)
T PRK09107 481 ILNNQYMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLAEAY-GA--VGIRC-----EKPGDLDDAIQEMID 542 (595)
T ss_pred EEeCCccHHHHHHHHHHhCCccccc-cCCCCCCHHHHHHHC-CC--eEEEE-----CCHHHHHHHHHHHHh
Confidence 8899999987633 3345321111 111246778877754 54 33332 378899999999875
No 326
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=31.73 E-value=1.4e+02 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=21.8
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
.....+.+.+.++++..+||.++.+-
T Consensus 42 ~rl~~I~~~l~~~i~~~~Pd~vaiE~ 67 (154)
T cd00529 42 SRLKTIYDGLNEVIDQFQPDVVAIER 67 (154)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 44555788999999999999999886
No 327
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=31.56 E-value=1.2e+02 Score=23.85 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 039043 372 LMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGF 440 (449)
Q Consensus 372 ~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 440 (449)
.+.+.|-++..-.... +|.++|.+.|.++.++. ..+.+-...+-+++...+-.++++..+
T Consensus 52 al~d~i~~a~~~~~~~----~s~~eIe~~ie~~~e~~-----~~~~~l~~~vl~el~~s~~~k~~~k~~ 111 (113)
T PF12363_consen 52 ALADIIYAATAHEKKR----PSREEIEDYIEDIIEDE-----DDIEELFDEVLKELKKSNFFKRAVKKF 111 (113)
T ss_pred HHHHHHHHHhcccCCC----CCHHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 3444446665555444 79999999999988871 236666777777777777666666544
No 328
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=31.55 E-value=1.3e+02 Score=23.67 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCC-CCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 8 GHLTPFLHIANKLAER--GHRISFLLPAKAITKFEP-SNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 8 GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~-~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.+=.-++.+|+.|.+- |+++. + ++...+.+++ .| +.+..+.+...+
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~-A-T~gTa~~L~~~~G-----i~v~~vk~~~~~------------------------ 57 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV-A-TGTTGLLIQEATG-----LTVNRMKSGPLG------------------------ 57 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE-E-echHHHHHHHhhC-----CcEEEEecCCCC------------------------
Confidence 4445678999999998 99984 4 4444555666 67 555544310000
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcCCC----C----h---HHHHHHhCCceEEE
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDFTH----W----L---PPLARKFGIKSVLY 125 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~~~----~----~---~~~A~~~giP~v~~ 125 (449)
..+.+.+++++-+.|+||..... . + ...|-..+||++..
T Consensus 58 --g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 58 --GDQQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred --chhHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 22467788888899999875421 1 1 34588889999853
No 329
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=31.51 E-value=2.2e+02 Score=26.54 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAIT 37 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 37 (449)
.++.|-+- -+|...|.+.||+||.++...-..
T Consensus 4 TGgTGlIG--~~L~~~L~~~gh~v~iltR~~~~~ 35 (297)
T COG1090 4 TGGTGLIG--RALTARLRKGGHQVTILTRRPPKA 35 (297)
T ss_pred eccccchh--HHHHHHHHhCCCeEEEEEcCCcch
Confidence 34555444 357889999999999999776443
No 330
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=31.37 E-value=95 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEcCC
Q 039043 14 LHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~ 33 (449)
.+||++|.++||+|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57889999999999998754
No 331
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.34 E-value=58 Score=25.18 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.|.+.|+++|.++|.+|.++=+--.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~ 41 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVD 41 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccC
Confidence 7999999999999999887744433
No 332
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.27 E-value=59 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCEEEEEcCC
Q 039043 14 LHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~ 33 (449)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56789999999999999543
No 333
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.18 E-value=2.1e+02 Score=22.70 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=34.1
Q ss_pred cccccccCCCCCeEEEEEeCCcccC-CHHHHHHHHHHHHhCCCCEEEE-EcCCCCCCccccCCChh
Q 039043 245 RWETLLGSFKSKSLIFCAFGSECVL-NKEQFQELVLGFELSGLPFLVA-LKPPVGHDTIESALPEG 308 (449)
Q Consensus 245 ~l~~~l~~~~~k~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~~i~~-~~~~~~~~~~~~~lp~~ 308 (449)
+..+|+.++ -+.+|.|-.... +++.+..++..+.+.+.--+.. ++.. ...+|+.
T Consensus 35 d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~ 90 (123)
T PF07905_consen 35 DPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEE 90 (123)
T ss_pred CHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHH
Confidence 355677664 445555655555 6677888999999888764444 4432 3466653
No 334
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.04 E-value=91 Score=29.40 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=38.5
Q ss_pred hhhcCCCccceeccCCchhHHHHHh----hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
++...+++ +|+=||=||++.|+. .++|++.+-... +|- + .+ ++++++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lGF-L--~~----~~~~~~~~~l~~ 120 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQGH--------------LGF-L--TQ----IPREYMTDKLLP 120 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecCC--------------CeE-e--ec----cCHHHHHHHHHH
Confidence 33345777 999999999999875 367887764311 221 1 12 567778888888
Q ss_pred HhcC
Q 039043 404 VIDD 407 (449)
Q Consensus 404 ll~~ 407 (449)
++++
T Consensus 121 i~~g 124 (296)
T PRK04539 121 VLEG 124 (296)
T ss_pred HHcC
Confidence 8765
No 335
>PHA02754 hypothetical protein; Provisional
Probab=30.81 E-value=86 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=19.9
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHhcC
Q 039043 400 AVKAVIDDDHSEVGKEIKENHAKWREFLRSER 431 (449)
Q Consensus 400 ~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~ 431 (449)
.|.+++.+ +.|++..+.+++.+...|
T Consensus 6 Ei~k~i~e------K~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 6 EIPKAIME------KDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHHHH------hHHHHHHHHHHHHHhhCc
Confidence 34555566 889999999999988654
No 336
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=30.78 E-value=50 Score=33.44 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=37.3
Q ss_pred cCCCccceeccCCchhHHHHHhh----CCcEeccccccchhhHHHHHHhhhc-ceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINARLMGEELK-VGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
..+++ +|+=||-||++.|+.. ++|++.+ | . | +|- + .+ ++++++.++|.+++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N------~-G~LGF-L--t~----i~~~e~~~~Le~il 316 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------S------M-GSLGF-M--TP----FHSEQYRDCLDAIL 316 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------e------C-CCcce-e--cc----cCHHHHHHHHHHHH
Confidence 45677 9999999999999774 4576654 2 1 2 232 2 22 67888888898888
Q ss_pred cC
Q 039043 406 DD 407 (449)
Q Consensus 406 ~~ 407 (449)
++
T Consensus 317 ~G 318 (508)
T PLN02935 317 KG 318 (508)
T ss_pred cC
Confidence 75
No 337
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=30.77 E-value=31 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCEEEEEcCCccccccCCCC
Q 039043 15 HIANKLAERGHRISFLLPAKAITKFEPSN 43 (449)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~~~~~~~~~g 43 (449)
.+|..|.+.||+|++++.....+.+.+.|
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~G 33 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEG 33 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCC
Confidence 47889999999999999874455666666
No 338
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=30.76 E-value=1e+02 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCEEEEcC---CCChHHHHHHh----CCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF---THWLPPLARKF----GIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~----giP~v~~~~~~ 129 (449)
...+.+++++||+||.-+ ...+...|+.. ++|+++++-.+
T Consensus 51 av~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 51 AVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 345788999999988654 44555666644 89999886655
No 339
>PRK13057 putative lipid kinase; Reviewed
Probab=30.30 E-value=94 Score=29.02 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.4
Q ss_pred cCCCccceeccCCchhHHHHH----hhCCcEecccc
Q 039043 331 KHPSVGCFVTHCGSGSLSEAM----VNECQLVLLPN 362 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal----~~GvP~l~~P~ 362 (449)
...++ +|.-||=||++|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 44566 99999999999885 34789999995
No 340
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.26 E-value=70 Score=23.01 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 12 PFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
--+.+|..|+++|.+||++...+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 357889999999999999986653
No 341
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.25 E-value=3.6e+02 Score=25.92 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=38.4
Q ss_pred hhhhhhcCCCccceec------cCC---chhHHHHHhhCCcEec---cccccchhhHHHHHHhhhcceeEeee
Q 039043 325 QQQLILKHPSVGCFVT------HCG---SGSLSEAMVNECQLVL---LPNVGDQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 325 pq~~lL~~~~~~~~I~------HgG---~gs~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~~G~G~~~~~ 385 (449)
+..++|..+++.++|- |+| ..-+.+||.+|+++|+ -|....-......+++. |+....+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ea 151 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRYEA 151 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEEee
Confidence 4456776555444655 443 3456899999999999 47644334455556666 77766553
No 342
>CHL00067 rps2 ribosomal protein S2
Probab=30.19 E-value=36 Score=30.74 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchHH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISPA 131 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~~ 131 (449)
.||+|| .|. ...+..=|.++|||+|.++-+...
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 699776 466 567888899999999998765543
No 343
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=30.12 E-value=33 Score=30.13 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=27.4
Q ss_pred CCCCHHH-HHHHHHHHHhCCCEEEEEcCCccccccC
Q 039043 6 AMGHLTP-FLHIANKLAERGHRISFLLPAKAITKFE 40 (449)
Q Consensus 6 ~~GH~~p-~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (449)
|.....- ...++++|.++||+|+++.++...+.+.
T Consensus 14 Gsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 14 GSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhh
Confidence 3344455 5899999999999999999998776554
No 344
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.11 E-value=2.3e+02 Score=26.10 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=50.6
Q ss_pred EEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEE
Q 039043 26 RISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFF 105 (449)
Q Consensus 26 ~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~ 105 (449)
+..+.+++.|.-++++.| ++...+. . .+. ... ......+.+.+++.+..+|++
T Consensus 171 ~~~v~~H~af~Y~~~~yg-----l~~~~~~-----~--~~~----eps-----------~~~l~~l~~~ik~~~v~~if~ 223 (266)
T cd01018 171 RAFMVYHPAWGYFARDYG-----LTQIPIE-----E--EGK----EPS-----------PADLKRLIDLAKEKGVRVVFV 223 (266)
T ss_pred CeEEEECchhHHHHHHcC-----CEEEecC-----C--CCC----CCC-----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455667777777788878 6665431 0 100 000 113356777889999999999
Q ss_pred cC---CCChHHHHHHhCCceEEEecch
Q 039043 106 DF---THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 106 D~---~~~~~~~A~~~giP~v~~~~~~ 129 (449)
+. .-.+-.+|+..|+|.+.+.+..
T Consensus 224 e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 224 QPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred cCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 87 3345688999999998876543
No 345
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=29.95 E-value=39 Score=30.78 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc
Q 039043 13 FLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
.-.|+++|++.||+|+++++..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4578999999999999998764
No 346
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=29.88 E-value=62 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEe
Q 039043 93 SVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~ 126 (449)
+.+++.+||++|+.+ -+..+|+++|||++.+.
T Consensus 349 ~~l~~~~pDllig~s--~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT--PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC--cchHHHHHcCCCEEEec
Confidence 455788999999985 24457899999999753
No 347
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=29.85 E-value=35 Score=31.41 Aligned_cols=32 Identities=34% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++-+..
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 699876 566 66778889999999999866544
No 348
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=29.83 E-value=3.4e+02 Score=22.90 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCCCCCHHHHH-HHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 4 WFAMGHLTPFL-HIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 4 ~~~~GH~~p~l-~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
+...+.+..++ .+|+.|+++|++|.=++.......-.. ... .....++-...-.+..+. .....--..-..
T Consensus 6 ~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~---~~~-m~l~dl~~G~~~~IsQ~L----G~gs~gCrLD~~ 77 (159)
T PF10649_consen 6 YDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGG---RCD-MDLRDLPSGRRIRISQDL----GPGSRGCRLDPG 77 (159)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCC---ccc-eEEEECCCCCEEEEeecc----CCCCcccccCHH
Confidence 34445555554 579999999999877665542211111 111 555555511000111110 000111111122
Q ss_pred HHhhcHHHHHHHHhhcCCCEEEEcC----------CCChHHHHHHhCCceEEEecchHH
Q 039043 83 AMDLTEPAIESVLRHLKPDFVFFDF----------THWLPPLARKFGIKSVLYCIISPA 131 (449)
Q Consensus 83 ~~~~~~~~~~~ll~~~~pD~vI~D~----------~~~~~~~A~~~giP~v~~~~~~~~ 131 (449)
.+......+..-+.+ .||++|..- .......|-..|||+++..+....
T Consensus 78 ~La~A~~~l~~al~~-~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 78 ALAEASAALRRALAE-GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 222233334444433 599998642 122245566789999987775543
No 349
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=29.82 E-value=85 Score=27.32 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=28.9
Q ss_pred cHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEE
Q 039043 87 TEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~ 125 (449)
+...+.+.++..++|.|++-. .+.|..+|..+|+|++..
T Consensus 61 i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~v 102 (187)
T PRK13810 61 IARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIV 102 (187)
T ss_pred HHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 334555566667899999743 567788999999999864
No 350
>PRK08760 replicative DNA helicase; Provisional
Probab=29.74 E-value=78 Score=32.15 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHHHHh-CCCEEEEEcCCcccc
Q 039043 3 PWFAMGHLTPFLHIANKLAE-RGHRISFLLPAKAIT 37 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~ 37 (449)
..|+.|-..=++.+|...+. .|+.|.|++.+...+
T Consensus 236 arPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 236 ARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred eCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 45888999999999998875 589999998876543
No 351
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.69 E-value=83 Score=28.59 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHhhcCCCEEEEcC-CCC--hHH-HHHHhCCceEEEec
Q 039043 93 SVLRHLKPDFVFFDF-THW--LPP-LARKFGIKSVLYCI 127 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~~~--~~~-~A~~~giP~v~~~~ 127 (449)
+.|...+||+||... ... ... +-+.+|+|++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 345566999999876 332 222 33448999988754
No 352
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.55 E-value=61 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=25.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCC
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 33 (449)
+.+..-|-.-+..+|..|.++||+|.++...
