Query 039043
Match_columns 449
No_of_seqs 125 out of 1473
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 6.8E-63 2.3E-67 488.5 33.8 421 1-445 18-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 2E-57 6.8E-62 456.6 39.3 426 1-446 11-469 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 6.1E-58 2.1E-62 461.7 32.5 426 1-449 13-482 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 1.8E-55 6E-60 439.6 35.6 424 1-448 12-454 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 4E-55 1.4E-59 438.2 30.4 418 1-445 14-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 1.8E-45 6.3E-50 365.9 28.5 395 1-445 17-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 1.5E-44 5.3E-49 356.4 22.8 355 1-442 27-397 (400)
8 1iir_A Glycosyltransferase GTF 100.0 8.1E-42 2.8E-46 338.6 26.9 377 1-445 5-400 (415)
9 1rrv_A Glycosyltransferase GTF 100.0 3.8E-42 1.3E-46 341.1 20.8 375 1-444 5-399 (416)
10 3rsc_A CALG2; TDP, enediyne, s 100.0 1E-40 3.5E-45 330.7 28.2 384 1-446 25-414 (415)
11 3ia7_A CALG4; glycosysltransfe 100.0 5.4E-40 1.8E-44 323.9 28.6 384 1-446 9-399 (402)
12 3h4t_A Glycosyltransferase GTF 100.0 1.3E-40 4.3E-45 328.7 23.7 373 1-447 5-384 (404)
13 2yjn_A ERYCIII, glycosyltransf 100.0 5.4E-39 1.9E-43 320.9 22.9 381 1-446 25-436 (441)
14 2iyf_A OLED, oleandomycin glyc 100.0 2.1E-38 7.4E-43 315.5 25.8 382 1-445 12-399 (430)
15 2p6p_A Glycosyl transferase; X 100.0 4.4E-38 1.5E-42 308.6 24.3 361 1-448 5-382 (384)
16 3oti_A CALG3; calicheamicin, T 100.0 7.5E-36 2.6E-40 294.2 25.9 352 1-444 25-396 (398)
17 4fzr_A SSFS6; structural genom 100.0 5E-36 1.7E-40 295.4 18.6 357 1-441 20-396 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 2E-34 6.8E-39 283.2 23.5 360 1-445 6-388 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 1.9E-32 6.5E-37 270.9 27.7 365 1-446 25-409 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 7.2E-29 2.5E-33 240.9 24.4 303 2-407 7-324 (365)
21 2o6l_A UDP-glucuronosyltransfe 100.0 1.2E-27 4.1E-32 206.8 14.6 164 241-429 6-170 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.8 2E-19 6.7E-24 174.3 18.7 327 4-446 14-356 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.7 8.3E-16 2.9E-20 141.9 18.9 118 255-386 156-275 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 1.3E-15 4.4E-20 135.0 10.0 138 254-404 26-196 (224)
25 2jjm_A Glycosyl transferase, g 99.3 4.7E-10 1.6E-14 109.4 26.9 336 8-447 28-385 (394)
26 1v4v_A UDP-N-acetylglucosamine 99.3 1.2E-11 4.2E-16 119.9 15.1 137 255-421 197-342 (376)
27 3c48_A Predicted glycosyltrans 99.3 4E-10 1.4E-14 111.5 24.5 336 7-426 42-408 (438)
28 1vgv_A UDP-N-acetylglucosamine 99.3 2E-11 6.9E-16 118.6 13.5 130 255-407 204-342 (384)
29 3okp_A GDP-mannose-dependent a 99.3 1.4E-09 4.8E-14 105.7 25.0 329 6-447 18-379 (394)
30 2gek_A Phosphatidylinositol ma 99.2 2.2E-09 7.6E-14 104.8 25.2 160 258-446 209-382 (406)
31 3dzc_A UDP-N-acetylglucosamine 99.2 4.5E-11 1.6E-15 116.7 12.5 159 254-445 228-395 (396)
32 3ot5_A UDP-N-acetylglucosamine 99.2 3.7E-11 1.3E-15 117.6 10.7 162 254-444 222-392 (403)
33 2iw1_A Lipopolysaccharide core 99.2 1.4E-08 4.8E-13 97.9 27.6 162 257-447 196-371 (374)
34 3fro_A GLGA glycogen synthase; 99.2 2.6E-08 9E-13 98.0 28.6 166 258-447 252-430 (439)
35 2r60_A Glycosyl transferase, g 99.1 4.9E-09 1.7E-13 105.6 21.4 112 315-445 334-457 (499)
36 3beo_A UDP-N-acetylglucosamine 99.0 1.1E-09 3.8E-14 105.8 12.4 132 255-407 204-342 (375)
37 4hwg_A UDP-N-acetylglucosamine 99.0 1.3E-08 4.6E-13 98.5 16.9 128 256-407 203-342 (385)
38 2iuy_A Avigt4, glycosyltransfe 98.8 1.3E-07 4.5E-12 90.0 18.5 124 260-406 165-307 (342)
39 2x6q_A Trehalose-synthase TRET 98.8 3.1E-07 1.1E-11 89.9 21.3 112 315-447 292-414 (416)
40 3s28_A Sucrose synthase 1; gly 98.8 3.1E-07 1.1E-11 96.6 21.5 78 315-405 639-728 (816)
41 3oy2_A Glycosyltransferase B73 98.6 8.5E-06 2.9E-10 79.5 21.9 110 318-447 256-390 (413)
42 1rzu_A Glycogen synthase 1; gl 98.6 1E-05 3.4E-10 80.8 22.7 161 258-446 292-474 (485)
43 2qzs_A Glycogen synthase; glyc 98.5 1.1E-05 3.8E-10 80.5 22.8 112 316-447 347-476 (485)
44 2f9f_A First mannosyl transfer 98.4 8.8E-07 3E-11 75.8 10.1 129 258-407 24-162 (177)
45 2xci_A KDO-transferase, 3-deox 98.4 2.4E-05 8.3E-10 75.4 20.5 96 317-426 261-362 (374)
46 2hy7_A Glucuronosyltransferase 98.1 0.00014 4.6E-09 70.9 19.3 73 316-407 265-352 (406)
47 2vsy_A XCC0866; transferase, g 97.7 0.001 3.6E-08 67.5 17.7 114 316-445 434-557 (568)
48 4gyw_A UDP-N-acetylglucosamine 97.7 0.00085 2.9E-08 70.1 16.4 140 255-407 521-668 (723)
49 3qhp_A Type 1 capsular polysac 97.6 0.00031 1.1E-08 58.7 10.1 141 257-424 2-155 (166)
50 3q3e_A HMW1C-like glycosyltran 97.6 0.00074 2.5E-08 68.0 14.2 140 256-407 440-588 (631)
51 2bfw_A GLGA glycogen synthase; 97.5 0.0015 5.2E-08 56.2 12.6 77 317-407 96-181 (200)
52 3rhz_A GTF3, nucleotide sugar 97.2 0.0008 2.7E-08 63.6 7.6 110 317-443 215-336 (339)
53 3tov_A Glycosyl transferase fa 96.6 0.03 1E-06 53.0 13.8 98 2-125 14-116 (349)
54 1psw_A ADP-heptose LPS heptosy 96.1 0.049 1.7E-06 51.2 12.0 97 3-125 7-107 (348)
55 2x0d_A WSAF; GT4 family, trans 96.1 0.019 6.5E-07 55.8 9.2 78 316-407 295-379 (413)
56 3vue_A GBSS-I, granule-bound s 95.2 0.16 5.3E-06 51.1 12.4 85 315-406 381-476 (536)
57 1uqt_A Alpha, alpha-trehalose- 90.1 1.9 6.5E-05 42.4 11.0 109 318-447 333-454 (482)
58 2gt1_A Lipopolysaccharide hept 89.3 0.11 3.7E-06 48.4 1.3 132 255-407 177-322 (326)
59 3t5t_A Putative glycosyltransf 87.4 2.1 7.1E-05 42.1 9.1 109 317-446 353-472 (496)
60 3nb0_A Glycogen [starch] synth 86.5 3.2 0.00011 42.4 9.9 44 318-363 495-551 (725)
61 2wqk_A 5'-nucleotidase SURE; S 86.3 1.5 5.3E-05 38.8 6.8 98 12-127 16-127 (251)
62 2iz6_A Molybdenum cofactor car 84.8 8.5 0.00029 32.0 10.3 133 245-407 36-174 (176)
63 2phj_A 5'-nucleotidase SURE; S 79.6 2.7 9.2E-05 37.1 5.5 99 11-127 15-127 (251)
64 3dfz_A SIRC, precorrin-2 dehyd 75.6 20 0.00069 30.9 10.0 155 249-430 26-186 (223)
65 1l5x_A SurviVal protein E; str 75.0 4.3 0.00015 36.5 5.6 99 12-128 15-128 (280)
66 1xmp_A PURE, phosphoribosylami 71.9 39 0.0013 27.5 10.7 142 256-429 11-161 (170)
67 3pdi_B Nitrogenase MOFE cofact 70.8 15 0.0005 35.8 8.8 34 90-125 366-399 (458)
68 2e6c_A 5'-nucleotidase SURE; S 70.3 18 0.00063 31.7 8.4 43 12-55 15-57 (244)
69 1g5t_A COB(I)alamin adenosyltr 65.9 25 0.00085 29.7 8.1 89 2-107 34-128 (196)
70 3lp6_A Phosphoribosylaminoimid 65.8 39 0.0013 27.7 8.8 141 256-429 7-155 (174)
71 2a3d_A Protein (de novo three- 64.4 14 0.00049 23.6 4.7 33 413-445 4-36 (73)
72 1u11_A PURE (N5-carboxyaminoim 62.9 64 0.0022 26.6 10.3 143 256-430 21-172 (182)
73 3iqw_A Tail-anchored protein t 62.8 5.9 0.0002 36.8 4.0 33 4-36 24-56 (334)
74 1j9j_A Stationary phase surviV 60.1 19 0.00065 31.6 6.5 100 12-127 15-128 (247)
75 4b4k_A N5-carboxyaminoimidazol 57.7 79 0.0027 26.0 12.4 142 256-428 22-171 (181)
76 2vqe_B 30S ribosomal protein S 57.5 52 0.0018 28.9 8.9 32 99-130 158-192 (256)
77 2p90_A Hypothetical protein CG 57.2 1.1E+02 0.0038 27.9 11.5 135 255-407 101-251 (319)
78 3ors_A N5-carboxyaminoimidazol 57.1 76 0.0026 25.7 9.3 141 257-429 4-153 (163)
79 3tov_A Glycosyl transferase fa 56.0 13 0.00045 34.5 5.2 86 11-128 204-289 (349)
80 4dzz_A Plasmid partitioning pr 54.9 43 0.0015 27.7 8.0 31 4-34 10-40 (206)
81 3gl9_A Response regulator; bet 51.6 30 0.001 25.8 5.9 40 90-129 37-86 (122)
82 2pju_A Propionate catabolism o 49.7 17 0.00059 31.4 4.5 67 333-407 64-153 (225)
83 3rg8_A Phosphoribosylaminoimid 49.3 1E+02 0.0035 24.8 11.7 139 257-428 3-147 (159)
84 2q5c_A NTRC family transcripti 48.7 13 0.00044 31.4 3.4 68 332-407 51-141 (196)
85 1hjr_A Holliday junction resol 47.1 30 0.001 28.0 5.3 47 82-128 42-104 (158)
86 2lnd_A De novo designed protei 47.1 49 0.0017 22.9 5.5 50 352-407 49-101 (112)
87 3to5_A CHEY homolog; alpha(5)b 46.9 33 0.0011 26.8 5.4 39 91-129 49-97 (134)
88 3s40_A Diacylglycerol kinase; 46.8 21 0.0007 32.5 4.8 80 258-362 12-97 (304)
89 1o4v_A Phosphoribosylaminoimid 46.1 1.3E+02 0.0043 24.9 11.6 144 256-430 13-162 (183)
90 3kuu_A Phosphoribosylaminoimid 45.9 1.2E+02 0.0042 24.7 11.7 141 257-429 13-162 (174)
91 3l7i_A Teichoic acid biosynthe 45.6 12 0.0004 38.9 3.3 112 319-445 602-719 (729)
92 2lpm_A Two-component response 45.2 19 0.00066 27.7 3.7 36 90-125 44-85 (123)
93 2gk4_A Conserved hypothetical 45.0 31 0.0011 29.9 5.3 27 7-35 28-54 (232)
94 2jzc_A UDP-N-acetylglucosamine 44.6 36 0.0012 29.4 5.7 36 1-36 32-74 (224)
95 2qv7_A Diacylglycerol kinase D 44.6 21 0.00073 32.9 4.6 81 258-362 28-114 (337)
96 1o97_C Electron transferring f 44.6 25 0.00084 31.3 4.8 40 89-128 102-148 (264)
97 4ep4_A Crossover junction endo 44.3 48 0.0016 27.0 6.1 49 80-128 44-108 (166)
98 2x0d_A WSAF; GT4 family, trans 43.6 6.9 0.00024 37.4 1.1 27 8-34 63-89 (413)
99 2wam_A RV2714, conserved hypot 43.4 2E+02 0.0069 26.5 12.5 134 256-407 142-291 (351)
100 3l4e_A Uncharacterized peptida 43.1 43 0.0015 28.4 6.0 45 247-291 19-63 (206)
101 3io3_A DEHA2D07832P; chaperone 42.8 36 0.0012 31.5 5.9 32 4-35 26-59 (348)
102 1qv9_A F420-dependent methylen 42.4 47 0.0016 28.7 5.8 42 89-130 54-102 (283)
103 2yvq_A Carbamoyl-phosphate syn 42.0 10 0.00035 30.2 1.7 86 10-124 36-130 (143)
104 1qkk_A DCTD, C4-dicarboxylate 41.8 74 0.0025 24.6 7.0 48 353-407 74-121 (155)
105 1xp8_A RECA protein, recombina 41.8 61 0.0021 30.2 7.3 34 3-36 81-114 (366)
106 3t6k_A Response regulator rece 41.7 50 0.0017 25.0 5.8 41 89-129 38-88 (136)
107 2bon_A Lipid kinase; DAG kinas 40.8 41 0.0014 30.9 5.9 78 258-362 33-118 (332)
108 1efv_B Electron transfer flavo 40.3 32 0.0011 30.4 4.8 40 89-128 106-152 (255)
109 3da8_A Probable 5'-phosphoribo 39.7 1.8E+02 0.006 24.8 10.0 115 275-424 79-195 (215)
110 3m6m_D Sensory/regulatory prot 39.6 42 0.0014 25.8 5.1 39 90-128 49-99 (143)
111 1efp_B ETF, protein (electron 39.3 32 0.0011 30.3 4.6 40 89-128 103-149 (252)
112 3gi1_A LBP, laminin-binding pr 38.7 37 0.0013 30.5 5.1 82 20-126 174-258 (286)
113 3f6p_A Transcriptional regulat 38.7 48 0.0016 24.4 5.1 40 90-129 37-83 (120)
114 3o1l_A Formyltetrahydrofolate 38.3 1.8E+02 0.0062 26.2 9.6 104 273-404 169-274 (302)
115 1ydh_A AT5G11950; structural g 37.9 1.7E+02 0.0059 24.8 9.0 45 317-362 88-143 (216)
116 4grd_A N5-CAIR mutase, phospho 37.6 1.7E+02 0.0057 23.9 11.7 144 255-429 11-162 (173)
117 3nrb_A Formyltetrahydrofolate 37.4 1.3E+02 0.0044 26.9 8.4 102 275-404 155-258 (287)
118 1p3y_1 MRSD protein; flavoprot 37.3 1.2E+02 0.0041 25.3 7.7 140 256-407 9-186 (194)
119 3tqr_A Phosphoribosylglycinami 37.2 1.6E+02 0.0056 24.9 8.7 102 275-404 73-176 (215)
120 3s2u_A UDP-N-acetylglucosamine 36.6 53 0.0018 30.4 6.1 100 256-359 3-120 (365)
121 3kcq_A Phosphoribosylglycinami 36.6 1.8E+02 0.006 24.7 8.8 102 275-404 72-175 (215)
122 1psw_A ADP-heptose LPS heptosy 36.5 58 0.002 29.7 6.3 36 89-127 253-288 (348)
123 2jk1_A HUPR, hydrogenase trans 36.1 99 0.0034 23.2 6.8 49 353-407 71-119 (139)
124 3c3m_A Response regulator rece 36.0 67 0.0023 24.3 5.7 39 90-128 38-86 (138)
125 3obi_A Formyltetrahydrofolate 35.5 1.4E+02 0.0048 26.7 8.3 102 275-404 156-259 (288)
126 3io5_A Recombination and repai 35.1 1.1E+02 0.0039 27.9 7.6 41 3-43 35-79 (333)
127 1pjq_A CYSG, siroheme synthase 35.1 2.8E+02 0.0097 26.5 11.1 145 255-430 12-168 (457)
128 3u7q_A Nitrogenase molybdenum- 35.1 24 0.00083 34.6 3.4 36 88-125 406-441 (492)
129 2i2c_A Probable inorganic poly 34.8 16 0.00053 32.7 1.9 29 332-362 35-69 (272)
130 3gt7_A Sensor protein; structu 34.8 67 0.0023 25.0 5.6 40 89-128 41-90 (154)
131 3cg0_A Response regulator rece 34.6 67 0.0023 24.2 5.5 40 90-129 45-92 (140)
132 1zgz_A Torcad operon transcrip 34.6 73 0.0025 23.2 5.6 40 90-129 37-83 (122)
133 2an1_A Putative kinase; struct 33.9 21 0.00071 32.1 2.6 32 329-362 60-95 (292)
134 1meo_A Phosophoribosylglycinam 33.8 2.1E+02 0.0073 24.0 9.7 120 270-424 63-185 (209)
135 4ds3_A Phosphoribosylglycinami 33.6 95 0.0032 26.3 6.5 106 271-404 71-179 (209)
136 1yt5_A Inorganic polyphosphate 33.6 16 0.00054 32.3 1.7 53 332-407 41-96 (258)
137 2rjn_A Response regulator rece 33.6 72 0.0025 24.6 5.7 41 89-129 41-89 (154)
138 3ug7_A Arsenical pump-driving 33.4 1.3E+02 0.0045 27.6 8.2 32 4-35 34-65 (349)
139 3lou_A Formyltetrahydrofolate 33.3 1.6E+02 0.0055 26.4 8.4 102 275-404 161-264 (292)
140 3p9x_A Phosphoribosylglycinami 33.2 1.2E+02 0.004 25.8 7.0 102 275-404 71-174 (211)
141 3grc_A Sensor protein, kinase; 33.1 80 0.0027 23.8 5.8 41 89-129 40-90 (140)
142 2q5c_A NTRC family transcripti 33.1 75 0.0026 26.6 5.8 37 91-129 134-170 (196)
143 3nhm_A Response regulator; pro 33.0 88 0.003 23.2 6.0 39 89-127 37-85 (133)
144 3a10_A Response regulator; pho 32.9 1E+02 0.0035 22.1 6.2 39 90-128 36-82 (116)
145 3b2n_A Uncharacterized protein 32.8 76 0.0026 23.8 5.5 40 89-128 39-86 (133)
146 3qjg_A Epidermin biosynthesis 32.8 2E+02 0.0069 23.5 8.6 113 256-380 6-142 (175)
147 3n0v_A Formyltetrahydrofolate 32.7 1.8E+02 0.0062 25.9 8.6 102 275-404 156-259 (286)
148 3eod_A Protein HNR; response r 32.7 75 0.0026 23.5 5.5 40 89-128 41-88 (130)
149 3lyh_A Cobalamin (vitamin B12) 32.7 1.6E+02 0.0054 22.2 8.0 37 256-292 6-42 (126)
150 4e7p_A Response regulator; DNA 32.4 81 0.0028 24.2 5.8 40 89-128 56-103 (150)
151 2xdq_B Light-independent proto 32.3 1.2E+02 0.004 29.8 7.9 34 90-125 363-396 (511)
152 1kjn_A MTH0777; hypotethical p 32.3 17 0.0006 28.9 1.5 30 12-41 24-53 (157)
153 1u0t_A Inorganic polyphosphate 32.2 17 0.00059 33.0 1.8 32 329-362 72-107 (307)
154 3qua_A Putative uncharacterize 32.1 1.4E+02 0.0048 25.0 7.3 45 317-362 100-155 (199)
155 3qjg_A Epidermin biosynthesis 31.7 27 0.00091 28.9 2.6 32 10-41 18-49 (175)
156 1jkx_A GART;, phosphoribosylgl 31.7 2.2E+02 0.0074 24.1 8.6 113 276-423 70-184 (212)
157 3oow_A Phosphoribosylaminoimid 31.6 2.1E+02 0.0071 23.2 12.5 141 257-429 6-155 (166)
158 3av3_A Phosphoribosylglycinami 31.4 1.7E+02 0.0058 24.7 7.9 119 270-423 66-187 (212)
159 3lqk_A Dipicolinate synthase s 31.2 29 0.00099 29.4 2.9 35 8-42 18-53 (201)
160 3igf_A ALL4481 protein; two-do 31.1 45 0.0015 31.3 4.5 28 5-32 11-38 (374)
161 1srr_A SPO0F, sporulation resp 31.0 81 0.0028 23.1 5.3 39 91-129 39-85 (124)
162 2a9o_A Response regulator; ess 31.0 95 0.0032 22.4 5.7 39 91-129 37-82 (120)
163 4h1h_A LMO1638 protein; MCCF-l 30.7 64 0.0022 29.5 5.4 86 246-347 5-92 (327)
164 2hy6_A General control protein 30.4 78 0.0027 17.9 3.7 29 395-428 4-32 (34)
165 2gt1_A Lipopolysaccharide hept 30.3 89 0.0031 28.1 6.4 41 2-42 6-48 (326)
166 1mio_B Nitrogenase molybdenum 30.2 46 0.0016 32.1 4.5 35 89-125 375-409 (458)
167 1xhf_A DYE resistance, aerobic 30.0 1.1E+02 0.0037 22.2 5.9 40 90-129 38-84 (123)
168 1vi6_A 30S ribosomal protein S 29.4 41 0.0014 28.6 3.5 31 99-129 115-148 (208)
169 3auf_A Glycinamide ribonucleot 29.3 2.7E+02 0.0092 23.8 9.4 101 276-404 92-194 (229)
170 3hr8_A Protein RECA; alpha and 29.3 98 0.0034 28.7 6.4 34 3-36 68-101 (356)
171 3hv2_A Response regulator/HD d 29.3 87 0.003 24.1 5.5 40 89-128 48-95 (153)
172 2gkg_A Response regulator homo 29.2 64 0.0022 23.6 4.5 47 353-407 79-125 (127)
173 2oxj_A Hybrid alpha/beta pepti 29.1 83 0.0028 17.8 3.6 29 395-428 4-32 (34)
174 3tsa_A SPNG, NDP-rhamnosyltran 29.1 67 0.0023 29.7 5.4 29 332-362 114-143 (391)
175 2w6b_A RHO guanine nucleotide 28.6 74 0.0025 20.3 3.6 35 414-448 20-54 (56)
176 3i42_A Response regulator rece 28.6 85 0.0029 23.1 5.1 40 89-128 37-86 (127)
177 3pdi_A Nitrogenase MOFE cofact 28.4 42 0.0014 32.7 3.9 36 88-125 390-425 (483)
178 3lyu_A Putative hydrogenase; t 28.4 42 0.0014 26.4 3.2 96 10-123 30-135 (142)
179 3cz5_A Two-component response 27.8 1.2E+02 0.004 23.3 6.0 40 90-129 42-89 (153)
180 1pno_A NAD(P) transhydrogenase 27.8 62 0.0021 26.3 4.0 25 10-34 40-64 (180)
181 2pl1_A Transcriptional regulat 27.7 1.3E+02 0.0044 21.6 6.0 40 90-129 35-82 (121)
182 1d4o_A NADP(H) transhydrogenas 27.4 63 0.0022 26.3 4.0 25 10-34 39-63 (184)
183 3kcn_A Adenylate cyclase homol 27.3 1.6E+02 0.0053 22.5 6.7 49 352-407 74-123 (151)
184 1kyq_A Met8P, siroheme biosynt 27.1 3.1E+02 0.011 24.2 9.1 37 249-293 8-44 (274)
185 3md9_A Hemin-binding periplasm 27.0 68 0.0023 27.8 4.7 34 93-126 53-89 (255)
186 1qo0_D AMIR; binding protein, 27.0 1.7E+02 0.0059 23.6 7.2 48 353-407 78-125 (196)
187 3trh_A Phosphoribosylaminoimid 26.9 2.5E+02 0.0087 22.7 11.6 142 256-429 6-156 (169)
188 3cu5_A Two component transcrip 26.8 1.1E+02 0.0036 23.3 5.5 37 91-127 41-85 (141)
189 3vue_A GBSS-I, granule-bound s 26.8 29 0.00099 34.4 2.4 27 5-33 26-52 (536)
190 2j48_A Two-component sensor ki 26.8 1.1E+02 0.0037 21.8 5.3 39 90-128 36-84 (119)
191 2rdm_A Response regulator rece 26.7 1.2E+02 0.0041 22.3 5.7 40 90-129 40-89 (132)
192 2o1e_A YCDH; alpha-beta protei 26.6 90 0.0031 28.3 5.6 82 19-125 184-268 (312)
193 2qzj_A Two-component response 26.4 95 0.0032 23.4 5.1 40 90-129 39-85 (136)
194 3bgw_A DNAB-like replicative h 26.4 44 0.0015 32.2 3.6 35 3-37 204-238 (444)
195 3j20_B 30S ribosomal protein S 26.3 47 0.0016 28.1 3.3 32 99-130 111-145 (202)
196 2h31_A Multifunctional protein 26.3 4.2E+02 0.014 25.1 12.6 137 256-428 265-410 (425)
197 1eiw_A Hypothetical protein MT 26.3 61 0.0021 24.4 3.6 66 329-406 35-109 (111)
198 1p9o_A Phosphopantothenoylcyst 26.2 37 0.0013 31.0 2.8 29 5-35 62-90 (313)
199 3auf_A Glycinamide ribonucleot 25.9 1.9E+02 0.0063 24.9 7.2 91 11-128 34-132 (229)
200 3bbn_B Ribosomal protein S2; s 25.8 14 0.00049 32.0 -0.0 31 99-129 157-190 (231)
201 3bch_A 40S ribosomal protein S 25.6 49 0.0017 29.0 3.3 32 99-130 151-185 (253)
202 3h4t_A Glycosyltransferase GTF 25.4 1.2E+02 0.0041 28.3 6.5 35 258-294 3-37 (404)
203 2q6t_A DNAB replication FORK h 25.4 67 0.0023 30.8 4.7 35 3-37 207-242 (444)
204 4hn9_A Iron complex transport 25.3 41 0.0014 30.8 3.1 35 93-127 110-145 (335)
205 3vot_A L-amino acid ligase, BL 25.1 1.1E+02 0.0038 28.8 6.3 35 88-122 64-101 (425)
206 2etv_A Iron(III) ABC transport 25.1 35 0.0012 31.4 2.6 32 95-126 92-125 (346)
207 3mc3_A DSRE/DSRF-like family p 25.1 51 0.0017 25.6 3.1 35 6-40 28-62 (134)
208 2b8t_A Thymidine kinase; deoxy 25.1 95 0.0032 26.6 5.1 30 5-34 21-50 (223)
209 3to5_A CHEY homolog; alpha(5)b 25.0 95 0.0032 24.0 4.7 47 353-406 86-132 (134)
210 2fsv_C NAD(P) transhydrogenase 24.9 73 0.0025 26.5 4.0 25 10-34 63-87 (203)
211 3m3h_A OPRT, oprtase, orotate 24.8 68 0.0023 27.8 4.2 39 87-125 74-117 (234)
212 3n53_A Response regulator rece 24.8 74 0.0025 24.0 4.1 40 90-129 37-86 (140)
213 2ywr_A Phosphoribosylglycinami 24.4 1.8E+02 0.0061 24.6 6.8 91 11-128 13-111 (216)
214 1djl_A Transhydrogenase DIII; 24.4 75 0.0026 26.5 4.0 25 10-34 62-86 (207)
215 3rqi_A Response regulator prot 24.4 94 0.0032 25.0 4.9 40 90-129 42-89 (184)
216 1j2m_A CPI-17, 17-kDa PKC-pote 24.3 45 0.0015 24.4 2.3 36 414-449 63-99 (99)
217 3r8n_B 30S ribosomal protein S 24.2 55 0.0019 28.0 3.4 31 99-129 149-182 (218)
218 4gud_A Imidazole glycerol phos 24.0 1.6E+02 0.0054 24.5 6.4 29 257-291 4-32 (211)
219 3m48_A General control protein 24.0 75 0.0026 17.9 2.7 28 396-428 4-31 (33)
220 3av3_A Phosphoribosylglycinami 23.9 3.2E+02 0.011 22.9 8.3 90 12-128 16-113 (212)
221 3dez_A OPRT, oprtase, orotate 23.9 70 0.0024 27.9 4.1 39 87-125 86-129 (243)
222 3ia7_A CALG4; glycosysltransfe 23.6 1.1E+02 0.0038 28.1 5.9 35 257-293 6-40 (402)
223 2w36_A Endonuclease V; hypoxan 23.4 1.3E+02 0.0045 25.8 5.6 38 89-126 91-138 (225)
224 2ywr_A Phosphoribosylglycinami 23.3 3.3E+02 0.011 22.9 8.7 101 276-404 71-173 (216)
225 1mio_A Nitrogenase molybdenum 23.3 49 0.0017 32.7 3.3 36 88-125 445-480 (533)
226 3e35_A Uncharacterized protein 23.3 3.7E+02 0.013 24.4 8.9 149 255-427 104-272 (325)
227 2q8p_A Iron-regulated surface 23.1 41 0.0014 29.3 2.5 33 95-127 56-90 (260)
228 1g63_A Epidermin modifying enz 23.1 37 0.0013 28.2 2.0 34 9-42 14-47 (181)
229 3psh_A Protein HI_1472; substr 22.9 54 0.0019 29.7 3.4 34 94-127 79-114 (326)
230 3cx3_A Lipoprotein; zinc-bindi 22.8 61 0.0021 28.9 3.6 81 20-125 172-255 (284)
231 2b4a_A BH3024; flavodoxin-like 22.8 1.2E+02 0.0042 22.6 5.1 38 89-126 49-95 (138)
232 2bru_C NAD(P) transhydrogenase 22.7 71 0.0024 26.0 3.4 26 10-35 47-72 (186)
233 2zkq_b 40S ribosomal protein S 22.7 61 0.0021 29.1 3.4 32 99-130 118-152 (295)
234 3u7q_B Nitrogenase molybdenum- 22.6 92 0.0031 30.7 5.1 36 88-125 427-469 (523)
235 3u5c_A 40S ribosomal protein S 22.4 54 0.0019 28.7 3.0 33 98-130 116-151 (252)
236 1tjn_A Sirohydrochlorin cobalt 22.4 2.9E+02 0.0098 21.8 7.4 36 256-291 25-62 (156)
237 1u7z_A Coenzyme A biosynthesis 22.4 63 0.0022 27.8 3.4 22 13-34 37-58 (226)
238 3cmw_A Protein RECA, recombina 22.3 2.3E+02 0.0078 32.4 8.6 37 2-38 389-425 (1706)
239 1fy2_A Aspartyl dipeptidase; s 22.2 1.2E+02 0.004 26.1 5.2 44 244-289 22-65 (229)
240 3c97_A Signal transduction his 22.2 1.7E+02 0.0058 21.8 5.9 28 90-117 45-75 (140)
241 3c3g_A Alpha/beta peptide with 22.1 1.2E+02 0.004 17.1 3.6 29 395-428 3-31 (33)
242 2xws_A Sirohydrochlorin cobalt 21.9 2.6E+02 0.0088 21.0 7.7 36 256-291 4-41 (133)
243 2qv0_A Protein MRKE; structura 21.7 1.7E+02 0.0059 21.8 5.8 29 90-118 46-77 (143)
244 3kkj_A Amine oxidase, flavin-c 21.7 48 0.0016 28.2 2.7 18 14-31 15-32 (336)
245 3lrx_A Putative hydrogenase; a 21.6 60 0.0021 25.9 3.0 24 10-34 35-58 (158)
246 3iz6_A 40S ribosomal protein S 21.6 39 0.0013 30.4 1.9 33 98-130 121-156 (305)
247 1kgs_A DRRD, DNA binding respo 21.2 1.5E+02 0.0051 24.5 5.8 41 90-130 37-85 (225)
248 4e5s_A MCCFLIKE protein (BA_56 21.2 1.2E+02 0.0042 27.7 5.4 85 247-347 6-92 (331)
249 3ib6_A Uncharacterized protein 21.2 3.2E+02 0.011 21.9 7.9 95 13-127 39-143 (189)
250 1zco_A 2-dehydro-3-deoxyphosph 21.1 4.2E+02 0.014 23.1 9.5 52 353-405 191-256 (262)
251 3e18_A Oxidoreductase; dehydro 20.9 4.1E+02 0.014 24.1 9.2 109 257-386 7-124 (359)
252 3aek_B Light-independent proto 20.8 65 0.0022 31.8 3.6 35 89-125 339-373 (525)
253 2bw0_A 10-FTHFDH, 10-formyltet 20.8 1.7E+02 0.0059 26.7 6.3 85 8-128 29-130 (329)
254 1qb7_A APRT, adenine phosphori 20.8 1.6E+02 0.0055 25.3 5.8 39 87-125 57-100 (236)
255 1uo4_A General control protein 20.7 1E+02 0.0036 17.4 2.8 29 395-428 4-32 (34)
256 1qgu_B Protein (nitrogenase mo 20.7 78 0.0027 31.1 4.1 35 89-125 424-465 (519)
257 3zqu_A Probable aromatic acid 20.6 46 0.0016 28.3 2.1 32 10-41 17-48 (209)
258 2r7a_A Bacterial heme binding 20.5 72 0.0025 27.6 3.6 33 94-126 54-89 (256)
259 1v5e_A Pyruvate oxidase; oxido 20.4 2.1E+02 0.007 28.5 7.3 77 274-361 7-101 (590)
260 2wh6_B BCL-2-like protein 11; 20.2 34 0.0011 17.8 0.7 15 10-24 2-16 (26)
261 2qvg_A Two component response 20.2 1.8E+02 0.0063 21.6 5.7 41 89-129 43-99 (143)
262 2a33_A Hypothetical protein; s 20.2 2.7E+02 0.0094 23.5 7.0 44 318-362 93-147 (215)
263 3cg4_A Response regulator rece 20.1 1.3E+02 0.0045 22.5 4.8 39 89-127 41-89 (142)
264 4b4o_A Epimerase family protei 20.1 67 0.0023 28.5 3.3 28 4-33 6-33 (298)
265 3h5i_A Response regulator/sens 20.1 2E+02 0.0067 21.5 5.8 38 91-128 41-87 (140)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=6.8e-63 Score=488.48 Aligned_cols=421 Identities=21% Similarity=0.281 Sum_probs=325.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCC--CEEEEEcCCccccccCCCC-C-CCCCEEEEEecCCCCCCCCCCCCCCCCCCCCc
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERG--HRISFLLPAKAITKFEPSN-L-HRNLITFIPVSVPRVDGLPPGAETTNDVPFPL 76 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~g-~-~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~ 76 (449)
++|+|++||++|++.||+.|+++| +.|||++++.....+.+.. . .++ |+|..+| ++++.+.+...+. ...