T Consensus 7 ~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 7 CVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred eeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 4567778888999999999999999988443
No 353
>PRK05858 hypothetical protein; Provisional
Probab=29.53 E-value=3e+02 Score=28.41 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+.+ +++|.|-| .+++|-..++|||++.
T Consensus 67 ~~gv--~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 67 VPGV--AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCeE--EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 88888865 6779999999999975
No 354
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.43 E-value=42 Score=31.03 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=23.5
Q ss_pred CCCccceeccCCchhHHHHHh------hCCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAMV------NECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~------~GvP~l~~P~ 362 (449)
.+++ +|+-||-||+..|+. .++|++.+-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 4566 999999999999986 4788887653
No 355
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.39 E-value=74 Score=31.78 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.++.+++++.+||++|..........|.++|+|++-+
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~~~~~~~~~~~gip~~~~ 399 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHGGLFPDATVYLGIPVVPL 399 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCCCccHHHHHhcCCCEEec
Confidence 4688889999999999765444556678899999865
No 356
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=29.36 E-value=23 Score=28.79 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
-.+=++..|+++||+|++++++.....++-
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 346678999999999999999998877653
No 357
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.23 E-value=44 Score=30.53 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCccceeccCCchhHHHHHhh----CCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~ 362 (449)
.+++ +|+-||=||+..|+.. ++|++.+-.
T Consensus 25 ~~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 25 EADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred cCCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 3566 9999999999988664 678887653
No 358
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=29.14 E-value=1.5e+02 Score=19.46 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 414 KEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++=.+.++++++.+..+-++..|+..+.+.++.
T Consensus 11 eeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe 43 (51)
T PF03701_consen 11 EEQQQAVERIQELMAQGMSSGEAIAIVAQEIRE 43 (51)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344556667777777666666677766666654
No 359
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=29.14 E-value=2.2e+02 Score=26.63 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCCccceeccCCchhHHHHHhh--------CCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVN--------ECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~--------GvP~l~~P~ 362 (449)
..++ +|.-||=||++|++.. .+|+-++|.
T Consensus 52 ~~d~--vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 52 GVST--VIAGGGDGTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred CCCE--EEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 3455 9999999999988622 247899995
No 360
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=29.12 E-value=3.3e+02 Score=28.52 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.9
Q ss_pred ccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 335 VGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 335 ~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+++++|.|-| .+.+|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499999866 5668999999999986
No 361
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=28.94 E-value=84 Score=26.96 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=22.3
Q ss_pred HhhcCCCEEEEcC-CCC-hHHHHHHhCCceEEEec
Q 039043 95 LRHLKPDFVFFDF-THW-LPPLARKFGIKSVLYCI 127 (449)
Q Consensus 95 l~~~~pD~vI~D~-~~~-~~~~A~~~giP~v~~~~ 127 (449)
+.+.+||+||... ... ...--++.|+|++.+..
T Consensus 56 l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 56 IVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 4556999999865 332 33445678999987643
No 362
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.94 E-value=3.5e+02 Score=22.70 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=80.8
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.|-|=+||.+ +-+.+...+..|+..+.++-..+-+. ...|+.... +..-.....+++
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSA-------HRTPe~m~~--------------ya~~a~~~g~~v 60 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSA-------HRTPEKMFE--------------YAEEAEERGVKV 60 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEec-------cCCHHHHHH--------------HHHHHHHCCCeE
Confidence 4556688876 66778888888999998854433221 223332110 011112234444
Q ss_pred eeccCCchh---HHHHHhhCCcEecccccc---chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCch
Q 039043 338 FVTHCGSGS---LSEAMVNECQLVLLPNVG---DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSE 411 (449)
Q Consensus 338 ~I~HgG~gs---~~eal~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 411 (449)
+|.-.|.-- =+-|...-+|+|.+|... +-.+--..++++ --|+-+-.-.=++..+..-|+..|-. +.|
T Consensus 61 iIAgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQM-P~GvPVaTvaIg~a~NAallAa~ILa-~~d---- 134 (162)
T COG0041 61 IIAGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQM-PAGVPVATVAIGNAANAALLAAQILA-IKD---- 134 (162)
T ss_pred EEecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHhcC-CCCCeeEEEeecchhhHHHHHHHHHc-CCC----
Confidence 666555311 123455579999999863 334445566666 66764432210112455666666644 345
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 039043 412 VGKEIKENHAKWREFLRS 429 (449)
Q Consensus 412 ~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.+++..++
T Consensus 135 --~~l~~kl~~~r~~~~~ 150 (162)
T COG0041 135 --PELAEKLAEFREAQTE 150 (162)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 8999999999988874
No 363
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.94 E-value=3.8e+02 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=22.2
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ +++|.|-| .+++|-..++|+|++-
T Consensus 72 ~gv--~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGI--CFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEE--EEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 455 99999866 5669999999999874
No 364
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=28.78 E-value=27 Score=32.84 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPS 42 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 42 (449)
-.+.||+.|.+.|.+|+++|.+.+.+.+++.
T Consensus 64 GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 64 GAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred HHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 4678999999999999999999887776655
No 365
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.63 E-value=1.5e+02 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 414 KEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
.++|.+..++++.++.-+|-.+.+++-.+.++.++
T Consensus 31 ~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le 65 (83)
T PF07544_consen 31 GSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELE 65 (83)
T ss_pred HHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Confidence 45788888888899988888888888887777653
No 366
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=28.57 E-value=3.7e+02 Score=22.84 Aligned_cols=87 Identities=8% Similarity=0.016 Sum_probs=43.1
Q ss_pred cEEEEcCccccccchHHHhhhhcCCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHH
Q 039043 201 DAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLG 280 (449)
Q Consensus 201 ~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~a 280 (449)
...++.+.++.-......+...++ ++..+|-..... +....+++.+.+...... +|+|++|+-.+ + .-+.+.
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pd-iv~vglG~PkQ---E--~~~~~~ 121 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYF-DEEEEEAIINRINASGPD-IVFVGLGAPKQ---E--RWIARH 121 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCC-ChhhHHHHHHHHHHcCCC-EEEEECCCCHH---H--HHHHHH
Confidence 344555554433334444444443 556665333221 112334455555544433 99999986641 1 112222
Q ss_pred HHhCCCCEEEEEcCC
Q 039043 281 FELSGLPFLVALKPP 295 (449)
Q Consensus 281 l~~~~~~~i~~~~~~ 295 (449)
...++..+++.+|..
T Consensus 122 ~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 122 RQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHCCCCEEEEECch
Confidence 345677767777653
No 367
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=28.56 E-value=1.8e+02 Score=27.10 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=49.1
Q ss_pred CEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEE
Q 039043 25 HRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVF 104 (449)
Q Consensus 25 h~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI 104 (449)
.+..+.+++.+.-+++..| ++...+. +...+.+ .. ......+.+.+++.+..+|+
T Consensus 171 ~~~~v~~H~af~Y~~~~~g-----l~~~~~~-----~~~~~~e----ps-----------~~~l~~l~~~ik~~~v~~if 225 (282)
T cd01017 171 GKTFVTQHAAFGYLARRYG-----LKQIAIV-----GVSPEVE----PS-----------PKQLAELVEFVKKSDVKYIF 225 (282)
T ss_pred CCeEEEecccHHHHHHHCC-----CeEEecc-----cCCCCCC----CC-----------HHHHHHHHHHHHHcCCCEEE
Confidence 3445666777777778777 6655432 1111111 00 01235677788899999999
Q ss_pred EcC-CC--ChHHHHHHhCCceEEEec
Q 039043 105 FDF-TH--WLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 105 ~D~-~~--~~~~~A~~~giP~v~~~~ 127 (449)
++. .. .+-.+|+..|+|.+.+.+
T Consensus 226 ~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 226 FEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred EeCCCChHHHHHHHHHcCCcEEEecc
Confidence 988 33 346789999999986543
No 368
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=28.43 E-value=81 Score=32.39 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+++++++.+||++|.++ .+..+|+++|||++.+
T Consensus 427 ~~l~~~l~~~~~DlliG~s--~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 427 WHLRSLVFTEPVDFLIGNS--YGKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHhhcCCCEEEECc--hHHHHHHHcCCCEEEe
Confidence 3567788888999999986 2467899999999865
No 369
>PRK07524 hypothetical protein; Provisional
Probab=28.26 E-value=3.6e+02 Score=27.81 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=21.9
Q ss_pred CCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 333 PSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 333 ~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+.+ ++.|.|-| ++++|...++|+|++-
T Consensus 65 ~gv--~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 65 PGV--CFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred CeE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445 88888876 6679999999999874
No 370
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=28.24 E-value=40 Score=30.36 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.+.-+..
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 699776 566 66778888999999999866544
No 371
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=28.20 E-value=2.2e+02 Score=27.92 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=52.7
Q ss_pred hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcce-eEeeecCCCCcccHHHHHHHHHHHh
Q 039043 327 QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVG-VEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G-~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
..++.++++ +|.- =+=++--|++.|+|.+++-+. +-+...++++ |+- ..++..+ ++.+.+...+.+.+
T Consensus 280 ~~~l~~~dl--~Vg~-R~HsaI~al~~g~p~i~i~Y~---~K~~~l~~~~-gl~~~~~~i~~----~~~~~l~~~~~e~~ 348 (385)
T COG2327 280 GGILAACDL--IVGM-RLHSAIMALAFGVPAIAIAYD---PKVRGLMQDL-GLPGFAIDIDP----LDAEILSAVVLERL 348 (385)
T ss_pred HHHhccCce--EEee-hhHHHHHHHhcCCCeEEEeec---HHHHHHHHHc-CCCcccccCCC----CchHHHHHHHHHHH
Confidence 457777777 6631 123677899999999999874 4455666666 764 3344444 89999999999888
Q ss_pred cCCCchhHHHHHHH
Q 039043 406 DDDHSEVGKEIKEN 419 (449)
Q Consensus 406 ~~~~~~~~~~~~~~ 419 (449)
++. ++.+++
T Consensus 349 ~~~-----~~~~~~ 357 (385)
T COG2327 349 TKL-----DELRER 357 (385)
T ss_pred hcc-----HHHHhh
Confidence 864 555544
No 372
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.09 E-value=3.2e+02 Score=28.43 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=21.9
Q ss_pred ccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 335 VGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 335 ~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+++++|.|-| .+.+|...++|||++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998876 5679999999999985
No 373
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.07 E-value=61 Score=28.90 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHhhcCCCEEEEcC-C--CChHHHHHHhCCceEEEecch
Q 039043 93 SVLRHLKPDFVFFDF-T--HWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~--~~~~~~A~~~giP~v~~~~~~ 129 (449)
+.+...+||+||... . .....-....++|++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 446667899999887 4 345666678899999886654
No 374
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=27.92 E-value=1e+02 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.016 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~ 125 (449)
...+.+.+++.++|+||+-. ...+..+|+.+|+|++..
T Consensus 40 ~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 40 IDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred HHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 34444445556789999643 677889999999999753
No 375
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.78 E-value=2.5e+02 Score=29.48 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=21.8
Q ss_pred ccceeccCC------chhHHHHHhhCCcEeccc
Q 039043 335 VGCFVTHCG------SGSLSEAMVNECQLVLLP 361 (449)
Q Consensus 335 ~~~~I~HgG------~gs~~eal~~GvP~l~~P 361 (449)
++++++|.| .+.+++|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444788877 567889999999999985
No 376
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=27.76 E-value=3e+02 Score=26.99 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=38.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
|.+-.|.+|.++ ..+...++..|.+++..-... .. .. .. ..+.+-.++++.+++
T Consensus 117 ktvGIIG~G~IG-------~~vA~~l~a~G~~V~~~dp~~-------~~-~~--------~~---~~~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVG-------RRLQARLEALGIKTLLCDPPR-------AD-RG--------DE---GDFRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCcc-------cc-cc--------cc---cccCCHHHHHhhCCE
Confidence 558899999888 556666677888876542110 00 00 01 135677789999999
Q ss_pred cceeccCC
Q 039043 336 GCFVTHCG 343 (449)
Q Consensus 336 ~~~I~HgG 343 (449)
++.|.-
T Consensus 171 --I~lh~P 176 (378)
T PRK15438 171 --LTFHTP 176 (378)
T ss_pred --EEEeCC
Confidence 886654
No 377
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.61 E-value=2.9e+02 Score=28.71 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccc----------hhhhhhcCCCccceeccCCc
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWV----------QQQLILKHPSVGCFVTHCGS 344 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~----------pq~~lL~~~~~~~~I~HgG~ 344 (449)
+.++..|+..|.+.++-+..... -.+...+...++....-. -+..+-..+.+ +++|.|-
T Consensus 12 ~~l~~~L~~~Gv~~vFgipG~~~---------~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v--~~~t~Gp 80 (561)
T PRK06048 12 RAIIKCLEKEGVEVIFGYPGGAI---------IPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGV--CVATSGP 80 (561)
T ss_pred HHHHHHHHHcCCCEEEECCCcch---------HHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeE--EEECCCC
Q ss_pred h------hHHHHHhhCCcEecc-------------ccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 345 G------SLSEAMVNECQLVLL-------------PNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 345 g------s~~eal~~GvP~l~~-------------P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
| .+.+|...++|||++ ....||....+-+.+. ..... +++++.+.|++.+
T Consensus 81 G~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~-----s~~v~------~~~~i~~~i~~A~ 149 (561)
T PRK06048 81 GATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKH-----NYLVQ------DAKDLPRIIKEAF 149 (561)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceE-----EEEeC------CHHHHHHHHHHHH
Q ss_pred c
Q 039043 406 D 406 (449)
Q Consensus 406 ~ 406 (449)
.
T Consensus 150 ~ 150 (561)
T PRK06048 150 H 150 (561)
T ss_pred H
No 378
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.60 E-value=53 Score=29.28 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCcc-ccccCCC---CC-------CCCCEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKA-ITKFEPS---NL-------HRNLITFIPVSVPRVDGLPPGAETTNDVPFP 75 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~-~~~~~~~---g~-------~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~ 75 (449)
.|-..=+..++--+-..||+|++++++.- ++.+.++ +- ..+ +.|.++. .+.
T Consensus 39 tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~-l~~~~~~----------~~~------- 100 (235)
T COG2874 39 TGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGR-LLFFPVN----------LEP------- 100 (235)
T ss_pred ccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcce-eEEEEec----------ccc-------
Confidence 35555566777778889999999999854 3444433 20 001 2333321 010
Q ss_pred cHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh
Q 039043 76 LHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL 111 (449)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~ 111 (449)
..+-........+.+.+-++.++-|+||.|+ +..+
T Consensus 101 -~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 101 -VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred -cccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh
Confidence 1112233333455666667778999999998 5433
No 379
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=27.54 E-value=1.8e+02 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.5
Q ss_pred cHHHHHHHHhhcCCCEEEEcC-C--------------CC--------hHHHHHHhCCceEEEecchH
Q 039043 87 TEPAIESVLRHLKPDFVFFDF-T--------------HW--------LPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~-~--------------~~--------~~~~A~~~giP~v~~~~~~~ 130 (449)
..+.+..-+++++||+||... + +. .-..++.+|||.+.+.+...
T Consensus 236 l~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 236 LKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 444566677788999999643 1 11 12457889999998866554
No 380
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=27.51 E-value=1.7e+02 Score=23.77 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=24.8
Q ss_pred EEEeccchh-hhh-hcCCCccceeccCCchhHHHHHhh----------CCcEeccc
Q 039043 318 FIHGGWVQQ-QLI-LKHPSVGCFVTHCGSGSLSEAMVN----------ECQLVLLP 361 (449)
Q Consensus 318 ~~~~~~~pq-~~l-L~~~~~~~~I~HgG~gs~~eal~~----------GvP~l~~P 361 (449)
.+..+.... ..+ +..++. .++.-||.||+.|.... .+|++.+-
T Consensus 37 ~~~~~~~~~Rk~~m~~~sda-~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 37 LIIVDDMFERKEIMIESSDA-FIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp EEEESSHHHHHHHHHHHESE-EEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred eeEeCChHHHHHHHHHhCCE-EEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 333344443 444 444443 47778899999987432 34998876
No 381
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=27.41 E-value=59 Score=33.09 Aligned_cols=51 Identities=18% Similarity=0.110 Sum_probs=33.0
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEE----EcC-CCChHHHHHHhCCceEEEecch
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVF----FDF-THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI----~D~-~~~~~~~A~~~giP~v~~~~~~ 129 (449)
+-.-+.+.+...++..++....|-+| ||- .++.+.+|-.+++|.|.++..+
T Consensus 59 ysL~sRelIAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGp 114 (521)
T PF00920_consen 59 YSLPSRELIADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGP 114 (521)
T ss_dssp GHHHHHHHHHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE-----
T ss_pred hhhhhHHHHHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCC
Confidence 34444455778889999999999877 577 7888899999999999876544
No 382
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.41 E-value=77 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.086 Sum_probs=24.9
Q ss_pred CCCEEEEcC-CCChHHHHHHhCCceEEEec
Q 039043 99 KPDFVFFDF-THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 99 ~pD~vI~D~-~~~~~~~A~~~giP~v~~~~ 127 (449)
+..+||+|. ...+..-|++.|||++.+..
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~ 58 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDR 58 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecc
Confidence 467899999 88899999999999987644
No 383
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=27.33 E-value=1.1e+02 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhcCCCEEEEcC----CCChHHHHHHhCCceEEEec
Q 039043 87 TEPAIESVLRHLKPDFVFFDF----THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~----~~~~~~~A~~~giP~v~~~~ 127 (449)
..+.+.+++++.+||+|++.. .-.+..+|.++|.|++.-..
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 345667777888999999866 24457889999999986544
No 384
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=27.28 E-value=46 Score=28.19 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEecccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P~ 362 (449)
.+.+ +++|+|-| .+.||...++|||++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3455 89998866 55699999999999953
No 385
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=27.19 E-value=4.5e+02 Score=23.46 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=32.1
Q ss_pred ccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEE
Q 039043 246 WETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFL 289 (449)
Q Consensus 246 l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 289 (449)
+.+++... .|.+.||=+-|.........++.-++|++.|..+.
T Consensus 24 i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 24 IANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 44455543 45699999988887777788889999999987644
No 386
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=27.05 E-value=56 Score=30.72 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=35.9
Q ss_pred cCCCccceeccCCchhHHHHHhh----CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+++ +|+-||-||+++++.. ++|++.+-.. .+|- +. + .+.+++.+.|.++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGF-L~--~----~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGF-IT--D----IPLDDMQETLPPMLA 118 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccc-cc--c----CCHHHHHHHHHHHHc
Confidence 45677 9999999999999874 6677765421 1121 11 1 566777777777766
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
.
T Consensus 119 g 119 (291)
T PRK02155 119 G 119 (291)
T ss_pred C
Confidence 4
No 387
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=27.01 E-value=43 Score=29.29 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.+..+..
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 799876 465 66777888999999999876553
No 388
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=27.01 E-value=1.6e+02 Score=24.97 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGFELS 284 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~ 284 (449)
+.+..+|+++||-.....+.+...+..|+..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 4455899999998865667777777777664
No 389
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.95 E-value=5.3e+02 Score=24.11 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh-hhhcCCC-ccceec--cCC
Q 039043 268 VLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ-LILKHPS-VGCFVT--HCG 343 (449)
Q Consensus 268 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~-~lL~~~~-~~~~I~--HgG 343 (449)
..+.+.+..++++-++.+.++|+.+..... ...+ ++. .+.+.. .+....+ +-+++| ||+
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~-----~~~~-~~~-----------~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAI-----KYMG-GYK-----------MAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchh-----hccC-cHH-----------HHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 367888999999999999999998766421 1111 010 112221 2333344 333555 775
Q ss_pred c-hhHHHHHhhCCcEecccc
Q 039043 344 S-GSLSEAMVNECQLVLLPN 362 (449)
Q Consensus 344 ~-gs~~eal~~GvP~l~~P~ 362 (449)
. -.+.+|+..|.-.|.+=-
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~ 105 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDG 105 (282)
T ss_pred CHHHHHHHHHcCCCEEEECC
Confidence 4 667799999998887654
No 390
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.82 E-value=68 Score=32.40 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.++.+.+++.+||++|+.. ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~~pDllig~~--~~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 385 LELEEIIEKYKPDIILTGI--REGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHHhcCCCEEEecC--CcchhhhhcCCCEEEc
Confidence 3577788889999999886 2255889999999875
No 391
>PRK04328 hypothetical protein; Provisional
Probab=26.73 E-value=3.7e+02 Score=24.43 Aligned_cols=96 Identities=6% Similarity=-0.043 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc----cCCCCCC------CCCEEEEEecCCCCCCCCCCCCCCCCCC
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITK----FEPSNLH------RNLITFIPVSVPRVDGLPPGAETTNDVP 73 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~----~~~~g~~------~~~i~~~~~p~~~~~~l~~~~~~~~~~~ 73 (449)
-|+.|-..=.+.++.+-.++|+.+.|++.+...+. +++.|.. .+.+.+...... ....... .
T Consensus 31 ~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~---~~~~~~~---~-- 102 (249)
T PRK04328 31 GPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTG---GIGSAAK---R-- 102 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccc---ccccccc---c--
Confidence 46677777677766666677999999998655433 2233421 011334333210 0000000 0
Q ss_pred CCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 74 FPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
..+...-..........+.+.+++.++++||.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDS 136 (249)
T PRK04328 103 EKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDS 136 (249)
T ss_pred ccccccCcccHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 0000000011233556677788888999999998
No 392
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=26.65 E-value=2.6e+02 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCC
Q 039043 270 NKEQFQELVLGFELSGLPFLVALKPP 295 (449)
Q Consensus 270 ~~~~~~~~~~al~~~~~~~i~~~~~~ 295 (449)
-|-++..++.+|.+.|+.|.+.+...
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 45668889999999999988877665
No 393
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.53 E-value=64 Score=27.41 Aligned_cols=87 Identities=21% Similarity=0.322 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTA 83 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (449)
+|+.|++-- .++++|.++||+|+.++....+..- ..+ ++.+...+ .
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~-~~~-----~~~~~~d~-----~--------------------- 49 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED-SPG-----VEIIQGDL-----F--------------------- 49 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH-CTT-----EEEEESCT-----T---------------------
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc-ccc-----cccceeee-----h---------------------
Confidence 566676654 4899999999999999987643222 223 66665531 0
Q ss_pred HhhcHHHHHHHHhhcCCCEEEEcC-CCC--------hHHHHHHhCCceEEEecch
Q 039043 84 MDLTEPAIESVLRHLKPDFVFFDF-THW--------LPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 84 ~~~~~~~~~~ll~~~~pD~vI~D~-~~~--------~~~~A~~~giP~v~~~~~~ 129 (449)
-.+.+.+.++ +.|.||+-. ... ...++++.|++.+++.++.
T Consensus 50 ---d~~~~~~al~--~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 50 ---DPDSVKAALK--GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp ---CHHHHHHHHT--TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred ---hhhhhhhhhh--hcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 0134455555 468888755 221 1344567788887764433
No 394
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.52 E-value=5.3e+02 Score=25.10 Aligned_cols=125 Identities=13% Similarity=0.106 Sum_probs=71.8
Q ss_pred CCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchh-hhhhcCCCccceeccC
Q 039043 264 GSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQ-QLILKHPSVGCFVTHC 342 (449)
Q Consensus 264 GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq-~~lL~~~~~~~~I~Hg 342 (449)
|-...-+.+++..++..++..+.+++..-...++. -|.+|. ++-. .|... .++.....+..+-+=-
T Consensus 124 Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRt------sp~~f~------g~~~-e~l~~L~~~~~~~Gl~~~t~v~ 190 (360)
T PRK12595 124 GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRT------SPYDFQ------GLGV-EGLKILKQVADEYGLAVISEIV 190 (360)
T ss_pred ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCC------CCcccc------CCCH-HHHHHHHHHHHHcCCCEEEeeC
Confidence 55555678889999999999998887765444321 111111 0001 11111 2233334443344444
Q ss_pred CchhHHHHHhhCCcEecccc-ccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 343 GSGSLSEAMVNECQLVLLPN-VGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 343 G~gs~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..-++..+..+ ++++-+|- ...|..-...+... |.-+.+...- ..|.+++..+++.+.+
T Consensus 191 d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~G~---~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 191 NPADVEVALDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKRGL---SATIEEFIYAAEYIMS 250 (360)
T ss_pred CHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeCCC---CCCHHHHHHHHHHHHH
Confidence 44555566666 88888884 34445555666655 6666666552 1488888888888875
No 395
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=26.49 E-value=43 Score=28.86 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
|.....-...+.++|+++|++|.++.++....++..
T Consensus 9 Gs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 9 GSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 334455677899999999999999999988777653
No 396
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=26.45 E-value=1.2e+02 Score=25.16 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh---------------HHHHHHhCCceEEEecc
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFFDF-THWL---------------PPLARKFGIKSVLYCII 128 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~---------------~~~A~~~giP~v~~~~~ 128 (449)
.......+.+.+.+++++.+||.++.+. ++.. ..+|...|+|+..+.+.
T Consensus 39 ~~~Rl~~I~~~l~~li~~~~P~~vaiE~~f~~~n~~s~~~l~~arGvi~l~~~~~~i~v~~y~P~ 103 (149)
T PF02075_consen 39 LPERLKEIYEELEELIEEYNPDEVAIEEIFFGKNPKSALKLGQARGVILLAAAQRGIPVFEYTPS 103 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEeehhhhccCHHHHHHHHHHHHHHHHHHHHcCCeEEEECHH
Confidence 3455556888999999999999999876 4332 23446677887765443
No 397
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=26.42 E-value=63 Score=27.17 Aligned_cols=91 Identities=21% Similarity=0.309 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhC-CCEEEEEcCCc---cccc----cCCCCCCCCCE-EEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 12 PFLHIANKLAER-GHRISFLLPAK---AITK----FEPSNLHRNLI-TFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 12 p~l~la~~L~~r-Gh~Vt~~~~~~---~~~~----~~~~g~~~~~i-~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
-++..|++|++. |.+|+.++-.+ ..+. +...| + +.+.+..+ .+. . .
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G-----~d~v~~~~~~---~~~-------~----------~ 73 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG-----ADKVYHIDDP---ALA-------E----------Y 73 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT-----ESEEEEEE-G---GGT-------T----------C
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC-----CcEEEEecCc---ccc-------c----------c
Confidence 467889999875 77877766543 2222 33356 3 34444311 000 0 0
Q ss_pred HHhhcHHHHHHHHhhcCCCEEEEcC----CCChHHHHHHhCCceEEEec
Q 039043 83 AMDLTEPAIESVLRHLKPDFVFFDF----THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 83 ~~~~~~~~~~~ll~~~~pD~vI~D~----~~~~~~~A~~~giP~v~~~~ 127 (449)
..+.....+.+++++.+||+|+... .-.+..+|.++|.|++.-..