T Consensus 18 ~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~-i~~~~ip----dglp~~~~~~~~~-~~~ 91 (454)
T 3hbf_A 18 VLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPN-IKYYNVH----DGLPKGYVSSGNP-REP 91 (454)
T ss_dssp EECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTT-EEEEECC----CCCCTTCCCCSCT-THH
T ss_pred EEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCC-ceEEecC----CCCCCCccccCCh-HHH
Confidence 589999999999999999999999 9999999986655553321 1 233 9999999 7888765544432 222
Q ss_pred HH-HHHHHHhhcHHHHHHHHhh--cCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCC
Q 039043 77 HP-LLMTAMDLTEPAIESVLRH--LKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDND 152 (449)
Q Consensus 77 ~~-~~~~~~~~~~~~~~~ll~~--~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (449)
.. ++......+.+.+.+++++ .++||||+|. ++|+..+|+++|||++.++++++..++.+.+.+............
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (454)
T 3hbf_A 92 IFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVH 171 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCCCccc
Confidence 22 3333333344555555554 3789999999 999999999999999999999999888777765443321100000
Q ss_pred CCCCCCCCCCCccccCchhhchhhhhhhc-cCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeC
Q 039043 153 LLRPPQGFPTSKIRLRAHEARGLAAATVK-EFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSG 231 (449)
Q Consensus 153 ~~~~~~~~p~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vG 231 (449)
...+...+|+ +...+..+++..+.. ..........+..+....++++++||+++||+++++.+++.+ +++++||
T Consensus 172 ~~~~~~~iPg----~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~-~~v~~vG 246 (454)
T 3hbf_A 172 DVKSIDVLPG----FPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF-KLLLNVG 246 (454)
T ss_dssp TSSCBCCSTT----SCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS-SCEEECC
T ss_pred cccccccCCC----CCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcC-CCEEEEC
Confidence 1112223444 222333444433320 111223555666777888999999999999999988888766 5899999
Q ss_pred ccCCCCCC--ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhH
Q 039043 232 PALPESPR--FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGF 309 (449)
Q Consensus 232 p~~~~~~~--~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~ 309 (449)
|+....+. ...+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||+++.. ....+|+++
T Consensus 247 Pl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~-----~~~~lp~~~ 321 (454)
T 3hbf_A 247 PFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD-----PKEKLPKGF 321 (454)
T ss_dssp CHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC-----HHHHSCTTH
T ss_pred CcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-----chhcCCHhH
Confidence 99753321 12356789999999889999999999999999999999999999999999999875 345688888
Q ss_pred HHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCC
Q 039043 310 EERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 310 ~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
..+.. +|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||+++++.||+|+.++..+
T Consensus 322 ~~~~~-~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~-- 398 (454)
T 3hbf_A 322 LERTK-TKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGV-- 398 (454)
T ss_dssp HHHTT-TTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGS--
T ss_pred HhhcC-CceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCC--
Confidence 77654 567777999999999999988899999999999999999999999999999999999999559999998765
Q ss_pred CcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHH
Q 039043 390 GLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLH 445 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~ 445 (449)
++.++|.++|+++|++ +.+++||+||+++++++++ +|++.+.+++|++.+.
T Consensus 399 --~~~~~l~~av~~ll~~---~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 399 --LTKESIKKALELTMSS---EKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp --CCHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 9999999999999997 5556999999999999874 4778889999999875
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=2e-57 Score=456.55 Aligned_cols=426 Identities=23% Similarity=0.338 Sum_probs=308.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhC-CCEEEEEcCCc--cccccCCCCC--CCCCEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAER-GHRISFLLPAK--AITKFEPSNL--HRNLITFIPVSVPRVDGLPPGAETTNDVPFP 75 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~--~~~~~~~~g~--~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~ 75 (449)
++|+|++||++|++.||++|++| ||+|||++++. +...+++... .++ ++|+.+|... ++. . .. ...
T Consensus 11 ~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~-i~~~~l~~~~---~~~-~---~~-~~~ 81 (480)
T 2vch_A 11 IIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSS-ISSVFLPPVD---LTD-L---SS-STR 81 (480)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTT-EEEEECCCCC---CTT-S---CT-TCC
T ss_pred EecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCC-ceEEEcCCCC---CCC-C---CC-chh
Confidence 58999999999999999999998 99999999987 4444432100 112 9999998321 111 1 11 112
Q ss_pred cHHHHHHHHhhcHHHHHHHHhhc----CC-CEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC
Q 039043 76 LHPLLMTAMDLTEPAIESVLRHL----KP-DFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT 149 (449)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ll~~~----~p-D~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (449)
....+........+.+.+++++. ++ |+||+|. +.|+..+|+++|||++.++++++...+.+.+.+.........
T Consensus 82 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (480)
T 2vch_A 82 IESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCE 161 (480)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhcCCCc
Confidence 33334444555667788888763 78 9999999 889999999999999999999887666655444322111110
Q ss_pred CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh---hcCCC
Q 039043 150 DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS---QFGKP 226 (449)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~---~~~~~ 226 (449)
..+... ...+|+. +.+... ++...+.......+..+.+....+....++++|++.+++++....+.. .+ ++
T Consensus 162 ~~~~~~-~~~~Pg~-~p~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~-~~ 235 (480)
T 2vch_A 162 FRELTE-PLMLPGC-VPVAGK---DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDK-PP 235 (480)
T ss_dssp GGGCSS-CBCCTTC-CCBCGG---GSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTC-CC
T ss_pred ccccCC-cccCCCC-CCCChH---HCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCC-Cc
Confidence 000000 1112221 011111 111111101111223333444556677889999999999877776653 13 58
Q ss_pred eEEeCccCCCCCC---ccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-----
Q 039043 227 VILSGPALPESPR---FALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGH----- 298 (449)
Q Consensus 227 ~~~vGp~~~~~~~---~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~----- 298 (449)
+++|||+...... .+.+.++.+||+.++++++|||||||+...+.+++..++.+|+.++.+|||+++.....
T Consensus 236 v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~ 315 (480)
T 2vch_A 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSY 315 (480)
T ss_dssp EEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTT
T ss_pred EEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccc
Confidence 9999999865422 23556799999998888999999999998899999999999999999999999875310
Q ss_pred ------CccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHH
Q 039043 299 ------DTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARL 372 (449)
Q Consensus 299 ------~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~ 372 (449)
.+....+|+++..+.+..++++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||++
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~ 395 (480)
T 2vch_A 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVL 395 (480)
T ss_dssp TCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHH
T ss_pred cccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchHHHHH
Confidence 10224689999888888888888899999999999999999999999999999999999999999999999999
Q ss_pred H-HhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh---cCc-chHHHHHHHHHHHh
Q 039043 373 M-GEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS---ERL-ENSYLDGFVQKLHG 446 (449)
Q Consensus 373 v-~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~---~~~-~~~~~~~~~~~~~~ 446 (449)
+ ++. |+|+.++..+ ++.++.++|.++|+++|++ +.+++||+||+++++++++ ++| +.+++++|++.+.+
T Consensus 396 l~~~~-G~g~~l~~~~-~~~~~~~~l~~av~~vl~~---~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~~~~ 469 (480)
T 2vch_A 396 LSEDI-RAALRPRAGD-DGLVRREEVARVVKGLMEG---EEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKA 469 (480)
T ss_dssp HHHTT-CCEECCCCCT-TSCCCHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHh-CeEEEeeccc-CCccCHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7 576 9999997641 2349999999999999984 3348999999999999986 544 57789999998864
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=6.1e-58 Score=461.69 Aligned_cols=426 Identities=20% Similarity=0.298 Sum_probs=308.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCC------CCCCEEEEEecCCCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNL------HRNLITFIPVSVPRVDGLPPGAETTNDVPF 74 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~------~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~ 74 (449)
++|+|++||++|++.||++|++|||+|||++++.+...+.+... .++ ++|+.+| ++++.. +...+...
T Consensus 13 ~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~-i~~~~l~----~~lp~~-~~~~~~~~ 86 (482)
T 2pq6_A 13 MIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD-FNFESIP----DGLTPM-EGDGDVSQ 86 (482)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------C-EEEEEEC----CCCC----------C
T ss_pred EecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCc-eEEEECC----CCCCCc-ccccCcch
Confidence 58999999999999999999999999999999987666544300 012 9999998 566542 10001112
Q ss_pred CcHHHHHHHHhhcHHHHHHHHhh-------cCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhcc-
Q 039043 75 PLHPLLMTAMDLTEPAIESVLRH-------LKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRE- 145 (449)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ll~~-------~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~- 145 (449)
....++......+.+.+.+++++ .+|||||+|. +.|+..+|+++|||+|.++++++.....+.+.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (482)
T 2pq6_A 87 DVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERG 166 (482)
T ss_dssp CHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhcC
Confidence 23333333334566667777764 4799999999 89999999999999999999988766554433221110
Q ss_pred -ccCCCC-----C-CCCCCCCCCCCccccCchhhchhhhhhhccC---CCchHHHHHHhhhccCCcEEEEcCccccccch
Q 039043 146 -RTLTDN-----D-LLRPPQGFPTSKIRLRAHEARGLAAATVKEF---GGGLSFAKRNLLSLSECDAIGFKTCREIEGPY 215 (449)
Q Consensus 146 -~~~~~~-----~-~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 215 (449)
.+.... + .......+|. +...+..+++..+. .. ......+....+....++++++|++++||+++
T Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~ 241 (482)
T 2pq6_A 167 IIPFKDESYLTNGCLETKVDWIPG----LKNFRLKDIVDFIR-TTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241 (482)
T ss_dssp CSSCSSGGGGTSSGGGCBCCSSTT----CCSCBGGGSCGGGC-CSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHH
T ss_pred CCCCccccccccccccCccccCCC----CCCCchHHCchhhc-cCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHH
Confidence 111100 0 0111112222 11112222322221 10 11123333455567788999999999999998
Q ss_pred HHHhhhhcCCCeEEeCccCCC-CCC----------cc---chhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHH
Q 039043 216 CDYIGSQFGKPVILSGPALPE-SPR----------FA---LEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGF 281 (449)
Q Consensus 216 ~~~~~~~~~~~~~~vGp~~~~-~~~----------~~---~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al 281 (449)
++.+++.+ +++++|||+... ... .+ .+.++.+|++.++++++|||||||+...+.+++..++.+|
T Consensus 242 ~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l 320 (482)
T 2pq6_A 242 INALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGL 320 (482)
T ss_dssp HHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHH
Confidence 88888877 789999999652 111 11 2335789999988889999999999988899999999999
Q ss_pred HhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccc
Q 039043 282 ELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLP 361 (449)
Q Consensus 282 ~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P 361 (449)
+.++.+|+|+++...... ....+|+++..+. .+|+.+.+|+||.++|+|+++++||||||+||++||+++|||||++|
T Consensus 321 ~~~~~~~l~~~~~~~~~~-~~~~l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P 398 (482)
T 2pq6_A 321 ANCKKSFLWIIRPDLVIG-GSVIFSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP 398 (482)
T ss_dssp HHTTCEEEEECCGGGSTT-TGGGSCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC
T ss_pred HhcCCcEEEEEcCCcccc-ccccCcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEecC
Confidence 999999999997542100 1123788887665 35788889999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHH-hhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHH
Q 039043 362 NVGDQIINARLMG-EELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSY 436 (449)
Q Consensus 362 ~~~DQ~~na~~v~-~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~ 436 (449)
++.||+.||++++ +. |+|+.++ .+ +++++|.++|+++|+| +.+++|++||+++++.+++ +|++.++
T Consensus 399 ~~~dQ~~na~~~~~~~-G~g~~l~-~~----~~~~~l~~~i~~ll~~---~~~~~~r~~a~~l~~~~~~a~~~gGss~~~ 469 (482)
T 2pq6_A 399 FFADQPTDCRFICNEW-EIGMEID-TN----VKREELAKLINEVIAG---DKGKKMKQKAMELKKKAEENTRPGGCSYMN 469 (482)
T ss_dssp CSTTHHHHHHHHHHTS-CCEEECC-SS----CCHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred cccchHHHHHHHHHHh-CEEEEEC-CC----CCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999997 56 9999998 44 9999999999999998 3334799999999999986 3668899
Q ss_pred HHHHHHHHHhccC
Q 039043 437 LDGFVQKLHGLLN 449 (449)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (449)
+++|++.+.+++|
T Consensus 470 l~~~v~~~~~~~~ 482 (482)
T 2pq6_A 470 LNKVIKDVLLKQN 482 (482)
T ss_dssp HHHHHHHTTCC--
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988776
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=1.8e-55 Score=439.63 Aligned_cols=424 Identities=21% Similarity=0.298 Sum_probs=302.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCC--EEEEEcCCccccccCCCCC---CCCCEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGH--RISFLLPAKAITKFEPSNL---HRNLITFIPVSVPRVDGLPPGAETTNDVPFP 75 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh--~Vt~~~~~~~~~~~~~~g~---~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~ 75 (449)
++|+|++||++|++.||+.|++||| .|||++++.....+.+... .++ ++|+.++ ++++...+... ....
T Consensus 12 ~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~-i~~~~i~----~glp~~~~~~~-~~~~ 85 (456)
T 2c1x_A 12 VLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCN-IKSYDIS----DGVPEGYVFAG-RPQE 85 (456)
T ss_dssp EECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTT-EEEEECC----CCCCTTCCCCC-CTTH
T ss_pred EEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCc-eEEEeCC----CCCCCcccccC-ChHH
Confidence 5899999999999999999999975 4688888754443322110 122 9999987 56665433211 1112
Q ss_pred cHHHHHHHH-hhcHHHHHHHHhh--cCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC--
Q 039043 76 LHPLLMTAM-DLTEPAIESVLRH--LKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT-- 149 (449)
Q Consensus 76 ~~~~~~~~~-~~~~~~~~~ll~~--~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (449)
....+.... ..+.+.+.+++++ .+||+||+|. +.|+..+|+++|||+|.++++++.....+.+.+.........
T Consensus 86 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (456)
T 2c1x_A 86 DIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGI 165 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccCCccc
Confidence 222222222 2222334444433 4899999999 889999999999999999999887665544332221110000
Q ss_pred CCCCCCCCCCCCCCccccCchhhchhhhhhh-ccCCCch-HHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCe
Q 039043 150 DNDLLRPPQGFPTSKIRLRAHEARGLAAATV-KEFGGGL-SFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPV 227 (449)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 227 (449)
..........+|+ +...+..+++..+. ......+ ....+.......++++++|++++|+++..+.+++.+ +++
T Consensus 166 ~~~~~~~~~~~pg----~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~-~~~ 240 (456)
T 2c1x_A 166 QGREDELLNFIPG----MSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL-KTY 240 (456)
T ss_dssp TTCTTCBCTTSTT----CTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHS-SCE
T ss_pred ccccccccccCCC----CCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcC-CCE
Confidence 0001111112333 11122222222111 0001111 333444455677899999999999998877777766 589
Q ss_pred EEeCccCCCCCCc--cchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCC
Q 039043 228 ILSGPALPESPRF--ALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESAL 305 (449)
Q Consensus 228 ~~vGp~~~~~~~~--~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l 305 (449)
++|||+....+.. +.+.++.+|++.++++++|||||||+...+.+++..++.+++.++.+|+|+++.. ....+
T Consensus 241 ~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~-----~~~~l 315 (456)
T 2c1x_A 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK-----ARVHL 315 (456)
T ss_dssp EECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGG-----GGGGS
T ss_pred EEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCc-----chhhC
Confidence 9999997543211 1234588999998889999999999998888999999999999999999999764 23457
Q ss_pred ChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeee
Q 039043 306 PEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEK 385 (449)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 385 (449)
|+++..+. .+|+.+.+|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++++.||+|+.++.
T Consensus 316 ~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~ 394 (456)
T 2c1x_A 316 PEGFLEKT-RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEG 394 (456)
T ss_dssp CTTHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGG
T ss_pred CHHHHhhc-CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecC
Confidence 88776654 35788889999999999999999999999999999999999999999999999999999998899999987
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHhcc
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSE----RLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~~~~~~~~~~~~~ 448 (449)
.+ ++.++|.++|+++|++ +.+++|++||+++++.+++. |++.+.+++|++.+.+.|
T Consensus 395 ~~----~~~~~l~~~i~~ll~~---~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~~~~ 454 (456)
T 2c1x_A 395 GV----FTKSGLMSCFDQILSQ---EKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSKPK 454 (456)
T ss_dssp GS----CCHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTSCC
T ss_pred CC----cCHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHhcC
Confidence 65 9999999999999998 33458999999999999753 667889999999987644
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=4e-55 Score=438.15 Aligned_cols=418 Identities=22% Similarity=0.298 Sum_probs=301.5
Q ss_pred CccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCcccc-----ccCCC-CCCCCCEEEEEecCCCCCCCCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAIT-----KFEPS-NLHRNLITFIPVSVPRVDGLPPGAETTNDV 72 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~-----~~~~~-g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~ 72 (449)
++|+|++||++|++.||+.|++| ||+|||++++.... .+++. ...++ ++|+.+|.. .++. .+....
T Consensus 14 ~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~-i~~~~lp~~---~~~~-~~~~~~- 87 (463)
T 2acv_A 14 FIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-IQLIDLPEV---EPPP-QELLKS- 87 (463)
T ss_dssp EECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTT-EEEEECCCC---CCCC-GGGGGS-
T ss_pred EEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCC-ceEEECCCC---CCCc-ccccCC-
Confidence 58999999999999999999999 99999999987531 12110 00122 999999822 1221 110011
Q ss_pred CCCcHHHHHHHHhhcHHHHHHHHhh---cCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccC
Q 039043 73 PFPLHPLLMTAMDLTEPAIESVLRH---LKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTL 148 (449)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ll~~---~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (449)
....+........+.+.+++++ .+||+||+|. +.|+..+|+++|||+++++++++.....+.+.+......+.
T Consensus 88 ---~~~~~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (463)
T 2acv_A 88 ---PEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVF 164 (463)
T ss_dssp ---HHHHHHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTTCCC
T ss_pred ---ccHHHHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhcccCCC
Confidence 1111334445566778888887 6899999999 89999999999999999999988776655544332110000
Q ss_pred CCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc--CCC
Q 039043 149 TDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF--GKP 226 (449)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~~ 226 (449)
...+.......+|+.. ......++...+... ...+..+.+....+..++.+++|++.+++++..+.+.... .++
T Consensus 165 ~~~~~~~~~~~~pg~~---~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~~ 240 (463)
T 2acv_A 165 DDSDRDHQLLNIPGIS---NQVPSNVLPDACFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP 240 (463)
T ss_dssp CCSSGGGCEECCTTCS---SCEEGGGSCHHHHCT-TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCC
T ss_pred CCccccCceeECCCCC---CCCChHHCchhhcCC-chHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCCc
Confidence 0000000011222210 111112222111101 1223333344455677888999999999998877766544 568
Q ss_pred eEEeCccCCCCC-C--c---cchhcccccccCCCCCeEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Q 039043 227 VILSGPALPESP-R--F---ALEERWETLLGSFKSKSLIFCAFGSEC-VLNKEQFQELVLGFELSGLPFLVALKPPVGHD 299 (449)
Q Consensus 227 ~~~vGp~~~~~~-~--~---~~~~~l~~~l~~~~~k~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 299 (449)
+++|||+..... . . ..+.++.+|++.++++++|||||||+. ..+.+++..++.+|+.++.+|||+++.+
T Consensus 241 v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~---- 316 (463)
T 2acv_A 241 IYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE---- 316 (463)
T ss_dssp EEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred EEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC----
Confidence 999999986542 1 1 245678999999888999999999999 7888999999999999999999999763
Q ss_pred ccccCCChhHHHhcC-CCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHH-Hhhh
Q 039043 300 TIESALPEGFEERVK-GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLM-GEEL 377 (449)
Q Consensus 300 ~~~~~lp~~~~~~~~-~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v-~~~~ 377 (449)
...+|+++..+.. .+++.+.+|+||.++|+|+++++||||||+||++||+++|||||++|++.||+.||+++ ++.
T Consensus 317 --~~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~- 393 (463)
T 2acv_A 317 --KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEW- 393 (463)
T ss_dssp --GGGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTS-
T ss_pred --cccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHc-
Confidence 1246777765431 24677778999999999999999999999999999999999999999999999999995 776
Q ss_pred cceeEe-e---ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHH
Q 039043 378 KVGVEV-E---KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRS----ERLENSYLDGFVQKLH 445 (449)
Q Consensus 378 G~G~~~-~---~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~~~~~~~~~~ 445 (449)
|+|+.+ + .. ++.++.++|.++|+++|++. ++||+||+++++.+++ +|++.+++++|++++.
T Consensus 394 g~g~~l~~~~~~~--~~~~~~~~l~~ai~~ll~~~-----~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~~~ 462 (463)
T 2acv_A 394 GVGLGLRVDYRKG--SDVVAAEEIEKGLKDLMDKD-----SIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462 (463)
T ss_dssp CCEEESCSSCCTT--CCCCCHHHHHHHHHHHTCTT-----CTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHH
T ss_pred CeEEEEecccCCC--CccccHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhc
Confidence 999999 3 22 01389999999999999731 7899999999999886 4668889999999885
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=1.8e-45 Score=365.93 Aligned_cols=395 Identities=21% Similarity=0.242 Sum_probs=275.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH--
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP-- 78 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~-- 78 (449)
|+++|+.||++|++.||++|+++||+|||++++.+.+.+++.| ++|+.++ ..++...............
T Consensus 17 ~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~g-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 87 (424)
T 2iya_A 17 FFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG-----ATPVVYD----SILPKESNPEESWPEDQESAM 87 (424)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT-----CEEEECC----CCSCCTTCTTCCCCSSHHHHH
T ss_pred EEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC-----CEEEecC----ccccccccchhhcchhHHHHH
Confidence 4789999999999999999999999999999999988888878 8898887 3333221110111112222
Q ss_pred -HHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCC-CC
Q 039043 79 -LLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDL-LR 155 (449)
Q Consensus 79 -~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (449)
.+........+.+.+++++.+||+||+|. .+++..+|+++|||+|.+++.+.........+...... ....+. ..
T Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 165 (424)
T 2iya_A 88 GLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDP--TADRGEEAA 165 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCC--CC-------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccc--ccccccccc
Confidence 22233344567788888889999999999 88899999999999999987664211110000000000 000000 00
Q ss_pred CCCCCCCCcccc---Cch--hhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEe
Q 039043 156 PPQGFPTSKIRL---RAH--EARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILS 230 (449)
Q Consensus 156 ~~~~~p~~~~~~---~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~v 230 (449)
++.......... ... ....+...+. ..+.. ... .......+.+++++.++++++. ..+++++++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~---~~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~~~v 235 (424)
T 2iya_A 166 APAGTGDAEEGAEAEDGLVRFFTRLSAFLE-EHGVD-TPA---TEFLIAPNRCIVALPRTFQIKG-----DTVGDNYTFV 235 (424)
T ss_dssp --------------HHHHHHHHHHHHHHHH-HTTCC-SCH---HHHHHCCSSEEESSCTTTSTTG-----GGCCTTEEEC
T ss_pred cccccccchhhhccchhHHHHHHHHHHHHH-HcCCC-CCH---HHhccCCCcEEEEcchhhCCCc-----cCCCCCEEEe
Confidence 000000000000 000 0011111111 10000 000 0111246778999998887642 3567789999
Q ss_pred CccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHH
Q 039043 231 GPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFE 310 (449)
Q Consensus 231 Gp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~ 310 (449)
||+..... +..+|++..+++++|||++||......+.+..++.+++..+.+++|.++.+...+ ....+|
T Consensus 236 Gp~~~~~~------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~-~~~~~~---- 304 (424)
T 2iya_A 236 GPTYGDRS------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPA-DLGEVP---- 304 (424)
T ss_dssp CCCCCCCG------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGG-GGCSCC----
T ss_pred CCCCCCcc------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChH-HhccCC----
Confidence 99764321 1346777666778999999999866678888999999888889999987653211 112233
Q ss_pred HhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 311 ERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 311 ~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
+|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|+.++..+
T Consensus 305 -----~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~~~~--- 373 (424)
T 2iya_A 305 -----PNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRHIPRDQ--- 373 (424)
T ss_dssp -----TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHT-TSEEECCGGG---
T ss_pred -----CCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHHHC-CCEEEcCcCC---
Confidence 48999999999999999999 999999999999999999999999999999999999998 9999998765
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
+++++|.++|+++|+| ++++++++++++.+++.++..++++.+++.+.
T Consensus 374 -~~~~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 374 -VTAEKLREAVLAVASD------PGVAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp -CCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8999999999999999 99999999999999988888888888877664
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=1.5e-44 Score=356.38 Aligned_cols=355 Identities=15% Similarity=0.115 Sum_probs=236.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCC----CCCCCCCCCCC--CC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDG----LPPGAETTNDV--PF 74 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~----l~~~~~~~~~~--~~ 74 (449)
|+++|+.||++|+++||++|++|||+|||++++.+.+..+ .| +.+..+.- ..+. .+......... ..
T Consensus 27 ~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (400)
T 4amg_A 27 FITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAE-AG-----LCAVDVSP-GVNYAKLFVPDDTDVTDPMHSEG 99 (400)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHT-TT-----CEEEESST-TCCSHHHHSCCC-----------
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHh-cC-----CeeEecCC-chhHhhhccccccccccccchhh
Confidence 5789999999999999999999999999999998877554 45 77777751 1010 01000000000 00
Q ss_pred Cc----HHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC
Q 039043 75 PL----HPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT 149 (449)
Q Consensus 75 ~~----~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (449)
.. ...+..........+.+++++++||+||+|. .+++..+|+.+|||++.+...+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~-------------- 165 (400)
T 4amg_A 100 LGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPG-------------- 165 (400)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHH--------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccc--------------
Confidence 11 1122223334556778888999999999999 9999999999999999765443221100
Q ss_pred CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCC-cEEEEcCccccccchHHHhhh--hcCCC
Q 039043 150 DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSEC-DAIGFKTCREIEGPYCDYIGS--QFGKP 226 (449)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~--~~~~~ 226 (449)
+..... ........+........ ...+..... ......+ ...+.
T Consensus 166 -------------------------~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 212 (400)
T 4amg_A 166 -------------------------LGALIR---RAMSKDYERHGVTGEPTGSVRLTTTPP-----SVEALLPEDRRSPG 212 (400)
T ss_dssp -------------------------HHHHHH---HHTHHHHHHTTCCCCCSCEEEEECCCH-----HHHHTSCGGGCCTT
T ss_pred -------------------------hhhHHH---HHHHHHHHHhCCCcccccchhhcccCc-----hhhccCcccccCCc
Confidence 000000 00001111111111111 111211111 1111100 01122
Q ss_pred eEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCC--HHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccC
Q 039043 227 VILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLN--KEQFQELVLGFELSGLPFLVALKPPVGHDTIESA 304 (449)
Q Consensus 227 ~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 304 (449)
...+++.... .+..+.+|++..+++++|||||||+...+ .+.+..++.+++..+.+++|..+..... ....
T Consensus 213 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~--~~~~ 285 (400)
T 4amg_A 213 AWPMRYVPYN-----GGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLA--LLGE 285 (400)
T ss_dssp CEECCCCCCC-----CCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCC--CCCC
T ss_pred ccCccccccc-----ccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcccc--cccc
Confidence 3333333222 22345568888888999999999987644 3678889999999999999998775332 2344
Q ss_pred CChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 305 LPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 305 lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
+|+ |+.+.+|+||.++|+|+++ ||||||+||++||+++|||+|++|++.||+.||.++++. |+|+.++
T Consensus 286 ~~~---------~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~-G~g~~l~ 353 (400)
T 4amg_A 286 LPA---------NVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGL-GIGFDAE 353 (400)
T ss_dssp CCT---------TEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHH-TSEEECC
T ss_pred CCC---------CEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHC-CCEEEcC
Confidence 554 8999999999999999999 999999999999999999999999999999999999998 9999998
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQ 442 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 442 (449)
..+ ++. ++|+++|+| ++||++|+++++++++.++..++++.|++
T Consensus 354 ~~~----~~~----~al~~lL~d------~~~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 354 AGS----LGA----EQCRRLLDD------AGLREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp TTT----CSH----HHHHHHHHC------HHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCC----chH----HHHHHHHcC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 775 665 467789999 99999999999999999988777766654
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=8.1e-42 Score=338.64 Aligned_cols=377 Identities=12% Similarity=0.058 Sum_probs=254.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|+++|+.||++|+++||++|++|||+|||++++.+.+.+.+.| ++|+.++.. .......... .....+
T Consensus 5 ~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g-----~~~~~i~~~----~~~~~~~~~~---~~~~~~ 72 (415)
T 1iir_A 5 LATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVG-----VPHVPVGPS----ARAPIQRAKP---LTAEDV 72 (415)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CCEEECCC-----------CCSC---CCHHHH
T ss_pred EEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHcC-----CeeeeCCCC----HHHHhhcccc---cchHHH
Confidence 4688999999999999999999999999999999888777777 889998832 1110011000 111112
Q ss_pred HHHHhhc-HHHHHHHHh-hcCCCEEEEcC--CCC--hHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCC
Q 039043 81 MTAMDLT-EPAIESVLR-HLKPDFVFFDF--THW--LPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLL 154 (449)
Q Consensus 81 ~~~~~~~-~~~~~~ll~-~~~pD~vI~D~--~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (449)
....... ...+.++.+ ..+||+||+|. +.+ +..+|+++|||+|.+.+++......+. +.. ..+
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-p~~--------~~~-- 141 (415)
T 1iir_A 73 RRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYY-PPP--------PLG-- 141 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSS-CCC--------C----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCccc-CCc--------cCC--
Confidence 2222111 223444443 56899999996 667 889999999999999877643211000 000 000
Q ss_pred CCCCCCCCCccccCchh---hch---------hhhhhhccCCCchHHHHHHhhhccCCcEEEEcCcccccc-chHHHhhh
Q 039043 155 RPPQGFPTSKIRLRAHE---ARG---------LAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEG-PYCDYIGS 221 (449)
Q Consensus 155 ~~~~~~p~~~~~~~~~~---~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~-~~~~~~~~ 221 (449)
..+|.. ...+... ... +..... .. ++.....+.+..... ..++++++++++ + ..
T Consensus 142 ---~~~~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~-----~~ 208 (415)
T 1iir_A 142 ---EPSTQD-TIDIPAQWERNNQSAYQRYGGLLNSHRD-AI--GLPPVEDIFTFGYTD-HPWVAADPVLAPLQ-----PT 208 (415)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HT--TCCCCCCHHHHHHCS-SCEECSCTTTSCCC-----CC
T ss_pred ---ccccch-HHHHHHHHHHHHHHHHHHhHHHHHHHHH-Hc--CCCCCCccccccCCC-CEEEeeChhhcCCC-----cc
Confidence 001100 0000000 000 000000 00 000000000111223 678999888876 3 12
Q ss_pred hcCCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcc
Q 039043 222 QFGKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTI 301 (449)
Q Consensus 222 ~~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 301 (449)
.+ ++++|||+..... .+.+.++.+|++.+ +++|||++||+. ...+.+..++.+++..+.+++|+++.....
T Consensus 209 ~~--~~~~vG~~~~~~~-~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~~--- 279 (415)
T 1iir_A 209 DL--DAVQTGAWILPDE-RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADLV--- 279 (415)
T ss_dssp SS--CCEECCCCCCCCC-CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC---
T ss_pred cC--CeEeeCCCccCcc-cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCccc---
Confidence 23 6899999976533 23566788999764 469999999997 567788889999999999999998765321
Q ss_pred ccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 302 ESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 302 ~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
...+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|+
T Consensus 280 ~~~~~---------~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~ 347 (415)
T 1iir_A 280 LPDDG---------ADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAEL-GVGV 347 (415)
T ss_dssp CSSCG---------GGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-TSEE
T ss_pred ccCCC---------CCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHC-CCcc
Confidence 12233 48999999999999988888 999999999999999999999999999999999999998 9999
Q ss_pred EeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 382 EVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
.++..+ ++.++|.++|+++ +| ++++++++++++.+...++..++++.+.+.++
T Consensus 348 ~~~~~~----~~~~~l~~~i~~l-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 348 AHDGPI----PTFDSLSAALATA-LT------PETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp ECSSSS----CCHHHHHHHHHHH-TS------HHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred cCCcCC----CCHHHHHHHHHHH-cC------HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHh
Confidence 998765 8999999999999 88 99999999999999876666666666655443
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=3.8e-42 Score=341.11 Aligned_cols=375 Identities=14% Similarity=0.047 Sum_probs=256.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|++.++.||++|+++||++|+++||+|+|++++.+.+.+++.| ++|+.++....+.+.. . ........+
T Consensus 5 ~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g-----~~~~~~~~~~~~~~~~-~-----~~~~~~~~~ 73 (416)
T 1rrv_A 5 LSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVG-----VPHVPVGLPQHMMLQE-G-----MPPPPPEEE 73 (416)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT-----CCEEECSCCGGGCCCT-T-----SCCCCHHHH
T ss_pred EEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC-----CeeeecCCCHHHHHhh-c-----cccchhHHH
Confidence 4688999999999999999999999999999999888888778 8899988321011110 0 001111112
Q ss_pred HHHHhhcHHHHHHHHh--hcCCCEEEEcC--CCC--hHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLR--HLKPDFVFFDF--THW--LPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLL 154 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~--~~~pD~vI~D~--~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (449)
..........+.+.++ ..+||+||+|. +++ +..+|+.+|||++.+.+++.+....+. ++. . +.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~-p~~-------~--~~- 142 (416)
T 1rrv_A 74 QRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHL-PPA-------Y--DE- 142 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSS-CCC-------B--CS-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCccc-CCC-------C--CC-
Confidence 2222112122333333 56899999995 666 889999999999988776643210000 000 0 00
Q ss_pred CCCCCC-CCCccccCchh---hc---------hhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhh
Q 039043 155 RPPQGF-PTSKIRLRAHE---AR---------GLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGS 221 (449)
Q Consensus 155 ~~~~~~-p~~~~~~~~~~---~~---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 221 (449)
.+ ++. ..+... .. .+..... .. ++.......+..... .+++++.++++++. .
T Consensus 143 ----~~~~~r--~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~--g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~-----~ 207 (416)
T 1rrv_A 143 ----PTTPGV--TDIRVLWEERAARFADRYGPTLNRRRA-EI--GLPPVEDVFGYGHGE-RPLLAADPVLAPLQ-----P 207 (416)
T ss_dssp ----CCCTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHH-HT--TCCCCSCHHHHTTCS-SCEECSCTTTSCCC-----S
T ss_pred ----CCCchH--HHHHHHHHHHHHHHHHHhHHHHHHHHH-Hc--CCCCCCchhhhccCC-CeEEccCccccCCC-----C
Confidence 00 100 000000 00 0000000 00 000000001112333 68899988887642 2
Q ss_pred hcCCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc
Q 039043 222 QFGKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDT 300 (449)
Q Consensus 222 ~~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 300 (449)
.+ +++++||+..+.. .+.+.++.+|++.+ +++|||++||+.. ...+.+..++++++..+.+++|+++.....