T Consensus 74 ~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp -HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 1222446788888889999999765 23456788999999997644
No 398
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=26.30 E-value=3.3e+02 Score=25.81 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.|.+-.|.+|+++ ..++..++..|.+++..-.... +. ...+ .+.+-.++|+.+|
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~d~~~~---------~~-------~~~~---~~~~l~ell~~sD 198 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYYSTSGK---------NK-------NEEY---ERVSLEELLKTSD 198 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEEECCCcc---------cc-------ccCc---eeecHHHHhhcCC
Confidence 3558999999887 4455555566777665422110 00 0011 3457788999999
Q ss_pred ccceeccCCchhHHHHHhhCCcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
+ ++-|. |... ....|+..+..+ +=|..+-.-.+.+.++.+.|.+++++
T Consensus 199 v--v~lh~------------------Plt~~T~~li~~~~~~~M-k~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 199 I--ISIHA------------------PLNEKTKNLIAYKELKLL-KDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred E--EEEeC------------------CCCchhhcccCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHHc
Confidence 9 77764 5543 356777777776 66655544445667777777777754
No 399
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.22 E-value=1.1e+02 Score=27.05 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=31.2
Q ss_pred cHHHHHHHHhhcCCCEEEEcC-C------CChHHHHHHhCCceEEEec
Q 039043 87 TEPAIESVLRHLKPDFVFFDF-T------HWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~-~------~~~~~~A~~~giP~v~~~~ 127 (449)
..+.+.+++++.+||+|+.-. + -.+..+|.++|.|++.=+.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~ 143 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVS 143 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEE
Confidence 345677788888899999876 4 4567889999999985433
No 400
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=26.20 E-value=7.7e+02 Score=25.80 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=69.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
++.|-|-+||.+ +...+......|+..|.++-+.+.+- ...|+.+. .|+-..+ -...++
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sa-------hr~~~~~~-----------~~~~~~~-~~~~~v 468 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSA-------HRTPERMF-----------SYARSAH-SRGLQV 468 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECC-------ccCHHHHH-----------HHHHHHH-HCCCCE
Confidence 344555566554 55666666666666666544443322 22333222 1111111 012344
Q ss_pred cceeccCCchhHHH---HHhhCCcEeccccccc---hhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCC
Q 039043 336 GCFVTHCGSGSLSE---AMVNECQLVLLPNVGD---QIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDH 409 (449)
Q Consensus 336 ~~~I~HgG~gs~~e---al~~GvP~l~~P~~~D---Q~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 409 (449)
+|+=.|.-.-+- |-..-+|+|.+|.... -.+--..+.++ --|+-+-.-.=+...+..-++..|-.+ .|
T Consensus 469 --~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~-p~g~pv~~v~i~~~~~aa~~a~~i~~~-~~-- 542 (577)
T PLN02948 469 --IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM-PRGVPVATVAIGNATNAGLLAVRMLGA-SD-- 542 (577)
T ss_pred --EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC-CCCCeEEEEecCChHHHHHHHHHHHhc-CC--
Confidence 887777643332 2334589999998532 22211222222 114211110000125666666666443 45
Q ss_pred chhHHHHHHHHHHHHHHHHhc
Q 039043 410 SEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 410 ~~~~~~~~~~a~~l~~~~~~~ 430 (449)
++++++.+..++.+++.
T Consensus 543 ----~~~~~~~~~~~~~~~~~ 559 (577)
T PLN02948 543 ----PDLLDKMEAYQEDMRDM 559 (577)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 67777777777777643
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=26.19 E-value=37 Score=27.96 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCEEEEEcCCccccccCCCC
Q 039043 14 LHIANKLAERGHRISFLLPAKAITKFEPSN 43 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g 43 (449)
.-+|..|.++||+|++++.....+.+.+.|
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g 40 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQG 40 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhee
Confidence 357899999999999999988444455555
No 402
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.10 E-value=73 Score=31.67 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.+.+.+++.+||+||..+. ...+|+++|||++.+
T Consensus 349 e~~~~~~~~~pdliig~s~--~~~~a~~lgip~~~~ 382 (415)
T cd01977 349 EFFEILEMLKPDIILTGPR--VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHHhcCCCEEEecCc--cchhhhhcCCCEEec
Confidence 3445667789999998861 125889999999875
No 403
>PRK09165 replicative DNA helicase; Provisional
Probab=26.01 E-value=1.4e+02 Score=30.64 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=28.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhC---------------CCEEEEEcCCcccccc
Q 039043 3 PWFAMGHLTPFLHIANKLAER---------------GHRISFLLPAKAITKF 39 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~r---------------Gh~Vt~~~~~~~~~~~ 39 (449)
..|+.|-..=++.+|...+.+ |..|.|++.+...+.+
T Consensus 224 arpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 224 GRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred eCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 357888888888888888653 7889999888665443
No 404
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=25.96 E-value=5.5e+02 Score=23.98 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=71.2
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
.+++.++..+..+++..+.. .-+|+.+....+.+-+=+ ||++ .=...|.+.+..|+..|+
T Consensus 151 ~~~~~l~~~~~Dlivlagym-------~il~~~~l~~~~~~iINi-----------HpSL--LP~f~G~~p~~~ai~~G~ 210 (280)
T TIGR00655 151 RQLELLKQYQVDLVVLAKYM-------QILSPDFVKRYPNKIINI-----------HHSF--LPAFIGANPYQRAYERGV 210 (280)
T ss_pred HHHHHHHHhCCCEEEEeCch-------hhCCHHHHhhccCCEEEe-----------cCCc--CCCCCCcCHHHHHHHcCC
Confidence 46666777777777777653 345666655443322222 5555 445678999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
....+-.+ .+..+...-+.+. -+.+... .|.++|.+++.++ +- .-|-+.++.+.
T Consensus 211 k~tG~TvH~V~e~lD~GpII~Q~---~v~I~~~-----dt~~~L~~ri~~~-E~------~~~~~ai~~~~ 266 (280)
T TIGR00655 211 KIIGATAHYVTEELDEGPIIEQD---VVRVDHT-----DNVEDLIRAGRDI-EK------VVLARAVKLHL 266 (280)
T ss_pred CeEEEEEEEEcCCCcCCCeEEEE---EEEcCCC-----CCHHHHHHHHHHH-HH------HHHHHHHHHHH
Confidence 99888864 2444444444433 3344444 5999999999885 32 44555555544
No 405
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=25.96 E-value=5.6e+02 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=28.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
-.++.|-..-+..|+..|.++|++|.++..+...
T Consensus 41 G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 41 GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578888888999999999999999988877543
No 406
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.78 E-value=2.1e+02 Score=29.78 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccch-----h-hhhhc----CCCcccee
Q 039043 271 KEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWVQ-----Q-QLILK----HPSVGCFV 339 (449)
Q Consensus 271 ~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~p-----q-~~lL~----~~~~~~~I 339 (449)
....+.++..|++.|.+.++-+..... ..+.... ..+++.+..... . .+-++ .+.+ ++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~---------~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v--~~ 77 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRS---------TPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVA--VI 77 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcc---------HHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEE--EE
Confidence 344456788888888888888766422 1121111 112232222111 1 11122 3444 88
Q ss_pred ccCCch------hHHHHHhhCCcEeccc
Q 039043 340 THCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 340 ~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+|.|-| .++||-..++|||++.
T Consensus 78 vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 78 VTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred ECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 888865 6679999999999985
No 407
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.77 E-value=76 Score=28.99 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcCCCE
Q 039043 23 RGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDF 102 (449)
Q Consensus 23 rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~ 102 (449)
......+..++.+.-+.+..| ++...+- +...+.+ . .......+.+.+++.+..+
T Consensus 148 ~~~~~~v~~h~~~~Y~~~~~g-----l~~~~~~-----~~~~~~~----p-----------s~~~l~~l~~~ik~~~v~~ 202 (256)
T PF01297_consen 148 LPGRPVVVYHDAFQYFAKRYG-----LKVIGVI-----EISPGEE----P-----------SPKDLAELIKLIKENKVKC 202 (256)
T ss_dssp SSGGEEEEEESTTHHHHHHTT------EEEEEE-----SSSSSSS----S------------HHHHHHHHHHHHHTT-SE
T ss_pred ccCCeEEEEChHHHHHHHhcC-----Cceeeee-----ccccccC----C-----------CHHHHHHHHHHhhhcCCcE
Confidence 334677778888888888888 7766553 1111101 0 0113356778889999999
Q ss_pred EEEcC-CC--ChHHHHHHhCCceEEEec
Q 039043 103 VFFDF-TH--WLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 103 vI~D~-~~--~~~~~A~~~giP~v~~~~ 127 (449)
|+++. .. .+..+|+..|+|++.+.+
T Consensus 203 i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 203 IFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp EEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred EEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 99987 33 347889999999976543
No 408
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=25.71 E-value=4.5e+02 Score=22.95 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=53.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc------cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI------TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPF 74 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~------~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~ 74 (449)
+++-++.|-..-.+.+|-..+.+|++|.++---... ..+++. ++ +.+...+ .+.. +. ..+
T Consensus 27 v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l---~~-v~~~~~g----~~~~--~~-~~~--- 92 (191)
T PRK05986 27 VHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG---GG-VEFHVMG----TGFT--WE-TQD--- 92 (191)
T ss_pred EECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC---CC-cEEEECC----CCCc--cc-CCC---
Confidence 356678888888888888888999998887422211 112221 22 7776665 2211 00 001
Q ss_pred CcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 75 PLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
................+.+.+-++|+||-|-
T Consensus 93 --~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDE 123 (191)
T PRK05986 93 --RERDIAAAREGWEEAKRMLADESYDLVVLDE 123 (191)
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCCCCEEEEeh
Confidence 1122233334455667777777999999997
No 409
>PRK06932 glycerate dehydrogenase; Provisional
Probab=25.62 E-value=3.1e+02 Score=26.08 Aligned_cols=102 Identities=17% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.|.+..|.+|++. ..++..++..|.+++.. .... . . .. ...+.+-.++|+.+|
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~-----~----~---------~~-~~~~~~l~ell~~sD 199 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKG-----A----S---------VC-REGYTPFEEVLKQAD 199 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCc-----c----c---------cc-ccccCCHHHHHHhCC
Confidence 3558899999887 45555566678877643 2110 0 0 00 113556789999999
Q ss_pred ccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
+ ++.|.-.+.- .....|+..+..+ +=|-.+-.-.+.+.++.+.|.++++
T Consensus 200 i--v~l~~Plt~~----------------T~~li~~~~l~~m-k~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 200 I--VTLHCPLTET----------------TQNLINAETLALM-KPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred E--EEEcCCCChH----------------HhcccCHHHHHhC-CCCeEEEECCCccccCHHHHHHHHH
Confidence 9 8877643321 2345555566555 5444333333345556666655554
No 410
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=25.60 E-value=69 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=19.9
Q ss_pred cCCCEEEEcC---CCChHHHHHHhCCceEEEe
Q 039043 98 LKPDFVFFDF---THWLPPLARKFGIKSVLYC 126 (449)
Q Consensus 98 ~~pD~vI~D~---~~~~~~~A~~~giP~v~~~ 126 (449)
.+.--||++. ..=+..+|+.+|||+++-.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 3566777776 3334689999999999643
No 411
>PRK06321 replicative DNA helicase; Provisional
Probab=25.52 E-value=2.2e+02 Score=28.97 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.3
Q ss_pred cCCCCCCHHHHHHHHHHHH-hCCCEEEEEcCCccccc
Q 039043 3 PWFAMGHLTPFLHIANKLA-ERGHRISFLLPAKAITK 38 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~ 38 (449)
..|+.|-..=.+.+|...+ +.|..|.|++.+-..+.
T Consensus 233 arPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 233 ARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred eCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 3578888888999999887 45899999988765433
No 412
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.47 E-value=2.2e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
+.|. .- +++|+.|+++|++|+++....
T Consensus 12 G~g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 12 GAGV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 4455 33 499999999999999986653
No 413
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.46 E-value=3.1e+02 Score=24.21 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=28.4
Q ss_pred ccccccCC--CCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEE
Q 039043 246 WETLLGSF--KSKSLIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVA 291 (449)
Q Consensus 246 l~~~l~~~--~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~ 291 (449)
+.+++... ....++||...|. ...+.......+++.. +..+...
T Consensus 20 l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 20 IDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred HHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 44444433 3456999987776 3456677788888888 7765433
No 414
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=25.41 E-value=49 Score=32.59 Aligned_cols=29 Identities=38% Similarity=0.704 Sum_probs=22.1
Q ss_pred CCCHHHHH---HHHHHHHhCCCEEEEEcCCcc
Q 039043 7 MGHLTPFL---HIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 7 ~GH~~p~l---~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.||+.|++ .+|+.++.+||+|.|++.-+.
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 49999777 468888899999999986543
No 415
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.40 E-value=2.7e+02 Score=27.24 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCEEEEEcCCc
Q 039043 15 HIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 15 ~la~~L~~rGh~Vt~~~~~~ 34 (449)
.+|..|+++||+|+++....
T Consensus 113 slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 113 LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred HHHHHHHHCCCeEEEeCCCc
Confidence 56788899999999987643
No 416
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.40 E-value=6.6e+02 Score=24.76 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHhhCCcEeccccccchh-------hHHHHHHhhhcceeEeeecC--------CCCcccHHHHHHHHHHHhcC
Q 039043 350 AMVNECQLVLLPNVGDQI-------INARLMGEELKVGVEVEKGD--------EDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 350 al~~GvP~l~~P~~~DQ~-------~na~~v~~~~G~G~~~~~~~--------~~~~~~~~~l~~~i~~ll~~ 407 (449)
++.+-+|++++|-+.+.+ .|..++.+. |+-+.-.... .....++++|.+.+.+.+..
T Consensus 108 ~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~-G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~ 179 (390)
T TIGR00521 108 ALAASAPIILAPAMNENMYNNPAVQENIKRLKDD-GYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFSP 179 (390)
T ss_pred HHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHC-CcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHhh
Confidence 344559999999855444 366667766 7654333310 13356788888888887753
No 417
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=25.37 E-value=4.1e+02 Score=22.35 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=71.2
Q ss_pred EEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceec
Q 039043 261 CAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVT 340 (449)
Q Consensus 261 vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~ 340 (449)
|-+||.+ +....+.+...|+..+.++-+.+-+ ....|+.+. .|+.+.+- .+.++ ||+
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S-------aHRtp~~~~-----------~~~~~a~~-~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVS-------AHRTPELML-----------EYAKEAEE-RGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC-------cccCHHHHH-----------HHHHHHHH-CCCeE--EEE
Confidence 3456654 6677888888888888875444433 233444332 11111000 12344 888
Q ss_pred cCCchhHHH---HHhhCCcEeccccccc---hhhHHHHHHhh-hc--ceeEeeecCCCCcccHHHHHHHHHHHhcCCCch
Q 039043 341 HCGSGSLSE---AMVNECQLVLLPNVGD---QIINARLMGEE-LK--VGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSE 411 (449)
Q Consensus 341 HgG~gs~~e---al~~GvP~l~~P~~~D---Q~~na~~v~~~-~G--~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 411 (449)
=+|...-+- |-..-+|+|.+|.... -.+--..+.++ -| ++...-... .+...++..|-. +.|
T Consensus 60 ~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~----~nAa~~AaqIl~-~~d---- 130 (156)
T TIGR01162 60 GAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNA----GNAALLAAQILG-IKD---- 130 (156)
T ss_pred eCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCCh----hHHHHHHHHHHc-CCC----
Confidence 777643332 2334689999997432 11111223331 03 232222222 567777777755 355
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 039043 412 VGKEIKENHAKWREFLRS 429 (449)
Q Consensus 412 ~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.++...+.
T Consensus 131 --~~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 131 --PELAEKLKEYRENQKE 146 (156)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 7788888777777663
No 418
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.24 E-value=70 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 9 HLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 9 H~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
|..-|...|.+|+++|++|+++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56678889999999999999987664
No 419
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.09 E-value=86 Score=31.51 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+.+++.+||++|..+ .+..+|+++|||++.+
T Consensus 377 ~e~~~~i~~~~pdllig~s--~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 377 LEFEEILEKLKPDIIFSGI--KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHhcCCCEEEEcC--cchhhhhhcCCCeEec
Confidence 3566777888999999876 2366889999999864
No 420
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.94 E-value=5.5e+02 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+.+ +++|.|-| .+++|...++|+|++.
T Consensus 64 ~~gv--~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSM--VIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEE--EEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 99998876 5569999999999995
No 421
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.84 E-value=49 Score=33.49 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..++.+++++.+||++|+... ...+|+++|||++.+
T Consensus 393 ~~el~~~i~~~~pDl~ig~~~--~~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 393 HYEFEEFVEKLKPDLVGSGIK--EKYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHHHHHHHhCCCEEEecCC--ccceeeecCCCcccc
Confidence 347788899999999999872 255788999999654
No 422
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=24.83 E-value=5.5e+02 Score=24.23 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=29.0
Q ss_pred cHHHHHHHHhhcCCCEEEEcC----CCChHHHHHHhCCceEEEec
Q 039043 87 TEPAIESVLRHLKPDFVFFDF----THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~----~~~~~~~A~~~giP~v~~~~ 127 (449)
......+++++.++++||... +..+..+++..+||.|...+
T Consensus 55 a~~~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s 99 (346)
T cd06330 55 AIREARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIATDP 99 (346)
T ss_pred HHHHHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcCC
Confidence 345667777777899998643 34446677888999987544
No 423
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=24.82 E-value=68 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCEEEEEcCCc
Q 039043 14 LHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~~~~ 34 (449)
.++|..|+++||+|++.+.+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999985
No 424
>PRK05114 hypothetical protein; Provisional
Probab=24.80 E-value=2.1e+02 Score=19.41 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 414 KEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++=.+.++++++.+..+-++-.|+..+.+.++
T Consensus 11 eeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiR 42 (59)
T PRK05114 11 EQQQKAVERIQELMAQGMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 34455566666666666556566666555555
No 425
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=24.79 E-value=94 Score=31.59 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVL 124 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~ 124 (449)
..++.+++++.+||++|... ....+|+++|||++.
T Consensus 382 ~~e~~~~i~~~~pDliig~s--~~~~~a~k~giP~~~ 416 (475)
T PRK14478 382 PRELYKMLKEAKADIMLSGG--RSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHHhhcCCCEEEecC--chhhhhhhcCCCEEE
Confidence 34567778888999999974 445788999999983
No 426
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=24.77 E-value=33 Score=27.67 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCC
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLPAKAITKFEPS 42 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 42 (449)
++..-...+.++|.++|++|+++.++...+.+...
T Consensus 11 ~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 11 IAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp GGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 44444889999999999999999999988777653
No 427
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=24.77 E-value=3.9e+02 Score=26.40 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=59.0
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEE-EeccchhhhhhcC
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFI-HGGWVQQQLILKH 332 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~~~pq~~lL~~ 332 (449)
.+||.|-+|+ ......-+..+.+.|++.|+.+++....+..- .-++...+...+- +.+.-.+ ++-.+
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG--------~aME~Li~~G~~~~VlDlTtt-El~d~ 250 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGG--------RAMERLIREGQFDGVLDLTTT-ELADE 250 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch--------HHHHHHHHcCCcEEEEECcHH-HHHHH
Confidence 4577888864 55666778889999999999988886554210 1122212222221 1122222 22211
Q ss_pred CCccceeccCCchhHHHHHhhCCcEeccccccc
Q 039043 333 PSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGD 365 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~D 365 (449)
= + +=|..+|-.=+-.|...|+|+|+.|-.-|
T Consensus 251 l-~-GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 251 L-F-GGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred H-h-CCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 1 1 13677788889999999999999996443
No 428
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.73 E-value=1e+02 Score=28.40 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=24.0
Q ss_pred CeEEEEEeCCcccCCHH-HHHHHHHHHHh--CCCCEEEEEcC
Q 039043 256 KSLIFCAFGSECVLNKE-QFQELVLGFEL--SGLPFLVALKP 294 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~ 294 (449)
|-+|+|||||......+ -+..+-..++. .+..+.|+..+
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 34889999998875544 67777777664 47788888765
No 429
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=24.72 E-value=5.8e+02 Score=26.69 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=36.0
Q ss_pred eeccCCchhHHH--HHhhCCcEecccccc-chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSE--AMVNECQLVLLPNVG-DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~e--al~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+.. -+.++-+.... .. ..++.++.++-+ |+ .-..- -+.++|.+++++.++
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~--~~~~~~d~~~la~a~-G~--~~~~v-----~~~~el~~al~~a~~ 531 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEV--HLGETPDFVKLAESY-GV--KADRV-----EKPDEIKEALKEAIK 531 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCcccc--cCCCCCCHHHHHHHC-CC--eEEEE-----CCHHHHHHHHHHHHh
Confidence 888999987643 33445432221 11 235677777755 65 22222 378999999998864
No 430
>PRK12361 hypothetical protein; Provisional
Probab=24.68 E-value=2.3e+02 Score=29.34 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCccceeccCCchhHHHHHh----hCCcEecccc
Q 039043 333 PSVGCFVTHCGSGSLSEAMV----NECQLVLLPN 362 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~eal~----~GvP~l~~P~ 362 (449)
.++ +|.-||=||++|++. .++|+-++|.
T Consensus 298 ~d~--Viv~GGDGTl~ev~~~l~~~~~~lgiiP~ 329 (547)
T PRK12361 298 ADI--VIACGGDGTVTEVASELVNTDITLGIIPL 329 (547)
T ss_pred CCE--EEEECCCcHHHHHHHHHhcCCCCEEEecC
Confidence 455 999999999998863 4788999996
No 431
>PLN02470 acetolactate synthase
Probab=24.60 E-value=4.9e+02 Score=27.22 Aligned_cols=102 Identities=5% Similarity=-0.122 Sum_probs=53.6
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcC-CCeEEEeccchhhhhhcCCCccceeccCCchhHHHH--Hhh
Q 039043 277 LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVK-GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEA--MVN 353 (449)
Q Consensus 277 ~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ea--l~~ 353 (449)
+-.+++..+.+++..+|.+. +..-...+.-..+ .-++++. ++..||+|.+.+. ..+
T Consensus 436 iGa~la~p~~~Vv~i~GDG~-----f~m~~~eL~Ta~~~~l~v~iv----------------V~NN~~yg~i~~~~~~~~ 494 (585)
T PLN02470 436 IGAAAANPDAIVVDIDGDGS-----FIMNIQELATIHVENLPVKIM----------------VLNNQHLGMVVQWEDRFY 494 (585)
T ss_pred HHHHHhCCCCcEEEEEccch-----hhccHHHHHHHHHhCCCeEEE----------------EEeCCcchHHHHHHHHHh
Confidence 44446666778888888762 2222222221111 1123332 8899999887543 223
Q ss_pred CCcEe--c--ccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 354 ECQLV--L--LPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 354 GvP~l--~--~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+-+.. . .|... ..++.++.++-+ |+- -..- -+.++|..++++.++.
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~--~~~v-----~~~~el~~al~~a~~~ 546 (585)
T PLN02470 495 KANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIP--AARV-----TRKSDLREAIQKMLDT 546 (585)
T ss_pred CCceeeeecCccccccCCCCCHHHHHHHC-CCe--EEEE-----CCHHHHHHHHHHHHhC
Confidence 32211 1 11111 125677777765 652 2222 3788999999888753
No 432
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.60 E-value=1.2e+02 Score=25.80 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=28.0
Q ss_pred cHHHHHHHHhhcCC----CEEEEcCCCChHHHHHHhCCceEEEecch
Q 039043 87 TEPAIESVLRHLKP----DFVFFDFTHWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 87 ~~~~~~~ll~~~~p----D~vI~D~~~~~~~~A~~~giP~v~~~~~~ 129 (449)
+...+.+.+++.+. -+||.|..+.=...++..|+-+|.+-+-.
T Consensus 95 ~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 95 FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 33455555666633 25677874455678889999999875543
No 433
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=24.58 E-value=1.8e+02 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEec
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVS 55 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p 55 (449)
-.+.+|+.|.+.|.++. .++.....+++.| +.+..+.
T Consensus 12 ~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~G-----I~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVELGVEIL--STGGTAKFLKEAG-----IPVTDVS 48 (187)
T ss_pred cHHHHHHHHHHCCCEEE--EccHHHHHHHHcC-----CeEEEhh
Confidence 46789999999999984 4555677788888 7777664
No 434
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.48 E-value=1.5e+02 Score=28.94 Aligned_cols=63 Identities=16% Similarity=0.362 Sum_probs=46.6
Q ss_pred cceeEeeecCCCCcccHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 378 KVGVEVEKGDEDGLFTRDGVCKAVKAVID-DDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 378 G~G~~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
.||.++..+ +++.++...+++|++ ..|-...++++.-++.|++.+++.+ .-..+..+.+.|++
T Consensus 75 NCg~~~r~E-----VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp-~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 75 NCGKRFRLE-----VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP-SLSLISALYKKLKE 138 (462)
T ss_pred hcchHHHHH-----HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHH
Confidence 677777776 899999999999998 4444555778888888888888554 55566666666654
No 435
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=24.47 E-value=3.1e+02 Score=22.34 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC------ccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccC
Q 039043 269 LNKEQFQELVLGFELSGLPFLVALKPPVGHD------TIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHC 342 (449)
Q Consensus 269 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~------~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~Hg 342 (449)
...++-+.|..+.+..+.++.+.-...+-+. +..+.-|..|..+-++..+ .-+--..++..|++ +|-.=
T Consensus 9 IHtdWRe~I~~ga~~~~L~v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~i---NaiRT~~li~~aDv--vVvrF 83 (144)
T TIGR03646 9 IHTDWREEIKEGAKSKNLPIVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASI---NNIRTRKLIEKADV--VIALF 83 (144)
T ss_pred ccchHHHHHHHHHHHcCCCeEEecCCCCCcchhhhhHHHhCCCCccccccccccch---hhHHHHHHHhhCCE--EEEEe
Confidence 3456677788888877888777755432211 1122223333221111110 12233467888998 88888
Q ss_pred C-----chhHHH---HHhhCCcEeccc
Q 039043 343 G-----SGSLSE---AMVNECQLVLLP 361 (449)
Q Consensus 343 G-----~gs~~e---al~~GvP~l~~P 361 (449)
| ||+... |++.|+|+|++-
T Consensus 84 GekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 84 GEKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred chHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 7 777664 478899998864
No 436
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.31 E-value=61 Score=30.62 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=30.4
Q ss_pred hhhcCCCccceeccCCchhHHHHHh----hCCcEeccccccc
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMV----NECQLVLLPNVGD 365 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~----~GvP~l~~P~~~D 365 (449)
+.|..-+++.+|.=||.+|+.-|.. +++|++.+|-..|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 3555667788999999999977753 7999999997655
No 437
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.23 E-value=1.4e+02 Score=28.24 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=38.2
Q ss_pred cCCCccceeccCCchhHHHHHhh----CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+++ +|+=||-||+++++.. ++|++.+... ++ | .+ .+ .+++++.++|+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~l-G---Fl--~~----~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------RL-G---FL--TD----IRPDELEFKLAEVLD 117 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------cc-c---cc--cc----CCHHHHHHHHHHHHc
Confidence 34677 9999999999998753 6787776641 11 2 11 22 677888888988887
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
.