T Consensus 208 ~~--~~~~vG~~~~~~~-~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~-- 280 (416)
T 1rrv_A 208 DV--DAVQTGAWLLSDE-RPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELV-- 280 (416)
T ss_dssp SC--CCEECCCCCCCCC-CCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCC--
T ss_pred CC--CeeeECCCccCcc-CCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCcccc--
Confidence 23 6899999976532 23466788898765 4699999999964 345677889999999999999998875321
Q ss_pred cccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcce
Q 039043 301 IESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVG 380 (449)
Q Consensus 301 ~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 380 (449)
...+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|
T Consensus 281 -~~~~~---------~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g 347 (416)
T 1rrv_A 281 -LPDDR---------DDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAAL-GIG 347 (416)
T ss_dssp -CSCCC---------TTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHH-TSE
T ss_pred -ccCCC---------CCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHC-CCc
Confidence 12233 48999999999999999998 999999999999999999999999999999999999998 999
Q ss_pred eEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+.++..+ +++++|.++|+++ +| ++++++++++++.+.+.++. ++++.+++.+
T Consensus 348 ~~~~~~~----~~~~~l~~~i~~l-~~------~~~~~~~~~~~~~~~~~~~~-~~~~~i~e~~ 399 (416)
T 1rrv_A 348 VAHDGPT----PTFESLSAALTTV-LA------PETRARAEAVAGMVLTDGAA-AAADLVLAAV 399 (416)
T ss_dssp EECSSSC----CCHHHHHHHHHHH-TS------HHHHHHHHHHTTTCCCCHHH-HHHHHHHHHH
T ss_pred cCCCCCC----CCHHHHHHHHHHh-hC------HHHHHHHHHHHHHHhhcCcH-HHHHHHHHHH
Confidence 9998765 8999999999999 88 99999999999999877777 7777762443
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=1e-40 Score=330.72 Aligned_cols=384 Identities=18% Similarity=0.159 Sum_probs=270.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCC---CCCCCCCCcH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAE---TTNDVPFPLH 77 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~---~~~~~~~~~~ 77 (449)
|+++++.||++|+++||++|+++||+|+|++++.+.+.+++.| +.+..++. .++.... ..........
T Consensus 25 ~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 95 (415)
T 3rsc_A 25 IVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAG-----ATVVPYQS----EIIDADAAEVFGSDDLGVRP 95 (415)
T ss_dssp EECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CEEEECCC----STTTCCHHHHHHSSSSCHHH
T ss_pred EEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcC-----CEEEeccc----cccccccchhhccccHHHHH
Confidence 4688999999999999999999999999999999999998888 89998872 2221100 0000000111
Q ss_pred HH-HHHHHhhcHHHHHHHHhhcCCCEEEEc-C-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCC
Q 039043 78 PL-LMTAMDLTEPAIESVLRHLKPDFVFFD-F-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLL 154 (449)
Q Consensus 78 ~~-~~~~~~~~~~~~~~ll~~~~pD~vI~D-~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (449)
.. +..........+.+++++++||+||+| + .+++..+|+++|||++.+.+.......+.. .+......
T Consensus 96 ~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~-~~~~~~~~-------- 166 (415)
T 3rsc_A 96 HLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSF-SQDMVTLA-------- 166 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCH-HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccc-cccccccc--------
Confidence 11 223333456778889999999999999 6 788899999999999988754431100000 00000000
Q ss_pred CCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccC
Q 039043 155 RPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPAL 234 (449)
Q Consensus 155 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 234 (449)
....|. ........+...+. ....... ...+. ....+..+....+++++ ....++.++.++||+.
T Consensus 167 --~~~~p~----~~~~~~~~~~~~~~-~~g~~~~-~~~~~--~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~vGp~~ 231 (415)
T 3rsc_A 167 --GTIDPL----DLPVFRDTLRDLLA-EHGLSRS-VVDCW--NHVEQLNLVFVPKAFQI-----AGDTFDDRFVFVGPCF 231 (415)
T ss_dssp --TCCCGG----GCHHHHHHHHHHHH-HTTCCCC-HHHHH--TCCCSEEEESSCTTTST-----TGGGCCTTEEECCCCC
T ss_pred --ccCChh----hHHHHHHHHHHHHH-HcCCCCC-hhhhh--cCCCCeEEEEcCcccCC-----CcccCCCceEEeCCCC
Confidence 000000 00000011111111 1110000 01111 11125666666555543 3455677899999987
Q ss_pred CCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcC
Q 039043 235 PESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVK 314 (449)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 314 (449)
... .+..+|....+++++|||++||......+.+..++.+++..+.+++|.++.+...+ ....++
T Consensus 232 ~~~------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~-~l~~~~-------- 296 (415)
T 3rsc_A 232 DDR------RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPA-ALGDLP-------- 296 (415)
T ss_dssp CCC------GGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGG-GGCCCC--------
T ss_pred CCc------ccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChH-HhcCCC--------
Confidence 542 12345665556788999999999877778888999999988888999887653211 122333
Q ss_pred CCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccH
Q 039043 315 GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTR 394 (449)
Q Consensus 315 ~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~ 394 (449)
+|+.+.+|+|+.++|+++++ ||||||+||++||+++|+|+|++|...||+.||.++++. |+|..+...+ +++
T Consensus 297 -~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~-g~g~~~~~~~----~~~ 368 (415)
T 3rsc_A 297 -PNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQL-GLGAVLPGEK----ADG 368 (415)
T ss_dssp -TTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHH-TCEEECCGGG----CCH
T ss_pred -CcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHc-CCEEEcccCC----CCH
Confidence 48999999999999999999 999999999999999999999999999999999999999 9999998876 899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+.|.++|+++|+| ++++++++++++.+.+.++..++++.+.+.+..
T Consensus 369 ~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 369 DTLLAAVGAVAAD------PALLARVEAMRGHVRRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHTC------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence 9999999999999 999999999999999999999999888887654
No 11
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=5.4e-40 Score=323.92 Aligned_cols=384 Identities=16% Similarity=0.160 Sum_probs=268.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH-
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL- 79 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~- 79 (449)
|+++++.||++|++.||++|+++||+|+|++++.+.+.+++.| +++..++. .++................
T Consensus 9 ~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (402)
T 3ia7_A 9 FANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAG-----AEVVLYKS----EFDTFHVPEVVKQEDAETQL 79 (402)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTT-----CEEEECCC----GGGTSSSSSSSCCTTHHHHH
T ss_pred EEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcC-----CEEEeccc----ccccccccccccccchHHHH
Confidence 4678999999999999999999999999999999988888888 89998872 2211111000111112222
Q ss_pred ---HHHHHhhcHHHHHHHHhhcCCCEEEEc-C-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCC
Q 039043 80 ---LMTAMDLTEPAIESVLRHLKPDFVFFD-F-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLL 154 (449)
Q Consensus 80 ---~~~~~~~~~~~~~~ll~~~~pD~vI~D-~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (449)
+..........+.+++++++||+||+| + .+++..+|+.+|||+|.+.+.......+.. .+.......
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~-~~~~~~~~~------- 151 (402)
T 3ia7_A 80 HLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSL-FKELWKSNG------- 151 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCH-HHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccc-ccccccccc-------
Confidence 222233455778888999999999999 6 778899999999999988654332100000 000000000
Q ss_pred CCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccC
Q 039043 155 RPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPAL 234 (449)
Q Consensus 155 ~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 234 (449)
...|. .. ......+...+. ....... ...+.. ...+..+.....++++ ....++.++.++||+.
T Consensus 152 ---~~~~~---~~-~~~~~~~~~~~~-~~g~~~~-~~~~~~--~~~~~~l~~~~~~~~~-----~~~~~~~~~~~vGp~~ 215 (402)
T 3ia7_A 152 ---QRHPA---DV-EAVHSVLVDLLG-KYGVDTP-VKEYWD--EIEGLTIVFLPKSFQP-----FAETFDERFAFVGPTL 215 (402)
T ss_dssp ---CCCGG---GS-HHHHHHHHHHHH-TTTCCSC-HHHHHT--CCCSCEEESSCGGGST-----TGGGCCTTEEECCCCC
T ss_pred ---ccChh---hH-HHHHHHHHHHHH-HcCCCCC-hhhhhc--CCCCeEEEEcChHhCC-----ccccCCCCeEEeCCCC
Confidence 00000 00 000011111111 1111000 011111 1125556655554443 3445677899999986
Q ss_pred CCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcC
Q 039043 235 PESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVK 314 (449)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 314 (449)
.... +...|....+++++|||++||......+.+..++.+++..+.+++|.++.+...+ ....++
T Consensus 216 ~~~~------~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~-------- 280 (402)
T 3ia7_A 216 TGRD------GQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPA-VLGPLP-------- 280 (402)
T ss_dssp CC----------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGG-GGCSCC--------
T ss_pred CCcc------cCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChh-hhCCCC--------
Confidence 5431 2344665556778999999999887778889999999988888898887643211 122333
Q ss_pred CCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEecccc-ccchhhHHHHHHhhhcceeEeeecCCCCccc
Q 039043 315 GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN-VGDQIINARLMGEELKVGVEVEKGDEDGLFT 393 (449)
Q Consensus 315 ~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 393 (449)
+|+.+.+|+|+.++|+++++ +|||||+||+.||+++|+|+|++|. ..||+.||.++++. |+|..+...+ ++
T Consensus 281 -~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~-g~g~~~~~~~----~~ 352 (402)
T 3ia7_A 281 -PNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIEL-GLGSVLRPDQ----LE 352 (402)
T ss_dssp -TTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHT-TSEEECCGGG----CS
T ss_pred -CcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHc-CCEEEccCCC----CC
Confidence 48999999999999999999 9999999999999999999999999 99999999999999 9999998876 89
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 394 RDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 394 ~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++.|.++|.++|+| ++++++++++++.+.+.++..++++.+.+.+.+
T Consensus 353 ~~~l~~~~~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 353 PASIREAVERLAAD------SAVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHHHHC------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC------HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 99999999999999 999999999999999888888999888887764
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.3e-40 Score=328.69 Aligned_cols=373 Identities=14% Similarity=0.101 Sum_probs=258.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|++.++.||++|+++||++|++|||+|+|++++.+.+.+++.| +.|..++.. .+.+. ...... .......+
T Consensus 5 i~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~g-----~~~~~l~~~-~~~~~--~~~~~~-~~~~~~~~ 75 (404)
T 3h4t_A 5 ITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVG-----VPMVPVGRA-VRAGA--REPGEL-PPGAAEVV 75 (404)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTT-----CCEEECSSC-SSGGG--SCTTCC-CTTCGGGH
T ss_pred EEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC-----CceeecCCC-HHHHh--ccccCC-HHHHHHHH
Confidence 4578999999999999999999999999999999999998888 889988721 11110 000000 11222333
Q ss_pred HHHHhhcHHHHHHHHhhcCCCEEEEcC-CCCh---HHHHHHhCCceEEEecchHHHHHhhcch-hhhhccccCCCCCCCC
Q 039043 81 MTAMDLTEPAIESVLRHLKPDFVFFDF-THWL---PPLARKFGIKSVLYCIISPATIGYLLSP-ERKLRERTLTDNDLLR 155 (449)
Q Consensus 81 ~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (449)
..........+.++++ +||+||+|. ...+ ..+|+.+|||++.+..++....+.+.+. +..
T Consensus 76 ~~~~~~~~~~l~~~~~--~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~------------- 140 (404)
T 3h4t_A 76 TEVVAEWFDKVPAAIE--GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDM------------- 140 (404)
T ss_dssp HHHHHHHHHHHHHHHT--TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHhc--CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHH-------------
Confidence 3444444455555554 799999985 4333 7899999999998877664211100000 000
Q ss_pred CCCCCCCCccccCchhhchhhhhhhccCC--CchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCcc
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVKEFG--GGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPA 233 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~ 233 (449)
............+.+... ... ..-...... ..+..+.+..+.+.+. +.+++++.++|++
T Consensus 141 -------~~~~~~~~~~~~~~~~~~-~lgl~~~~~~~~~~-----~~~~~l~~~~~~l~p~------~~~~~~~~~~G~~ 201 (404)
T 3h4t_A 141 -------YNQGADRLFGDAVNSHRA-SIGLPPVEHLYDYG-----YTDQPWLAADPVLSPL------RPTDLGTVQTGAW 201 (404)
T ss_dssp -------HHHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHH-----HCSSCEECSCTTTSCC------CTTCCSCCBCCCC
T ss_pred -------HHHHHHHHhHHHHHHHHH-HcCCCCCcchhhcc-----ccCCeEEeeCcceeCC------CCCCCCeEEeCcc
Confidence 000000000000000000 000 000000000 0122344555555442 2356688999987
Q ss_pred CCCCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc
Q 039043 234 LPESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV 313 (449)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~ 313 (449)
..+. ...+++++.+|++. ++++|||++||+.. ..+.+..++++++..+.+++|+++..... ....+
T Consensus 202 ~~~~-~~~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~~~---~~~~~------- 267 (404)
T 3h4t_A 202 ILPD-QRPLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAGLG---RIDEG------- 267 (404)
T ss_dssp CCCC-CCCCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTTCC---CSSCC-------
T ss_pred ccCC-CCCCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcccc---cccCC-------
Confidence 6553 23467778888875 35699999999987 66778889999999999999998865321 11222
Q ss_pred CCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCccc
Q 039043 314 KGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFT 393 (449)
Q Consensus 314 ~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 393 (449)
+|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||.++++. |+|..+...+ ++
T Consensus 268 --~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~-G~g~~l~~~~----~~ 338 (404)
T 3h4t_A 268 --DDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADL-GVGVAHDGPT----PT 338 (404)
T ss_dssp --TTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-TSEEECSSSS----CC
T ss_pred --CCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHC-CCEeccCcCC----CC
Confidence 48999999999999999999 999999999999999999999999999999999999999 9999998776 89
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 394 RDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 394 ~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
++.|.++|+++++ ++|+++++++++.+.+ .+..++++.+++.+.+.
T Consensus 339 ~~~l~~ai~~ll~-------~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 384 (404)
T 3h4t_A 339 VESLSAALATALT-------PGIRARAAAVAGTIRT-DGTTVAAKLLLEAISRQ 384 (404)
T ss_dssp HHHHHHHHHHHTS-------HHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhC-------HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhC
Confidence 9999999999996 5899999999999998 88888888888777643
No 13
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=5.4e-39 Score=320.85 Aligned_cols=381 Identities=16% Similarity=0.110 Sum_probs=248.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCC-CCCCCCCC-CC------CCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRV-DGLPPGAE-TT------NDV 72 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~-~~l~~~~~-~~------~~~ 72 (449)
|++.|+.||++|+++||++|+++||+|+|++++.+.+.+++.| ++|+.++.... +++..... .. .+.
T Consensus 25 ~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~G-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (441)
T 2yjn_A 25 FSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAG-----LTAVPVGTDVDLVDFMTHAGHDIIDYVRSLDF 99 (441)
T ss_dssp EECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTTT-----CCEEECSCCCCHHHHHHHTTHHHHHHHTTCCC
T ss_pred EEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhCC-----CceeecCCccchHHHhhhhhcccccccccccc
Confidence 4678999999999999999999999999999999888888888 88999872110 00000000 00 000
Q ss_pred ----CC-CcHHH-------HHHHHh-----h-cHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHH
Q 039043 73 ----PF-PLHPL-------LMTAMD-----L-TEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATI 133 (449)
Q Consensus 73 ----~~-~~~~~-------~~~~~~-----~-~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~ 133 (449)
.. ..... +..... . ....+.+++++++||+||+|. .+++..+|+.+|||+|.+...+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~~~~~~ 179 (441)
T 2yjn_A 100 SERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWGPDITT 179 (441)
T ss_dssp TTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSSCCHHH
T ss_pred cccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecCCCcch
Confidence 00 00111 111111 1 456677778889999999999 88899999999999999865442211
Q ss_pred HhhcchhhhhccccCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCC-chHHHHHHhhhccCCcEEEEcCccccc
Q 039043 134 GYLLSPERKLRERTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGG-GLSFAKRNLLSLSECDAIGFKTCREIE 212 (449)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~s~~~l~ 212 (449)
.......... ...|... ......+.+.+... .... .+. ......+..+....+.++
T Consensus 180 ~~~~~~~~~~--------------~~~~~~~--~~~~~~~~l~~~~~-~~g~~~~~------~~~~~~~~~l~~~~~~~~ 236 (441)
T 2yjn_A 180 RARQNFLGLL--------------PDQPEEH--REDPLAEWLTWTLE-KYGGPAFD------EEVVVGQWTIDPAPAAIR 236 (441)
T ss_dssp HHHHHHHHHG--------------GGSCTTT--CCCHHHHHHHHHHH-HTTCCCCC------GGGTSCSSEEECSCGGGS
T ss_pred hhhhhhhhhc--------------ccccccc--ccchHHHHHHHHHH-HcCCCCCC------ccccCCCeEEEecCcccc
Confidence 1100000000 0000000 00000011111111 0000 000 001123445554444343
Q ss_pred cchHHHhhhhcCCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccC---CHHHHHHHHHHHHhCCCCEE
Q 039043 213 GPYCDYIGSQFGKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVL---NKEQFQELVLGFELSGLPFL 289 (449)
Q Consensus 213 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~---~~~~~~~~~~al~~~~~~~i 289 (449)
++ ..++. ..+++.... .+.++.+|++..+++++|||++||+... ..+.+..++++++..+.+++
T Consensus 237 ~~------~~~~~--~~~~~~~~~-----~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v 303 (441)
T 2yjn_A 237 LD------TGLKT--VGMRYVDYN-----GPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEII 303 (441)
T ss_dssp CC------CCCCE--EECCCCCCC-----SSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEE
T ss_pred CC------CCCCC--CceeeeCCC-----CCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEE
Confidence 31 11210 223333211 1234667888767788999999999864 23567778899988899999
Q ss_pred EEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhH
Q 039043 290 VALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIIN 369 (449)
Q Consensus 290 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~n 369 (449)
|+.+..... ....+| +|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.|
T Consensus 304 ~~~g~~~~~--~l~~~~---------~~v~~~~~~~~~~ll~~ad~--~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~n 370 (441)
T 2yjn_A 304 ATFDAQQLE--GVANIP---------DNVRTVGFVPMHALLPTCAA--TVHHGGPGSWHTAAIHGVPQVILPDGWDTGVR 370 (441)
T ss_dssp ECCCTTTTS--SCSSCC---------SSEEECCSCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHH
T ss_pred EEECCcchh--hhccCC---------CCEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCcccHHHH
Confidence 998754211 111233 48999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 370 ARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 370 a~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
|.++++. |+|+.++..+ ++++.|.++|+++|+| ++++++++++++.+.+.++..++++.+.+.+.+
T Consensus 371 a~~l~~~-g~g~~~~~~~----~~~~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 371 AQRTQEF-GAGIALPVPE----LTPDQLRESVKRVLDD------PAHRAGAARMRDDMLAEPSPAEVVGICEELAAG 436 (441)
T ss_dssp HHHHHHH-TSEEECCTTT----CCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHc-CCEEEccccc----CCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999998 9999998776 8999999999999999 999999999999999988888888888777654
No 14
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=2.1e-38 Score=315.54 Aligned_cols=382 Identities=19% Similarity=0.218 Sum_probs=259.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLL 80 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (449)
|++.++.||++|++.||++|+++||+|++++++.+.+.+.+.| ++++.+| ..++................+
T Consensus 12 ~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 82 (430)
T 2iyf_A 12 MFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATG-----PRPVLYH----STLPGPDADPEAWGSTLLDNV 82 (430)
T ss_dssp EECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTS-----CEEEECC----CCSCCTTSCGGGGCSSHHHHH
T ss_pred EEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC-----CEEEEcC----CcCccccccccccchhhHHHH
Confidence 3678899999999999999999999999999998877777777 8888887 222211111000011112222
Q ss_pred ---HHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCC
Q 039043 81 ---MTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRP 156 (449)
Q Consensus 81 ---~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (449)
..........+.+++++.+||+||+|. .+++..+|+.+|||+|.+.+.+.....+...+.......
T Consensus 83 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~---------- 152 (430)
T 2iyf_A 83 EPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWRE---------- 152 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhh----------
Confidence 222334567788899999999999998 778899999999999988765431100000000000000
Q ss_pred CCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCC-eEEeCccCC
Q 039043 157 PQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKP-VILSGPALP 235 (449)
Q Consensus 157 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~-~~~vGp~~~ 235 (449)
...++. ... ....+...+. ..... ... .......+.+++++..++++.. ..++++ ++++||...
T Consensus 153 ~~~~~~----~~~-~~~~~~~~~~-~~g~~-~~~---~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~v~~vG~~~~ 217 (430)
T 2iyf_A 153 PRQTER----GRA-YYARFEAWLK-ENGIT-EHP---DTFASHPPRSLVLIPKALQPHA-----DRVDEDVYTFVGACQG 217 (430)
T ss_dssp HHHSHH----HHH-HHHHHHHHHH-HTTCC-SCH---HHHHHCCSSEEECSCGGGSTTG-----GGSCTTTEEECCCCC-
T ss_pred hccchH----HHH-HHHHHHHHHH-HhCCC-CCH---HHHhcCCCcEEEeCcHHhCCCc-----ccCCCccEEEeCCcCC
Confidence 000000 000 0000111111 00000 000 0111245778888887776531 345667 999998654
Q ss_pred CCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHhcC
Q 039043 236 ESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEERVK 314 (449)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~ 314 (449)
... +..+|.+..+++++|||++||......+.+..++.+++.. +.+++|.++.+...+ ....++
T Consensus 218 ~~~------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~-~l~~~~-------- 282 (430)
T 2iyf_A 218 DRA------EEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPA-ELGELP-------- 282 (430)
T ss_dssp ----------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGG-GGCSCC--------
T ss_pred CCC------CCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChH-HhccCC--------
Confidence 321 1234665555678999999999855667888899999875 778888887653211 112233
Q ss_pred CCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccH
Q 039043 315 GRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTR 394 (449)
Q Consensus 315 ~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~ 394 (449)
+|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..||.++++. |+|+.+...+ +++
T Consensus 283 -~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~-g~g~~~~~~~----~~~ 354 (430)
T 2iyf_A 283 -DNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL-GVARKLATEE----ATA 354 (430)
T ss_dssp -TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHT-TSEEECCCC-----CCH
T ss_pred -CCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHHc-CCEEEcCCCC----CCH
Confidence 48999999999999999999 999999999999999999999999999999999999998 9999998765 899
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++|.++|.++++| +++++++.++++.+.+.++..++++.+++.++
T Consensus 355 ~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 355 DLLRETALALVDD------PEVARRLRRIQAEMAQEGGTRRAADLIEAELP 399 (430)
T ss_dssp HHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcC------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhh
Confidence 9999999999999 99999999999999877777777777765543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=4.4e-38 Score=308.57 Aligned_cols=361 Identities=11% Similarity=0.083 Sum_probs=254.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCC-CCCCCCCC-CC-CC-Cc
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGL-PPGAETTN-DV-PF-PL 76 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l-~~~~~~~~-~~-~~-~~ 76 (449)
|++.++.||++|+++||++|+++||+|++++++.+.+.++..| +++..++....... ........ .. .. ..
T Consensus 5 ~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (384)
T 2p6p_A 5 FVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVG-----LPAVATTDLPIRHFITTDREGRPEAIPSDPVA 79 (384)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CCEEESCSSCHHHHHHBCTTSCBCCCCCSHHH
T ss_pred EEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCC-----CEEEEeCCcchHHHHhhhcccCccccCcchHH
Confidence 4578899999999999999999999999999998877777777 88888872110000 00000000 00 00 11
Q ss_pred HHHH-----HHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCC
Q 039043 77 HPLL-----MTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTD 150 (449)
Q Consensus 77 ~~~~-----~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (449)
...+ ..........+.+++++.+||+||+|. ..++..+|+.+|||+|.+...+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~------------------- 140 (384)
T 2p6p_A 80 QARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD------------------- 140 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-------------------
Confidence 1111 111223456777888889999999998 888899999999999987532210
Q ss_pred CCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHh-hhccCCcEEEEcCccccccchHHHhhhhcC-CCeE
Q 039043 151 NDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNL-LSLSECDAIGFKTCREIEGPYCDYIGSQFG-KPVI 228 (449)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~-~~~~ 228 (449)
... +. ..+..... +...++. .....++.+++++.+.++++. .++ .++.
T Consensus 141 ------~~~-------~~----~~~~~~~~-------~~~~~~g~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~ 190 (384)
T 2p6p_A 141 ------ADG-------IH----PGADAELR-------PELSELGLERLPAPDLFIDICPPSLRPAN------AAPARMMR 190 (384)
T ss_dssp ------CTT-------TH----HHHHHHTH-------HHHHHTTCSSCCCCSEEEECSCGGGSCTT------SCCCEECC
T ss_pred ------cch-------hh----HHHHHHHH-------HHHHHcCCCCCCCCCeEEEECCHHHCCCC------CCCCCceE
Confidence 000 00 00000000 0111110 011125678888887776531 121 1233
Q ss_pred EeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccC-----CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcccc
Q 039043 229 LSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVL-----NKEQFQELVLGFELSGLPFLVALKPPVGHDTIES 303 (449)
Q Consensus 229 ~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~-----~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 303 (449)
+++ .. .+.++.+|++..+++++|||++||+... ..+.+..++.+++..+.+++|+++.. ..
T Consensus 191 ~~~---~~-----~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~-----~~- 256 (384)
T 2p6p_A 191 HVA---TS-----RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDT-----VA- 256 (384)
T ss_dssp CCC---CC-----CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEECCHH-----HH-
T ss_pred ecC---CC-----CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEeCCC-----CH-
Confidence 332 11 1234567887655678999999999864 45778889999998899999987642 00
Q ss_pred CCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 304 ALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 304 ~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
+.+. . .++|+.+ +|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||.++++. |+|+.+
T Consensus 257 ---~~l~-~-~~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~-g~g~~~ 327 (384)
T 2p6p_A 257 ---EALR-A-EVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADY-GAAIAL 327 (384)
T ss_dssp ---HHHH-H-HCTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEEC
T ss_pred ---HhhC-C-CCCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHC-CCeEec
Confidence 1111 1 1358889 99999999999999 999999999999999999999999999999999999998 999999
Q ss_pred eecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
+..+ +++++|.++|+++|+| ++++++++++++.+++.++.+++++.|.+.+..++
T Consensus 328 ~~~~----~~~~~l~~~i~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 382 (384)
T 2p6p_A 328 LPGE----DSTEAIADSCQELQAK------DTYARRAQDLSREISGMPLPATVVTALEQLAHHHH 382 (384)
T ss_dssp CTTC----CCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHC
T ss_pred CcCC----CCHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhcc
Confidence 8765 8999999999999999 99999999999999999999999999988887654
No 16
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=7.5e-36 Score=294.16 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=246.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCC-------C------
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGA-------E------ 67 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~-------~------ 67 (449)
|++.++.||++|++.||++|+++||+|+++++ .+.+.+...| +.+..++... .+.... .
T Consensus 25 ~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 96 (398)
T 3oti_A 25 FVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAG-----LEVVDVAPDY--SAVKVFEQVAKDNPRFAETV 96 (398)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTT-----CEEEESSTTC--CHHHHHHHHHHHCHHHHHTG
T ss_pred EEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCC-----CeeEecCCcc--CHHHHhhhcccCCccccccc
Confidence 46778999999999999999999999999999 8888888888 8898887210 000000 0
Q ss_pred --CCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhc
Q 039043 68 --TTNDVPFPLHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLR 144 (449)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 144 (449)
............+..........+.+++++++||+||+|. ++++..+|+.+|||+|.........
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~------------ 164 (398)
T 3oti_A 97 ATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT------------ 164 (398)
T ss_dssp GGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC------------
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc------------
Confidence 0001111233344455556778899999999999999998 8889999999999999765332100
Q ss_pred cccCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcC
Q 039043 145 ERTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFG 224 (449)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~ 224 (449)
.. . ...+..++ .....++.......+..+......+..+. ....++
T Consensus 165 -------------~~-------~----~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 210 (398)
T 3oti_A 165 -------------RG-------M----HRSIASFL-------TDLMDKHQVSLPEPVATIESFPPSLLLEA---EPEGWF 210 (398)
T ss_dssp -------------TT-------H----HHHHHTTC-------HHHHHHTTCCCCCCSEEECSSCGGGGTTS---CCCSBC
T ss_pred -------------cc-------h----hhHHHHHH-------HHHHHHcCCCCCCCCeEEEeCCHHHCCCC---CCCCCC
Confidence 00 0 00000000 01111111111222334433332222110 001111
Q ss_pred CCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccC--CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccc
Q 039043 225 KPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVL--NKEQFQELVLGFELSGLPFLVALKPPVGHDTIE 302 (449)
Q Consensus 225 ~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~--~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 302 (449)
+.++ ... .+..+.+|+...+++++|||++||.... ..+.+..++++++..+.+++|+.+..... ..
T Consensus 211 --~~~~---~~~-----~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~--~l 278 (398)
T 3oti_A 211 --MRWV---PYG-----GGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDIS--PL 278 (398)
T ss_dssp --CCCC---CCC-----CCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCG--GG
T ss_pred --cccc---CCC-----CCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChh--hh
Confidence 1111 001 1233556777666788999999999653 55778889999998899999998765321 12
Q ss_pred cCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHH--HHHHhhhcce
Q 039043 303 SALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINA--RLMGEELKVG 380 (449)
Q Consensus 303 ~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na--~~v~~~~G~G 380 (449)
..++ +|+.+.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.|| .++++. |+|
T Consensus 279 ~~~~---------~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~-g~g 346 (398)
T 3oti_A 279 GTLP---------RNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRR-GIG 346 (398)
T ss_dssp CSCC---------TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHH-TSE
T ss_pred ccCC---------CcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHC-CCE
Confidence 2333 48999999999999999999 999999999999999999999999999999999 999998 999
Q ss_pred eEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+.++..+ .+.+.|. ++|+| ++++++++++++.+.+.++..++++.+++.+
T Consensus 347 ~~~~~~~----~~~~~l~----~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 347 LVSTSDK----VDADLLR----RLIGD------ESLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp EECCGGG----CCHHHHH----HHHHC------HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred EeeCCCC----CCHHHHH----HHHcC------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9998775 7888777 88899 9999999999999999988888888777654
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=5e-36 Score=295.41 Aligned_cols=357 Identities=14% Similarity=0.101 Sum_probs=230.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCC-CCCCCCC--CCCCCCCCCCcH
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPR-VDGLPPG--AETTNDVPFPLH 77 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~-~~~l~~~--~~~~~~~~~~~~ 77 (449)
|++.++.||++|++.||++|+++||+|++++++.+.+.+...| +.+..++-.. ...+... ............
T Consensus 20 ~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 20 VIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAG-----LPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTT-----CCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred EEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCC-----CeeEecCCccchHhhhhhhccCcccccccchh
Confidence 4567899999999999999999999999999999888888888 8888886110 0000000 000000111111
Q ss_pred -------HHHHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCC
Q 039043 78 -------PLLMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLT 149 (449)
Q Consensus 78 -------~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (449)
..+......+...+.+++++++||+||+|. .+++..+|+.+|||+|.+..........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~-------------- 160 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELI-------------- 160 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHH--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhh--------------
Confidence 112222334556788889999999999998 8889999999999999875543111000
Q ss_pred CCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHh-hhccCCcEEEEcCccccccchHHHhhhhcCCCeE
Q 039043 150 DNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNL-LSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVI 228 (449)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~ 228 (449)
...+.+++. ....++. ......+..+......+.+. .......+.
T Consensus 161 ----------------------~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 206 (398)
T 4fzr_A 161 ----------------------KSAGVGELA-------PELAELGLTDFPDPLLSIDVCPPSMEAQ-----PKPGTTKMR 206 (398)
T ss_dssp ----------------------HHHHHHHTH-------HHHHTTTCSSCCCCSEEEECSCGGGC---------CCCEECC
T ss_pred ----------------------hHHHHHHHH-------HHHHHcCCCCCCCCCeEEEeCChhhCCC-----CCCCCCCee
Confidence 000000000 0000000 01122244444443333321 000000112
Q ss_pred EeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCcccC--------CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc
Q 039043 229 LSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECVL--------NKEQFQELVLGFELSGLPFLVALKPPVGHDT 300 (449)
Q Consensus 229 ~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~--------~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 300 (449)
++++.. .+.++.+|+...+++++|||++||.... ..+.+..++++++..+.+++|+.+.....
T Consensus 207 ~~~~~~-------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~-- 277 (398)
T 4fzr_A 207 YVPYNG-------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQ-- 277 (398)
T ss_dssp CCCCCC-------SSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGGTCEEEECCCC------
T ss_pred eeCCCC-------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchh--
Confidence 222110 1223555666656678999999999753 33568889999988888999987764211
Q ss_pred cccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcce
Q 039043 301 IESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVG 380 (449)
Q Consensus 301 ~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 380 (449)
....++ +|+.+.+|+|+.++|+++++ ||||||.||++||+++|||+|++|...||+.||.++++. |+|
T Consensus 278 ~l~~~~---------~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~g 345 (398)
T 4fzr_A 278 TLQPLP---------EGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAA-GAG 345 (398)
T ss_dssp ----CC---------TTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHT-TSE
T ss_pred hhccCC---------CcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCE
Confidence 112233 48999999999999999999 999999999999999999999999999999999999999 999
Q ss_pred eEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFV 441 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 441 (449)
+.++..+ ++++.|.++|.++|+| +++++++++.++.+.+.++..+.++.+.
T Consensus 346 ~~~~~~~----~~~~~l~~ai~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 346 VEVPWEQ----AGVESVLAACARIRDD------SSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp EECC-----------CHHHHHHHHHHC------THHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred EecCccc----CCHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 9998776 8999999999999999 9999999999999998887777666554
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=2e-34 Score=283.25 Aligned_cols=360 Identities=13% Similarity=0.102 Sum_probs=242.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCC---CC----CCCCCCCCCCC
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVD---GL----PPGAETTNDVP 73 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~---~l----~~~~~~~~~~~ 73 (449)
|++.++.||++|++.||++|+++||+|++++++.+.+.+...| +.+..++-+..+ .+ +..........
T Consensus 6 ~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 6 VVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAG-----LTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp EECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBT-----CEEEEC--------------CCSCCGGGGCTT
T ss_pred EEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCC-----CceeeecCCccchhhhhhhccccccccccccc
Confidence 4667899999999999999999999999999988888888888 888887211110 00 00000000000
Q ss_pred -CCcHHHHHHHHhhc-------HHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhc
Q 039043 74 -FPLHPLLMTAMDLT-------EPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLR 144 (449)
Q Consensus 74 -~~~~~~~~~~~~~~-------~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 144 (449)
......+......+ ...+.+++++++||+||+|. .+++..+|+.+|||++.+.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~---------- 150 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPTAG---------- 150 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCTTT----------
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccccc----------
Confidence 01111222222234 67788999999999999998 888899999999999987543311000
Q ss_pred cccCCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhh-hccCCcEEEEcCccccccchHHHhhhhc
Q 039043 145 ERTLTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLL-SLSECDAIGFKTCREIEGPYCDYIGSQF 223 (449)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 223 (449)
.....+..++. ....++.. .....+..+.....+++.. ....
T Consensus 151 -------------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 193 (391)
T 3tsa_A 151 -------------------------PFSDRAHELLD-------PVCRHHGLTGLPTPELILDPCPPSLQAS-----DAPQ 193 (391)
T ss_dssp -------------------------HHHHHHHHHHH-------HHHHHTTSSSSCCCSEEEECSCGGGSCT-----TSCC
T ss_pred -------------------------cccchHHHHHH-------HHHHHcCCCCCCCCceEEEecChhhcCC-----CCCc
Confidence 00000000000 00011110 0111244454444333321 1101
Q ss_pred CCCeEEeCccCCCCCCccchhcccccccCCCCCeEEEEEeCCccc--CC-HHHHHHHHHHHHhC-CCCEEEEEcCCCCCC
Q 039043 224 GKPVILSGPALPESPRFALEERWETLLGSFKSKSLIFCAFGSECV--LN-KEQFQELVLGFELS-GLPFLVALKPPVGHD 299 (449)
Q Consensus 224 ~~~~~~vGp~~~~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~--~~-~~~~~~~~~al~~~-~~~~i~~~~~~~~~~ 299 (449)
...+.++ |. . .+..+..|+...+++++|||++||... .. .+.+..++.+ +.. +.+++|..+.....
T Consensus 194 ~~~~~~~-p~--~-----~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~- 263 (391)
T 3tsa_A 194 GAPVQYV-PY--N-----GSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRA- 263 (391)
T ss_dssp CEECCCC-CC--C-----CCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGG-
T ss_pred cCCeeee-cC--C-----CCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchh-
Confidence 1112222 11 0 122345677666678899999999954 23 6677788888 777 77888887653110
Q ss_pred ccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcc
Q 039043 300 TIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKV 379 (449)
Q Consensus 300 ~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 379 (449)
....+ .+|+.+.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.|+.++++. |+
T Consensus 264 -~l~~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~-g~ 330 (391)
T 3tsa_A 264 -LLTDL---------PDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAA-GA 330 (391)
T ss_dssp -GCTTC---------CTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHT-TS
T ss_pred -hcccC---------CCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHc-CC
Confidence 11222 348999999999999999999 999999999999999999999999999999999999999 99
Q ss_pred eeEeee--cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 380 GVEVEK--GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 380 G~~~~~--~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
|..+.. .+ .+++.|.++|.++|+| ++++++++++++.+.+.++..++++.+++.+.
T Consensus 331 g~~~~~~~~~----~~~~~l~~ai~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 331 GICLPDEQAQ----SDHEQFTDSIATVLGD------TGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp EEECCSHHHH----TCHHHHHHHHHHHHTC------THHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred EEecCccccc----CCHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 999987 65 7999999999999999 99999999999999988888888887776554
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=1.9e-32 Score=270.90 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=250.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCC--------CCCCCCCCC--
Q 039043 1 IYPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDG--------LPPGAETTN-- 70 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~--------l~~~~~~~~-- 70 (449)
|++.++.||++|++.||++|+++||+|++++++.+.+.+.+.| +.+..++.....+ +........
T Consensus 25 ~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 3otg_A 25 FASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLG-----FEPVATGMPVFDGFLAALRIRFDTDSPEGLTP 99 (412)
T ss_dssp EECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CEEEECCCCHHHHHHHHHHHHHSCSCCTTCCH
T ss_pred EEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcC-----CceeecCcccccchhhhhhhhhcccCCccCCh
Confidence 3567889999999999999999999999999998877777778 8888887200000 000000000
Q ss_pred -CCCCCcHHHHHHH-HhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhcccc
Q 039043 71 -DVPFPLHPLLMTA-MDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERT 147 (449)
Q Consensus 71 -~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 147 (449)
.........+... .......+.+++++.+||+||+|. .+++..+|+.+|||+|.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~--------------- 164 (412)
T 3otg_A 100 EQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP--------------- 164 (412)
T ss_dssp HHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC---------------
T ss_pred hHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCc---------------
Confidence 0001122222222 233457788899999999999998 7778899999999999764332110
Q ss_pred CCCCCCCCCCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHh------hhccCCcEEEEcCccccccchHHHhhh
Q 039043 148 LTDNDLLRPPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNL------LSLSECDAIGFKTCREIEGPYCDYIGS 221 (449)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~s~~~l~~~~~~~~~~ 221 (449)
+. ....+..++. +...+.. ......+..+..+...++.. ..
T Consensus 165 -------------~~--------~~~~~~~~~~-------~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~-----~~ 211 (412)
T 3otg_A 165 -------------DD--------LTRSIEEEVR-------GLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEP-----EF 211 (412)
T ss_dssp -------------SH--------HHHHHHHHHH-------HHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCH-----HH
T ss_pred -------------hh--------hhHHHHHHHH-------HHHHHcCCCCCcccccCCCCeEEeeCCHHhcCC-----cc
Confidence 00 0000000000 0000000 00123455555554444331 11
Q ss_pred hcCCCeEEeCccCCCCCCccchhccccc-ccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCc
Q 039043 222 QFGKPVILSGPALPESPRFALEERWETL-LGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDT 300 (449)
Q Consensus 222 ~~~~~~~~vGp~~~~~~~~~~~~~l~~~-l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 300 (449)
.+......+.+.... ...+..+| ....+++++|++++||......+.+..++.+++..+.+++|..+.....+
T Consensus 212 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~- 285 (412)
T 3otg_A 212 RARPRRHELRPVPFA-----EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVS- 285 (412)
T ss_dssp HTCTTEEECCCCCCC-----CCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCT-
T ss_pred cCCCCcceeeccCCC-----CCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChh-
Confidence 111112222222111 11224455 33335677999999999766778888999999988889999987754211
Q ss_pred cccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcce
Q 039043 301 IESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVG 380 (449)
Q Consensus 301 ~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G 380 (449)
....++ +|+.+.+|+|+.++|+++++ ||+|||+||++||+++|+|+|++|...||..|+..+++. |+|
T Consensus 286 ~l~~~~---------~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~-g~g 353 (412)
T 3otg_A 286 GLGEVP---------ANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA-GAG 353 (412)
T ss_dssp TCCCCC---------TTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHH-TSE
T ss_pred hhccCC---------CcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHHc-CCE
Confidence 122333 48999999999999999999 999999999999999999999999999999999999999 999
Q ss_pred eEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
..+...+ +++++|.++|.++|+| +++++++.+.++.+.+..+..+.++.+.+.+.+
T Consensus 354 ~~~~~~~----~~~~~l~~ai~~ll~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 354 DHLLPDN----ISPDSVSGAAKRLLAE------ESYRAGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp EECCGGG----CCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred EecCccc----CCHHHHHHHHHHHHhC------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 9999876 8999999999999999 999999999999999888888888887776653
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=7.2e-29 Score=240.86 Aligned_cols=303 Identities=14% Similarity=0.058 Sum_probs=189.3
Q ss_pred ccCCCC-CCHHHHHHHHHHHHhCCCEEEEEcCCccc--cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAM-GHLTPFLHIANKLAERGHRISFLLPAKAI--TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
++-++. ||++|.++||++|+++||+|+|+++.... +.+++.| +.+..++.. +++.. ...........
T Consensus 7 i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g-----~~~~~i~~~---~~~~~--~~~~~~~~~~~ 76 (365)
T 3s2u_A 7 IMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAG-----LPLHLIQVS---GLRGK--GLKSLVKAPLE 76 (365)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGT-----CCEEECC-------------------CHHH
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcC-----CcEEEEECC---CcCCC--CHHHHHHHHHH
Confidence 344555 99999999999999999999999987643 4567777 888888732 22110 00010111111
Q ss_pred HHHHHHhhcHHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCC
Q 039043 79 LLMTAMDLTEPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLR 155 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (449)
.+. .......++++.+||+||++. +..+..+|+.+|||+++.-.
T Consensus 77 ~~~-----~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~---------------------------- 123 (365)
T 3s2u_A 77 LLK-----SLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQ---------------------------- 123 (365)
T ss_dssp HHH-----HHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEEC----------------------------
T ss_pred HHH-----HHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEec----------------------------
Confidence 111 223566789999999999986 34457889999999986411
Q ss_pred CCCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCC
Q 039043 156 PPQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALP 235 (449)
Q Consensus 156 ~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~ 235 (449)
..+|+ + .+++. .+.++.+. .++++..+ ...+..++|+...
T Consensus 124 --n~~~G------------~--------------~nr~l--~~~a~~v~-~~~~~~~~---------~~~k~~~~g~pvr 163 (365)
T 3s2u_A 124 --NAVAG------------T--------------ANRSL--APIARRVC-EAFPDTFP---------ASDKRLTTGNPVR 163 (365)
T ss_dssp --SSSCC------------H--------------HHHHH--GGGCSEEE-ESSTTSSC---------C---CEECCCCCC
T ss_pred --chhhh------------h--------------HHHhh--ccccceee-eccccccc---------CcCcEEEECCCCc
Confidence 11121 0 00111 11123222 22221111 1234667775443
Q ss_pred CCCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCccccCCChhHHH
Q 039043 236 ESPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELS----GLPFLVALKPPVGHDTIESALPEGFEE 311 (449)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~lp~~~~~ 311 (449)
.... .+-..+....++++.|+|..||+.... ....+.++++.. +..+++.++..+ .+.+.+.+
T Consensus 164 ~~~~----~~~~~~~~~~~~~~~ilv~gGs~g~~~--~~~~~~~al~~l~~~~~~~vi~~~G~~~-----~~~~~~~~-- 230 (365)
T 3s2u_A 164 GELF----LDAHARAPLTGRRVNLLVLGGSLGAEP--LNKLLPEALAQVPLEIRPAIRHQAGRQH-----AEITAERY-- 230 (365)
T ss_dssp GGGC----CCTTSSCCCTTSCCEEEECCTTTTCSH--HHHHHHHHHHTSCTTTCCEEEEECCTTT-----HHHHHHHH--
T ss_pred hhhc----cchhhhcccCCCCcEEEEECCcCCccc--cchhhHHHHHhcccccceEEEEecCccc-----ccccccee--
Confidence 2211 001111222345679999999987533 223345555543 344666665431 11111111
Q ss_pred hcCCCeEEEeccchhh-hhhcCCCccceeccCCchhHHHHHhhCCcEeccccc----cchhhHHHHHHhhhcceeEeeec
Q 039043 312 RVKGRGFIHGGWVQQQ-LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV----GDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 312 ~~~~~~~~~~~~~pq~-~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
.....++.+.+|+++. ++|+.+|+ +|||+|.+|++|++++|+|+|.+|+. .+|..||..+++. |+|..++..
T Consensus 231 ~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~-G~a~~l~~~ 307 (365)
T 3s2u_A 231 RTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRS-GAGRLLPQK 307 (365)
T ss_dssp HHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTT-TSEEECCTT
T ss_pred cccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHC-CCEEEeecC
Confidence 1223477888999985 79999999 99999999999999999999999973 5899999999999 999999987
Q ss_pred CCCCcccHHHHHHHHHHHhcC
Q 039043 387 DEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+ +|++.|.++|.++|+|
T Consensus 308 ~----~~~~~L~~~i~~ll~d 324 (365)
T 3s2u_A 308 S----TGAAELAAQLSEVLMH 324 (365)
T ss_dssp T----CCHHHHHHHHHHHHHC
T ss_pred C----CCHHHHHHHHHHHHCC
Confidence 6 9999999999999998
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=206.79 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=139.0
Q ss_pred cchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEE
Q 039043 241 ALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFI 319 (449)
Q Consensus 241 ~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 319 (449)
+++.++.+|++..+++++|||++||+.. ...+.+..++.+++..+.+++|+.+... ...++ .|+.
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~-----~~~~~---------~~v~ 71 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNK-----PDTLG---------LNTR 71 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSC-----CTTCC---------TTEE
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcC-----cccCC---------CcEE
Confidence 4678899999877777899999999974 5678888899999888889999987542 12233 3899
Q ss_pred EeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHH
Q 039043 320 HGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCK 399 (449)
Q Consensus 320 ~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~ 399 (449)
+.+|+||.+++.|+.+++||||||+||++||+++|+|+|++|...||+.||.++++. |+|+.++..+ ++.++|.+
T Consensus 72 ~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~-g~g~~~~~~~----~~~~~l~~ 146 (170)
T 2o6l_A 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR-GAAVRVDFNT----MSSTDLLN 146 (170)
T ss_dssp EESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT-TSEEECCTTT----CCHHHHHH
T ss_pred EecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc-CCeEEecccc----CCHHHHHH
Confidence 999999999996555555999999999999999999999999999999999999998 9999998776 89999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHh
Q 039043 400 AVKAVIDDDHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 400 ~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
+|.++++| ++|+++++++++.+++
T Consensus 147 ~i~~ll~~------~~~~~~a~~~~~~~~~ 170 (170)
T 2o6l_A 147 ALKRVIND------PSYKENVMKLSRIQHD 170 (170)
T ss_dssp HHHHHHHC------HHHHHHHHHHC-----
T ss_pred HHHHHHcC------HHHHHHHHHHHHHhhC
Confidence 99999999 9999999999988763
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.82 E-value=2e-19 Score=174.34 Aligned_cols=327 Identities=13% Similarity=0.057 Sum_probs=203.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc--cccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAI--TKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
.+.-||..+++.||++|+++||+|++++..... ..+.+.| +++..++.. .+... .....+.
T Consensus 14 ~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g-----~~~~~~~~~---~~~~~---------~~~~~~~ 76 (364)
T 1f0k_A 14 GGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHG-----IEIDFIRIS---GLRGK---------GIKALIA 76 (364)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGT-----CEEEECCCC---CCTTC---------CHHHHHT
T ss_pred CCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccC-----CceEEecCC---ccCcC---------ccHHHHH
Confidence 344499999999999999999999999977532 3344456 888777632 11110 0011110
Q ss_pred H--HHhhcHHHHHHHHhhcCCCEEEEcC-C--CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCC
Q 039043 82 T--AMDLTEPAIESVLRHLKPDFVFFDF-T--HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRP 156 (449)
Q Consensus 82 ~--~~~~~~~~~~~ll~~~~pD~vI~D~-~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (449)
. ........+.+++++.+||+|+++. . ..+..+|+.+|+|+|......
T Consensus 77 ~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~--------------------------- 129 (364)
T 1f0k_A 77 APLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG--------------------------- 129 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS---------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC---------------------------
Confidence 0 0112345677888899999999986 3 335677888999998542211
Q ss_pred CCCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhcCCCeEEeCccCCC
Q 039043 157 PQGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQFGKPVILSGPALPE 236 (449)
Q Consensus 157 ~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~ 236 (449)
++. ... + ...+.++.+++.+... ++ ++..+|.....
T Consensus 130 ---~~~-----------~~~---------------~--~~~~~~d~v~~~~~~~------------~~-~~~~i~n~v~~ 165 (364)
T 1f0k_A 130 ---IAG-----------LTN---------------K--WLAKIATKVMQAFPGA------------FP-NAEVVGNPVRT 165 (364)
T ss_dssp ---SCC-----------HHH---------------H--HHTTTCSEEEESSTTS------------SS-SCEECCCCCCH
T ss_pred ---CCc-----------HHH---------------H--HHHHhCCEEEecChhh------------cC-CceEeCCccch
Confidence 000 000 0 0112344454433211 11 34555532211
Q ss_pred CCCccchhcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhHHH---
Q 039043 237 SPRFALEERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGFEE--- 311 (449)
Q Consensus 237 ~~~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~--- 311 (449)
..-. +....+.+...+++++++++.|+... ......++++++.. +.++++.+|.+. . +.+..
T Consensus 166 ~~~~--~~~~~~~~~~~~~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~-----~----~~l~~~~~ 232 (364)
T 1f0k_A 166 DVLA--LPLPQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS-----Q----QSVEQAYA 232 (364)
T ss_dssp HHHT--SCCHHHHHTTCCSSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC-----H----HHHHHHHH
T ss_pred hhcc--cchhhhhcccCCCCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch-----H----HHHHHHHh
Confidence 0000 00001112222345678888888753 34444455665543 455667676542 1 22221
Q ss_pred hcCCCeEEEeccchh-hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccc---cchhhHHHHHHhhhcceeEeeecC
Q 039043 312 RVKGRGFIHGGWVQQ-QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV---GDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 312 ~~~~~~~~~~~~~pq-~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
+..-+++.+.+|+++ .++++.+++ +|+++|.+++.||+++|+|+|+.|.. .||..|+..+.+. |.|..++..+
T Consensus 233 ~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~-g~g~~~~~~d 309 (364)
T 1f0k_A 233 EAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKA-GAAKIIEQPQ 309 (364)
T ss_dssp HTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHT-TSEEECCGGG
T ss_pred hcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhC-CcEEEecccc
Confidence 112247889999955 689999999 99999999999999999999999987 7999999999999 9999888765
Q ss_pred CCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 388 EDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 388 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
+++++|.++|.++ | ++.+++..+-+.......+..+.++.+++.+++
T Consensus 310 ----~~~~~la~~i~~l--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 310 ----LSVDAVANTLAGW--S------RETLLTMAERARAASIPDATERVANEVSRVARA 356 (364)
T ss_dssp ----CCHHHHHHHHHTC--C------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHhc--C------HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH
Confidence 6799999999998 6 666665555555554455566677777776664
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.70 E-value=8.3e-16 Score=141.93 Aligned_cols=118 Identities=9% Similarity=0.029 Sum_probs=90.5
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccchhh-hhhcC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWVQQQ-LILKH 332 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~pq~-~lL~~ 332 (449)
+.+.|+|++|..... .....++.+++... ++.++++.+... .+.+.... ..+|+.+..|+++. ++++.
T Consensus 156 ~~~~ILv~~GG~d~~--~l~~~vl~~L~~~~-~i~vv~G~~~~~-------~~~l~~~~~~~~~v~v~~~~~~m~~~m~~ 225 (282)
T 3hbm_A 156 KKYDFFICMGGTDIK--NLSLQIASELPKTK-IISIATSSSNPN-------LKKLQKFAKLHNNIRLFIDHENIAKLMNE 225 (282)
T ss_dssp CCEEEEEECCSCCTT--CHHHHHHHHSCTTS-CEEEEECTTCTT-------HHHHHHHHHTCSSEEEEESCSCHHHHHHT
T ss_pred cCCeEEEEECCCchh--hHHHHHHHHhhcCC-CEEEEECCCchH-------HHHHHHHHhhCCCEEEEeCHHHHHHHHHH
Confidence 356899999976533 34556777776543 677777765321 12222211 23489999999886 69999
Q ss_pred CCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeec
Q 039043 333 PSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
+++ +||+|| +|++|+++.|+|+|.+|...+|..||..+++. |++..+..-
T Consensus 226 aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~~~~~~~ 275 (282)
T 3hbm_A 226 SNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKK-GYEVEYKYL 275 (282)
T ss_dssp EEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCEEECGGG
T ss_pred CCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCEEEcchh
Confidence 999 999999 89999999999999999999999999999999 999887653
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.62 E-value=1.3e-15 Score=134.96 Aligned_cols=138 Identities=11% Similarity=0.084 Sum_probs=97.0
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHH-----HHHHHhCC-CCEEEEEcCCCCCC-c-cccC---------CChhH-------
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQEL-----VLGFELSG-LPFLVALKPPVGHD-T-IESA---------LPEGF------- 309 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~-----~~al~~~~-~~~i~~~~~~~~~~-~-~~~~---------lp~~~------- 309 (449)
++++.|||+.||... -.+.+..+ +.+|...+ .++++.+|...... . .... +|.+.
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~ 104 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTA 104 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTTCSC
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhccccccccccccccccccc
Confidence 457799999999842 23333333 47787777 78999998753210 0 0000 11000
Q ss_pred H---HhcCCCeEEEeccchhh-hhhc-CCCccceeccCCchhHHHHHhhCCcEeccccc----cchhhHHHHHHhhhcce
Q 039043 310 E---ERVKGRGFIHGGWVQQQ-LILK-HPSVGCFVTHCGSGSLSEAMVNECQLVLLPNV----GDQIINARLMGEELKVG 380 (449)
Q Consensus 310 ~---~~~~~~~~~~~~~~pq~-~lL~-~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~G~G 380 (449)
. .....-++.+.+|+++. ++|+ .+++ +|||||+||++|++++|||+|++|.. .||..||.++++. |++
T Consensus 105 ~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~-G~~ 181 (224)
T 2jzc_A 105 RQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVEL-GYV 181 (224)
T ss_dssp EEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHH-SCC
T ss_pred cccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHC-CCE
Confidence 0 00011267788898886 7999 9999 99999999999999999999999974 4699999999999 998
Q ss_pred eEeeecCCCCcccHHHHHHHHHHH
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+.+ +++.|.++|+++
T Consensus 182 ~~~---------~~~~L~~~i~~l 196 (224)
T 2jzc_A 182 WSC---------APTETGLIAGLR 196 (224)
T ss_dssp CEE---------CSCTTTHHHHHH
T ss_pred EEc---------CHHHHHHHHHHH
Confidence 754 335677777776
No 25
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.35 E-value=4.7e-10 Score=109.39 Aligned_cols=336 Identities=15% Similarity=0.070 Sum_probs=171.3
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcCCcccccc-CCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhh
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLPAKAITKF-EPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDL 86 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~-~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (449)
|.-.-...||++|+++||+|++++........ ...+ +.+..++.... +. ... ... .+ .
T Consensus 28 G~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~-----i~~~~~~~~~~---~~----~~~---~~~-~~-----~ 86 (394)
T 2jjm_A 28 GSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPN-----IYFHEVTVNQY---SV----FQY---PPY-DL-----A 86 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSSCC----CCCTT-----EEEECCCCC-----------CCS---CCH-HH-----H
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccccCCc-----eEEEecccccc---cc----ccc---ccc-cH-----H
Confidence 45567788999999999999999976432111 1112 76666652211 10 000 000 01 1
Q ss_pred cHHHHHHHHhhcCCCEEEEcC-CCC--hHHHHHH-h--CCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCCCC
Q 039043 87 TEPAIESVLRHLKPDFVFFDF-THW--LPPLARK-F--GIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQGF 160 (449)
Q Consensus 87 ~~~~~~~ll~~~~pD~vI~D~-~~~--~~~~A~~-~--giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (449)
....+.+++++.+||+|++.. ... ...++.. + ++|+|......... . . ..
T Consensus 87 ~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~---~-------------------~~ 142 (394)
T 2jjm_A 87 LASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT--V---L-------------------GS 142 (394)
T ss_dssp HHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH--T---T-------------------TT
T ss_pred HHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc--c---c-------------------CC
Confidence 234567788889999999876 322 2334443 3 59988654332211 0 0 00
Q ss_pred CCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc--CCCeEEeCccCCCCC
Q 039043 161 PTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF--GKPVILSGPALPESP 238 (449)
Q Consensus 161 p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~~~~~vGp~~~~~~ 238 (449)
...+... ....+..++.+++.|-... +.....+ ..++..+..-.....
T Consensus 143 -----------------------~~~~~~~--~~~~~~~ad~ii~~s~~~~-----~~~~~~~~~~~~~~vi~ngv~~~~ 192 (394)
T 2jjm_A 143 -----------------------DPSLNNL--IRFGIEQSDVVTAVSHSLI-----NETHELVKPNKDIQTVYNFIDERV 192 (394)
T ss_dssp -----------------------CTTTHHH--HHHHHHHSSEEEESCHHHH-----HHHHHHTCCSSCEEECCCCCCTTT
T ss_pred -----------------------CHHHHHH--HHHHHhhCCEEEECCHHHH-----HHHHHhhCCcccEEEecCCccHHh
Confidence 0000000 1112344666776653321 1222222 235555554322111
Q ss_pred -CccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHh---
Q 039043 239 -RFALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEER--- 312 (449)
Q Consensus 239 -~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~--- 312 (449)
......++.+-+... ++..+++..|+... ...+.+...+..+... +.+ ++.+|.+.. .+.+...
T Consensus 193 ~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~-l~i~G~g~~--------~~~l~~~~~~ 262 (394)
T 2jjm_A 193 YFKRDMTQLKKEYGIS-ESEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAK-LLLVGDGPE--------FCTILQLVKN 262 (394)
T ss_dssp CCCCCCHHHHHHTTCC----CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCE-EEEECCCTT--------HHHHHHHHHT
T ss_pred cCCcchHHHHHHcCCC-CCCeEEEEeeccccccCHHHHHHHHHHHHhhCCCE-EEEECCchH--------HHHHHHHHHH
Confidence 000111121112211 22255556677653 3334444444444332 333 444444321 1122211
Q ss_pred c-CCCeEEEeccchh-hhhhcCCCcccee----ccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeec
Q 039043 313 V-KGRGFIHGGWVQQ-QLILKHPSVGCFV----THCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 313 ~-~~~~~~~~~~~pq-~~lL~~~~~~~~I----~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 386 (449)
. ..+++.+.++..+ .++++.+++ +| .-|..+++.||+++|+|+|+.+.. .....+++. +.|..++..
T Consensus 263 ~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~----~~~e~v~~~-~~g~~~~~~ 335 (394)
T 2jjm_A 263 LHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG----GIPEVIQHG-DTGYLCEVG 335 (394)
T ss_dssp TTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT----TSTTTCCBT-TTEEEECTT
T ss_pred cCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC----ChHHHhhcC-CceEEeCCC
Confidence 1 1357777777654 479999999 87 556667999999999999997753 233344444 677777653
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 387 DEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENH-AKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 387 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+.+++.++|.++++| ++.+++. +...+.+.+.-+..+.++.+++.+++.
T Consensus 336 ------d~~~la~~i~~l~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 385 (394)
T 2jjm_A 336 ------DTTGVADQAIQLLKD------EELHRNMGERARESVYEQFRSEKIVSQYETIYYDV 385 (394)
T ss_dssp ------CHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHcC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 789999999999998 5443332 222233334445566666666666543
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.34 E-value=1.2e-11 Score=119.92 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCccccCCChhHHHhc-CCCeEEEeccch---
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELS-----GLPFLVALKPPVGHDTIESALPEGFEERV-KGRGFIHGGWVQ--- 325 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~p--- 325 (449)
++++|+++.|...... .+..++++++.. +.++++..+.+. .+-+.+.... ..+++.+.++++
T Consensus 197 ~~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~~-------~~~~~l~~~~~~~~~v~~~g~~g~~~ 267 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLNP-------VVREAVFPVLKGVRNFVLLDPLEYGS 267 (376)
T ss_dssp SSCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSCH-------HHHHHHHHHHTTCTTEEEECCCCHHH
T ss_pred CCCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCCH-------HHHHHHHHHhccCCCEEEECCCCHHH
Confidence 3457777777553221 345555555432 344554444321 0001121111 135788885544
Q ss_pred hhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 326 QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 326 q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
..++|+.+++ ||+.+| |.+.||+++|+|+|+.+...+++.. .+. |.|..++ .++++|.++|.+++
T Consensus 268 ~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~~----~~~-g~g~lv~-------~d~~~la~~i~~ll 332 (376)
T 1v4v_A 268 MAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPEG----LKA-GILKLAG-------TDPEGVYRVVKGLL 332 (376)
T ss_dssp HHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHHH----HHH-TSEEECC-------SCHHHHHHHHHHHH
T ss_pred HHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchhh----hcC-CceEECC-------CCHHHHHHHHHHHH
Confidence 4589999999 999984 4566999999999998876666653 456 8887664 27899999999999
Q ss_pred cCCCchhHHHHHHHHH
Q 039043 406 DDDHSEVGKEIKENHA 421 (449)
Q Consensus 406 ~~~~~~~~~~~~~~a~ 421 (449)
+| ++.+++..
T Consensus 333 ~d------~~~~~~~~ 342 (376)
T 1v4v_A 333 EN------PEELSRMR 342 (376)
T ss_dssp TC------HHHHHHHH
T ss_pred hC------hHhhhhhc
Confidence 98 65554433
No 27
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.31 E-value=4e-10 Score=111.45 Aligned_cols=336 Identities=13% Similarity=0.082 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCccccc--cC--CCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHH
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKAITK--FE--PSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMT 82 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~--~~--~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (449)
-|+-..+..||++|.++||+|++++....... .. ..| +++..++......+. . ......+..
T Consensus 42 GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-----v~v~~~~~~~~~~~~-----~----~~~~~~~~~ 107 (438)
T 3c48_A 42 GGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAEN-----LRVINIAAGPYEGLS-----K----EELPTQLAA 107 (438)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEEETT-----EEEEEECCSCSSSCC-----G----GGGGGGHHH
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCC-----eEEEEecCCCccccc-----h----hHHHHHHHH
Confidence 47778899999999999999999986643211 11 123 778777632111110 0 011111111
Q ss_pred HHhhcHHHHHHH-Hhhc-CCCEEEEcC---CCChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCC
Q 039043 83 AMDLTEPAIESV-LRHL-KPDFVFFDF---THWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPP 157 (449)
Q Consensus 83 ~~~~~~~~~~~l-l~~~-~pD~vI~D~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (449)
....+... ++.. +||+|++.. ...+..+++.+++|+|...........
T Consensus 108 ----~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----------------------- 160 (438)
T 3c48_A 108 ----FTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKN----------------------- 160 (438)
T ss_dssp ----HHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHHS-----------------------
T ss_pred ----HHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCccccc-----------------------
Confidence 11222233 4444 499999875 234456778899999876444322100
Q ss_pred CCCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc---CCCeEEeCccC
Q 039043 158 QGFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF---GKPVILSGPAL 234 (449)
Q Consensus 158 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~---~~~~~~vGp~~ 234 (449)
..+.. . ....... ... .....+..++.+++.|-...+ .+...+ ..++..+..-.
T Consensus 161 ~~~~~-------~--~~~~~~~-------~~~--~~~~~~~~~d~ii~~s~~~~~-----~~~~~~g~~~~k~~vi~ngv 217 (438)
T 3c48_A 161 SYRDD-------S--DTPESEA-------RRI--CEQQLVDNADVLAVNTQEEMQ-----DLMHHYDADPDRISVVSPGA 217 (438)
T ss_dssp CC-------------CCHHHHH-------HHH--HHHHHHHHCSEEEESSHHHHH-----HHHHHHCCCGGGEEECCCCC
T ss_pred ccccc-------c--CCcchHH-------HHH--HHHHHHhcCCEEEEcCHHHHH-----HHHHHhCCChhheEEecCCc
Confidence 00000 0 0000000 000 011234557777776643222 122211 12355555332
Q ss_pred CCCCCccc-hh---cccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCCE-EEEEcCCCCCCccccCCC
Q 039043 235 PESPRFAL-EE---RWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS--GLPF-LVALKPPVGHDTIESALP 306 (449)
Q Consensus 235 ~~~~~~~~-~~---~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~-i~~~~~~~~~~~~~~~lp 306 (449)
....-.+. .. .+.+-+...++ ..+++..|+... ...+.+...+..+... +.++ ++.+|.... .+...
T Consensus 218 d~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~----~g~~~ 292 (438)
T 3c48_A 218 DVELYSPGNDRATERSRRELGIPLH-TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSG----PNATP 292 (438)
T ss_dssp CTTTSCCC----CHHHHHHTTCCSS-SEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC----------
T ss_pred cccccCCcccchhhhhHHhcCCCCC-CcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCC----CCcHH
Confidence 21100000 00 12222222222 356667787653 3334444444444322 2233 334443110 01111
Q ss_pred hhHHH---h-cCCCeEEEeccchh---hhhhcCCCccceeccC---C-chhHHHHHhhCCcEeccccccchhhHHHHHHh
Q 039043 307 EGFEE---R-VKGRGFIHGGWVQQ---QLILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGE 375 (449)
Q Consensus 307 ~~~~~---~-~~~~~~~~~~~~pq---~~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 375 (449)
+.+.. + ...+++.+.+++|+ .++++.+++ +|.-. | .+++.||+++|+|+|+.+. ......+++
T Consensus 293 ~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~ 366 (438)
T 3c48_A 293 DTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAE 366 (438)
T ss_dssp CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCB
T ss_pred HHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhC
Confidence 22221 1 12468999999976 368888999 77543 3 4689999999999999764 345556666
Q ss_pred hhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 039043 376 ELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREF 426 (449)
Q Consensus 376 ~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~ 426 (449)
. +.|..++.. +.+++.++|.++++| .+...++.+++++..+.
T Consensus 367 ~-~~g~~~~~~------d~~~la~~i~~l~~~--~~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 367 G-ETGLLVDGH------SPHAWADALATLLDD--DETRIRMGEDAVEHART 408 (438)
T ss_dssp T-TTEEEESSC------CHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred C-CcEEECCCC------CHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHh
Confidence 5 678777653 789999999999998 12223444555554444
No 28
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.29 E-value=2e-11 Score=118.63 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=82.3
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCccccCCChhHHHhcC-CCeEEEeccchh--
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELS-----GLPFLVALKPPVGHDTIESALPEGFEERVK-GRGFIHGGWVQQ-- 326 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq-- 326 (449)
++++++++.|......+ .+..++++++.. +.++++..+.+. .+-+.+..... .+++.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~k-g~~~li~a~~~l~~~~~~~~l~i~~g~~~-------~~~~~l~~~~~~~~~v~~~g~~~~~~ 275 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGR-GFEEICHALADIATTHQDIQIVYPVHLNP-------NVREPVNRILGHVKNVILIDPQEYLP 275 (384)
T ss_dssp TSEEEEEECCCBSSCCH-HHHHHHHHHHHHHHHCTTEEEEEECCBCH-------HHHHHHHHHHTTCTTEEEECCCCHHH
T ss_pred CCCEEEEEeCCccccch-HHHHHHHHHHHHHhhCCCeEEEEEcCCCH-------HHHHHHHHHhhcCCCEEEeCCCCHHH
Confidence 45678888887653322 344455554322 344444333210 01111211111 258888665553
Q ss_pred -hhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 327 -QLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 327 -~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
.++|+.+++ ||+.+| |++.||+++|+|+|+.+..++... +.+. |.|..++. ++++|.++|.+++
T Consensus 276 ~~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~~e----~v~~-g~g~lv~~-------d~~~la~~i~~ll 340 (384)
T 1vgv_A 276 FVWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTERPE----AVTA-GTVRLVGT-------DKQRIVEEVTRLL 340 (384)
T ss_dssp HHHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCSCHH----HHHH-TSEEEECS-------SHHHHHHHHHHHH
T ss_pred HHHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCCcch----hhhC-CceEEeCC-------CHHHHHHHHHHHH
Confidence 578999999 999985 458899999999999987444433 3456 88876643 6899999999999
Q ss_pred cC
Q 039043 406 DD 407 (449)
Q Consensus 406 ~~ 407 (449)
+|
T Consensus 341 ~d 342 (384)
T 1vgv_A 341 KD 342 (384)
T ss_dssp HC
T ss_pred hC
Confidence 98
No 29
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.26 E-value=1.4e-09 Score=105.70 Aligned_cols=329 Identities=12% Similarity=0.070 Sum_probs=180.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc----ccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHH
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAIT----KFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLM 81 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~----~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (449)
.-|....+..|++.| +||+|++++...... .....+ +.+..++... .++ ..