T Consensus 118 g 118 (295)
T PRK01231 118 G 118 (295)
T ss_pred C
Confidence 5
No 438
>PRK07206 hypothetical protein; Provisional
Probab=24.13 E-value=1.9e+02 Score=28.49 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCce
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKS 122 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~ 122 (449)
+.+.+.+++.++|.||... ...+..+++.+|+|+
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred HHHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 4666678888999999654 334455677888884
No 439
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=1e+02 Score=29.62 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCC-CeEEEeccchhhhhhcCCCccceeccC
Q 039043 264 GSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKG-RGFIHGGWVQQQLILKHPSVGCFVTHC 342 (449)
Q Consensus 264 GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~~~~pq~~lL~~~~~~~~I~Hg 342 (449)
|-+.-++.---..+..+|+-+..++|++....-...+...++|++++.+.+. .+++.+.+-+ . ||.++
T Consensus 245 GMmVDLShvS~atm~~aL~vS~APVIFSHSsA~~vcns~rNVPDdVL~llk~NgGvVMVnfy~--------~---~isc~ 313 (419)
T KOG4127|consen 245 GMMVDLSHVSDATMRDALEVSRAPVIFSHSSAYSVCNSSRNVPDDVLQLLKENGGVVMVNFYP--------G---FISCS 313 (419)
T ss_pred hheeehhhcCHHHHHHHHHhhcCceEeecccHHHHhcCccCCcHHHHHHHhhcCCEEEEEeec--------c---cccCC
Confidence 3333333333456778889999999999877544333567899999877654 4566665533 2 77777
Q ss_pred CchhHHHHHhh
Q 039043 343 GSGSLSEAMVN 353 (449)
Q Consensus 343 G~gs~~eal~~ 353 (449)
..-++.+++.+
T Consensus 314 ~~A~v~~v~~H 324 (419)
T KOG4127|consen 314 DRATVSDVADH 324 (419)
T ss_pred CcccHHHHHHH
Confidence 77777777543
No 440
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.00 E-value=5.6e+02 Score=23.99 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
.+.+.++..+..+++..+.. .-+|..+....+.+-+=+ ||++ .=...|.+.+..|+.+|+
T Consensus 156 ~~~~~l~~~~~Dlivlagy~-------~il~~~~l~~~~~~iiNi-----------HpSL--LP~yrG~~~~~~ai~~G~ 215 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYM-------QILSPDFVARFPGRIINI-----------HHSF--LPAFKGAKPYHQAYERGV 215 (286)
T ss_pred HHHHHHHHhCCCEEEEecch-------hhcCHHHHhhccCCceec-----------Cccc--CCCCCCCCHHHHHHHCCC
Confidence 35555666677777776543 345555554322211111 5555 444578999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE 425 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~ 425 (449)
....+-++ .+..+...-+. ...+.+... -|.++|.+++.++-. .-|-+.++.+.+
T Consensus 216 ~~tG~TiH~v~~~~D~G~Ii~---Q~~v~i~~~-----dt~~~L~~ri~~~E~-------~~~~~ai~~~~~ 272 (286)
T PRK06027 216 KLIGATAHYVTADLDEGPIIE---QDVIRVDHR-----DTAEDLVRAGRDVEK-------QVLARAVRWHLE 272 (286)
T ss_pred CeEEEEEEEEcCCCcCCCcEE---EEEEEcCCC-----CCHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 99888864 24444444444 334445555 489999999987533 456655555543
No 441
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.98 E-value=1e+02 Score=24.12 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEe------ccchhhh---hhcCCCccceeccC
Q 039043 272 EQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHG------GWVQQQL---ILKHPSVGCFVTHC 342 (449)
Q Consensus 272 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~------~~~pq~~---lL~~~~~~~~I~Hg 342 (449)
+...+++.++++.|.+.+.+....+.. ...+ +..+.-+.+. +|+.... +.....+ ...|+
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~-------s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~p 80 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTV-------STHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHP 80 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTT-------GHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEES
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcc-------cccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--ccccc
Confidence 346779999999999988887654221 1111 1112233333 4665544 4444555 88999
Q ss_pred CchhHHHHH
Q 039043 343 GSGSLSEAM 351 (449)
Q Consensus 343 G~gs~~eal 351 (449)
|+|-++|..
T Consensus 81 Gyg~lse~~ 89 (110)
T PF00289_consen 81 GYGFLSENA 89 (110)
T ss_dssp TSSTTTTHH
T ss_pred ccchhHHHH
Confidence 998777654
No 442
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.95 E-value=2.9e+02 Score=26.29 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.|.+-.|.+|++. ..+++.++..|.+++..-... . +. . ..+++-.++|+.+|
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~-~--------~~---------~---~~~~~l~ell~~sD 199 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG-R--------PA---------R---PDRLPLDELLPQVD 199 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC-C--------cc---------c---ccccCHHHHHHhCC
Confidence 3559999999988 455666666788776542111 0 00 0 13456778999999
Q ss_pred ccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
+ ++.|.-.+.- .....|+..+..+ +=|-.+-.-.+.+.++.+.|.++++
T Consensus 200 i--v~l~lPlt~~----------------T~~li~~~~~~~m-k~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 200 A--LTLHCPLTEH----------------TRHLIGARELALM-KPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred E--EEECCCCChH----------------HhcCcCHHHHhcC-CCCeEEEECCCccccCHHHHHHHHH
Confidence 9 8877543321 2344555555554 4443333323344555555555544
No 443
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=23.94 E-value=14 Score=20.08 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=13.3
Q ss_pred CchhHHHHHhhCCcEec
Q 039043 343 GSGSLSEAMVNECQLVL 359 (449)
Q Consensus 343 G~gs~~eal~~GvP~l~ 359 (449)
|.|++...++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888765
No 444
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.87 E-value=6.1e+02 Score=26.16 Aligned_cols=101 Identities=7% Similarity=-0.060 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHH-hcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHH--Hhh
Q 039043 277 LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEE-RVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEA--MVN 353 (449)
Q Consensus 277 ~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ea--l~~ 353 (449)
+-.+++..+.+++..+|.+. +..-..++.- .-..-++++. ++..+|+|.+... ..+
T Consensus 411 iGa~la~p~~~vv~i~GDG~-----f~~~~~eL~ta~~~~l~v~iv----------------V~NN~~~~~~~~~~~~~~ 469 (548)
T PRK08978 411 IGAQVARPDDTVICVSGDGS-----FMMNVQELGTIKRKQLPVKIV----------------LLDNQRLGMVRQWQQLFF 469 (548)
T ss_pred HHHHHhCCCCcEEEEEccch-----hhccHHHHHHHHHhCCCeEEE----------------EEeCCccHHHHHHHHHHh
Confidence 44446666788999988762 2221222221 1011233332 8888999876532 223
Q ss_pred CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 354 ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 354 GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+.+.... ...+.++.++.++-+ |+- -..- -+.++|.+++++.++.
T Consensus 470 ~~~~~~~-~~~~~~d~~~la~a~-G~~--~~~v-----~~~~el~~al~~a~~~ 514 (548)
T PRK08978 470 DERYSET-DLSDNPDFVMLASAF-GIP--GQTI-----TRKDQVEAALDTLLNS 514 (548)
T ss_pred CCcceec-CCCCCCCHHHHHHHC-CCe--EEEE-----CCHHHHHHHHHHHHhC
Confidence 3221111 111347788888755 642 2322 3788999999888753
No 445
>PRK03094 hypothetical protein; Provisional
Probab=23.72 E-value=74 Score=23.34 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCC
Q 039043 13 FLHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~ 33 (449)
+-.+.++|+++|++|.=+-.+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999866543
No 446
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=23.72 E-value=1e+02 Score=28.70 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=16.4
Q ss_pred CChHHHHHHhCCceEEEecchH
Q 039043 109 HWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 109 ~~~~~~A~~~giP~v~~~~~~~ 130 (449)
+....+|+.+|+|+++...++-
T Consensus 201 ~~lA~~Ak~~~vPfyV~a~~~k 222 (275)
T PRK08335 201 YLLALACHDNGVPFYVAAETFK 222 (275)
T ss_pred HHHHHHHHHcCCCEEEECccce
Confidence 3346889999999998755443
No 447
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=23.66 E-value=5.4e+02 Score=26.96 Aligned_cols=53 Identities=8% Similarity=0.074 Sum_probs=28.7
Q ss_pred ccCCchhHHHHHhhC--CcE--eccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 340 THCGSGSLSEAMVNE--CQL--VLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 340 ~HgG~gs~~eal~~G--vP~--l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
.+||+|+........ +|+ +.+|-.+-+......+.+. -. +|++.|.++|++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~---------~G----l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKR---------NH----LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHH---------HC----cCHHHHHHHHHHHh
Confidence 479998866555543 333 3444322222232222222 22 78888888888775
No 448
>COG4859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.60 E-value=85 Score=23.41 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.7
Q ss_pred CCeEEEEEeCCcccCCHHHH
Q 039043 255 SKSLIFCAFGSECVLNKEQF 274 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~ 274 (449)
++-..||++||..+.++..+
T Consensus 59 p~n~A~VsL~~~vN~~p~vL 78 (105)
T COG4859 59 PDNFAIVSLADIVNTNPETL 78 (105)
T ss_pred CCcEEEEEHHHhhcCChhhH
Confidence 45599999999998776554
No 449
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=23.43 E-value=2.5e+02 Score=23.59 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc-cccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 13 FLHIANKLAERGHRISFLLPAK-AITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~-~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
.-.|++.|-+||++|+.+.+-. ....++.. .|. +-++.+-..+ .+. -.+
T Consensus 22 ~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~Pa-yAvvDlkL~~----------gsG-----------------L~~ 71 (182)
T COG4567 22 LRTLARAMERRGFAVVTAESVEEALAAARTA--PPA-YAVVDLKLGD----------GSG-----------------LAV 71 (182)
T ss_pred HHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCc-eEEEEeeecC----------CCc-----------------hHH
Confidence 4578999999999998886543 12222221 222 3333332111 000 134
Q ss_pred HHHHhhcCCC---EEEEcC-CCChHHHHHHhCCceEEEecch
Q 039043 92 ESVLRHLKPD---FVFFDF-THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 92 ~~ll~~~~pD---~vI~D~-~~~~~~~A~~~giP~v~~~~~~ 129 (449)
.+.+++.++| +|++.+ +.+...-|-++|.--+..-+..
T Consensus 72 i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAd 113 (182)
T COG4567 72 IEALRERRADMRIVVLTGYASIATAVEAVKLGACDYLAKPAD 113 (182)
T ss_pred HHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCC
Confidence 4556666777 456777 8888888889987766544443
No 450
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=23.18 E-value=73 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFE 40 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (449)
-...+++.|+++|++|.++.++.....+.
T Consensus 14 ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 14 YGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred HHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 35788999999999999999999888764
No 451
>PRK08236 hypothetical protein; Provisional
Probab=23.17 E-value=85 Score=27.94 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecc
Q 039043 92 ESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~ 128 (449)
.+.+.+.-|+.++.|+ ..+...+|+..|||++.+-..
T Consensus 146 ~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~I 183 (212)
T PRK08236 146 AAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAI 183 (212)
T ss_pred HHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEe
Confidence 3334444479999999 888899999999999987543
No 452
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.06 E-value=64 Score=30.57 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=24.4
Q ss_pred cCCCccceeccCCchhHHHHHhh----CCcEecccc
Q 039043 331 KHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPN 362 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~ 362 (449)
..+++ +|+-||-||+++++.. ++|++.+..
T Consensus 56 ~~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 34667 9999999999999864 788887765
No 453
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=22.97 E-value=3.9e+02 Score=22.50 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=60.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhH
Q 039043 268 VLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSL 347 (449)
Q Consensus 268 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~ 347 (449)
...++.+.+++...+..+..+++..... ...||. +..-.-.-.++-. |- +. -.=+|..++
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~AG~------aa~Lpg-vva~~t~~PVIgv---P~-------~~---~~l~G~daL 95 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGAGG------AAHLPG-MVAALTPLPVIGV---PV-------PS---KALSGLDSL 95 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCc------cchhHH-HHHhccCCCEEEe---cC-------Cc---cCCCCHHHH
Confidence 3677888888888877788877777663 445553 2211111111111 10 01 124688888
Q ss_pred HHHHh--hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 348 SEAMV--NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 348 ~eal~--~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
...+. .|+|+-.+ ..|.-.||....-. .+. +...+|.+++++.-
T Consensus 96 lS~vqmP~gvpvatv--~I~~~~nAa~~Aaq-----Il~-------~~d~~l~~kl~~~r 141 (156)
T TIGR01162 96 LSIVQMPSGVPVATV--AIGNAGNAALLAAQ-----ILG-------IKDPELAEKLKEYR 141 (156)
T ss_pred HHHhcCCCCCeeEEE--EcCChhHHHHHHHH-----HHc-------CCCHHHHHHHHHHH
Confidence 88888 79995444 44577788876643 122 34567777776653
No 454
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.88 E-value=69 Score=30.03 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=23.6
Q ss_pred hhcCCCccceeccCCchhHHHHHhh----CCcEeccc
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLP 361 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P 361 (449)
+...+++ +|+-||-||+..++.. ++|++.+-
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN 95 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIH 95 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEe
Confidence 3345677 9999999999988663 67877654
No 455
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.88 E-value=7e+02 Score=26.13 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=33.5
Q ss_pred cCCchh-HHHHHh-hC--CcEec--ccc-ccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 341 HCGSGS-LSEAMV-NE--CQLVL--LPN-VGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 341 HgG~gs-~~eal~-~G--vP~l~--~P~-~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+||.|| ++|.+. .| +|++. +|- +.||-.-.....++ . ++++.|.+.|.+.+..
T Consensus 565 ~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~---------g-----Ld~~~i~~~i~~~l~~ 624 (627)
T COG1154 565 DGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL---------G-----LDAEGIARRILEWLKA 624 (627)
T ss_pred cccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc---------C-----CCHHHHHHHHHHHHhh
Confidence 899986 456654 34 56544 443 45665555554444 2 7888888888887753
No 456
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.87 E-value=4.2e+02 Score=24.64 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=55.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHH---H-HhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchh--hhh
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLG---F-ELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQ--QLI 329 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~a---l-~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq--~~l 329 (449)
++.|.|+...-...+.+....+.++ + ++.+.++++.--.... ....-..+...+.....++...-++ ..+
T Consensus 172 ~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~----D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~ 247 (298)
T TIGR03609 172 EPVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQ----DLPLARALRDQLLGPAEVLSPLDPEELLGL 247 (298)
T ss_pred CCeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcch----hHHHHHHHHHhcCCCcEEEecCCHHHHHHH
Confidence 4577777654322343333444433 3 3347777665322111 0011112222222222222222233 357
Q ss_pred hcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcc
Q 039043 330 LKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKV 379 (449)
Q Consensus 330 L~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 379 (449)
++++++ +|+-==++ +.-|+.+|||.+++++. +-....+++. |+
T Consensus 248 i~~~~~--vI~~RlH~-~I~A~~~gvP~i~i~y~---~K~~~~~~~~-g~ 290 (298)
T TIGR03609 248 FASARL--VIGMRLHA-LILAAAAGVPFVALSYD---PKVRAFAADA-GV 290 (298)
T ss_pred HhhCCE--EEEechHH-HHHHHHcCCCEEEeecc---HHHHHHHHHh-CC
Confidence 888888 88744333 44688999999988542 3444445544 54
No 457
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=22.86 E-value=1.8e+02 Score=25.87 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCCEEEEcC
Q 039043 88 EPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~ 107 (449)
.+.+.+++++.+||+||+=-
T Consensus 49 ~~~l~~~l~~~~Pd~vlhlG 68 (208)
T PRK13194 49 REELEKVLDEIKPDITINLG 68 (208)
T ss_pred HHHHHHHHHHhCCCEEEEee
Confidence 45577777888999998743
No 458
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=22.82 E-value=1e+02 Score=31.15 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCEEEEcCCCChHHHHHHhCCceE
Q 039043 91 IESVLRHLKPDFVFFDFTHWLPPLARKFGIKSV 123 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v 123 (449)
+.+.+++.+||++|..+ ....+|+++|||++
T Consensus 389 ~~~~~~~~~pDliig~s--~~~~~A~klgiP~v 419 (461)
T TIGR01860 389 FFEVLDLIKPDVIFTGP--RVGELVKKLHIPYV 419 (461)
T ss_pred HHHHHHhcCCCEEEeCC--cchhhHhhcCCCEE
Confidence 44566888999999886 23558999999998
No 459
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=22.77 E-value=1.6e+02 Score=25.91 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHHHHHhhc--CCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHL--KPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~--~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
...+.+.+++. ++|+||+= . .+.+..+|+.+++|++..