T Consensus 18 ~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~------------~~---- 72 (394)
T 3okp_A 18 IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLD-----YEVIRWPRSV--MLP------------TP---- 72 (394)
T ss_dssp CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCS-----SEEEEESSSS--CCS------------CH----
T ss_pred cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccc-----eEEEEccccc--ccc------------ch----
Confidence 457777888999999 699999999876543 122334 7777776210 000 00
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC-C--CChHHHHHHhCCceEEEecchHHHHHhhcchhhhhccccCCCCCCCCCCC
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF-T--HWLPPLARKFGIKSVLYCIISPATIGYLLSPERKLRERTLTDNDLLRPPQ 158 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~-~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (449)
.....+.+++++.+||+|++.. . .....+++.+|+|.+++....... ..
T Consensus 73 ----~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-~~----------------------- 124 (394)
T 3okp_A 73 ----TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEV-GW----------------------- 124 (394)
T ss_dssp ----HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHH-HH-----------------------
T ss_pred ----hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchh-hh-----------------------
Confidence 2345677888999999999865 3 345667888999955432221110 00
Q ss_pred CCCCCccccCchhhchhhhhhhccCCCchHHHHHHhhhccCCcEEEEcCccccccchHHHhhhhc--CCCeEEeCccCCC
Q 039043 159 GFPTSKIRLRAHEARGLAAATVKEFGGGLSFAKRNLLSLSECDAIGFKTCREIEGPYCDYIGSQF--GKPVILSGPALPE 236 (449)
Q Consensus 159 ~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~--~~~~~~vGp~~~~ 236 (449)
......+ ......+..++.+++.|.... +.....+ ..++..+..-...
T Consensus 125 -----------------------~~~~~~~--~~~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~~~vi~ngv~~ 174 (394)
T 3okp_A 125 -----------------------SMLPGSR--QSLRKIGTEVDVLTYISQYTL-----RRFKSAFGSHPTFEHLPSGVDV 174 (394)
T ss_dssp -----------------------TTSHHHH--HHHHHHHHHCSEEEESCHHHH-----HHHHHHHCSSSEEEECCCCBCT
T ss_pred -----------------------hhcchhh--HHHHHHHHhCCEEEEcCHHHH-----HHHHHhcCCCCCeEEecCCcCH
Confidence 0000000 011122355677777664322 2222222 2345555533221
Q ss_pred C---C-CccchhcccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhH
Q 039043 237 S---P-RFALEERWETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGF 309 (449)
Q Consensus 237 ~---~-~~~~~~~l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~ 309 (449)
. + ......++.+.+... ++..+++..|+... ...+.+...+..+... +.++++ +|.+.. .+.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~~--------~~~l 244 (394)
T 3okp_A 175 KRFTPATPEDKSATRKKLGFT-DTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLI-VGSGRY--------ESTL 244 (394)
T ss_dssp TTSCCCCHHHHHHHHHHTTCC-TTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEE-ECCCTT--------HHHH
T ss_pred HHcCCCCchhhHHHHHhcCCC-cCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEE-EcCchH--------HHHH
Confidence 1 1 111112222223222 23356667777643 3344444444444332 344443 443311 1122
Q ss_pred HHh--cCCCeEEEeccchhh---hhhcCCCccceec-----------cCCchhHHHHHhhCCcEeccccccchhhHHHHH
Q 039043 310 EER--VKGRGFIHGGWVQQQ---LILKHPSVGCFVT-----------HCGSGSLSEAMVNECQLVLLPNVGDQIINARLM 373 (449)
Q Consensus 310 ~~~--~~~~~~~~~~~~pq~---~lL~~~~~~~~I~-----------HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v 373 (449)
... ...+++.+.+++|+. ++++.+++ +|. -|..+++.||+++|+|+|+.+..+ ....+
T Consensus 245 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~e~i 318 (394)
T 3okp_A 245 RRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGG----APETV 318 (394)
T ss_dssp HHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTT----GGGGC
T ss_pred HHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCCEEEeCCCC----hHHHH
Confidence 211 113589999999754 57888999 776 555678999999999999977532 22222
Q ss_pred HhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHH-HHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 374 GEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHA-KWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 374 ~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+. |.|..++.. +.+++.++|.++++| ++.+++.. ...+.+.+.-+.+..++.+++.++++
T Consensus 319 -~~-~~g~~~~~~------d~~~l~~~i~~l~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 319 -TP-ATGLVVEGS------DVDKLSELLIELLDD------PIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSE 379 (394)
T ss_dssp -CT-TTEEECCTT------CHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSC
T ss_pred -hc-CCceEeCCC------CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 24 667666653 899999999999998 44333322 22333333445667777777777654
No 30
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.24 E-value=2.2e-09 Score=104.79 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=98.6
Q ss_pred EEEEEeCCc-cc-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCccccCCChhHHHhcC--CCeEEEeccchhh---h
Q 039043 258 LIFCAFGSE-CV-LNKEQFQELVLGFELS--GLPFLVALKPPVGHDTIESALPEGFEERVK--GRGFIHGGWVQQQ---L 328 (449)
Q Consensus 258 ~v~vs~GS~-~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~~~pq~---~ 328 (449)
.+++..|+. .. ...+.+...+..+... +.++ +.+|.+. . +.+..... .+++.+.+++++. +
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~~~--------~-~~l~~~~~~~~~~v~~~g~~~~~~~~~ 278 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEI-LIVGRGD--------E-DELREQAGDLAGHLRFLGQVDDATKAS 278 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEE-EEESCSC--------H-HHHHHHTGGGGGGEEECCSCCHHHHHH
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEE-EEEcCCc--------H-HHHHHHHHhccCcEEEEecCCHHHHHH
Confidence 456667777 32 3444444444444432 3333 3344331 1 22322211 4689999999874 6
Q ss_pred hhcCCCccceec----cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 329 ILKHPSVGCFVT----HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 329 lL~~~~~~~~I~----HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
++..+++ +|. +.|+ +++.||+++|+|+|+.+. ......+.+. +.|..++.. +.+++.++|.+
T Consensus 279 ~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~~------d~~~l~~~i~~ 345 (406)
T 2gek_A 279 AMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLADG-DAGRLVPVD------DADGMAAALIG 345 (406)
T ss_dssp HHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTTT-TSSEECCTT------CHHHHHHHHHH
T ss_pred HHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcCC-CceEEeCCC------CHHHHHHHHHH
Confidence 8889999 764 3344 489999999999999765 4555666665 678777653 78999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 404 VIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 404 ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++++ ++.+++..+-+......-+..+.++.+++.+++
T Consensus 346 l~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 382 (406)
T 2gek_A 346 ILED------DQLRAGYVARASERVHRYDWSVVSAQIMRVYET 382 (406)
T ss_dssp HHHC------HHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHH
T ss_pred HHcC------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9998 554443333333322244455566666665554
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.23 E-value=4.5e-11 Score=116.71 Aligned_cols=159 Identities=11% Similarity=0.080 Sum_probs=95.3
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCccccCCChhHHHh-cCCCeEEEeccch--
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGFELS-----GLPFLVALKPPVGHDTIESALPEGFEER-VKGRGFIHGGWVQ-- 325 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~~~~~~p-- 325 (449)
+++++++++.+-...... .+..++++++.. +.++++.++.+.. +-+.+... ...+++.+.++++
T Consensus 228 ~~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~-------~~~~l~~~~~~~~~v~~~~~lg~~ 299 (396)
T 3dzc_A 228 ASKKLILVTGHRRESFGG-GFERICQALITTAEQHPECQILYPVHLNPN-------VREPVNKLLKGVSNIVLIEPQQYL 299 (396)
T ss_dssp TTSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTEEEEEECCBCHH-------HHHHHHHHTTTCTTEEEECCCCHH
T ss_pred CCCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCceEEEEeCCChH-------HHHHHHHHHcCCCCEEEeCCCCHH
Confidence 346677777532122222 245666665432 4455655443210 00111111 1235788877764
Q ss_pred -hhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 326 -QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 326 -q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
...+++.+++ +|+-.| |.+.||+++|+|+|+.....+++. +.+. |.++.+. .++++|.+++.++
T Consensus 300 ~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~e----~v~~-G~~~lv~-------~d~~~l~~ai~~l 364 (396)
T 3dzc_A 300 PFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERPE----AVAA-GTVKLVG-------TNQQQICDALSLL 364 (396)
T ss_dssp HHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCHH----HHHH-TSEEECT-------TCHHHHHHHHHHH
T ss_pred HHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcchH----HHHc-CceEEcC-------CCHHHHHHHHHHH
Confidence 4578999999 999988 666899999999999866556542 3456 8774432 2689999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 405 IDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 405 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
++| ++.+++..+-+.. -+...+.+.+++.+.
T Consensus 365 l~d------~~~~~~m~~~~~~----~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 365 LTD------PQAYQAMSQAHNP----YGDGKACQRIADILA 395 (396)
T ss_dssp HHC------HHHHHHHHTSCCT----TCCSCHHHHHHHHHH
T ss_pred HcC------HHHHHHHhhccCC----CcCChHHHHHHHHHh
Confidence 998 6655443332221 233445666666654
No 32
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.21 E-value=3.7e-11 Score=117.58 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=95.4
Q ss_pred CCCeEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCCEEEEEcCCCCCCccccCCChhHHHh-cCCCeEEEeccch--
Q 039043 254 KSKSLIFCAFGSECVLNKEQFQELVLGFEL-----SGLPFLVALKPPVGHDTIESALPEGFEER-VKGRGFIHGGWVQ-- 325 (449)
Q Consensus 254 ~~k~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~lp~~~~~~-~~~~~~~~~~~~p-- 325 (449)
+++++++++.|...... +.+..++++++. .+.++++..+.+.. +-+.+... ...+++.+.++++
T Consensus 222 ~~~~~vlv~~~r~~~~~-~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~-------~~~~l~~~~~~~~~v~l~~~l~~~ 293 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLG-EPMQGMFEAVREIVESREDTELVYPMHLNPA-------VREKAMAILGGHERIHLIEPLDAI 293 (403)
T ss_dssp TTCEEEEECCCCHHHHT-THHHHHHHHHHHHHHHCTTEEEEEECCSCHH-------HHHHHHHHHTTCTTEEEECCCCHH
T ss_pred cCCCEEEEEeCcccccC-cHHHHHHHHHHHHHHhCCCceEEEecCCCHH-------HHHHHHHHhCCCCCEEEeCCCCHH
Confidence 34568888766432211 124555555432 24456655443200 00111111 1235898888886
Q ss_pred -hhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 326 -QQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 326 -q~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
...+++.+++ +|+-.|. ...||+++|+|+|++|...+++. +.+. |.|..+. .++++|.+++.++
T Consensus 294 ~~~~l~~~ad~--vv~~SGg-~~~EA~a~g~PvV~~~~~~~~~e----~v~~-g~~~lv~-------~d~~~l~~ai~~l 358 (403)
T 3ot5_A 294 DFHNFLRKSYL--VFTDSGG-VQEEAPGMGVPVLVLRDTTERPE----GIEA-GTLKLIG-------TNKENLIKEALDL 358 (403)
T ss_dssp HHHHHHHHEEE--EEECCHH-HHHHGGGTTCCEEECCSSCSCHH----HHHH-TSEEECC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHhcCE--EEECCcc-HHHHHHHhCCCEEEecCCCcchh----heeC-CcEEEcC-------CCHHHHHHHHHHH
Confidence 3478899999 9988753 33699999999999976666654 2457 8776554 2789999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 039043 405 IDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKL 444 (449)
Q Consensus 405 l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 444 (449)
++| ++.+++...-+..+.+.+.+.+.++.+.+.+
T Consensus 359 l~~------~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l 392 (403)
T 3ot5_A 359 LDN------KESHDKMAQAANPYGDGFAANRILAAIKSHF 392 (403)
T ss_dssp HHC------HHHHHHHHHSCCTTCCSCHHHHHHHHHHHHH
T ss_pred HcC------HHHHHHHHhhcCcccCCcHHHHHHHHHHHHh
Confidence 998 6665544432222323333344444444433
No 33
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.19 E-value=1.4e-08 Score=97.89 Aligned_cols=162 Identities=9% Similarity=0.086 Sum_probs=100.8
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCC----C-EEEEEcCCCCCCccccCCChhHHH---h-cCCCeEEEeccchh-
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGL----P-FLVALKPPVGHDTIESALPEGFEE---R-VKGRGFIHGGWVQQ- 326 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~----~-~i~~~~~~~~~~~~~~~lp~~~~~---~-~~~~~~~~~~~~pq- 326 (449)
..+++..|+... ...+..++.+++.... + -++.+|.+.. +.+.. + ...+++.+.++..+
T Consensus 196 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~---------~~~~~~~~~~~~~~~v~~~g~~~~~ 264 (374)
T 2iw1_A 196 QNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQDKP---------RKFEALAEKLGVRSNVHFFSGRNDV 264 (374)
T ss_dssp CEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC---------HHHHHHHHHHTCGGGEEEESCCSCH
T ss_pred CeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCCCH---------HHHHHHHHHcCCCCcEEECCCcccH
Confidence 366667777653 3445556667665432 2 3444554311 22221 1 12468888888655
Q ss_pred hhhhcCCCccceec----cCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 327 QLILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 327 ~~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
.++++.+++ +|. -|..+++.||+++|+|+|+... ..+...+++. +.|..++.. -+.+++.++|.
T Consensus 265 ~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~~-----~~~~~l~~~i~ 332 (374)
T 2iw1_A 265 SELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADA-NCGTVIAEP-----FSQEQLNEVLR 332 (374)
T ss_dssp HHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHH-TCEEEECSS-----CCHHHHHHHHH
T ss_pred HHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccC-CceEEeCCC-----CCHHHHHHHHH
Confidence 478999999 775 4566889999999999999765 3455677777 889888733 38999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 403 AVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 403 ~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
++++| ++.+++..+-+......-+.....+.+.+.++++
T Consensus 333 ~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 333 KALTQ------SPLRMAWAENARHYADTQDLYSLPEKAADIITGG 371 (374)
T ss_dssp HHHHC------HHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred HHHcC------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99998 5444333333333222223344455555555543
No 34
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.16 E-value=2.6e-08 Score=98.04 Aligned_cols=166 Identities=10% Similarity=0.032 Sum_probs=100.2
Q ss_pred EEEEEeCCcc-c-CCHHHHHHHHHHHHhCC--CCE-EEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hh
Q 039043 258 LIFCAFGSEC-V-LNKEQFQELVLGFELSG--LPF-LVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LI 329 (449)
Q Consensus 258 ~v~vs~GS~~-~-~~~~~~~~~~~al~~~~--~~~-i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~l 329 (449)
.+++..|+.. . ...+.+...+..+...+ .++ ++.+|.+... ....+ .....+.. +++.+.+|+++. ++
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~--~~~~l-~~~~~~~~-~~~~~~g~~~~~~~~~~ 327 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE--LEGWA-RSLEEKHG-NVKVITEMLSREFVREL 327 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHH--HHHHH-HHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChh--HHHHH-HHHHhhcC-CEEEEcCCCCHHHHHHH
Confidence 6677788876 3 45566666665555432 233 3334433110 00000 11111222 567788889875 57
Q ss_pred hcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHh
Q 039043 330 LKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 330 L~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
++.+++ +|.- |-.+++.||+++|+|+|+... ......++ . |.|..++.. +.+++.++|.+++
T Consensus 328 ~~~adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~~-~-~~g~~~~~~------d~~~la~~i~~ll 393 (439)
T 3fro_A 328 YGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDIIT-N-ETGILVKAG------DPGELANAILKAL 393 (439)
T ss_dssp HTTCSE--EEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHCC-T-TTCEEECTT------CHHHHHHHHHHHH
T ss_pred HHHCCE--EEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeEE-c-CceEEeCCC------CHHHHHHHHHHHH
Confidence 888998 7743 334789999999999999654 33444443 5 788777764 8999999999999
Q ss_pred c-CCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 406 D-DDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 406 ~-~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+ + .+....+.+++++.. ..-+....++.+++.+++.
T Consensus 394 ~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~ 430 (439)
T 3fro_A 394 ELS--RSDLSKFRENCKKRA----MSFSWEKSAERYVKAYTGS 430 (439)
T ss_dssp HHT--TTTTHHHHHHHHHHH----HTSCHHHHHHHHHHHHHTC
T ss_pred hcC--HHHHHHHHHHHHHHH----hhCcHHHHHHHHHHHHHHH
Confidence 8 6 122345555555444 2345666777777776654
No 35
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.12 E-value=4.9e-09 Score=105.59 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=73.8
Q ss_pred CCeEEEeccchhh---hhhcCC----Cccceecc---CC-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEe
Q 039043 315 GRGFIHGGWVQQQ---LILKHP----SVGCFVTH---CG-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEV 383 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~----~~~~~I~H---gG-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~ 383 (449)
.+++.+.+++|+. ++++.+ ++ +|.- -| ..++.||+++|+|+|+... ......+.+. ..|..+
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~~-~~g~l~ 406 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDGG-KYGVLV 406 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGGG-TSSEEE
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcCC-ceEEEe
Confidence 4679999999754 578888 88 7743 24 3688999999999998764 3445555654 578777
Q ss_pred eecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHHHHHhcCcchHHHHHHHHHHH
Q 039043 384 EKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAK-WREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 384 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
+.. +.+++.++|.++++| ++.+++..+ ..+.+.+.-+..+.++.+++.++
T Consensus 407 ~~~------d~~~la~~i~~ll~~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~ 457 (499)
T 2r60_A 407 DPE------DPEDIARGLLKAFES------EETWSAYQEKGKQRVEERYTWQETARGYLEVIQ 457 (499)
T ss_dssp CTT------CHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHH
T ss_pred CCC------CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 764 889999999999998 543333222 22223322344445555544443
No 36
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.04 E-value=1.1e-09 Score=105.84 Aligned_cols=132 Identities=10% Similarity=0.045 Sum_probs=80.7
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCccccCCChhHHHhcC-CCeEEEeccchh---h
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELS---GLPFLVALKPPVGHDTIESALPEGFEERVK-GRGFIHGGWVQQ---Q 327 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~~~pq---~ 327 (449)
++++++++.|...... +.+..++++++.. ..++.+.++.+.. ..+-+.+..... .+++.+.+++++ .
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~~~g~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 277 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVYPVHMN-----PVVRETANDILGDYGRIHLIEPLDVIDFH 277 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEEECCSC-----HHHHHHHHHHHTTCTTEEEECCCCHHHHH
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEEeCCCC-----HHHHHHHHHHhhccCCEEEeCCCCHHHHH
Confidence 3557777787654322 3345566665432 1233333333211 001111111112 258888676654 4
Q ss_pred hhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 328 LILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 328 ~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
++++.+++ +|+.+| +.+.||+++|+|+|+....+..+. +.+. |.|..++. ++++|.++|.++++|
T Consensus 278 ~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~~e----~v~~-g~g~~v~~-------d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 278 NVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTERPE----GIEA-GTLKLAGT-------DEETIFSLADELLSD 342 (375)
T ss_dssp HHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSCHH----HHHT-TSEEECCS-------CHHHHHHHHHHHHHC
T ss_pred HHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCCce----eecC-CceEEcCC-------CHHHHHHHHHHHHhC
Confidence 78889999 999874 568899999999999854333322 3456 88876642 679999999999998
No 37
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.98 E-value=1.3e-08 Score=98.55 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=83.8
Q ss_pred CeEEEEEeCCcccCC-HHHHHHHHHHHHhC----CCCEEEEEcCCCCCCccccCCChhHHHh---c-CCCeEEEeccc--
Q 039043 256 KSLIFCAFGSECVLN-KEQFQELVLGFELS----GLPFLVALKPPVGHDTIESALPEGFEER---V-KGRGFIHGGWV-- 324 (449)
Q Consensus 256 k~~v~vs~GS~~~~~-~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~lp~~~~~~---~-~~~~~~~~~~~-- 324 (449)
++.++++.|...... .+.+..++++++.. +.++++..+.. +-+.+... . ..+++.+.+.+
T Consensus 203 ~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~---------~~~~l~~~~~~~~~~~~v~l~~~lg~ 273 (385)
T 4hwg_A 203 KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPR---------TKKRLEDLEGFKELGDKIRFLPAFSF 273 (385)
T ss_dssp TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHH---------HHHHHHTSGGGGGTGGGEEECCCCCH
T ss_pred CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChH---------HHHHHHHHHHHhcCCCCEEEEcCCCH
Confidence 568899888764433 25566777776543 56677765321 00001100 0 12478876655
Q ss_pred -hhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 325 -QQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 325 -pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
+...+++++++ +|+-.|. .+.||.++|+|+|+++...+.+. ..+. |.++.+. .++++|.+++.+
T Consensus 274 ~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~e----~v~~-G~~~lv~-------~d~~~i~~ai~~ 338 (385)
T 4hwg_A 274 TDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERPE----GMDA-GTLIMSG-------FKAERVLQAVKT 338 (385)
T ss_dssp HHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCTH----HHHH-TCCEECC-------SSHHHHHHHHHH
T ss_pred HHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccchh----hhhc-CceEEcC-------CCHHHHHHHHHH
Confidence 44579999999 9999876 46999999999999987655332 2456 8775553 378999999999
Q ss_pred HhcC
Q 039043 404 VIDD 407 (449)
Q Consensus 404 ll~~ 407 (449)
+++|
T Consensus 339 ll~d 342 (385)
T 4hwg_A 339 ITEE 342 (385)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9987
No 38
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.85 E-value=1.3e-07 Score=90.01 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=79.3
Q ss_pred EEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhh---hhhcCCCcc
Q 039043 260 FCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQ---LILKHPSVG 336 (449)
Q Consensus 260 ~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~---~lL~~~~~~ 336 (449)
++..|+.. ..+.+..++++++..+.+++++ |.+.. ...+ ..+..... +++.+.+|+++. ++++.+++
T Consensus 165 i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~-G~g~~----~~~l-~~~~~~~~-~~v~~~g~~~~~~l~~~~~~adv- 234 (342)
T 2iuy_A 165 LLFMGRVS--PHKGALEAAAFAHACGRRLVLA-GPAWE----PEYF-DEITRRYG-STVEPIGEVGGERRLDLLASAHA- 234 (342)
T ss_dssp EEEESCCC--GGGTHHHHHHHHHHHTCCEEEE-SCCCC----HHHH-HHHHHHHT-TTEEECCCCCHHHHHHHHHHCSE-
T ss_pred EEEEeccc--cccCHHHHHHHHHhcCcEEEEE-eCccc----HHHH-HHHHHHhC-CCEEEeccCCHHHHHHHHHhCCE-
Confidence 44457654 3345666777776666665554 44311 1111 11112222 689999999875 68888999
Q ss_pred ceec-------------cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHh--hhcceeEeeecCCCCcccHHHHHHH
Q 039043 337 CFVT-------------HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGE--ELKVGVEVEKGDEDGLFTRDGVCKA 400 (449)
Q Consensus 337 ~~I~-------------HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~~G~G~~~~~~~~~~~~~~~~l~~~ 400 (449)
+|. +-|+ +++.||+++|+|+|+... ......+++ - +.|..++. +.+++.++
T Consensus 235 -~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~-~~g~~~~~-------d~~~l~~~ 301 (342)
T 2iuy_A 235 -VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGE-VVGYGTDF-------APDEARRT 301 (342)
T ss_dssp -EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEE-ECCSSSCC-------CHHHHHHH
T ss_pred -EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCC-CceEEcCC-------CHHHHHHH
Confidence 663 2333 679999999999999875 345566665 4 55554432 67899999
Q ss_pred HHHHhc
Q 039043 401 VKAVID 406 (449)
Q Consensus 401 i~~ll~ 406 (449)
|.++++
T Consensus 302 i~~l~~ 307 (342)
T 2iuy_A 302 LAGLPA 307 (342)
T ss_dssp HHTSCC
T ss_pred HHHHHH
Confidence 999876
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.84 E-value=3.1e-07 Score=89.89 Aligned_cols=112 Identities=11% Similarity=0.054 Sum_probs=77.6
Q ss_pred CCeEEEeccch---h---hhhhcCCCccceeccC----CchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 315 GRGFIHGGWVQ---Q---QLILKHPSVGCFVTHC----GSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 315 ~~~~~~~~~~p---q---~~lL~~~~~~~~I~Hg----G~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
.+++.+.+|++ + .++++.+++ +|.-. ..+++.||+++|+|+|+.+. ..+...+++. +.|..++
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~-~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDG-ETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBT-TTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecC-CCeEEEC
Confidence 46899888776 2 368888998 77654 45689999999999999765 3455666665 6776664
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAK-WREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+.+++.++|.++++| ++.+++..+ ..+.+.+.-+..+.++.+++.+++.
T Consensus 365 --------d~~~la~~i~~ll~~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 365 --------DANEAVEVVLYLLKH------PEVSKEMGAKAKERVRKNFIITKHMERYLDILNSL 414 (416)
T ss_dssp --------SHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC
T ss_pred --------CHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 467899999999998 554433322 2233333445666777777777654
No 40
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.81 E-value=3.1e-07 Score=96.59 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=55.8
Q ss_pred CCeEEEec----cchhhhhhc----CCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeE
Q 039043 315 GRGFIHGG----WVQQQLILK----HPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVE 382 (449)
Q Consensus 315 ~~~~~~~~----~~pq~~lL~----~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 382 (449)
.++|.+.+ ++|+.++.. .+++ ||.- |-..++.||+++|+|+|+. |-......+++. +.|..
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg-~~Gll 711 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHG-KSGFH 711 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBT-TTBEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccC-CcEEE
Confidence 46888877 555555544 4667 7743 3346899999999999996 444555666666 67887
Q ss_pred eeecCCCCcccHHHHHHHHHHHh
Q 039043 383 VEKGDEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~i~~ll 405 (449)
++.. ++++++++|.+++
T Consensus 712 v~p~------D~e~LA~aI~~lL 728 (816)
T 3s28_A 712 IDPY------HGDQAADTLADFF 728 (816)
T ss_dssp ECTT------SHHHHHHHHHHHH
T ss_pred eCCC------CHHHHHHHHHHHH
Confidence 7764 7899999997776
No 41
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.56 E-value=8.5e-06 Score=79.47 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=72.4
Q ss_pred EEEeccchhh---hhhcCCCccceec----cCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcc-----------
Q 039043 318 FIHGGWVQQQ---LILKHPSVGCFVT----HCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKV----------- 379 (449)
Q Consensus 318 ~~~~~~~pq~---~lL~~~~~~~~I~----HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~----------- 379 (449)
+.+.+|+|+. ++++.+++ +|. -|...++.||+++|+|+|+.... .....+.+. ..
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~~----g~~e~v~~~-~~~~i~~~~~~~~ 328 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAVG----GADDYFSGD-CVYKIKPSAWISV 328 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECCH----HHHHHSCTT-TSEEECCCEEEEC
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCCC----ChHHHHccC-ccccccccccccc
Confidence 7788999853 57888998 764 23345899999999999996543 334444332 22
Q ss_pred ----ee--EeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHhc
Q 039043 380 ----GV--EVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE-FLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 380 ----G~--~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
|. .+... +.+++.++| ++++| ++.+++..+-+. .+.+.-+-++.++.+++.+++.
T Consensus 329 ~~~~G~~gl~~~~------d~~~la~~i-~l~~~------~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 390 (413)
T 3oy2_A 329 DDRDGIGGIEGII------DVDDLVEAF-TFFKD------EKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSL 390 (413)
T ss_dssp TTTCSSCCEEEEC------CHHHHHHHH-HHTTS------HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred ccccCcceeeCCC------CHHHHHHHH-HHhcC------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55 55553 899999999 99998 665444433333 3334445666666666666543
No 42
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.55 E-value=1e-05 Score=80.83 Aligned_cols=161 Identities=14% Similarity=0.061 Sum_probs=89.3
Q ss_pred EEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHh--cCCCeEE-Eeccchhh--hhhc
Q 039043 258 LIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEER--VKGRGFI-HGGWVQQQ--LILK 331 (449)
Q Consensus 258 ~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~-~~~~~pq~--~lL~ 331 (449)
.+++..|.... ...+.+...+..+...+.+++++ |.+.. ..-+.+... ....++. +.++.... ++++
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~iv-G~g~~------~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 364 (485)
T 1rzu_A 292 PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVL-GAGDV------ALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA 364 (485)
T ss_dssp CEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEE-ECBCH------HHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH
T ss_pred eEEEEEccCccccCHHHHHHHHHHHHhcCceEEEE-eCCch------HHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHh
Confidence 46667787764 23344444444443335554444 43310 001112111 1125776 67774332 6889
Q ss_pred CCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHh---------hhcceeEeeecCCCCcccHHHHH
Q 039043 332 HPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGE---------ELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 332 ~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~---------~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
.+++ +|.- |-..++.||+++|+|+|+.... .....+++ . +.|..++. -+.++++
T Consensus 365 ~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~g----g~~e~v~~~~~~~~~~~~-~~G~l~~~------~d~~~la 431 (485)
T 1rzu_A 365 GCDA--IIIPSRFEPCGLTQLYALRYGCIPVVARTG----GLADTVIDANHAALASKA-ATGVQFSP------VTLDGLK 431 (485)
T ss_dssp HCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESSH----HHHHHCCBCCHHHHHTTC-CCBEEESS------CSHHHHH
T ss_pred cCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCCC----ChhheecccccccccccC-CcceEeCC------CCHHHHH
Confidence 9999 7743 3346899999999999997652 33333332 1 25666654 3889999
Q ss_pred HHHHHHh---cCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 399 KAVKAVI---DDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 399 ~~i~~ll---~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
++|.+++ +| ++.+++..+-+. ++.-+-++.++.+++.+++
T Consensus 432 ~~i~~ll~~~~~------~~~~~~~~~~~~--~~~fs~~~~~~~~~~~y~~ 474 (485)
T 1rzu_A 432 QAIRRTVRYYHD------PKLWTQMQKLGM--KSDVSWEKSAGLYAALYSQ 474 (485)
T ss_dssp HHHHHHHHHHTC------HHHHHHHHHHHH--TCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC------HHHHHHHHHHHH--HHhCChHHHHHHHHHHHHH
Confidence 9999999 66 544433322221 1334445556666665554
No 43
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.55 E-value=1.1e-05 Score=80.54 Aligned_cols=112 Identities=7% Similarity=-0.058 Sum_probs=70.0
Q ss_pred CeEE-Eeccchh--hhhhcCCCccceecc----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhh--------cce
Q 039043 316 RGFI-HGGWVQQ--QLILKHPSVGCFVTH----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEEL--------KVG 380 (449)
Q Consensus 316 ~~~~-~~~~~pq--~~lL~~~~~~~~I~H----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~--------G~G 380 (449)
.++. +.++... .++++.+++ +|.- |..+++.||+++|+|+|+.... .....+.+.. +.|
T Consensus 347 ~~v~~~~g~~~~~~~~~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~g----g~~e~v~~~~~~~~~~~~~~G 420 (485)
T 2qzs_A 347 GQVGVQIGYHEAFSHRIMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRTG----GLADTVSDCSLENLADGVASG 420 (485)
T ss_dssp TTEEEEESCCHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESSH----HHHHHCCBCCHHHHHTTCCCB
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCCC----CccceeccCccccccccccce
Confidence 5675 7777443 268899999 7743 3346888999999999997642 3333343200 257
Q ss_pred eEeeecCCCCcccHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 381 VEVEKGDEDGLFTRDGVCKAVKAVI---DDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 381 ~~~~~~~~~~~~~~~~l~~~i~~ll---~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
..++.. ++++++++|.+++ +| ++.+++..+-+. .+.-+-.+.++.+++.+++.
T Consensus 421 ~l~~~~------d~~~la~~i~~ll~~~~~------~~~~~~~~~~~~--~~~fs~~~~~~~~~~ly~~~ 476 (485)
T 2qzs_A 421 FVFEDS------NAWSLLRAIRRAFVLWSR------PSLWRFVQRQAM--AMDFSWQVAAKSYRELYYRL 476 (485)
T ss_dssp EEECSS------SHHHHHHHHHHHHHHHTS------HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHH
T ss_pred EEECCC------CHHHHHHHHHHHHHHcCC------HHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHh
Confidence 666653 8999999999999 66 544433322221 13444555666666665543
No 44
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.44 E-value=8.8e-07 Score=75.81 Aligned_cols=129 Identities=10% Similarity=-0.029 Sum_probs=85.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHH--HhcCCCeEEEeccchh---hhhhc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFE--ERVKGRGFIHGGWVQQ---QLILK 331 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~~~~~pq---~~lL~ 331 (449)
.+++..|+.. ....+..++++++.. +.+++++ +.+.. ...+-.-.. .....+++.+.+|+++ .++++
T Consensus 24 ~~i~~~G~~~--~~Kg~~~li~a~~~l~~~~l~i~-G~~~~----~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 96 (177)
T 2f9f_A 24 DFWLSVNRIY--PEKRIELQLEVFKKLQDEKLYIV-GWFSK----GDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYS 96 (177)
T ss_dssp SCEEEECCSS--GGGTHHHHHHHHHHCTTSCEEEE-BCCCT----TSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHH
T ss_pred CEEEEEeccc--cccCHHHHHHHHHhCCCcEEEEE-ecCcc----HHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHH
Confidence 3445567665 334566677777766 4555554 44321 111111111 1122458999999997 46888
Q ss_pred CCCccceec---cCCc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 332 HPSVGCFVT---HCGS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 332 ~~~~~~~I~---HgG~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+++ +|. +.|+ .++.||+++|+|+|+... ..+...+++. +.|..+ . -+.+++.++|.++++|
T Consensus 97 ~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~--~-----~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 97 RCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINE-KTGYLV--N-----ADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBT-TTEEEE--C-----SCHHHHHHHHHHHHHC
T ss_pred hCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCC-CccEEe--C-----CCHHHHHHHHHHHHhC
Confidence 9999 776 3455 489999999999999754 4556666666 788777 3 4899999999999988
No 45
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.41 E-value=2.4e-05 Score=75.38 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=69.2
Q ss_pred eEEEeccchh-hhhhcCCCccceecc-----CCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCC
Q 039043 317 GFIHGGWVQQ-QLILKHPSVGCFVTH-----CGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDG 390 (449)
Q Consensus 317 ~~~~~~~~pq-~~lL~~~~~~~~I~H-----gG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 390 (449)
++++.++... ..+++.+++ ++.- +|..++.||+++|+|+|+-|...+.+.....+.+. |.++.+ .
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~--~---- 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEV--K---- 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEEC--C----
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHC-CCEEEe--C----
Confidence 4666665544 478999998 6642 24478999999999999877777777766666556 776543 2
Q ss_pred cccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 039043 391 LFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREF 426 (449)
Q Consensus 391 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~ 426 (449)
++++|.++|.++++| +...+|.+++++..+.
T Consensus 332 --d~~~La~ai~~ll~d---~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 332 --NETELVTKLTELLSV---KKEIKVEEKSREIKGC 362 (374)
T ss_dssp --SHHHHHHHHHHHHHS---CCCCCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHh
Confidence 678999999999975 2225677777766554
No 46
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.15 E-value=0.00014 Score=70.93 Aligned_cols=73 Identities=14% Similarity=0.044 Sum_probs=57.5
Q ss_pred CeEEEeccchhh---hhhcCCCccceec---cCCc-hhHHHHH-------hhCCcEeccccccchhhHHHHHHhhhccee
Q 039043 316 RGFIHGGWVQQQ---LILKHPSVGCFVT---HCGS-GSLSEAM-------VNECQLVLLPNVGDQIINARLMGEELKVGV 381 (449)
Q Consensus 316 ~~~~~~~~~pq~---~lL~~~~~~~~I~---HgG~-gs~~eal-------~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 381 (449)
++|.+.+++|+. ++++.+++ +|. +-|+ +++.||+ ++|+|+|+... +.+. ..|.
T Consensus 265 ~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~-~~G~ 331 (406)
T 2hy7_A 265 DNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGP-YKSR 331 (406)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCS-CSSE
T ss_pred CCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccC-cceE
Confidence 489999999864 57888998 664 3344 5788999 99999999765 5554 5677
Q ss_pred E-eeecCCCCcccHHHHHHHHHHHhcC
Q 039043 382 E-VEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 382 ~-~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
. ++.. ++++|+++|.+++++
T Consensus 332 l~v~~~------d~~~la~ai~~ll~~ 352 (406)
T 2hy7_A 332 FGYTPG------NADSVIAAITQALEA 352 (406)
T ss_dssp EEECTT------CHHHHHHHHHHHHHC
T ss_pred EEeCCC------CHHHHHHHHHHHHhC
Confidence 6 6654 899999999999987
No 47
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.72 E-value=0.001 Score=67.52 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=74.1
Q ss_pred CeEEEeccchh---hhhhcCCCccceec---cCCchhHHHHHhhCCcEeccccccc-hhhHHHHHHhhhcceeEeeecCC
Q 039043 316 RGFIHGGWVQQ---QLILKHPSVGCFVT---HCGSGSLSEAMVNECQLVLLPNVGD-QIINARLMGEELKVGVEVEKGDE 388 (449)
Q Consensus 316 ~~~~~~~~~pq---~~lL~~~~~~~~I~---HgG~gs~~eal~~GvP~l~~P~~~D-Q~~na~~v~~~~G~G~~~~~~~~ 388 (449)
++|++.+++|+ .++++.+++ ||. .|+.+++.||+++|+|+|++|...= -..-+..+... |+...+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~-g~~e~v~---- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHL-GLDEMNV---- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHH-TCGGGBC----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHC-CChhhhc----
Confidence 68999999974 367888998 762 3566789999999999999875311 11123455555 7765443
Q ss_pred CCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-HH--HhcCcchHHHHHHHHHHH
Q 039043 389 DGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWRE-FL--RSERLENSYLDGFVQKLH 445 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~-~~--~~~~~~~~~~~~~~~~~~ 445 (449)
-+++++.+++.++++| ++.+++..+-+. .+ ...-+..+.++.+++.++
T Consensus 507 ---~~~~~la~~i~~l~~~------~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~ 557 (568)
T 2vsy_A 507 ---ADDAAFVAKAVALASD------PAALTALHARVDVLRRASGVFHMDGFADDFGALLQ 557 (568)
T ss_dssp ---SSHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHhcC------HHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Confidence 2789999999999998 655544433322 22 233444555555554443
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.68 E-value=0.00085 Score=70.15 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=95.6
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHH-hcCCCeEEEeccchhh---hhh
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEE-RVKGRGFIHGGWVQQQ---LIL 330 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~pq~---~lL 330 (449)
+..++|.||.+....+++.+..+.+-|+..+.-++|........ ...+-.-+.. -+..+.+++.+..|.. ..+
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~---~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~ 597 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG---EPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRG 597 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGG---HHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHG
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHH---HHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHh
Confidence 34599999999999999999999999999988888887654211 1111111111 1334678888888755 455
Q ss_pred cCCCccceec---cCCchhHHHHHhhCCcEeccccc-cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFVT---HCGSGSLSEAMVNECQLVLLPNV-GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I~---HgG~gs~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+|+ ++- .+|.+|++|||.+|||+|.++-. .=-..-+..+..+ |+...+-. +.++-.+.-.++-+
T Consensus 598 ~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~-gl~e~ia~-------~~~~Y~~~a~~la~ 667 (723)
T 4gyw_A 598 QLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCL-GCLELIAK-------NRQEYEDIAVKLGT 667 (723)
T ss_dssp GGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHH-TCGGGBCS-------SHHHHHHHHHHHHH
T ss_pred CCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHc-CCcccccC-------CHHHHHHHHHHHhc
Confidence 56777 765 89999999999999999999952 2334445555555 87755432 56665555556666
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
|
T Consensus 668 d 668 (723)
T 4gyw_A 668 D 668 (723)
T ss_dssp C
T ss_pred C
Confidence 6
No 49
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.63 E-value=0.00031 Score=58.71 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=79.9
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCC--CCE-EEEEcCCCCCCccccCCChhHHHhc--CCCeEEEeccchhh---h
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSG--LPF-LVALKPPVGHDTIESALPEGFEERV--KGRGFIHGGWVQQQ---L 328 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~-i~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~~~pq~---~ 328 (449)
+++++..|+... ...+..++++++... .++ ++.+|.+.. .+.+.... ...++.+ +|+|+. +
T Consensus 2 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~--------~~~~~~~~~~~~~~v~~-g~~~~~~~~~ 70 (166)
T 3qhp_A 2 PFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGKGPD--------EKKIKLLAQKLGVKAEF-GFVNSNELLE 70 (166)
T ss_dssp CEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECCSTT--------HHHHHHHHHHHTCEEEC-CCCCHHHHHH
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeCCcc--------HHHHHHHHHHcCCeEEE-eecCHHHHHH
Confidence 467777787753 344566666666543 123 333443211 12222111 1227788 999864 5
Q ss_pred hhcCCCccceec----cCCchhHHHHHhhCC-cEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHH
Q 039043 329 ILKHPSVGCFVT----HCGSGSLSEAMVNEC-QLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKA 403 (449)
Q Consensus 329 lL~~~~~~~~I~----HgG~gs~~eal~~Gv-P~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ 403 (449)
+++.+++ +|. -|...++.||+++|+ |+|+....+. ....+.+. +. .+.. -+.+++.++|.+
T Consensus 71 ~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~---~~~~~~~~-~~--~~~~------~~~~~l~~~i~~ 136 (166)
T 3qhp_A 71 ILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLSA---TRQFALDE-RS--LFEP------NNAKDLSAKIDW 136 (166)
T ss_dssp HHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTCG---GGGGCSSG-GG--EECT------TCHHHHHHHHHH
T ss_pred HHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCCc---hhhhccCC-ce--EEcC------CCHHHHHHHHHH
Confidence 7888998 775 233468999999996 9999432211 11122222 32 3333 389999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHH
Q 039043 404 VIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 404 ll~~~~~~~~~~~~~~a~~l~ 424 (449)
+++| .+...++.+++++..
T Consensus 137 l~~~--~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 137 WLEN--KLERERMQNEYAKSA 155 (166)
T ss_dssp HHHC--HHHHHHHHHHHHHHH
T ss_pred HHhC--HHHHHHHHHHHHHHH
Confidence 9998 122233444444444
No 50
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.62 E-value=0.00074 Score=68.05 Aligned_cols=140 Identities=11% Similarity=0.021 Sum_probs=90.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEE--EcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhh---hh
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVA--LKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQL---IL 330 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~--~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~---lL 330 (449)
..++|.+|++.....++.+......++..+..++|. .+..... ...+-..+....-.+.+++.+.+|+.+ .+
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~---~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y 516 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI---THPYVERFIKSYLGDSATAHPHSPYHQYLRIL 516 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG---GHHHHHHHHHHHHGGGEEEECCCCHHHHHHHH
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh---hHHHHHHHHHcCCCccEEEcCCCCHHHHHHHH
Confidence 359999999988888999998888888877777764 3422110 001111111111124677888888654 55
Q ss_pred cCCCccceec---cCCchhHHHHHhhCCcEecccccc-chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 331 KHPSVGCFVT---HCGSGSLSEAMVNECQLVLLPNVG-DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 331 ~~~~~~~~I~---HgG~gs~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+|+ |+. .+|.+|++|||++|||+|+++-.. --..-+..+... |+...+-. -+.++..+...++.+
T Consensus 517 ~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~-GLpE~LIA------~d~eeYv~~Av~La~ 587 (631)
T 3q3e_A 517 HNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRL-GLPEWLIA------NTVDEYVERAVRLAE 587 (631)
T ss_dssp HTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHT-TCCGGGEE------SSHHHHHHHHHHHHH
T ss_pred hcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhc-CCCcceec------CCHHHHHHHHHHHhC
Confidence 78888 653 378899999999999999988532 122223334444 66543222 267888888889888
Q ss_pred C
Q 039043 407 D 407 (449)
Q Consensus 407 ~ 407 (449)
|
T Consensus 588 D 588 (631)
T 3q3e_A 588 N 588 (631)
T ss_dssp C
T ss_pred C
Confidence 8
No 51
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.46 E-value=0.0015 Score=56.24 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=59.5
Q ss_pred eEEE-eccchh---hhhhcCCCccceeccC---C-chhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCC
Q 039043 317 GFIH-GGWVQQ---QLILKHPSVGCFVTHC---G-SGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDE 388 (449)
Q Consensus 317 ~~~~-~~~~pq---~~lL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 388 (449)
++.+ .+++++ ..+++.+++ +|.-. | ..++.||+++|+|+|+... ......+ +. +.|..++..
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~~-~~-~~g~~~~~~-- 165 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-TN-ETGILVKAG-- 165 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESC----HHHHHHC-CT-TTCEEECTT--
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCC----CChHHHc-CC-CceEEecCC--
Confidence 7888 999984 368889999 77433 3 4688999999999998754 3444555 55 778777653
Q ss_pred CCcccHHHHHHHHHHHhc-C
Q 039043 389 DGLFTRDGVCKAVKAVID-D 407 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~-~ 407 (449)
+.+++.++|.++++ |
T Consensus 166 ----~~~~l~~~i~~l~~~~ 181 (200)
T 2bfw_A 166 ----DPGELANAILKALELS 181 (200)
T ss_dssp ----CHHHHHHHHHHHHHCC
T ss_pred ----CHHHHHHHHHHHHhcC
Confidence 89999999999999 8
No 52
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.15 E-value=0.0008 Score=63.58 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred eEEEeccchhhhh---hcCCCccceeccCCc---------hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEee
Q 039043 317 GFIHGGWVQQQLI---LKHPSVGCFVTHCGS---------GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 317 ~~~~~~~~pq~~l---L~~~~~~~~I~HgG~---------gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
|+.+.+|+|+.++ |+.++.+++.+-+.+ +-+.|+|++|+|+|+.+ ...++..+++. |+|..++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~-~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENN-GLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHH-TCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhC-CeEEEeC
Confidence 8999999998764 555666555533332 34789999999999755 45778888998 9998774
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQK 443 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 443 (449)
+.+++.+++.++.. +...+|++++++.++.++.+--.++++.+.+..
T Consensus 290 --------~~~e~~~~i~~l~~----~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~ 336 (339)
T 3rhz_A 290 --------DVEEAIMKVKNVNE----DEYIELVKNVRSFNPILRKGFFTRRLLTESVFQ 336 (339)
T ss_dssp --------SHHHHHHHHHHCCH----HHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35788888888653 345889999999999999777777766655543
No 53
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.63 E-value=0.03 Score=53.03 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=66.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCEE-EEEecCCCCCCCCCCCCCCCCCCCCcHH
Q 039043 2 YPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLIT-FIPVSVPRVDGLPPGAETTNDVPFPLHP 78 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 78 (449)
+-..+.|++.-+..+.+.|+++ +.+|++++.+.+.+.++... . ++ ++.++ .. ....
T Consensus 14 i~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p---~-vd~vi~~~----~~-------------~~~~ 72 (349)
T 3tov_A 14 TFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNP---N-IDELIVVD----KK-------------GRHN 72 (349)
T ss_dssp ECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCT---T-CSEEEEEC----CS-------------SHHH
T ss_pred EecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCC---C-ccEEEEeC----cc-------------cccc
Confidence 3456789999999999999987 89999999999998887652 2 43 54454 00 0000
Q ss_pred HHHHHHhhcHHHHHHHHhhcCC-CEEEEcC-CCChHHHHHHhCCceEEE
Q 039043 79 LLMTAMDLTEPAIESVLRHLKP-DFVFFDF-THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 79 ~~~~~~~~~~~~~~~ll~~~~p-D~vI~D~-~~~~~~~A~~~giP~v~~ 125 (449)
.+. ....+...+++.++ |++|.=. ..-...++...|+|..+-
T Consensus 73 ~~~-----~~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~riG 116 (349)
T 3tov_A 73 SIS-----GLNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITTG 116 (349)
T ss_dssp HHH-----HHHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEEE
T ss_pred cHH-----HHHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEEe
Confidence 111 11234455677789 9999755 555667888899998654
No 54
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.08 E-value=0.049 Score=51.21 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=62.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCCCCCCCCE-EEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 3 PWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPSNLHRNLI-TFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~g~~~~~i-~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
...+.|++.-+..+.++|+++ +.+|++++.+.+.+.++... . + +++.++. .. ... .
T Consensus 7 ~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~p---~-i~~v~~~~~------~~-------~~~----~ 65 (348)
T 1psw_A 7 GPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMP---E-VNEAIPMPL------GH-------GAL----E 65 (348)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCT---T-EEEEEEC------------------------C
T ss_pred eccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCC---c-cCEEEEecC------Cc-------ccc----c
Confidence 445669998899999999987 99999999998887776542 2 4 3444431 00 000 0
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEE
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~ 125 (449)
+ .....+...+++.++|++|.=. ..-...++...|+|..+.
T Consensus 66 ~-----~~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig 107 (348)
T 1psw_A 66 I-----GERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTG 107 (348)
T ss_dssp H-----HHHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEE
T ss_pred h-----HHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEec
Confidence 0 1123455667777899999433 555667888899998543
No 55
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=96.07 E-value=0.019 Score=55.75 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=57.2
Q ss_pred CeEEEeccchhh---hhhcCCCccceeccC---Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCC
Q 039043 316 RGFIHGGWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDE 388 (449)
Q Consensus 316 ~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 388 (449)
.++.+.+++|+. ++++.+++ ||.-. |. .++.||+++|+|+|+ -..+ ....+++- ..|..++..
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~~~-~~G~lv~~~-- 364 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSNWH-SNIVSLEQL-- 364 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGGTB-TTEEEESSC--
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhhcC-CCEEEeCCC--
Confidence 488899999764 57888999 77532 44 467999999999998 3222 12234443 468777654
Q ss_pred CCcccHHHHHHHHHHHhcC
Q 039043 389 DGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~~ 407 (449)
++++|+++|.++++|
T Consensus 365 ----d~~~la~ai~~ll~~ 379 (413)
T 2x0d_A 365 ----NPENIAETLVELCMS 379 (413)
T ss_dssp ----SHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHcC
Confidence 899999999999998
No 56
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=95.23 E-value=0.16 Score=51.07 Aligned_cols=85 Identities=13% Similarity=-0.042 Sum_probs=53.3
Q ss_pred CCeEEEeccchhh---hhhcCCCccceeccC---Cc-hhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC
Q 039043 315 GRGFIHGGWVQQQ---LILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD 387 (449)
Q Consensus 315 ~~~~~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 387 (449)
..++.+....+.. .+++.+++ ||.-. |+ .+++||+++|+|+|+.... .....|.+- .-|.......
T Consensus 381 ~~~v~~~~~~~~~~~~~~~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~g----G~~e~V~dg-~~G~~~~~~~ 453 (536)
T 3vue_A 381 PGKVRAVVKFNAPLAHLIMAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACASTG----GLVDTVIEG-KTGFHMGRLS 453 (536)
T ss_dssp TTTEEEECSCCHHHHHHHHHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSCT----HHHHHCCBT-TTEEECCCCC
T ss_pred CCceEEEEeccHHHHHHHHHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCCC----CchheeeCC-CCccccccCC
Confidence 3567666666553 47888898 77542 44 4889999999999986543 344444443 3443222111
Q ss_pred CCC----cccHHHHHHHHHHHhc
Q 039043 388 EDG----LFTRDGVCKAVKAVID 406 (449)
Q Consensus 388 ~~~----~~~~~~l~~~i~~ll~ 406 (449)
.++ ..+.++|.++|+++++
T Consensus 454 ~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 454 VDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp SCTTCCCHHHHHHHHHHHHHHHH
T ss_pred CceeEECCCCHHHHHHHHHHHHH
Confidence 000 1367889999998876
No 57
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=90.08 E-value=1.9 Score=42.43 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=70.0
Q ss_pred EE-Eeccchhh---hhhcCCCccceec---cCCch-hHHHHHhhCC-----cEeccccccchhhHHHHHHhhhcceeEee
Q 039043 318 FI-HGGWVQQQ---LILKHPSVGCFVT---HCGSG-SLSEAMVNEC-----QLVLLPNVGDQIINARLMGEELKVGVEVE 384 (449)
Q Consensus 318 ~~-~~~~~pq~---~lL~~~~~~~~I~---HgG~g-s~~eal~~Gv-----P~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 384 (449)
++ +.+++++. ++++.+++ ||. .=|+| ++.||+++|+ |+|+--..+--. .. .-|..++
T Consensus 333 v~~~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~-------~l-~~g~lv~ 402 (482)
T 1uqt_A 333 LYYLNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN-------EL-TSALIVN 402 (482)
T ss_dssp EEEECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGG-------TC-TTSEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHH-------Hh-CCeEEEC
Confidence 44 56778765 57778998 775 34665 7789999998 666654332111 11 2355566
Q ss_pred ecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhc
Q 039043 385 KGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHGL 447 (449)
Q Consensus 385 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 447 (449)
+. +.++++++|.++|++. + ..-+++.++..+.++. -+..+.++.+++.+++.
T Consensus 403 p~------d~~~lA~ai~~lL~~~--~--~~r~~~~~~~~~~v~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 PY------DRDEVAAALDRALTMS--L--AERISRHAEMLDVIVK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp TT------CHHHHHHHHHHHHTCC--H--HHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred CC------CHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 53 7899999999999851 1 2244455555555553 46777788888777653
No 58
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=89.27 E-value=0.11 Score=48.40 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=75.6
Q ss_pred CCeEEEEEeCCccc---CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEec--cchh-hh
Q 039043 255 SKSLIFCAFGSECV---LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGG--WVQQ-QL 328 (449)
Q Consensus 255 ~k~~v~vs~GS~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--~~pq-~~ 328 (449)
+++.|.+..||... .+.+.+.+++..|.+.+.++++..+... .....+.+.... +++.+.+ .+.+ .+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~-----e~~~~~~i~~~~--~~~~l~g~~sl~el~a 249 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH-----EEERAKRLAEGF--AYVEVLPKMSLEGVAR 249 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH-----HHHHHHHHHTTC--TTEEECCCCCHHHHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH-----HHHHHHHHHhhC--CcccccCCCCHHHHHH
Confidence 35577787776543 6678888888888666777665544321 001111111111 2333332 2344 47
Q ss_pred hhcCCCccceeccCCchhHHHHHhhCCcEecc--ccccchhhHHHHHHhhhcce-eEe-----eecCCCCcccHHHHHHH
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLL--PNVGDQIINARLMGEELKVG-VEV-----EKGDEDGLFTRDGVCKA 400 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~--P~~~DQ~~na~~v~~~~G~G-~~~-----~~~~~~~~~~~~~l~~~ 400 (449)
+++++++ +|+.= .|.++=|.+.|+|+|++ |..... ++- +|-. ..+ ...+ ++++++.++
T Consensus 250 li~~a~l--~I~~D-SG~~HlAaa~g~P~v~lfg~t~p~~--~~P-----~~~~~~~~~~~~~cm~~----I~~~~V~~~ 315 (326)
T 2gt1_A 250 VLAGAKF--VVSVD-TGLSHLTAALDRPNITVYGPTDPGL--IGG-----YGKNQMVCRAPGNELSQ----LTANAVKQF 315 (326)
T ss_dssp HHHTCSE--EEEES-SHHHHHHHHTTCCEEEEESSSCHHH--HCC-----CSSSEEEEECGGGCGGG----CCHHHHHHH
T ss_pred HHHhCCE--EEecC-CcHHHHHHHcCCCEEEEECCCChhh--cCC-----CCCCceEecCCcccccC----CCHHHHHHH
Confidence 9999999 99982 34455577799999988 432111 100 0111 111 1223 899999999
Q ss_pred HHHHhcC
Q 039043 401 VKAVIDD 407 (449)
Q Consensus 401 i~~ll~~ 407 (449)
++++|++
T Consensus 316 i~~~l~~ 322 (326)
T 2gt1_A 316 IEENAEK 322 (326)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
Confidence 9999986
No 59
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=87.40 E-value=2.1 Score=42.14 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=73.2
Q ss_pred eEEEeccchhh---hhhcCCCccceec---cCCchh-HHHHHhhC---CcEeccccccchhhHHHHHHhhhc-ceeEeee
Q 039043 317 GFIHGGWVQQQ---LILKHPSVGCFVT---HCGSGS-LSEAMVNE---CQLVLLPNVGDQIINARLMGEELK-VGVEVEK 385 (449)
Q Consensus 317 ~~~~~~~~pq~---~lL~~~~~~~~I~---HgG~gs-~~eal~~G---vP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~ 385 (449)
.|++...+|+. +++..+++ |+. .=|+|. ..|++++| .|+|+--+.+ . .+.+ | -|+.+++
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a---~~~l-~~~allVnP 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----A---AEVL-GEYCRSVNP 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----T---HHHH-GGGSEEECT
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----C---HHHh-CCCEEEECC
Confidence 47766777764 57777888 664 458875 57999996 5655543332 1 2222 3 4677776
Q ss_pred cCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHh
Q 039043 386 GDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLRSERLENSYLDGFVQKLHG 446 (449)
Q Consensus 386 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 446 (449)
. +.++++++|.++|++. + .+-+++.+++.+.+. ......-++.+++.|++
T Consensus 423 ~------D~~~lA~AI~~aL~m~--~--~er~~r~~~~~~~V~-~~d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 423 F------DLVEQAEAISAALAAG--P--RQRAEAAARRRDAAR-PWTLEAWVQAQLDGLAA 472 (496)
T ss_dssp T------BHHHHHHHHHHHHHCC--H--HHHHHHHHHHHHHHT-TCBHHHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHhh
Confidence 4 8999999999999851 1 355666677777766 45667777778777764
No 60
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=86.46 E-value=3.2 Score=42.42 Aligned_cols=44 Identities=9% Similarity=-0.023 Sum_probs=32.9
Q ss_pred EEEeccchh---------hhhhcCCCccceeccC---Cc-hhHHHHHhhCCcEeccccc
Q 039043 318 FIHGGWVQQ---------QLILKHPSVGCFVTHC---GS-GSLSEAMVNECQLVLLPNV 363 (449)
Q Consensus 318 ~~~~~~~pq---------~~lL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~l~~P~~ 363 (449)
+.+..|++. .++++.+++ ||.-. |+ .+.+||+++|+|+|+.-..
T Consensus 495 If~P~~L~~~d~lf~~d~~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 495 IFHPEFLNANNPILGLDYDEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp EECCSCCCTTCSSSCCCHHHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred EEeccccCCCCccchhHHHHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 455578765 357888999 77553 44 4888999999999986653
No 61
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=86.32 E-value=1.5 Score=38.84 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|.+.| +|+++.+...+.-+...-....++++..+.... ...... .-.... .-.+
T Consensus 16 Gi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~~-------~~~v~G-------TPaDCV---~lal 77 (251)
T 2wqk_A 16 GINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDF-------YTVIDG-------TPADCV---HLGY 77 (251)
T ss_dssp HHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTE-------EEETTC-------CHHHHH---HHHH
T ss_pred HHHHHHHHHHhCC-CEEEEeeCCCCcccccCcCCCCCceeEEeeccc-------eeecCC-------ChHHHH---hhhh
Confidence 3567899999998 599988887665554331111125555543100 000011 111221 1245
Q ss_pred HHHHhhcCCCEEEEc----------C----CCChHHHHHHhCCceEEEec
Q 039043 92 ESVLRHLKPDFVFFD----------F----THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D----------~----~~~~~~~A~~~giP~v~~~~ 127 (449)
..++.+.+||+||+. . +.+|..=|..+|||-|.++.
T Consensus 78 ~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~ 127 (251)
T 2wqk_A 78 RVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEc
Confidence 556777899999982 2 23445556688999999864
No 62
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=84.82 E-value=8.5 Score=31.95 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=67.5
Q ss_pred cccccccCCCCCeEEEEEeCC-cccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEecc
Q 039043 245 RWETLLGSFKSKSLIFCAFGS-ECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGW 323 (449)
Q Consensus 245 ~l~~~l~~~~~k~~v~vs~GS-~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 323 (449)
++-.+|.... ...||.|. .. .+.....+.-..+-+++-+++..+. ..+... -...+++.+
T Consensus 36 ~lg~~La~~g---~~lVsGGg~~G-----im~aa~~gAl~~gG~tigVlP~~~~------~~~~~~-----~~~~i~~~~ 96 (176)
T 2iz6_A 36 ELGKQIATHG---WILLTGGRSLG-----VMHEAMKGAKEAGGTTIGVLPGPDT------SEISDA-----VDIPIVTGL 96 (176)
T ss_dssp HHHHHHHHTT---CEEEEECSSSS-----HHHHHHHHHHHTTCCEEEEECC-----------CCTT-----CSEEEECCC
T ss_pred HHHHHHHHCC---CEEEECCCccC-----HhHHHHHHHHHcCCEEEEEeCchhh------hhhccC-----CceeEEcCC
Confidence 4445555432 55566665 44 2333444433455566666643211 111100 013445566
Q ss_pred chhh-hhhc-CCCccceeccCCchhHHH---HHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHH
Q 039043 324 VQQQ-LILK-HPSVGCFVTHCGSGSLSE---AMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 324 ~pq~-~lL~-~~~~~~~I~HgG~gs~~e---al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
.+.. .++. .++. .++--||.||+.| ++.+++|++.+|.|. .....+... -... +... -+++++.
T Consensus 97 ~~~Rk~~m~~~sda-~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~~~-~~~~-i~~~-----~~~~e~~ 165 (176)
T 2iz6_A 97 GSARDNINALSSNV-LVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFTSL-DAGL-VHVA-----ADVAGAI 165 (176)
T ss_dssp CSSSCCCCGGGCSE-EEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHHHH-CTTT-EEEE-----SSHHHHH
T ss_pred HHHHHHHHHHhCCE-EEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCChh-hcCe-EEEc-----CCHHHHH
Confidence 6653 3333 4443 4666789998765 577999999999853 111122221 1221 2233 2788888
Q ss_pred HHHHHHhcC
Q 039043 399 KAVKAVIDD 407 (449)
Q Consensus 399 ~~i~~ll~~ 407 (449)
+.+.+.+.+
T Consensus 166 ~~l~~~~~~ 174 (176)
T 2iz6_A 166 AAVKQLLAK 174 (176)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 887776653
No 63
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=79.63 E-value=2.7 Score=37.14 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHH
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPA 90 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (449)
--+.+|+++|++.| +|+++.++..+.-+...-....++++..+. .... ..... .-.... .-.
T Consensus 15 pGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit~~~pl~~~~~~----~~~~---~~v~G-------TPaDCV---~la 76 (251)
T 2phj_A 15 PGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKID----TDFY---TVIDG-------TPADCV---HLG 76 (251)
T ss_dssp HHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEE----TTEE---EETTC-------CHHHHH---HHH
T ss_pred HHHHHHHHHHHhcC-CEEEEecCCCccCCccceecCCCeEEEEec----CCCe---EEECC-------CHHHHH---HHH
Confidence 34678899999988 999999988776654432111226665554 1100 00111 111111 123
Q ss_pred HHHHHhhcCCCEEEEc----------C----CCChHHHHHHhCCceEEEec
Q 039043 91 IESVLRHLKPDFVFFD----------F----THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D----------~----~~~~~~~A~~~giP~v~~~~ 127 (449)
+..++...+||+||+. . +.+|..-|..+|||-|.++.
T Consensus 77 l~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 127 (251)
T 2phj_A 77 YRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSA 127 (251)
T ss_dssp HHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEc
Confidence 4445554689999973 2 22234455678999999865
No 64
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=75.64 E-value=20 Score=30.93 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=81.1
Q ss_pred cccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhh
Q 039043 249 LLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQL 328 (449)
Q Consensus 249 ~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~ 328 (449)
|++-. .++++.|..|.+. ...+..|...|..+.++-.. +.+.+.......++.+...--..+
T Consensus 26 fl~L~-gk~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~----------~~~~l~~l~~~~~i~~i~~~~~~~ 87 (223)
T 3dfz_A 26 MLDLK-GRSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPT----------VSAEINEWEAKGQLRVKRKKVGEE 87 (223)
T ss_dssp EECCT-TCCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSS----------CCHHHHHHHHTTSCEEECSCCCGG
T ss_pred EEEcC-CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCC----------CCHHHHHHHHcCCcEEEECCCCHh
Confidence 45543 4568888877554 55666677778887776432 212232222222343322222345
Q ss_pred hhcCCCccceeccCCchhHHHHHhhCCcEecccc-ccchhhHHH-----HHHhhhcceeEeeecCCCCcccHHHHHHHHH
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPN-VGDQIINAR-----LMGEELKVGVEVEKGDEDGLFTRDGVCKAVK 402 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~-~~DQ~~na~-----~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~ 402 (449)
-|..+++ +|.--|.-.+++.++.-.- ..+|. ..|.+..+. .+.+- ++-+.+..+..+| .-...|++.|+
T Consensus 88 dL~~adL--VIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~rg-~l~iaIST~G~sP-~la~~iR~~ie 162 (223)
T 3dfz_A 88 DLLNVFF--IVVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSRG-RLSLAISTDGASP-LLTKRIKEDLS 162 (223)
T ss_dssp GSSSCSE--EEECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEET-TEEEEEECTTSCH-HHHHHHHHHHH
T ss_pred HhCCCCE--EEECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEeC-CEEEEEECCCCCc-HHHHHHHHHHH
Confidence 5677777 8888888777666554322 33443 235444332 22222 3333333322011 23456788888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhc
Q 039043 403 AVIDDDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 403 ~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
+++.. ....+-+.+.++++.+++.
T Consensus 163 ~~lp~----~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 163 SNYDE----SYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp HHSCT----HHHHHHHHHHHHHHHHHHC
T ss_pred HHccH----HHHHHHHHHHHHHHHHHHH
Confidence 77753 2356777888888888754
No 65
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=74.98 E-value=4.3 Score=36.51 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|++.| +|+++.++..+.-+...-....++++..++.. +. ....... .-...... .+
T Consensus 15 Gi~aL~~aL~~~g-~V~VVAP~~~qSg~g~siTl~~pl~~~~~~~~---~~--~~~~v~G-------TPaDCV~l---al 78 (280)
T 1l5x_A 15 GLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC---GF--RAIATSG-------TPSDTVYL---AT 78 (280)
T ss_dssp HHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECS---SS--EEEEESS-------CHHHHHHH---HH
T ss_pred hHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC---CC--ceEEECC-------cHHHHHHH---HH
Confidence 3678899999988 99999998876665443111112555555410 00 0000011 11222211 23
Q ss_pred HHHHhhcCCCEEEE----------c-C----CCChHHHHHHhCCceEEEecc
Q 039043 92 ESVLRHLKPDFVFF----------D-F----THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 92 ~~ll~~~~pD~vI~----------D-~----~~~~~~~A~~~giP~v~~~~~ 128 (449)
..+ ..+||+||+ | . +.+|..-|..+|||.|.++..
T Consensus 79 ~~l--~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 79 FGL--GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp HHH--TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred hcC--CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 333 468999997 3 1 233344456789999998763
No 66
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=71.87 E-value=39 Score=27.54 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=79.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
||.|-|-+||.+ +....++....|+..|.++=+.+-+ ....|+.+.. |+.+.+ -...++
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~S-------aHR~p~~l~~-----------~~~~a~-~~g~~V 69 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVS-------AHRTPDYMFE-----------YAETAR-ERGLKV 69 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTSHHHHHH-----------HHHHTT-TTTCCE
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEe-------ccCCHHHHHH-----------HHHHHH-hCCCcE
Confidence 667888888886 7788888888899999886555543 2334443221 111000 011334
Q ss_pred cceeccCCchhHHH---HHhhCCcEeccccccc---hhhHHHHHHh--hhcceeE-eeecCCCCcccHHHHHHHHHHHhc
Q 039043 336 GCFVTHCGSGSLSE---AMVNECQLVLLPNVGD---QIINARLMGE--ELKVGVE-VEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 336 ~~~I~HgG~gs~~e---al~~GvP~l~~P~~~D---Q~~na~~v~~--~~G~G~~-~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
+|.=+|.-.-+- |-..-+|+|.+|.... -.+--..+.+ . |+.+. +...+ ....+..-++..|.. +.
T Consensus 70 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSivqmP~-GvpVatV~I~~-a~~~nAallAaqIla-~~ 144 (170)
T 1xmp_A 70 --IIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPG-GVPVATVAIGK-AGSTNAGLLAAQILG-SF 144 (170)
T ss_dssp --EEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHHCCCT-TCCCEECCSSH-HHHHHHHHHHHHHHH-TT
T ss_pred --EEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCeeEEEecCC-cchHHHHHHHHHHHc-cC
Confidence 777666533222 2334689999998542 1111222344 3 44321 11110 011566777777764 46
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh
Q 039043 407 DDHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
| ++++++.+.+++.+++
T Consensus 145 d------~~l~~kl~~~r~~~~~ 161 (170)
T 1xmp_A 145 H------DDIHDALELRREAIEK 161 (170)
T ss_dssp C------HHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHH
Confidence 6 8899998888888764
No 67
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=70.82 E-value=15 Score=35.76 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.+++++++.+||+||.+. ....+|+++|||++.+
T Consensus 366 ~le~~i~~~~pDllig~~--~~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAGQAQLVIGNS--HALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHHTCSEEEECT--THHHHHHHTTCCEEEC
T ss_pred HHHHHHHhcCCCEEEECh--hHHHHHHHcCCCEEEe
Confidence 477888899999999975 2467899999999854
No 68
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=70.26 E-value=18 Score=31.67 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEec
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVS 55 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p 55 (449)
-+.+|+++|++.| +|+++.++..+.-+...-....++++..++
T Consensus 15 Gi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~ 57 (244)
T 2e6c_A 15 GLWALAEAASQFG-EVFVAAPDTEQSAAGHAITIAHPVRAYPHP 57 (244)
T ss_dssp HHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCCCSSCBEEEECC
T ss_pred hHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEec
Confidence 3678899999888 899999988776655442111226676665
No 69
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.86 E-value=25 Score=29.65 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=54.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc------ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKA------ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFP 75 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~------~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~ 75 (449)
++-++.|-..-.+.+|-..+.+|.+|.|+..-.. ...+++.+ +++.... .++. . . ..