T Consensus 51 ~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~ 93 (202)
T PRK00455 51 GRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFV 93 (202)
T ss_pred HHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEE
Confidence 34444445544 78999863 3 677889999999999865
No 460
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.74 E-value=5.2e+02 Score=26.92 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=21.9
Q ss_pred ccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 335 VGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 335 ~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+++++|.|-| .+++|...++|||++-
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 34489998876 4679999999999985
No 461
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.50 E-value=59 Score=30.31 Aligned_cols=29 Identities=7% Similarity=0.155 Sum_probs=23.0
Q ss_pred CCCccceeccCCchhHHHHHh---hCCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAMV---NECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~---~GvP~l~~P~ 362 (449)
.+++ +|.-||-||+++++. .++|++.++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 4566 999999999999984 3568887775
No 462
>PLN02775 Probable dihydrodipicolinate reductase
Probab=22.45 E-value=1.3e+02 Score=28.13 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=25.2
Q ss_pred cCCCEEEEcC-CCCh----HHHHHHhCCceEEEecchH
Q 039043 98 LKPDFVFFDF-THWL----PPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 98 ~~pD~vI~D~-~~~~----~~~A~~~giP~v~~~~~~~ 130 (449)
..||+|+.|+ .+.+ ...|...|+|.|+-.+...
T Consensus 78 ~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~ 115 (286)
T PLN02775 78 EYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGD 115 (286)
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3799999998 5444 4667889999998777653
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=22.35 E-value=4.2e+02 Score=24.59 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=54.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
.-+|+.|-......|++.|.+.|.+|.++..+... +.+. . +. +. .. -+
T Consensus 7 ~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~------------------~----y~---~~--~~---Ek 54 (270)
T PF08433_consen 7 CGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN------------------D----YA---DS--KK---EK 54 (270)
T ss_dssp E--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS------------------S----S-----G--GG---HH
T ss_pred EcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh------------------h----hh---ch--hh---hH
Confidence 45799999999999999999988888888754433 1110 0 00 00 01 11
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC-C-CCh-----HHHHHHhCCceEEEecchHHHHH
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF-T-HWL-----PPLARKFGIKSVLYCIISPATIG 134 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~-~-~~~-----~~~A~~~giP~v~~~~~~~~~~~ 134 (449)
.....+...+...+.+. ++||+|. . .=+ ..+|+..+.++..++...+...+
T Consensus 55 ~~R~~l~s~v~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 55 EARGSLKSAVERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp HHHHHHHHHHHHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred HHHHHHHHHHHHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 11122344455555443 8999998 4 333 57999999999887666554433
No 464
>PRK07773 replicative DNA helicase; Validated
Probab=22.29 E-value=1.3e+02 Score=33.39 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=28.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhC-CCEEEEEcCCccccc
Q 039043 3 PWFAMGHLTPFLHIANKLAER-GHRISFLLPAKAITK 38 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~ 38 (449)
..|+.|-..=.+.+|...+.+ |..|.|++.+...+.
T Consensus 224 grPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 224 ARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred eCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 357889999999999988754 788999988766544
No 465
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=22.28 E-value=2e+02 Score=25.36 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCEEEEc----C-CCChHHHHHHh-----CCceEEEecc
Q 039043 90 AIESVLRHLKPDFVFFD----F-THWLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D----~-~~~~~~~A~~~-----giP~v~~~~~ 128 (449)
.+.+.+++.+||+||.| . ...+..+++.+ ++|+++++..
T Consensus 38 ~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 38 DLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 34455667789999999 5 44555555533 4667776543
No 466
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=22.28 E-value=1.1e+02 Score=27.58 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccccc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKAITKF 39 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 39 (449)
||.|-..-.+.||.+|+++|-.|+++=.+..+...
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 68899999999999999999999999888776553
No 467
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.27 E-value=7.8e+02 Score=25.70 Aligned_cols=59 Identities=8% Similarity=-0.144 Sum_probs=34.5
Q ss_pred eeccCCchhHHHHHh--hCCcEeccccccc-hhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEAMV--NECQLVLLPNVGD-QIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~eal~--~GvP~l~~P~~~D-Q~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+..... ++.+... ...+ .++.++.++-+ |+- -..- -+.++|.+++++.+.
T Consensus 488 V~NN~~~~~i~~~q~~~~~~~~~~--~~~~~~~d~~~iA~a~-G~~--~~~v-----~~~~eL~~al~~a~~ 549 (587)
T PRK06965 488 SLNNRYLGMVRQWQEIEYSKRYSH--SYMDALPDFVKLAEAY-GHV--GMRI-----EKTSDVEPALREALR 549 (587)
T ss_pred EEECCcchHHHHHHHHhcCCCccc--cCCCCCCCHHHHHHHC-CCE--EEEE-----CCHHHHHHHHHHHHh
Confidence 888888887765432 2222111 0111 35677777755 653 2222 278889999988875
No 468
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=22.27 E-value=2.4e+02 Score=23.67 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCccc
Q 039043 13 FLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
+..+.+.|+++|+++.++|.....
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~ 113 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRD 113 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchH
Confidence 566778899999999999876543
No 469
>PRK07586 hypothetical protein; Validated
Probab=21.98 E-value=6.4e+02 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCccceeccCCchhHH------HHHhhCCcEecccc
Q 039043 333 PSVGCFVTHCGSGSLS------EAMVNECQLVLLPN 362 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~------eal~~GvP~l~~P~ 362 (449)
+.+ ++.|.|-|.++ +|...++|||++.-
T Consensus 65 ~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G 98 (514)
T PRK07586 65 PAA--TLLHLGPGLANGLANLHNARRARTPIVNIVG 98 (514)
T ss_pred CEE--EEecccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 455 88888876554 89999999999863
No 470
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=21.94 E-value=4.6e+02 Score=25.74 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=38.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
|.+-.|.+|.+. ..+...++..|.+++..=... ... . .+ ..+.+-.++++.+++
T Consensus 117 ktvGIIG~G~IG-------~~va~~l~a~G~~V~~~Dp~~-------~~~-~--------~~---~~~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVG-------GRLVRVLRGLGWKVLVCDPPR-------QEA-E--------GD---GDFVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCcc-------ccc-c--------cC---ccccCHHHHHhhCCE
Confidence 558889999887 456666667888876552110 000 0 01 134566788899998
Q ss_pred cceeccCCc
Q 039043 336 GCFVTHCGS 344 (449)
Q Consensus 336 ~~~I~HgG~ 344 (449)
++.|.-.
T Consensus 171 --V~lh~Pl 177 (381)
T PRK00257 171 --ISLHTPL 177 (381)
T ss_pred --EEEeCcC
Confidence 8877655
No 471
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.85 E-value=1.3e+02 Score=30.34 Aligned_cols=35 Identities=20% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+.+++.+||++|... ....+|+++|||++.+
T Consensus 385 ~e~~~~i~~~~pDl~ig~~--~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAGG--KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcCCCEEEEcc--chHHHHHhcCCCEEEc
Confidence 5678888888999999864 2356788999999865
No 472
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.82 E-value=8.3e+02 Score=25.40 Aligned_cols=60 Identities=7% Similarity=-0.105 Sum_probs=35.9
Q ss_pred eeccCCchhHHHH--HhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEA--MVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+... ..++-+.... .....++.++.++-+ |+- -..- -+.++|..++++.++
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~~A~a~-G~~--~~~v-----~~~~eL~~al~~a~~ 533 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHS-YMDSVPDFAKIAEAY-GHV--GIRI-----SDPDELESGLEKALA 533 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCccccc-CCCCCCCHHHHHHHC-CCe--EEEE-----CCHHHHHHHHHHHHh
Confidence 8889999987633 2233332111 111236778888865 652 2222 378889999988875
No 473
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=21.65 E-value=2.2e+02 Score=19.21 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQK 443 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 443 (449)
+++.++.++|...+..+... ..-....+.+..+-+.+-..+.+.-..++|++.
T Consensus 13 ~~G~i~~~el~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRD---MSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSH---STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 36789999999999998753 001445555555555554445555566666553
No 474
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.63 E-value=6.4e+02 Score=23.18 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCCEEEEcC-CCC------hHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDF-THW------LPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~-~~~------~~~~A~~~giP~v~~ 125 (449)
.+.+.+++++.+.|+||=-. -++ +..+|+..|||++.+
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 45788888999999888333 222 356788888888764
No 475
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=21.62 E-value=6.8e+02 Score=24.13 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.|.+..+.+|++. ..++.-|...+ +.|...... ..+.....+ + -..+++..++++.++
T Consensus 162 gK~vgilG~G~IG-------~~ia~rL~~Fg-~~i~y~~r~--------~~~~~~~~~-----~-~~~~~d~~~~~~~sD 219 (336)
T KOG0069|consen 162 GKTVGILGLGRIG-------KAIAKRLKPFG-CVILYHSRT--------QLPPEEAYE-----Y-YAEFVDIEELLANSD 219 (336)
T ss_pred CCEEEEecCcHHH-------HHHHHhhhhcc-ceeeeeccc--------CCchhhHHH-----h-cccccCHHHHHhhCC
Confidence 3559999999998 55666666666 444443332 121211111 0 012567788999999
Q ss_pred ccceeccCCchhHHHHHhhCCcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNECQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
+ +|-| +|... ..-.|...++.+ +-|..+-.-.+...++.+++.++++
T Consensus 220 ~--ivv~------------------~pLt~~T~~liNk~~~~~m-k~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 220 V--IVVN------------------CPLTKETRHLINKKFIEKM-KDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred E--EEEe------------------cCCCHHHHHHhhHHHHHhc-CCCeEEEeccccccccHHHHHHHHh
Confidence 8 6654 45543 346788888877 8877776555566777777777765
No 476
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=21.54 E-value=69 Score=28.99 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCCCH-HHHHHHHHHHHhC--CCEEEEEcCCccccccCCCC
Q 039043 5 FAMGHL-TPFLHIANKLAER--GHRISFLLPAKAITKFEPSN 43 (449)
Q Consensus 5 ~~~GH~-~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g 43 (449)
-|.|+. .-.+.|++.|+++ ||+|.++.++.....+...+
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~ 48 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYG 48 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhh
Confidence 344455 6889999999999 99999999999888877643
No 477
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.43 E-value=1.7e+02 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCCEEEEcC
Q 039043 88 EPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~ 107 (449)
.+.+.+++++.+||+||+=-
T Consensus 50 ~~~l~~~~~~~~Pd~vi~~G 69 (211)
T PRK13196 50 MAALSRLLDELQPSAVLLTG 69 (211)
T ss_pred HHHHHHHHHHhCCCEEEEec
Confidence 35678888889999999854
No 478
>PLN03139 formate dehydrogenase; Provisional
Probab=21.40 E-value=4.2e+02 Score=26.11 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
.|.+-.|.+|.+. ..+++.+...|.+++.. ... ..+...... .++. ...+-.++++.+|
T Consensus 199 gktVGIVG~G~IG-------~~vA~~L~afG~~V~~~-d~~--------~~~~~~~~~---~g~~--~~~~l~ell~~sD 257 (386)
T PLN03139 199 GKTVGTVGAGRIG-------RLLLQRLKPFNCNLLYH-DRL--------KMDPELEKE---TGAK--FEEDLDAMLPKCD 257 (386)
T ss_pred CCEEEEEeecHHH-------HHHHHHHHHCCCEEEEE-CCC--------CcchhhHhh---cCce--ecCCHHHHHhhCC
Confidence 3559999999987 56666666788887543 221 111111110 1221 1225568999999
Q ss_pred ccceeccCCchh
Q 039043 335 VGCFVTHCGSGS 346 (449)
Q Consensus 335 ~~~~I~HgG~gs 346 (449)
+ ++.|.-.+.
T Consensus 258 v--V~l~lPlt~ 267 (386)
T PLN03139 258 V--VVINTPLTE 267 (386)
T ss_pred E--EEEeCCCCH
Confidence 9 888876443
No 479
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=21.29 E-value=1.6e+02 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=29.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKP 294 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 294 (449)
..+|+|++||-.....+.++.++..+. .+.+++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 349999999999888899999988884 35677766543
No 480
>PRK08617 acetolactate synthase; Reviewed
Probab=21.13 E-value=4.6e+02 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.2
Q ss_pred cceeccCCch------hHHHHHhhCCcEeccc
Q 039043 336 GCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 336 ~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
+++++|.|-| .+.+|-..++|||++.
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 3388888865 6679999999999985
No 481
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.13 E-value=89 Score=29.06 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=24.9
Q ss_pred hhhhcCCCccceeccCCchhHHHHHhh----CCcEeccc
Q 039043 327 QLILKHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLP 361 (449)
Q Consensus 327 ~~lL~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P 361 (449)
.++...+++ +|+=||-||+..++.. ++|++.+-
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 344456777 9999999999987653 67887764
No 482
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=20.97 E-value=5.7e+02 Score=22.40 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 350 AMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 350 al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
..-...|+|.+--++|=+.--+.+. . |.---+.+. ++.+.|.++|++.+..
T Consensus 72 ~~~~~~PVIfiTGhgDIpmaV~AmK-~-GAvDFLeKP-----~~~q~Lldav~~Al~~ 122 (202)
T COG4566 72 ERGIRLPVIFLTGHGDIPMAVQAMK-A-GAVDFLEKP-----FSEQDLLDAVERALAR 122 (202)
T ss_pred hcCCCCCEEEEeCCCChHHHHHHHH-c-chhhHHhCC-----CchHHHHHHHHHHHHH
Confidence 3445678888888888776544443 5 766667766 8999999999999976
No 483
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=20.95 E-value=2.4e+02 Score=29.12 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=23.0
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+.+ +++|.|-| .+.||..-++|||++.
T Consensus 63 ~~gv--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 63 KVGV--CIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 3555 99999866 5679999999999985
No 484
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=20.85 E-value=2.5e+02 Score=29.03 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCCccceeccCCch------hHHHHHhhCCcEeccc
Q 039043 332 HPSVGCFVTHCGSG------SLSEAMVNECQLVLLP 361 (449)
Q Consensus 332 ~~~~~~~I~HgG~g------s~~eal~~GvP~l~~P 361 (449)
.+.+ +++|.|-| .+.+|...++|||++-
T Consensus 64 kpgv--~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 64 KPSA--CMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CCeE--EEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 3555 99999966 5669999999999984
No 485
>PRK07574 formate dehydrogenase; Provisional
Probab=20.84 E-value=3.4e+02 Score=26.68 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=42.7
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
+.+-.|.+|++. ..++..++..+.+++..-... .+..+... .++ ..+.+-.++++.+++
T Consensus 193 ktVGIvG~G~IG-------~~vA~~l~~fG~~V~~~dr~~---------~~~~~~~~---~g~--~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIG-------LAVLRRLKPFDVKLHYTDRHR---------LPEEVEQE---LGL--TYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEECCCC---------CchhhHhh---cCc--eecCCHHHHhhcCCE
Confidence 458999999887 556666767787765442111 11111111 122 123456789999999
Q ss_pred cceeccCCchhHHHH
Q 039043 336 GCFVTHCGSGSLSEA 350 (449)
Q Consensus 336 ~~~I~HgG~gs~~ea 350 (449)
++.|.-.+.-.+.
T Consensus 252 --V~l~lPlt~~T~~ 264 (385)
T PRK07574 252 --VTIHCPLHPETEH 264 (385)
T ss_pred --EEEcCCCCHHHHH
Confidence 9999876554333
No 486
>PLN02880 tyrosine decarboxylase
Probab=20.79 E-value=1.7e+02 Score=29.84 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=41.0
Q ss_pred ccceeccCCchhHHHHHhhCC------------cEeccccccch-hhHHHHHHhhhccee----EeeecC-CCCcccHHH
Q 039043 335 VGCFVTHCGSGSLSEAMVNEC------------QLVLLPNVGDQ-IINARLMGEELKVGV----EVEKGD-EDGLFTRDG 396 (449)
Q Consensus 335 ~~~~I~HgG~gs~~eal~~Gv------------P~l~~P~~~DQ-~~na~~v~~~~G~G~----~~~~~~-~~~~~~~~~ 396 (449)
.+++++.||..+...||.... +-+++- ..|| +.--.++.+.+|+|. .++..+ +...++.+.
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~-~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~ 225 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY-ASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPEL 225 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE-EcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHH
Confidence 356899999888877765432 222221 2333 443444444559982 343321 133589999
Q ss_pred HHHHHHHHh
Q 039043 397 VCKAVKAVI 405 (449)
Q Consensus 397 l~~~i~~ll 405 (449)
|.++|++..
T Consensus 226 L~~~i~~~~ 234 (490)
T PLN02880 226 LSEAISTDL 234 (490)
T ss_pred HHHHHHHHH
Confidence 999998754
No 487
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=20.78 E-value=3.6e+02 Score=25.77 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=39.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHH-hCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFE-LSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~-~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
|.+-.|.+|++. ..+.+.++ ..|.+++..-... +...... .++ .+.+-.++|+.+|
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~----------~~~~~~~---~~~---~~~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH----------HKEAEER---FNA---RYCDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC----------chhhHHh---cCc---EecCHHHHHHhCC
Confidence 558899999988 44555454 5677776432111 0110000 122 3457788999999
Q ss_pred ccceeccCCchh
Q 039043 335 VGCFVTHCGSGS 346 (449)
Q Consensus 335 ~~~~I~HgG~gs 346 (449)
+ ++.|.-.+.
T Consensus 203 v--v~lh~plt~ 212 (323)
T PRK15409 203 F--VCIILPLTD 212 (323)
T ss_pred E--EEEeCCCCh
Confidence 9 888876543
No 488
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=20.73 E-value=6.9e+02 Score=26.04 Aligned_cols=59 Identities=12% Similarity=-0.044 Sum_probs=34.5
Q ss_pred eeccCCchhHHHH--HhhCCcEeccccccch-hhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEA--MVNECQLVLLPNVGDQ-IINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~DQ-~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..+|+|.+... ..++-..... ..+. ++.++.++-+ |+ .-..- -+.++|..++++.++
T Consensus 481 V~NN~~yg~i~~~~~~~~~~~~~~~--~~~~~~d~~~lA~a~-G~--~g~~v-----~~~~el~~al~~a~~ 542 (579)
T TIGR03457 481 VFRNRQWGAEKKNQVDFYNNRFVGT--ELESELSFAGIADAM-GA--KGVVV-----DKPEDVGPALKKAIA 542 (579)
T ss_pred EEECcchHHHHHHHHHhhCCcceec--cCCCCCCHHHHHHHC-CC--eEEEE-----CCHHHHHHHHHHHHh
Confidence 8889999976533 2233221111 1222 4777777755 64 22232 378899999988875
No 489
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=20.71 E-value=7.3e+02 Score=23.52 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=40.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeE-EEeccchhhhhhcCCC
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGF-IHGGWVQQQLILKHPS 334 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~~~~pq~~lL~~~~ 334 (449)
+.+..|.+|++. ..+...++..|.+++..-.... ..+ ++ .+.....-.++++.++
T Consensus 137 ~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~~-------~~~----------~~~~~~~~~~l~e~l~~aD 192 (312)
T PRK15469 137 FTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSRK-------SWP----------GVQSFAGREELSAFLSQTR 192 (312)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCCC-------CCC----------CceeecccccHHHHHhcCC
Confidence 558899999988 5566667777887654422110 000 11 1112234467899999
Q ss_pred ccceeccCCchhHH
Q 039043 335 VGCFVTHCGSGSLS 348 (449)
Q Consensus 335 ~~~~I~HgG~gs~~ 348 (449)
+ ++.|.-.+.-.
T Consensus 193 v--vv~~lPlt~~T 204 (312)
T PRK15469 193 V--LINLLPNTPET 204 (312)
T ss_pred E--EEECCCCCHHH
Confidence 9 88887655433
No 490
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=20.67 E-value=7.7e+02 Score=25.79 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=34.7
Q ss_pred eeccCCchhHHHHHh--hCCcEecccc------cc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEAMV--NECQLVLLPN------VG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~eal~--~GvP~l~~P~------~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+..... ++.......+ .. -.++.++.++-+ |+ .-..- -+.++|..++++.++
T Consensus 469 V~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~--~~~~V-----~~~~eL~~al~~a~~ 539 (588)
T TIGR01504 469 LVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GC--KAIRV-----FKPEEIAPAFEQAKA 539 (588)
T ss_pred EEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CC--EEEEE-----CCHHHHHHHHHHHHh
Confidence 888899987765432 2221101000 01 136677777755 54 33322 378899999999874
No 491
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=20.60 E-value=1.3e+02 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+.+++.+||++|..+ ....+|+++|+|++..
T Consensus 346 ~e~~~~i~~~~pDl~ig~s--~~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGG--KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECC--cchhhHHhcCCCEEEc
Confidence 4577888888999999985 2357888999999843
No 492
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=20.58 E-value=1.6e+02 Score=25.58 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCEEEE-cC--CCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFF-DF--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~-D~--~~~~~~~A~~~giP~v~~ 125 (449)
..+.+.+ +.++|+|++ +. ...|..+|..+++|++..
T Consensus 42 ~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~ 80 (187)
T PRK12560 42 KEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMA 80 (187)
T ss_pred HHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEe
Confidence 3344445 568999997 44 677888999999998764
No 493
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=20.48 E-value=1.2e+02 Score=29.31 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=55.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCC-----hhHHHhcCCCeEEEeccchhh---hhhcCCCccce
Q 039043 267 CVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALP-----EGFEERVKGRGFIHGGWVQQQ---LILKHPSVGCF 338 (449)
Q Consensus 267 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp-----~~~~~~~~~~~~~~~~~~pq~---~lL~~~~~~~~ 338 (449)
+...+.-+..++++++..+.++...+..+.........++ .|-......-.+.+..+++|. .+|-.|++ =
T Consensus 188 F~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~--N 265 (371)
T TIGR03837 188 FCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL--N 265 (371)
T ss_pred EecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh--c
Confidence 5566777777888887777777666655432110111111 110001111145566788874 59999998 4
Q ss_pred eccCCchhHHHHHhhCCcEecc
Q 039043 339 VTHCGSGSLSEAMVNECQLVLL 360 (449)
Q Consensus 339 I~HgG~gs~~eal~~GvP~l~~ 360 (449)
+=. |==|+.-|..+|+|+|=-
T Consensus 266 fVR-GEDSFVRAqWAgkPfvWh 286 (371)
T TIGR03837 266 FVR-GEDSFVRAQWAGKPFVWH 286 (371)
T ss_pred Eee-chhHHHHHHHcCCCceee
Confidence 444 566999999999999843
No 494
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.41 E-value=9.1e+02 Score=25.10 Aligned_cols=59 Identities=8% Similarity=-0.106 Sum_probs=34.6
Q ss_pred eeccCCchhHHHH--HhhCCcEecccccc-chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEA--MVNECQLVLLPNVG-DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+... ..++.+.- .... ..++.++.++-+ |+- -..- -+.++|..++++.++
T Consensus 472 V~NN~~yg~i~~~q~~~~~~~~~--~~~~~~~~d~~~iA~a~-G~~--g~~v-----~~~~eL~~al~~a~~ 533 (574)
T PRK07979 472 NLNNRYLGMVKQWQDMIYSGRHS--QSYMQSLPDFVRLAEAY-GHV--GIQI-----SHPDELESKLSEALE 533 (574)
T ss_pred EEeCchhhHHHHHHHHhcCCccc--cccCCCCCCHHHHHHHC-CCE--EEEE-----CCHHHHHHHHHHHHh
Confidence 8888999876533 22232210 0111 236778888865 642 2222 378889999988875
No 495
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.39 E-value=91 Score=22.89 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc
Q 039043 13 FLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
+-.+.++|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887665
No 496
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.33 E-value=2.9e+02 Score=27.39 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=34.5
Q ss_pred hhcHHHHHHHHhhcCCCEEEEcC-C-CC---hHHHH---HHhCCceEEEecchHHHH
Q 039043 85 DLTEPAIESVLRHLKPDFVFFDF-T-HW---LPPLA---RKFGIKSVLYCIISPATI 133 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D~-~-~~---~~~~A---~~~giP~v~~~~~~~~~~ 133 (449)
+..-+++.+.|++.+.|.||-.+ | .| +...+ ++.|||+|.+.+..+...
T Consensus 322 ~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~ 378 (431)
T TIGR01918 322 KQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIAL 378 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhh
Confidence 35567788888888999988765 2 33 33333 467999999988666543
No 497
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=20.28 E-value=5.7e+02 Score=22.13 Aligned_cols=59 Identities=10% Similarity=-0.073 Sum_probs=34.0
Q ss_pred eeccCCchhHHHH--HhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEA--MVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~ea--l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..+|+|.+... ..++....... .+-++.++.++-+ |+- -..- -+.++|.+++++.++
T Consensus 104 V~NN~~yg~~~~~q~~~~~~~~~~~~--~~~~d~~~lA~a~-G~~--~~~v-----~~~~el~~al~~a~~ 164 (196)
T cd02013 104 VFRNRQWGAEKKNQVDFYNNRFVGTE--LESESFAKIAEAC-GAK--GITV-----DKPEDVGPALQKAIA 164 (196)
T ss_pred EEECchhHHHHHHHHHHcCCCccccc--CCCCCHHHHHHHC-CCE--EEEE-----CCHHHHHHHHHHHHh
Confidence 6688888876532 22332222211 1126677777755 653 2222 368888888888775
No 498
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=20.18 E-value=9e+02 Score=25.24 Aligned_cols=61 Identities=8% Similarity=-0.034 Sum_probs=35.5
Q ss_pred eeccCCchhHHHHH--hhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 338 FVTHCGSGSLSEAM--VNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 338 ~I~HgG~gs~~eal--~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
++..||+|.+.... .++-.....-....+++.++.++-+ |+ .-..- -+.++|.+++++.++
T Consensus 481 V~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~--~~~~v-----~~~~el~~al~~a~~ 543 (585)
T CHL00099 481 IINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GI--KGLRI-----KSRKDLKSSLKEALD 543 (585)
T ss_pred EEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CC--eEEEe-----CCHHHHHHHHHHHHh
Confidence 78888888776443 2332221111111246777777754 54 33332 378899999998864
No 499
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=20.14 E-value=1.3e+02 Score=31.01 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 92 ESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.+.+++.+||++|+... ...+|+++|||++-.
T Consensus 391 ~~~l~~~~~Dllig~s~--~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 391 LEAMEMLKPDIILTGKR--PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHHhcCCCEEEecCc--cchhHhhcCCCEEEc
Confidence 35668889999999872 126889999999753
No 500
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.11 E-value=1.1e+02 Score=27.96 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCEEEEcC-------CCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDF-------THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~-------~~~~~~~A~~~giP~v~~ 125 (449)
.+.+.+++++.++++||==. +--+..+|+.+|||++.+
T Consensus 55 ~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 55 EEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 35788899999999998322 223467899999999986
Done!