T Consensus 34 ~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~-----v~~~~~g----~gf~----~--~--~~ 96 (196)
T 1g5t_A 34 FTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-----VEFQVMA----TGFT----W--E--TQ 96 (196)
T ss_dssp EESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-----CEEEECC----TTCC----C--C--GG
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC-----cEEEEcc----cccc----c--C--CC
Confidence 4566788888888999999999999999954442 13345444 7777665 2221 0 0 00
Q ss_pred cHHHHHHHHhhcHHHHHHHHhhcCCCEEEEcC
Q 039043 76 LHPLLMTAMDLTEPAIESVLRHLKPDFVFFDF 107 (449)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ll~~~~pD~vI~D~ 107 (449)
-................+.+.+-++|+||.|-
T Consensus 97 ~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDE 128 (196)
T 1g5t_A 97 NREADTAACMAVWQHGKRMLADPLLDMVVLDE 128 (196)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCTTCSEEEEET
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 11112222333445556666666899999996
No 70
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=65.78 E-value=39 Score=27.73 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=78.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
+|.|-|-+||.+ +....++....|+..|.++=+.+-+ ....|+.+. .|+-.. --...++
T Consensus 7 ~~~V~IimgS~S--D~~v~~~a~~~L~~~gi~~ev~V~S-------aHR~p~~~~-----------~~~~~a-~~~g~~V 65 (174)
T 3lp6_A 7 RPRVGVIMGSDS--DWPVMADAAAALAEFDIPAEVRVVS-------AHRTPEAMF-----------SYARGA-AARGLEV 65 (174)
T ss_dssp CCSEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTCHHHHH-----------HHHHHH-HHHTCCE
T ss_pred CCeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEC-------CCCCHHHHH-----------HHHHHH-HhCCCCE
Confidence 445666778776 7778888888899999886555543 233444322 111110 0123345
Q ss_pred cceeccCCchhHH---HHHhhCCcEeccccccc---hhhHHHHHHhh-hcceeE-eeecCCCCcccHHHHHHHHHHHhcC
Q 039043 336 GCFVTHCGSGSLS---EAMVNECQLVLLPNVGD---QIINARLMGEE-LKVGVE-VEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 336 ~~~I~HgG~gs~~---eal~~GvP~l~~P~~~D---Q~~na~~v~~~-~G~G~~-~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+|.=+|.-.-+ =|-..-+|+|.+|...- -.+--..+.++ -|+.+. +... ...+...++..|..+ .|
T Consensus 66 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlS~vqmp~GvpVatV~I~---~~~nAa~lAa~Il~~-~d 139 (174)
T 3lp6_A 66 --IIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG---GAGNAGLLAVRMLGA-AN 139 (174)
T ss_dssp --EEEEEESSCCHHHHHHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTT---CHHHHHHHHHHHHHT-TC
T ss_pred --EEEecCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhCCCCCeeEEEEcC---cchHHHHHHHHHHhC-CC
Confidence 77766653222 22346689999997532 11112223332 032111 1111 126777777777664 56
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 039043 408 DHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.+++.+++
T Consensus 140 ------~~l~~kl~~~r~~~~~ 155 (174)
T 3lp6_A 140 ------PQLRARIVAFQDRLAD 155 (174)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 7888888888887764
No 71
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=64.39 E-value=14 Score=23.59 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 039043 413 GKEIKENHAKWREFLRSERLENSYLDGFVQKLH 445 (449)
Q Consensus 413 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 445 (449)
+.+|+.|...++.+++..||+...+..|..++.
T Consensus 4 waefkqrlaaiktrlqalggseaelaafekeia 36 (73)
T 2a3d_A 4 WAEFKQRLAAIKTRLQALGGSEAELAAFEKEIA 36 (73)
T ss_dssp HHHHHHHHHHHHHHHHHCSSGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 467888999999999888888887766665554
No 72
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=62.95 E-value=64 Score=26.63 Aligned_cols=143 Identities=11% Similarity=0.153 Sum_probs=79.2
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
++.|-|-+||.. +-...+.....|+..|.++-+.+-+ ....|+.+.. |+.+.+ -...++
T Consensus 21 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~S-------aHR~p~~l~~-----------~~~~a~-~~g~~V 79 (182)
T 1u11_A 21 APVVGIIMGSQS--DWETMRHADALLTELEIPHETLIVS-------AHRTPDRLAD-----------YARTAA-ERGLNV 79 (182)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTCHHHHHH-----------HHHHTT-TTTCCE
T ss_pred CCEEEEEECcHH--HHHHHHHHHHHHHHcCCCeEEEEEc-------ccCCHHHHHH-----------HHHHHH-hCCCcE
Confidence 345667778776 7788888888899999886555543 2334443221 111000 011344
Q ss_pred cceeccCCchhHH---HHHhhCCcEeccccccc---hhhHHHHHHh--hhcceeE-eeecCCCCcccHHHHHHHHHHHhc
Q 039043 336 GCFVTHCGSGSLS---EAMVNECQLVLLPNVGD---QIINARLMGE--ELKVGVE-VEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 336 ~~~I~HgG~gs~~---eal~~GvP~l~~P~~~D---Q~~na~~v~~--~~G~G~~-~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
+|.=+|.-.-+ =|-..-+|+|.+|.... -.+--..+.+ . |+.+. +...+ ....+..-++..|.. +.
T Consensus 80 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSivqmP~-GvpVatV~I~~-a~~~nAallAaqIla-~~ 154 (182)
T 1u11_A 80 --IIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPG-GVPVGTLAIGA-SGAKNAALLAASILA-LY 154 (182)
T ss_dssp --EEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCT-TSCCEECCSSH-HHHHHHHHHHHHHHG-GG
T ss_pred --EEEecCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHhcCCC-CCceEEEecCC-ccchHHHHHHHHHHc-cC
Confidence 77766643222 23345799999998542 1111223344 3 44421 11110 001566777766654 46
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhc
Q 039043 407 DDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
| ++++++.+..++..++.
T Consensus 155 d------~~l~~kL~~~r~~~~~~ 172 (182)
T 1u11_A 155 N------PALAARLETWRALQTAS 172 (182)
T ss_dssp C------HHHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHHH
Confidence 6 88999999988887743
No 73
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=62.76 E-value=5.9 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
-||-|-..-..+||..|+++|++|.++..+...
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 377888899999999999999999999988543
No 74
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=60.11 E-value=19 Score=31.64 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHH
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAI 91 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (449)
-+.+|+++|++.| +|+++.++..+.-+...-....++++..++.. ++. ....... .-..... -.+
T Consensus 15 Gi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~--~~~--~~~~v~G-------TPaDCV~---lal 79 (247)
T 1j9j_A 15 GIIVLAELLSEEH-EVFVVAPDKERSATGHSITIHVPLWMKKVFIS--ERV--VAYSTTG-------TPADCVK---LAY 79 (247)
T ss_dssp HHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCCSSCCCEEECCCS--SSE--EEEEESS-------CHHHHHH---HHH
T ss_pred hHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC--CCC--ceEEECC-------cHHHHHH---HHH
Confidence 3678899999888 89999998876665443111112455554310 000 0000000 1112211 123
Q ss_pred HHHHhhcCCCEEEEcC--------------CCChHHHHHHhCCceEEEec
Q 039043 92 ESVLRHLKPDFVFFDF--------------THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 92 ~~ll~~~~pD~vI~D~--------------~~~~~~~A~~~giP~v~~~~ 127 (449)
..++ ..+||+||+.. +.+|..-|..+|||.|.++.
T Consensus 80 ~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 80 NVVM-DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp HTTS-TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred Hhhc-cCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 3334 35899999731 22334445578999999865
No 75
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=57.68 E-value=79 Score=26.02 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=80.4
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
||.|-|-+||.+ +-..++.....|++.+.++-+.+-+- ...|+.+.. |+- -...-.+
T Consensus 22 kp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~SA-------HRtp~~l~~-----------~~~---~a~~~g~ 78 (181)
T 4b4k_A 22 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVSA-------HRTPDYMFE-----------YAE---TARERGL 78 (181)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT-------TTSHHHHHH-----------HHH---HTTTTTC
T ss_pred CccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEEcc-------ccChHHHHH-----------HHH---HHHhcCc
Confidence 567888899887 67788889999999998866555442 334443221 110 0111122
Q ss_pred cceeccCCchhHH---HHHhhCCcEecccccc---chhhHHHHHHhhhcceeEeeecCCC--CcccHHHHHHHHHHHhcC
Q 039043 336 GCFVTHCGSGSLS---EAMVNECQLVLLPNVG---DQIINARLMGEELKVGVEVEKGDED--GLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 336 ~~~I~HgG~gs~~---eal~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~~~~~~~~--~~~~~~~l~~~i~~ll~~ 407 (449)
+++|.=.|.-.-+ =|-..-+|+|.+|... +-.+.-..+.++ --|+-+-.-.-+ +-.+..-++..|-. +.|
T Consensus 79 ~ViIa~AG~aahLpGvvAa~T~~PVIGVPv~s~~l~G~DsLlSivQM-P~GvpVaTvaig~~ga~NAallA~qILa-~~d 156 (181)
T 4b4k_A 79 KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQM-PGGVPVATVAIGKAGSTNAGLLAAQILG-SFH 156 (181)
T ss_dssp CEEEEEECSSCCHHHHHHTTCCSCEEEEECCCTTTTTHHHHHHHHTC-CTTCCCEECCSSHHHHHHHHHHHHHHHT-TTC
T ss_pred eEEEEeccccccchhhHHhcCCCCEEEEecCCCCccchhhHHHHHhC-CCCCceEEEecCCccHHHHHHHHHHHHc-cCC
Confidence 2366655543222 2335668999999853 444555556655 556544432200 00233445555533 345
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 039043 408 DHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~ 428 (449)
++++++.+..++.++
T Consensus 157 ------~~l~~kl~~~r~~~~ 171 (181)
T 4b4k_A 157 ------DDIHDALELRREAIE 171 (181)
T ss_dssp ------HHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 788888877777665
No 76
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=57.53 E-value=52 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++-+..
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~ 192 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTDS 192 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTTS
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 799876 576 56678888999999998865443
No 77
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=57.17 E-value=1.1e+02 Score=27.86 Aligned_cols=135 Identities=10% Similarity=0.044 Sum_probs=65.5
Q ss_pred CCeEEEEEeCCcccCCHHHH-HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCC
Q 039043 255 SKSLIFCAFGSECVLNKEQF-QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHP 333 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~-~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~ 333 (449)
.+++++++ |......-..| .+++.-.++.+.+-++.++.- ....|-. ++..+.. .....+++..-
T Consensus 101 g~~~lll~-gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl------~~~~pht-----rp~~V~~--~at~~~l~~~~ 166 (319)
T 2p90_A 101 NKPFLMLS-GPEPDLRWGDFSNAVVDLVEKFGVENTICLYAA------PMTVPHT-----RPTVVTA--HGNSTDRLKDQ 166 (319)
T ss_dssp CCEEEEEE-EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEE------EESCCTT-----SCCCEEE--EESSGGGCSSC
T ss_pred CCeEEEEE-CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCc------cCCCCCC-----CCCCeEE--EeCCHHHHhhh
Confidence 34566665 55555444444 447777789999988877652 1111110 0112221 11122333221
Q ss_pred Cc--cceeccCCchhHH--HHHhhCCcEecc----cccc---chhhHHHHH----HhhhcceeEeeecCCCCcccHHHHH
Q 039043 334 SV--GCFVTHCGSGSLS--EAMVNECQLVLL----PNVG---DQIINARLM----GEELKVGVEVEKGDEDGLFTRDGVC 398 (449)
Q Consensus 334 ~~--~~~I~HgG~gs~~--eal~~GvP~l~~----P~~~---DQ~~na~~v----~~~~G~G~~~~~~~~~~~~~~~~l~ 398 (449)
.. +-..-.||..++. +|...|.|.+++ |+.. +.|.=|..+ .+++|+-+-+..-. -..+++.
T Consensus 167 ~~~~~~~~ipggi~glL~~~~~~~Gi~a~~l~~~vphYl~~~pdP~AA~~lL~~l~~l~gl~id~~~L~----e~A~~~e 242 (319)
T 2p90_A 167 VSLDTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYPAATLKLLQSIADSADLNLPLLALE----RDAEKVH 242 (319)
T ss_dssp CCCCCCEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCCCHHHH----HHHHHHH
T ss_pred hccccCcEEeccHHHHHHHHHHHCCCCEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHH
Confidence 11 0011235565444 667899999885 3222 334444333 33334443333222 2446677
Q ss_pred HHHHHHhcC
Q 039043 399 KAVKAVIDD 407 (449)
Q Consensus 399 ~~i~~ll~~ 407 (449)
+.|+++.+.
T Consensus 243 ~~i~~l~~~ 251 (319)
T 2p90_A 243 RQLMEQTEE 251 (319)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 778888764
No 78
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=57.11 E-value=76 Score=25.67 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=76.3
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCcc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVG 336 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 336 (449)
+.|-|-+||.+ +....++....|+..|.++=+.+-+ ....|+.+.. |+... --...++
T Consensus 4 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~S-------aHR~p~~~~~-----------~~~~a-~~~g~~V- 61 (163)
T 3ors_A 4 MKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVS-------AHRTPKMMVQ-----------FASEA-RERGINI- 61 (163)
T ss_dssp CCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTSHHHHHH-----------HHHHT-TTTTCCE-
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEC-------CcCCHHHHHH-----------HHHHH-HhCCCcE-
Confidence 45666678776 7778888888899999886555443 2334443221 11000 0012344
Q ss_pred ceeccCCchhHH---HHHhhCCcEeccccccc---hhhHHHHHHhhhccee---EeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 337 CFVTHCGSGSLS---EAMVNECQLVLLPNVGD---QIINARLMGEELKVGV---EVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 337 ~~I~HgG~gs~~---eal~~GvP~l~~P~~~D---Q~~na~~v~~~~G~G~---~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+|.=+|.-.-+ =|-..-+|+|.+|.... -.+--..+.++ --|+ .+...+ ....+..-++..|..+ .|
T Consensus 62 -iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqm-p~GvPVatV~I~~-a~~~nAa~lAa~Il~~-~d 137 (163)
T 3ors_A 62 -IIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQM-PGGIPVATTAIGA-AGAKNAGILAARMLSI-QN 137 (163)
T ss_dssp -EEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHHTC-CTTSCCEECCSTH-HHHHHHHHHHHHHHHT-TC
T ss_pred -EEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHHhhC-CCCCceEEEEcCC-cccHHHHHHHHHHHhC-CC
Confidence 77766653222 22346689999997543 12212223332 3332 111110 0015666777777664 55
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 039043 408 DHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.+++.+++
T Consensus 138 ------~~l~~kl~~~r~~~~~ 153 (163)
T 3ors_A 138 ------PSLVEKLNQYESSLIQ 153 (163)
T ss_dssp ------THHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 7888888888877763
No 79
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=56.01 E-value=13 Score=34.52 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHH
Q 039043 11 TPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPA 90 (449)
Q Consensus 11 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (449)
.-+..|++.|.++|++|.+.+.+.-.+.+++.-..-. -....+. . ..-..+
T Consensus 204 ~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~-~~~~~l~---------------g-------------~~sl~e 254 (349)
T 3tov_A 204 ERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQME-TKPIVAT---------------G-------------KFQLGP 254 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCS-SCCEECT---------------T-------------CCCHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcc-cccEEee---------------C-------------CCCHHH
Confidence 4577888888888888888776655444332200000 0000010 0 012345
Q ss_pred HHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecc
Q 039043 91 IESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~ 128 (449)
+.++++ +.|++|+-- .+.+.+|..+|+|+|.++..
T Consensus 255 ~~ali~--~a~~~i~~D-sG~~HlAaa~g~P~v~lfg~ 289 (349)
T 3tov_A 255 LAAAMN--RCNLLITND-SGPMHVGISQGVPIVALYGP 289 (349)
T ss_dssp HHHHHH--TCSEEEEES-SHHHHHHHTTTCCEEEECSS
T ss_pred HHHHHH--hCCEEEECC-CCHHHHHHhcCCCEEEEECC
Confidence 667777 459999742 34566788899999988553
No 80
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.89 E-value=43 Score=27.70 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
-++-|-..-...||..|+++|++|.++-.+.
T Consensus 10 kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 10 KGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4678888899999999999999999997664
No 81
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=51.64 E-value=30 Score=25.76 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-------CCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF-------GIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-------giP~v~~~~~~ 129 (449)
...+.+++.+||+||.|. .+ .+..+++.+ ++|++.++...
T Consensus 37 ~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 37 IALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 344556777999999998 43 455555543 57888776543
No 82
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=49.74 E-value=17 Score=31.42 Aligned_cols=67 Identities=9% Similarity=0.175 Sum_probs=45.7
Q ss_pred CCccceeccCCchhHHHHHhhCCcEecccccc-c----------------------hhhHHHHHHhhhcceeEeeecCCC
Q 039043 333 PSVGCFVTHCGSGSLSEAMVNECQLVLLPNVG-D----------------------QIINARLMGEELKVGVEVEKGDED 389 (449)
Q Consensus 333 ~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~-D----------------------Q~~na~~v~~~~G~G~~~~~~~~~ 389 (449)
+++ +|+.||.......- .++|+|-++..+ | ....+..+.+++|+-+....-
T Consensus 64 ~dV--IISRGgta~~Lr~~-~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~~~--- 137 (225)
T 2pju_A 64 CDA--IIAAGSNGAYLKSR-LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSY--- 137 (225)
T ss_dssp CSE--EEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEEEE---
T ss_pred CeE--EEeCChHHHHHHhh-CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEEEe---
Confidence 566 99999999988875 689999999742 2 333445555555665554443
Q ss_pred CcccHHHHHHHHHHHhcC
Q 039043 390 GLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 390 ~~~~~~~l~~~i~~ll~~ 407 (449)
-+++++...|+++.++
T Consensus 138 --~~~ee~~~~i~~l~~~ 153 (225)
T 2pju_A 138 --ITEEDARGQINELKAN 153 (225)
T ss_dssp --SSHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHC
Confidence 3677777777777654
No 83
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=49.35 E-value=1e+02 Score=24.83 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=76.5
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCcc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVG 336 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 336 (449)
|.|-|-+||.+ +....++....++..|.++-+.+-+ ....|+.+. .|+...+--..+++
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~s-------aHR~p~~~~-----------~~~~~a~~~~~~~V- 61 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGS-------AHKTAEHVV-----------SMLKEYEALDRPKL- 61 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECC-------TTTCHHHHH-----------HHHHHHHTSCSCEE-
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEc-------ccCCHHHHH-----------HHHHHhhhcCCCcE-
Confidence 35666678776 6777888888899899876555443 233454332 11111110001344
Q ss_pred ceeccCCchhHHH---HHhhCCcEecccccc---chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCc
Q 039043 337 CFVTHCGSGSLSE---AMVNECQLVLLPNVG---DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHS 410 (449)
Q Consensus 337 ~~I~HgG~gs~~e---al~~GvP~l~~P~~~---DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 410 (449)
+|.=+|.-.-+- |-..-+|+|.+|... +-.+ -..+.++ --|+-+-.- +...+..-++..|.. ++|
T Consensus 62 -iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~d-LlS~vqm-p~GvpVatv--~~~~nAa~lA~~Il~-~~d--- 132 (159)
T 3rg8_A 62 -YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGAD-IYSSLRM-PSGISPALV--LEPKNAALLAARIFS-LYD--- 132 (159)
T ss_dssp -EEEECCSSCCHHHHHHHHSSSCEEECCCCCCGGGGTH-HHHHHCC-CTTCCCEEC--CSHHHHHHHHHHHHT-TTC---
T ss_pred -EEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCCcc-HHHHHhC-CCCCceEEe--cCchHHHHHHHHHHh-CCC---
Confidence 887777542222 234668999999642 2222 2222332 223322111 112677777777655 356
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 039043 411 EVGKEIKENHAKWREFLR 428 (449)
Q Consensus 411 ~~~~~~~~~a~~l~~~~~ 428 (449)
++++++.+..+...+
T Consensus 133 ---~~l~~kl~~~r~~~~ 147 (159)
T 3rg8_A 133 ---KEIADSVKSYMESNA 147 (159)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 788888888887665
No 84
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=48.73 E-value=13 Score=31.44 Aligned_cols=68 Identities=9% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCccceeccCCchhHHHHHhhCCcEecccccc-c----------------------hhhHHHHHHhhhcceeEeeecCC
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVG-D----------------------QIINARLMGEELKVGVEVEKGDE 388 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~-D----------------------Q~~na~~v~~~~G~G~~~~~~~~ 388 (449)
.+++ +|+.||.......- .++|+|-++..+ | ....+..+.+++|+-+....-
T Consensus 51 ~~dV--IISRGgta~~lr~~-~~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~-- 125 (196)
T 2q5c_A 51 EVDA--IISRGATSDYIKKS-VSIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLF-- 125 (196)
T ss_dssp TCSE--EEEEHHHHHHHHTT-CSSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEE--
T ss_pred CCeE--EEECChHHHHHHHh-CCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEe--
Confidence 4455 99999999888875 689999999743 3 233334444444554444332
Q ss_pred CCcccHHHHHHHHHHHhcC
Q 039043 389 DGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 389 ~~~~~~~~l~~~i~~ll~~ 407 (449)
-+++++...|+++.++
T Consensus 126 ---~~~~e~~~~i~~l~~~ 141 (196)
T 2q5c_A 126 ---SSEDEITTLISKVKTE 141 (196)
T ss_dssp ---CSGGGHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHC
Confidence 3556666666666554
No 85
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=47.10 E-value=30 Score=28.02 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=34.4
Q ss_pred HHHhhcHHHHHHHHhhcCCCEEEEcC-CCC---------------hHHHHHHhCCceEEEecc
Q 039043 82 TAMDLTEPAIESVLRHLKPDFVFFDF-THW---------------LPPLARKFGIKSVLYCII 128 (449)
Q Consensus 82 ~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~---------------~~~~A~~~giP~v~~~~~ 128 (449)
..+..++..+.+++++.+||.+..+- ++. ...++...|+|+..+.+.
T Consensus 42 ~Rl~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~ 104 (158)
T 1hjr_A 42 SRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 34456788899999999999998875 322 145667788998876543
No 86
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=47.08 E-value=49 Score=22.93 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=35.4
Q ss_pred hhCCcEeccccccchhhHH---HHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 352 VNECQLVLLPNVGDQIINA---RLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 352 ~~GvP~l~~P~~~DQ~~na---~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
-.|+|++++-....|.+.- ..+.+. |+.-.+-+++ ++++|...+++.|..
T Consensus 49 dngkplvvfvngasqndvnefqneakke-gvsydvlkst-----dpeeltqrvreflkt 101 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKE-GVSYDVLKST-----DPEELTQRVREFLKT 101 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHH-TCEEEEEECC-----CHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhc-CcchhhhccC-----CHHHHHHHHHHHHHh
Confidence 3689998887766664322 233445 7777777774 999999999998863
No 87
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=46.89 E-value=33 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCEEEEcC-C--CChHHHHHHh-------CCceEEEecch
Q 039043 91 IESVLRHLKPDFVFFDF-T--HWLPPLARKF-------GIKSVLYCIIS 129 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~-~--~~~~~~A~~~-------giP~v~~~~~~ 129 (449)
..+++++.+||+||.|. . --|..+++.. .+|+|.++...
T Consensus 49 al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 49 ALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 34566777999999998 4 3456666654 58888776544
No 88
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=46.85 E-value=21 Score=32.46 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=48.0
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.+.++--|......+.+..+...|+..+..+.+....... ... ..+. ++....++
T Consensus 12 ~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~----------~a~-----------~~~~--~~~~~~d~-- 66 (304)
T 3s40_A 12 LLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG----------DAT-----------KYCQ--EFASKVDL-- 66 (304)
T ss_dssp EEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTT----------HHH-----------HHHH--HHTTTCSE--
T ss_pred EEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcc----------hHH-----------HHHH--HhhcCCCE--
Confidence 4555554443333455666777788777776665433211 000 0001 11234455
Q ss_pred eeccCCchhHHHHHh------hCCcEecccc
Q 039043 338 FVTHCGSGSLSEAMV------NECQLVLLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal~------~GvP~l~~P~ 362 (449)
+|.-||-||++|++. .++|+.++|.
T Consensus 67 vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 67 IIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp EEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred EEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 999999999999864 5789999996
No 89
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=46.09 E-value=1.3e+02 Score=24.91 Aligned_cols=144 Identities=13% Similarity=0.151 Sum_probs=77.6
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
-|.|-|-+||.+ +....+.....|+..|.++=+.+-+ ....|+.+.. |+.+.+ -...++
T Consensus 13 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~S-------aHR~p~~l~~-----------~~~~a~-~~g~~V 71 (183)
T 1o4v_A 13 VPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVS-------AHRTPDRMFE-----------YAKNAE-ERGIEV 71 (183)
T ss_dssp -CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECC-------TTTCHHHHHH-----------HHHHTT-TTTCCE
T ss_pred CCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEc-------ccCCHHHHHH-----------HHHHHH-hCCCcE
Confidence 457888888876 7788888888899999886555443 2334443321 111000 012334
Q ss_pred cceeccCCchhHH---HHHhhCCcEeccccccc-hhhHHHHHHhhhcc--eeEeeecCCCCcccHHHHHHHHHHHhcCCC
Q 039043 336 GCFVTHCGSGSLS---EAMVNECQLVLLPNVGD-QIINARLMGEELKV--GVEVEKGDEDGLFTRDGVCKAVKAVIDDDH 409 (449)
Q Consensus 336 ~~~I~HgG~gs~~---eal~~GvP~l~~P~~~D-Q~~na~~v~~~~G~--G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~ 409 (449)
+|.=+|.-.-+ =|-..-+|+|.+|.... -......+.=. ++ |+-+..-.=+...+..-++..|.. +.|
T Consensus 72 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~Id~~~nAa~lAaqIla-~~d-- 145 (183)
T 1o4v_A 72 --IIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIV-QMPGGVPVATVAINNAKNAGILAASILG-IKY-- 145 (183)
T ss_dssp --EEEEEESSCCHHHHHHHHCSSCEEEEEECCTTTTTHHHHHHHH-TCCTTCCCEECCTTCHHHHHHHHHHHHH-TTC--
T ss_pred --EEEecCcccccHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecCCchHHHHHHHHHHh-cCC--
Confidence 77666543222 23346789999998542 11122211111 33 421111000012577777777764 466
Q ss_pred chhHHHHHHHHHHHHHHHHhc
Q 039043 410 SEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 410 ~~~~~~~~~~a~~l~~~~~~~ 430 (449)
++++++.+..+...+..
T Consensus 146 ----~~l~~kL~~~r~~~~~~ 162 (183)
T 1o4v_A 146 ----PEIARKVKEYKERMKRE 162 (183)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 78888888887777643
No 90
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=45.93 E-value=1.2e+02 Score=24.75 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=76.1
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCcc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVG 336 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 336 (449)
|.|-|-+||.+ +....++....|+..|.++-+.+-+ ....|+.+.. |+... --...++
T Consensus 13 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~S-------aHR~p~~~~~-----------~~~~a-~~~g~~V- 70 (174)
T 3kuu_A 13 VKIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVS-------AHRTPDRLFS-----------FAEQA-EANGLHV- 70 (174)
T ss_dssp CCEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTCHHHHHH-----------HHHHT-TTTTCSE-
T ss_pred CcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEc-------ccCCHHHHHH-----------HHHHH-HhCCCcE-
Confidence 35666677776 7778888888899999886555543 2334443321 11000 0012344
Q ss_pred ceeccCCchhHHH---HHhhCCcEecccccc-chhhHH--HHHHhhhcceeE---eeecCCCCcccHHHHHHHHHHHhcC
Q 039043 337 CFVTHCGSGSLSE---AMVNECQLVLLPNVG-DQIINA--RLMGEELKVGVE---VEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 337 ~~I~HgG~gs~~e---al~~GvP~l~~P~~~-DQ~~na--~~v~~~~G~G~~---~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+|.=+|.-.-+- |-..-+|+|.+|... +-.... ..+.++ --|+- +...+ ....+..-++..|.. +.|
T Consensus 71 -iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqm-P~GvPVatV~I~~-a~~~nAa~lAa~ILa-~~d 146 (174)
T 3kuu_A 71 -IIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQM-PRGIPVGTLAIGK-AGAANAALLAAQILA-LHD 146 (174)
T ss_dssp -EEEEEESSCCHHHHHHHTCSSCEEEEEECCTTTTTHHHHHHHHTC-CTTSCCEECCSSH-HHHHHHHHHHHHHHH-TTC
T ss_pred -EEEECChhhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHhhhC-CCCCeeEEEEeCC-ccchHHHHHHHHHHc-CCC
Confidence 777766533222 233468999999853 221222 223332 22321 11110 001456667766655 356
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 039043 408 DHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.+++.+++
T Consensus 147 ------~~l~~kl~~~r~~~~~ 162 (174)
T 3kuu_A 147 ------TELAGRLAHWRQSQTD 162 (174)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 7888888888887763
No 91
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=45.63 E-value=12 Score=38.88 Aligned_cols=112 Identities=7% Similarity=-0.001 Sum_probs=75.4
Q ss_pred EEeccchhhhhhcCCCccceeccCCchhHHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecC---CCCcccHH
Q 039043 319 IHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGD---EDGLFTRD 395 (449)
Q Consensus 319 ~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~---~~~~~~~~ 395 (449)
.+.++.+-.++|..+|+ +||-- ...+.|.+..++|+|......|+...- .. | ...+..+ +.-.-+.+
T Consensus 602 ~~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~----~r-g--~y~d~~~~~pg~~~~~~~ 671 (729)
T 3l7i_A 602 DVSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKG----LR-G--FYMNYMEDLPGPIYTEPY 671 (729)
T ss_dssp ECTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSS----CC-S--BSSCTTSSSSSCEESSHH
T ss_pred eCCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhc----cC-C--cccChhHhCCCCeECCHH
Confidence 35556677889999999 99983 456779999999999988766654321 01 2 2222211 01124778
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH---hcCcchHHHHHHHHHHH
Q 039043 396 GVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR---SERLENSYLDGFVQKLH 445 (449)
Q Consensus 396 ~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~---~~~~~~~~~~~~~~~~~ 445 (449)
+|.++|.+...+. ..++++.+++.+.+. ++..+.+.++.+.+...
T Consensus 672 eL~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~ 719 (729)
T 3l7i_A 672 GLAKELKNLDKVQ-----QQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIK 719 (729)
T ss_dssp HHHHHHTTHHHHH-----HHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccc-----hhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCc
Confidence 8999998877531 578888888888875 45566667777766554
No 92
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=45.20 E-value=19 Score=27.66 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHH---HhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLAR---KFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~---~~giP~v~~ 125 (449)
+..+++++.+||+||.|. .+ .|..+++ ..++|+|.+
T Consensus 44 eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~l 85 (123)
T 2lpm_A 44 EALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFA 85 (123)
T ss_dssp HHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCB
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEE
Confidence 445567788999999998 43 3455555 347887754
No 93
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=45.00 E-value=31 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 7 MGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 7 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.|.+ -.++|++|.++|++|+++..+..
T Consensus 28 SG~m--G~aiA~~~~~~Ga~V~lv~~~~~ 54 (232)
T 2gk4_A 28 TGHL--GKIITETLLSAGYEVCLITTKRA 54 (232)
T ss_dssp CCHH--HHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCHH--HHHHHHHHHHCCCEEEEEeCCcc
Confidence 4443 35689999999999999988753
No 94
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=44.64 E-value=36 Score=29.36 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=26.9
Q ss_pred CccCCCCCCHHHHHHHH------HHHHhCC-CEEEEEcCCccc
Q 039043 1 IYPWFAMGHLTPFLHIA------NKLAERG-HRISFLLPAKAI 36 (449)
Q Consensus 1 i~~~~~~GH~~p~l~la------~~L~~rG-h~Vt~~~~~~~~ 36 (449)
+|+.|+.+.++.++.-+ +.|.+.| .+|++.+.....
T Consensus 32 lVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~ 74 (224)
T 2jzc_A 32 FVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYS 74 (224)
T ss_dssp EEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSC
T ss_pred EEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCch
Confidence 35677777788887766 8888888 788888876543
No 95
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=44.62 E-value=21 Score=32.88 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=47.4
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.|+++-.|......+.+..+...|+..+..+.+...... .... .. -.......+++
T Consensus 28 ~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~----------~~a~-----------~~-~~~~~~~~~d~-- 83 (337)
T 2qv7_A 28 RIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKI----------GDAT-----------LE-AERAMHENYDV-- 83 (337)
T ss_dssp EEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCST----------THHH-----------HH-HHHHTTTTCSE--
T ss_pred EEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCc----------chHH-----------HH-HHHHhhcCCCE--
Confidence 455554444323345566777888887776555443221 0000 00 11122234566
Q ss_pred eeccCCchhHHHHHh------hCCcEecccc
Q 039043 338 FVTHCGSGSLSEAMV------NECQLVLLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal~------~GvP~l~~P~ 362 (449)
+|.=||=||++|++. .++|+.++|.
T Consensus 84 vvv~GGDGTv~~v~~~l~~~~~~~pl~iIP~ 114 (337)
T 2qv7_A 84 LIAAGGDGTLNEVVNGIAEKPNRPKLGVIPM 114 (337)
T ss_dssp EEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred EEEEcCchHHHHHHHHHHhCCCCCcEEEecC
Confidence 999999999999863 4689999996
No 96
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=44.60 E-value=25 Score=31.26 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCEEEEcC-CC------ChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-TH------WLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~~------~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+++++.+||+|++.. +. .+..+|..+|+|++...+.
T Consensus 102 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 4566677777999999877 43 5689999999999987654
No 97
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=44.35 E-value=48 Score=27.04 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHhhcHHHHHHHHhhcCCCEEEEcC-CCC---------------hHHHHHHhCCceEEEecc
Q 039043 80 LMTAMDLTEPAIESVLRHLKPDFVFFDF-THW---------------LPPLARKFGIKSVLYCII 128 (449)
Q Consensus 80 ~~~~~~~~~~~~~~ll~~~~pD~vI~D~-~~~---------------~~~~A~~~giP~v~~~~~ 128 (449)
+...+..+++.+.+++++.+||.+..+. ++. +..++...|+|+.-+.+.
T Consensus 44 ~~~RL~~I~~~l~~~i~~~~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~ 108 (166)
T 4ep4_A 44 AKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPM 108 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 3455566888999999999999999886 432 245667889999876543
No 98
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=43.62 E-value=6.9 Score=37.44 Aligned_cols=27 Identities=11% Similarity=0.328 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
|=.+....+|++|+++||+|++++...
T Consensus 63 GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 63 GGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp HHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred cHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 445668899999999999999999864
No 99
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=43.38 E-value=2e+02 Score=26.52 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=67.2
Q ss_pred CeEEEEEeCCcccCCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 256 KSLIFCAFGSECVLNKEQFQE-LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
++++++ .|-.....-..+.. ++.-.++.+.+-++.++.- ....|-. ++..+.. .....+++....
T Consensus 142 ~~~LlL-~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLggl------p~~vpht-----Rp~~V~~--~at~~el~~~~~ 207 (351)
T 2wam_A 142 TPFLLL-AGLEPDLKWERFITAVRLLAERLGVRQTIGLGTV------PMAVPHT-----RPITMTA--HSNNRELISDFQ 207 (351)
T ss_dssp CEEEEE-EEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEE------EESCCTT-----SCCCEEE--EESSGGGGTTSC
T ss_pred CcEEEE-ECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecc------cCCCCCc-----cCcceEE--EECCHHHHHhcC
Confidence 445555 45555444444444 6666789999988877652 1122110 0112221 122333333222
Q ss_pred c--cceeccCCchhHH--HHHhhCCcEecc----ccccch---hhHHHH----HHhhhcceeEeeecCCCCcccHHHHHH
Q 039043 335 V--GCFVTHCGSGSLS--EAMVNECQLVLL----PNVGDQ---IINARL----MGEELKVGVEVEKGDEDGLFTRDGVCK 399 (449)
Q Consensus 335 ~--~~~I~HgG~gs~~--eal~~GvP~l~~----P~~~DQ---~~na~~----v~~~~G~G~~~~~~~~~~~~~~~~l~~ 399 (449)
+ .-+---+|..++. +|...|.|.+++ |...=| |.=|.. +.+++|+-+-+..-. -..+++.+
T Consensus 208 ~~~~~~~gp~GisglL~~~~~~~Gi~a~~l~~~vP~Yla~~pdP~AA~alL~~L~~llgl~ip~~~L~----e~Ae~ie~ 283 (351)
T 2wam_A 208 PSISEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHYLTQTDYPAAAQALLEQVAKTGSLQLPLAVLA----EAAAEVQA 283 (351)
T ss_dssp CCCCSEEEECCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHTCCCCCHHHH----HHHHHHHH
T ss_pred CccCcccccccHHHHHHHHHHHcCCCEEEEEEeCCccccCCCCHHHHHHHHHHHHHHHCCCCCHHHHH----HHHHHHHH
Confidence 1 0022234444443 678899999886 554222 333333 334334444444332 34577888
Q ss_pred HHHHHhcC
Q 039043 400 AVKAVIDD 407 (449)
Q Consensus 400 ~i~~ll~~ 407 (449)
.|+++.++
T Consensus 284 ~i~el~~~ 291 (351)
T 2wam_A 284 KIDEQVQA 291 (351)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 89888875
No 100
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.08 E-value=43 Score=28.35 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=31.0
Q ss_pred cccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEE
Q 039043 247 ETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVA 291 (449)
Q Consensus 247 ~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 291 (449)
.+|+.....+.++||..+|......+.+....++++.+|..+.+.
T Consensus 19 ~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 19 TEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 334433334669999988775444567888999999999875543
No 101
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=42.82 E-value=36 Score=31.54 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHHHHH--hCCCEEEEEcCCcc
Q 039043 4 WFAMGHLTPFLHIANKLA--ERGHRISFLLPAKA 35 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~--~rGh~Vt~~~~~~~ 35 (449)
-|+-|-..-..+||..|+ ++|++|.++..+..
T Consensus 26 kGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 26 KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 367888899999999999 89999999998854
No 102
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=42.42 E-value=47 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHH----hCCceEEEecchH
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARK----FGIKSVLYCIISP 130 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~----~giP~v~~~~~~~ 130 (449)
+.+..+-++|+||++|.-+ ...+...||. .|+|+|+++-.+.
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 102 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPG 102 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGG
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcc
Confidence 3444555899999887644 4555666664 5999998866553
No 103
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=42.02 E-value=10 Score=30.17 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHH
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEP 89 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (449)
=.-++.+|+.|.+.|+++. +|. .....+++.| +....+. .+.++.. +...+
T Consensus 36 K~~l~~~a~~l~~lGf~i~-AT~-GTa~~L~~~G-----i~v~~v~-----k~~egg~-----------------~~~~~ 86 (143)
T 2yvq_A 36 RPRFLGVAEQLHNEGFKLF-ATE-ATSDWLNANN-----VPATPVA-----WPSQEGQ-----------------NPSLS 86 (143)
T ss_dssp HHHHHHHHHHHHTTTCEEE-EEH-HHHHHHHHTT-----CCCEEEC-----CGGGC----------------------CB
T ss_pred hHHHHHHHHHHHHCCCEEE-ECc-hHHHHHHHcC-----CeEEEEE-----eccCCCc-----------------ccccc
Confidence 3457889999999999743 333 3345677777 6666654 1111000 00114
Q ss_pred HHHHHHhhcCCCEEEEcC-C--------CChHHHHHHhCCceEE
Q 039043 90 AIESVLRHLKPDFVFFDF-T--------HWLPPLARKFGIKSVL 124 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~--------~~~~~~A~~~giP~v~ 124 (449)
.+.+++++-+.|+||... . +.-...|-..+||++.
T Consensus 87 ~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp CHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred cHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 578889999999999866 3 1345668889999974
No 104
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.82 E-value=74 Score=24.60 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.0
Q ss_pred hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 353 NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
..+|+|++--..+ ......+.+. |+--.+.+. ++.++|..+|+.++..
T Consensus 74 ~~~pii~ls~~~~-~~~~~~~~~~-g~~~~l~kP-----~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 74 PDLPMILVTGHGD-IPMAVQAIQD-GAYDFIAKP-----FAADRLVQSARRAEEK 121 (155)
T ss_dssp TTSCEEEEECGGG-HHHHHHHHHT-TCCEEEESS-----CCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCC-hHHHHHHHhc-CCCeEEeCC-----CCHHHHHHHHHHHHHH
Confidence 4788888765544 3344455556 886677765 7999999999999886
No 105
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.82 E-value=61 Score=30.24 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=28.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
--|+.|-..=++.+|..+..+|..|.|+..+...
T Consensus 81 G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 81 GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 4578888888999999999999999999988643
No 106
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.71 E-value=50 Score=25.04 Aligned_cols=41 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-------CCceEEEecch
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-------GIKSVLYCIIS 129 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-------giP~v~~~~~~ 129 (449)
....+.+++.+||+||+|. ...+..+++.+ .+|++.++...
T Consensus 38 ~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 38 EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
No 107
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=40.76 E-value=41 Score=30.86 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=46.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccc
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGC 337 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~ 337 (449)
.|+++-.|... +.+..+...|+..+..+.+...... .... .. -...+...+++
T Consensus 33 ~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~----------~~~~-----------~~-~~~~~~~~~d~-- 85 (332)
T 2bon_A 33 LLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEK----------GDAA-----------RY-VEEARKFGVAT-- 85 (332)
T ss_dssp EEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCST----------THHH-----------HH-HHHHHHHTCSE--
T ss_pred EEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCc----------chHH-----------HH-HHHHHhcCCCE--
Confidence 45555444332 4566778888888887766543321 1000 00 01122234566
Q ss_pred eeccCCchhHHHHHh--------hCCcEecccc
Q 039043 338 FVTHCGSGSLSEAMV--------NECQLVLLPN 362 (449)
Q Consensus 338 ~I~HgG~gs~~eal~--------~GvP~l~~P~ 362 (449)
+|.-||=||++|++. .++|+.++|.
T Consensus 86 vvv~GGDGTl~~v~~~l~~~~~~~~~plgiiP~ 118 (332)
T 2bon_A 86 VIAGGGDGTINEVSTALIQCEGDDIPALGILPL 118 (332)
T ss_dssp EEEEESHHHHHHHHHHHHHCCSSCCCEEEEEEC
T ss_pred EEEEccchHHHHHHHHHhhcccCCCCeEEEecC
Confidence 999999999998753 5789999996
No 108
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=40.26 E-value=32 Score=30.36 Aligned_cols=40 Identities=10% Similarity=-0.038 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCEEEEcC-CC------ChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-TH------WLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~~------~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+++++.+||+|++.. +. .+..+|..+|+|.+...+.
T Consensus 106 ~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 4566667777899999876 43 5689999999999987654
No 109
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=39.68 E-value=1.8e+02 Score=24.76 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=...|...+..|+.+|
T Consensus 79 ~~~~~~l~~~~~Dlivlagy~-------~iL~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~Ai~~G 138 (215)
T 3da8_A 79 VAITAATAAHEPDLVVSAGFM-------RILGPQFLSRFYGRTLNT-----------HPAL--LPAFPGTHGVADALAYG 138 (215)
T ss_dssp HHHHHHHHTTCCSEEEEEECC-------SCCCHHHHHHHTTTEEEE-----------ESSC--TTSSCSTTHHHHHHHHT
T ss_pred HHHHHHHHhhCCCEEEEcCch-------hhCCHHHHhhccCCeEEe-----------Cccc--ccCCCCchHHHHHHHcC
Confidence 347778888888888888653 457777776544333333 4444 44456899999999999
Q ss_pred CcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 355 CQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 355 vP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
+....+-.+ .+..+-..-+.+. -+.+... -|.++|.+++.++ +- .-+.+.++.+.
T Consensus 139 ~~~tGvTvh~v~~~lD~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~-~~------~ll~~~l~~~~ 195 (215)
T 3da8_A 139 VKVTGATVHLVDAGTDTGPILAQQ---PVPVLDG-----DDEETLHERIKVT-ER------RLLVAAVAALA 195 (215)
T ss_dssp CSEEEEEEEECCSSSSCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH-HH------HHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCCCCCEEEEE---EeecCCC-----CCHHHHHHHHHHH-HH------HHHHHHHHHHH
Confidence 999887754 2334433333322 2334444 4889999888765 32 44555555544
No 110
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=39.61 E-value=42 Score=25.83 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh---------CCceEEEecc
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF---------GIKSVLYCII 128 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~---------giP~v~~~~~ 128 (449)
...+.+++.+||+||.|. .+ .+..+++.+ .+|+++++..
T Consensus 49 ~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 49 QVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 344556677999999997 43 355555543 2788877654
No 111
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=39.30 E-value=32 Score=30.28 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCEEEEcC-CC------ChHHHHHHhCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-TH------WLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~~------~~~~~A~~~giP~v~~~~~ 128 (449)
..+.+++++.+||+|++.. +. .+..+|..+|+|.+...+.
T Consensus 103 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 103 KILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 4556667777899999876 43 5689999999999987654
No 112
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=38.72 E-value=37 Score=30.46 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=53.4
Q ss_pred HHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcC
Q 039043 20 LAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLK 99 (449)
Q Consensus 20 L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 99 (449)
|.....+..+.+++.|.-+.++.| ++...+. ++..+.+.+ ......+.+.+++.+
T Consensus 174 l~~~~~~~~v~~H~af~Yf~~~yG-----l~~~~~~-----~~~~~~eps---------------~~~l~~l~~~ik~~~ 228 (286)
T 3gi1_A 174 FKKVRSKTFVTQHTAFSYLAKRFG-----LKQLGIS-----GISPEQEPS---------------PRQLKEIQDFVKEYN 228 (286)
T ss_dssp HTTCSCCEEEEEESCCHHHHHHTT-----CEEEEEE-----CSCC---CC---------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCCEEEEECCchHHHHHHCC-----CeEeecc-----ccCCCCCCC---------------HHHHHHHHHHHHHcC
Confidence 333344555667788888888888 7777654 221111111 113357788889999
Q ss_pred CCEEEEcC-CC--ChHHHHHHhCCceEEEe
Q 039043 100 PDFVFFDF-TH--WLPPLARKFGIKSVLYC 126 (449)
Q Consensus 100 pD~vI~D~-~~--~~~~~A~~~giP~v~~~ 126 (449)
..+|+++. .. .+..+|+..|++++.+.
T Consensus 229 v~~if~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 229 VKTIFAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp CCEEEECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred CCEEEEeCCCChHHHHHHHHHhCCeEEEec
Confidence 99999998 33 33578999999998653
No 113
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=38.66 E-value=48 Score=24.44 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCCEEEEcC-CCC--hHHHHHH----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-THW--LPPLARK----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~~--~~~~A~~----~giP~v~~~~~~ 129 (449)
...+.+++.+||+||.|. .+. +..+++. .++|++.++...
T Consensus 37 ~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 37 EAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 445566777999999998 443 3444433 368888776543
No 114
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=38.26 E-value=1.8e+02 Score=26.20 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHh
Q 039043 273 QFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMV 352 (449)
Q Consensus 273 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~ 352 (449)
.-.++++.++..+..+++..+.. .-+|+.+....+.+-+=+ |+++ .=...|.+.+..|+.
T Consensus 169 ~~~~~~~~l~~~~~DliVlagym-------~IL~~~~l~~~~~~~INi-----------HpSl--LP~frG~~p~~~Ai~ 228 (302)
T 3o1l_A 169 AFAEVSRLVGHHQADVVVLARYM-------QILPPQLCREYAHQVINI-----------HHSF--LPSFVGAKPYHQASL 228 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEESSCC-------SCCCTTHHHHTTTCEEEE-----------ESSC--TTSSCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEHhHhh-------hhcCHHHHhhhhCCeEEe-----------Cccc--ccCCCCccHHHHHHH
Confidence 33457788888888888887653 457777776554333333 4444 444569999999999
Q ss_pred hCCcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 353 NECQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 353 ~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
.|+....+-.+. +..+-.--+. .--+.+... -|.++|.+++.++
T Consensus 229 ~G~k~tG~TvH~v~~~lD~GpII~---Q~~v~I~~~-----dt~~~L~~r~~~~ 274 (302)
T 3o1l_A 229 RGVKLIGATCHYVTEELDAGPIIE---QDVVRVSHR-----DSIENMVRFGRDV 274 (302)
T ss_dssp HTCSEEEEEEEECCSSTTCSCEEE---EEEEECCTT-----CCHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEECCCCcCCCeEE---EEEEecCCC-----CCHHHHHHHHHHH
Confidence 999998887642 3333333333 223344444 4899999888775
No 115
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=37.90 E-value=1.7e+02 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=30.6
Q ss_pred eEEEeccchhh-h-hhcCCCccceeccCCchhHHHHH---------hhCCcEecccc
Q 039043 317 GFIHGGWVQQQ-L-ILKHPSVGCFVTHCGSGSLSEAM---------VNECQLVLLPN 362 (449)
Q Consensus 317 ~~~~~~~~pq~-~-lL~~~~~~~~I~HgG~gs~~eal---------~~GvP~l~~P~ 362 (449)
+..+...++.. . ++..++. .++--||.||+-|.. .+++|++.+-.
T Consensus 88 ~~~~~~~~~~Rk~~~~~~sda-~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 88 DVRVVADMHERKAAMAQEAEA-FIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp EEEEESSHHHHHHHHHHHCSE-EEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred cccccCCHHHHHHHHHHhCCE-EEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 35555666542 3 4444554 577889999998876 47999998864
No 116
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=37.61 E-value=1.7e+02 Score=23.91 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=78.6
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
++|.|-|-+||.+ +-..++.....|+..|.++-+.+-+ ....|+.+.. |+-... -...+
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~s-------aHR~p~~l~~-----------~~~~a~-~~g~~ 69 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVS-------AHRMPDEMFD-----------YAEKAR-ERGLR 69 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTSHHHHHH-----------HHHHHT-TTTCS
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEc-------cccCHHHHHH-----------HHHHHH-hcCCe
Confidence 4567888889886 7778888888999999886555543 2334543321 111100 01223
Q ss_pred ccceeccCCc-hhH--HHHHhhCCcEeccccccc---hhhHHHHHHhhhcceeEeeecC--CCCcccHHHHHHHHHHHhc
Q 039043 335 VGCFVTHCGS-GSL--SEAMVNECQLVLLPNVGD---QIINARLMGEELKVGVEVEKGD--EDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 335 ~~~~I~HgG~-gs~--~eal~~GvP~l~~P~~~D---Q~~na~~v~~~~G~G~~~~~~~--~~~~~~~~~l~~~i~~ll~ 406 (449)
+ +|.=.|. +-+ .=|-..-+|+|.+|.... -.+--..+.++ --|+-+-.-. .+...+..-++..|-. ++
T Consensus 70 V--iIa~AG~aahLpgvvA~~t~~PVIgVPv~~~~l~G~dsLlSivqM-P~Gvpvatv~i~~~~a~NAallA~~ILa-~~ 145 (173)
T 4grd_A 70 A--IIAGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQM-PKGVPVATFAIGEAGAANAALFAVSILS-GN 145 (173)
T ss_dssp E--EEEEEESSCCHHHHHHHHCCSCEEEEEECCTTTTTHHHHHHHHCC-CTTSCCEECCSSHHHHHHHHHHHHHHHT-TS
T ss_pred E--EEEeccccccchhhheecCCCCEEEEEcCCCCCCchhHHHHHHhC-CCCCCceEEecCCcchHHHHHHHHHHHc-CC
Confidence 3 6665553 211 123456799999997432 23322233333 3333222111 0011345556665544 35
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh
Q 039043 407 DDHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
| ++++++.+.++++.++
T Consensus 146 d------~~l~~kl~~~r~~~~~ 162 (173)
T 4grd_A 146 S------VDYANRLAAFRVRQNE 162 (173)
T ss_dssp C------HHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHH
Confidence 6 8889888888887763
No 117
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=37.42 E-value=1.3e+02 Score=26.90 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
..+++.++..+..+++..+.. .-+|+.+....+.+-+=+ |+++ .=...|.+.+..|+.+|
T Consensus 155 ~~~~~~l~~~~~Dlivlagym-------~il~~~~l~~~~~~~iNi-----------HpSl--LP~~rG~~p~~~Ai~~G 214 (287)
T 3nrb_A 155 SQIKNIVTQSQADLIVLARYM-------QILSDDLSAFLSGRCINI-----------HHSF--LPGFKGAKPYHQAHTRG 214 (287)
T ss_dssp HHHHHHHHHHTCSEEEESSCC-------SCCCHHHHHHHTTSEEEE-----------ESSC--TTTTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEhhhhh-------hhcCHHHHhhccCCeEEE-----------Cccc--ccCCCCchHHHHHHHcC
Confidence 347788888888888887653 457787776654443333 4444 44456999999999999
Q ss_pred CcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+....+-.+. +..+-.--+. .--+.+... -|.++|.+++.++
T Consensus 215 ~k~tG~Tvh~v~~~lD~GpIi~---Q~~v~i~~~-----dt~~~L~~r~~~~ 258 (287)
T 3nrb_A 215 VKLIGATAHFVTADLDEGPIIA---QDVEHVSHR-----DSAEDLVRKGRDI 258 (287)
T ss_dssp CSEEEEEEEECCSSSSCCCEEE---EEEEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEECCCCcCCCEEE---EEEEecCCC-----CCHHHHHHHHHHH
Confidence 9998887642 3333332232 223344444 4889998888775
No 118
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=37.34 E-value=1.2e+02 Score=25.35 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=73.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEecc-----chhhhhh
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGW-----VQQQLIL 330 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~-----~pq~~lL 330 (449)
|.+++.-.||..... ...+++.|.+.|..+.+++...- ..-+...-... ...+++..-| +.+.++.
T Consensus 9 k~IllgvTGs~aa~k---~~~l~~~L~~~g~~V~vv~T~~A-----~~fi~~~~~~~-l~~~v~~~~~~~~~~~~hi~l~ 79 (194)
T 1p3y_1 9 KKLLIGICGSISSVG---ISSYLLYFKSFFKEIRVVMTKTA-----EDLIPAHTVSY-FCDHVYSEHGENGKRHSHVEIG 79 (194)
T ss_dssp CEEEEEECSCGGGGG---THHHHHHHTTTSSEEEEEECHHH-----HHHSCHHHHGG-GSSEEECTTCSSSCCCCHHHHH
T ss_pred CEEEEEEECHHHHHH---HHHHHHHHHHCCCEEEEEEchhH-----HHHHHHHHHHH-hcCCEeccccccCCCcCccccc
Confidence 346666667666542 34455556666777766654320 01111110111 1233322212 3344555
Q ss_pred cCCCccceeccCCchhHH-------------HHHhhCCcEecccccc----ch---hhHHHHHHhhhcceeEeeecCC--
Q 039043 331 KHPSVGCFVTHCGSGSLS-------------EAMVNECQLVLLPNVG----DQ---IINARLMGEELKVGVEVEKGDE-- 388 (449)
Q Consensus 331 ~~~~~~~~I~HgG~gs~~-------------eal~~GvP~l~~P~~~----DQ---~~na~~v~~~~G~G~~~~~~~~-- 388 (449)
..+|+ .+|.-+=+||+. -++..++|+++.|-.. .. -.|-.++.+. |+=+ +++..+
T Consensus 80 ~~aD~-~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~-G~~i-v~p~~g~~ 156 (194)
T 1p3y_1 80 RWADI-YCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDLMWNKTVVSRNIEQLRKD-GHIV-IEPVEIMA 156 (194)
T ss_dssp HHCSE-EEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHHHHTCHHHHHHHHHHHHH-TCEE-CCCBCCC-
T ss_pred ccCCE-EEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEECCChhhcCCHHHHHHHHHHHHC-CCEE-ECCCCCcc
Confidence 55664 355555555544 2366899999999532 22 3566677776 8743 332221
Q ss_pred -----------CCcccHHHHHHHHHHHhcC
Q 039043 389 -----------DGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 389 -----------~~~~~~~~l~~~i~~ll~~ 407 (449)
....+.++|.+.+.+.+++
T Consensus 157 f~lacg~~g~~g~~~~~~~iv~~v~~~l~~ 186 (194)
T 1p3y_1 157 FEIATGTRKPNRGLITPDKALLAIEKGFKE 186 (194)
T ss_dssp -----------CBCCCHHHHHHHHHHHCC-
T ss_pred cccccCCcCcCCCCCCHHHHHHHHHHHhcc
Confidence 2235789999999888875
No 119
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=37.23 E-value=1.6e+02 Score=24.94 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=...|...+..|+.+|
T Consensus 73 ~~~~~~l~~~~~Dliv~agy~-------~il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~Ai~~G 132 (215)
T 3tqr_A 73 STLQKTIDHYDPKLIVLAGFM-------RKLGKAFVSHYSGRMINI-----------HPSL--LPKYTGLNTHERALAAG 132 (215)
T ss_dssp HHHHHHHHTTCCSEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------ESSS--TTTTCSSCHHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEEccch-------hhCCHHHHhhccCCeEEe-----------Cccc--CCCCCChhHHHHHHHcC
Confidence 347778888888888887653 457777776544333333 4444 44456899999999999
Q ss_pred CcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
.....+-.+ .+..+-...+.+. -+.+... -|.++|.+++.++
T Consensus 133 ~~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~ 176 (215)
T 3tqr_A 133 ETEHGVSVHYVTEDLDAGPLICQA---RLSITPQ-----DTPETLKTRVHAL 176 (215)
T ss_dssp CSEEEEEEEECC-CTTCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCCCCCEEEEE---EEecCCC-----CCHHHHHHHHHHH
Confidence 999887754 2333433333322 2334444 4889999888765
No 120
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=36.63 E-value=53 Score=30.44 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCcc-------ccCCCh-hHHHhcCCCeEEEe-cc---
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTI-------ESALPE-GFEERVKGRGFIHG-GW--- 323 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~-------~~~lp~-~~~~~~~~~~~~~~-~~--- 323 (449)
+.+++.+.||.+...+ ..+++++|.+.|++++|+.....-+.+. ...+|. ++......+++... .+
T Consensus 3 ~~i~i~~GGTgGHi~p--alala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFP--ALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKS 80 (365)
T ss_dssp CEEEEECCSSHHHHHH--HHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHH
T ss_pred CcEEEEcCCCHHHHHH--HHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHH
Confidence 4477777777652221 3457778888999999986543211000 001110 11100000011100 00
Q ss_pred chh-hhhhc--CCCccceeccCCchhH---HHHHhhCCcEec
Q 039043 324 VQQ-QLILK--HPSVGCFVTHCGSGSL---SEAMVNECQLVL 359 (449)
Q Consensus 324 ~pq-~~lL~--~~~~~~~I~HgG~gs~---~eal~~GvP~l~ 359 (449)
+.+ ..++. .|++ +|++||+-++ .-|-..|+|+++
T Consensus 81 ~~~~~~~l~~~~PDv--Vi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 81 LFQALRVIRQLRPVC--VLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp HHHHHHHHHHHCCSE--EEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhcCCCE--EEEcCCcchHHHHHHHHHcCCCEEE
Confidence 111 12333 5888 9999998765 456778999986
No 121
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=36.63 E-value=1.8e+02 Score=24.73 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=...|...+..|+.+|
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~-------~IL~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~Ai~~G 131 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFM-------SILPEKFVTDWHHKIINI-----------HPSL--LPSFKGLNAQEQAYKAG 131 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------ESSC--TTTTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEEeCCc-------eEeCHHHHhhccCCeEEE-----------Cccc--ccCCCCccHHHHHHHcC
Confidence 456777777888888887653 457777776544333333 4554 44567899999999999
Q ss_pred CcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+....+-.+ .+..+-...+.+. -+.+... -|.++|.+++.++
T Consensus 132 ~~~tGvTvh~v~~~lD~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~ 175 (215)
T 3kcq_A 132 VKIAGCTLHYVYQELDAGPIIMQA---AVPVLRE-----DTAESLASRILAA 175 (215)
T ss_dssp CSEEEEEEEECCSSTTCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCCCCCEEEEE---EeecCCC-----CCHHHHHHHHHHH
Confidence 998887754 2334443333322 3334444 4889998888765
No 122
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=36.48 E-value=58 Score=29.65 Aligned_cols=36 Identities=8% Similarity=-0.131 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
.++.++++. .|++|+-- .+.+.+|..+|+|+|.++.
T Consensus 253 ~e~~ali~~--a~l~I~~D-sg~~HlAaa~g~P~v~lfg 288 (348)
T 1psw_A 253 DQAVILIAA--CKAIVTND-SGLMHVAAALNRPLVALYG 288 (348)
T ss_dssp HHHHHHHHT--SSEEEEES-SHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHh--CCEEEecC-CHHHHHHHHcCCCEEEEEC
Confidence 456677774 49999753 3445668889999998754
No 123
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=36.11 E-value=99 Score=23.23 Aligned_cols=49 Identities=6% Similarity=0.079 Sum_probs=31.6
Q ss_pred hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 353 NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
...|+|++--..|.......+... |+--.+.+. ++.++|..+|++++..
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~~~-ga~~~l~KP-----~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAINDA-GIHQFLTKP-----WHPEQLLSSARNAARM 119 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHHHT-TCCEEEESS-----CCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHhh-chhhhccCC-----CCHHHHHHHHHHHHHH
Confidence 457777765554443333333333 454466665 7999999999999875
No 124
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=36.03 E-value=67 Score=24.28 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-------CCceEEEecc
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF-------GIKSVLYCII 128 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-------giP~v~~~~~ 128 (449)
...+.+++.+||+||.|. .+ .+..+++.+ .+|++.++..
T Consensus 38 ~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 38 ECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 344556677899999998 43 345555443 5788877553
No 125
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=35.50 E-value=1.4e+02 Score=26.71 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
..+++.++..+..+++..+.. .-+|+.+....+.+-+-+ |+++ .=...|.+.+..|+..|
T Consensus 156 ~~~~~~l~~~~~Dlivlagy~-------~il~~~~l~~~~~~~iNi-----------HpSl--LP~~rG~~p~~~A~~~G 215 (288)
T 3obi_A 156 AAITALIAQTHTDLVVLARYM-------QILSDEMSARLAGRCINI-----------HHSF--LPGFKGAKPYHQAFDRG 215 (288)
T ss_dssp HHHHHHHHHHTCCEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------EEEC--SSCCCSSCHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEhhhhh-------hhCCHHHHhhhcCCeEEe-----------Cccc--ccCCCCchHHHHHHHcC
Confidence 347788888888888887653 457777776654433323 3343 33456999999999999
Q ss_pred CcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+....+-.+. +..+-..-+.+ --+.+... -|.++|.+++.++
T Consensus 216 ~~~~G~Tvh~v~~~~D~GpIi~Q---~~v~i~~~-----dt~~~L~~r~~~~ 259 (288)
T 3obi_A 216 VKLIGATAHYVTSALDEGPIIDQ---DVERISHR-----DTPADLVRKGRDI 259 (288)
T ss_dssp CSEEEEEEEECCSSTTCSCEEEE---EEEECCTT-----CCHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCcCCCeEEE---EEEecCCC-----CCHHHHHHHHHHH
Confidence 9998877642 33333333332 23344444 4889998888775
No 126
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=35.09 E-value=1.1e+02 Score=27.92 Aligned_cols=41 Identities=10% Similarity=-0.135 Sum_probs=30.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCcccc--ccCCCC
Q 039043 3 PWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAIT--KFEPSN 43 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~--~~~~~g 43 (449)
--|+.|-..=++.++.++.++ |..|.|+.++.... .+++.|
T Consensus 35 G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lG 79 (333)
T 3io5_A 35 GPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMG 79 (333)
T ss_dssp ESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhC
Confidence 357788888888888888776 88999998876532 345555
No 127
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=35.09 E-value=2.8e+02 Score=26.49 Aligned_cols=145 Identities=9% Similarity=0.032 Sum_probs=75.4
Q ss_pred CCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPS 334 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~ 334 (449)
+++++.|..|... .+.+..|.+.|.++.++-.. ..+.+.......++.+..---+.+-|..++
T Consensus 12 ~~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~~----------~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~ 74 (457)
T 1pjq_A 12 DRDCLIVGGGDVA-------ERKARLLLEAGARLTVNALT----------FIPQFTVWANEGMLTLVEGPFDETLLDSCW 74 (457)
T ss_dssp TCEEEEECCSHHH-------HHHHHHHHHTTBEEEEEESS----------CCHHHHHHHTTTSCEEEESSCCGGGGTTCS
T ss_pred CCEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcCC----------CCHHHHHHHhcCCEEEEECCCCccccCCcc
Confidence 3568888877654 45556666788877766432 112222222222332222111234456677
Q ss_pred ccceeccCCchh-----HHHHHhhCCcEeccccccchhhHHHHH-----Hhh-hcceeEeeecCCCCccc-HHHHHHHHH
Q 039043 335 VGCFVTHCGSGS-----LSEAMVNECQLVLLPNVGDQIINARLM-----GEE-LKVGVEVEKGDEDGLFT-RDGVCKAVK 402 (449)
Q Consensus 335 ~~~~I~HgG~gs-----~~eal~~GvP~l~~P~~~DQ~~na~~v-----~~~-~G~G~~~~~~~~~~~~~-~~~l~~~i~ 402 (449)
+ +|.--|.-. ..+|-..|+|+-++ |++..+... .+. +-+|+. ...+ ..+ ...|++.|+
T Consensus 75 l--Vi~at~~~~~n~~i~~~a~~~~i~vn~~----d~~e~~~~~~pa~~~~~~l~iaIs-T~Gk---sp~la~~ir~~ie 144 (457)
T 1pjq_A 75 L--AIAATDDDTVNQRVSDAAESRRIFCNVV----DAPKAASFIMPSIIDRSPLMVAVS-SGGT---SPVLARLLREKLE 144 (457)
T ss_dssp E--EEECCSCHHHHHHHHHHHHHTTCEEEET----TCTTSSSEECCEEEEETTEEEEEE-CTTS---CHHHHHHHHHHHH
T ss_pred E--EEEcCCCHHHHHHHHHHHHHcCCEEEEC----CCcccCceEeeeEEEeCCeEEEEE-CCCC---ChHHHHHHHHHHH
Confidence 7 887777654 34566678886222 222222211 112 134444 2221 122 567888888
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhc
Q 039043 403 AVIDDDHSEVGKEIKENHAKWREFLRSE 430 (449)
Q Consensus 403 ~ll~~~~~~~~~~~~~~a~~l~~~~~~~ 430 (449)
++|.+ ....+-+.+.++++.++..
T Consensus 145 ~~l~~----~~~~~~~~~~~~R~~~~~~ 168 (457)
T 1pjq_A 145 SLLPQ----HLGQVARYAGQLRARVKKQ 168 (457)
T ss_dssp HHSCT----THHHHHHHHHHHHHHHHHH
T ss_pred Hhcch----hHHHHHHHHHHHHHHHHhh
Confidence 88864 1245666666777766643
No 128
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=35.08 E-value=24 Score=34.56 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
...+.+++++.+||++|+.. -...+|+++|||++.+
T Consensus 406 ~~el~~~i~~~~pDL~ig~~--~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 406 GYEFEEFVKRIKPDLIGSGI--KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHHHCCSEEEECH--HHHHHHHHTTCCEEES
T ss_pred HHHHHHHHHhcCCcEEEeCc--chhHHHHHcCCCEEec
Confidence 45678888889999999976 2367899999999853
No 129
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=34.78 E-value=16 Score=32.70 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCCccceeccCCchhHHHHHhh------CCcEecccc
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVN------ECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~------GvP~l~~P~ 362 (449)
.+++ +|+=||=||+++++.. ++|++.+|.
T Consensus 35 ~~D~--vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 35 EPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHT 69 (272)
T ss_dssp SCSE--EEEEESHHHHHHHHHHTGGGTTTCEEEEEES
T ss_pred CCCE--EEEEcCcHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 3466 9999999999999875 889999875
No 130
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.77 E-value=67 Score=24.96 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-------CCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-------GIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-------giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. ...+..+++.+ ++|+|.++..
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECC
No 131
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=34.59 E-value=67 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC---ChHHHHHH----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH---WLPPLARK----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~---~~~~~A~~----~giP~v~~~~~~ 129 (449)
.....+++.+||+||.|. .. .+..+++. .++|+|+++...
T Consensus 45 ~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 45 EAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 445556667899999998 53 34444443 378998876644
No 132
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=34.59 E-value=73 Score=23.23 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh----CCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF----GIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~----giP~v~~~~~~ 129 (449)
....++++.+||+||.|. .+ .+..+++.+ .+|++.++...
T Consensus 37 ~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 37 GLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 445566677899999997 43 455555544 57777765543
No 133
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=33.89 E-value=21 Score=32.15 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.7
Q ss_pred hhcCCCccceeccCCchhHHHHHhh----CCcEecccc
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPN 362 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~ 362 (449)
.-..+++ +|+=||=||+++++.. ++|++.++.
T Consensus 60 ~~~~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~~ 95 (292)
T 2an1_A 60 IGQQADL--AVVVGGDGNMLGAARTLARYDINVIGINR 95 (292)
T ss_dssp HHHHCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBCS
T ss_pred cccCCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEEC
Confidence 3345677 9999999999999853 789999873
No 134
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=33.82 E-value=2.1e+02 Score=24.04 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=72.6
Q ss_pred CHHHH-HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHH
Q 039043 270 NKEQF-QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLS 348 (449)
Q Consensus 270 ~~~~~-~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ 348 (449)
+.+.+ ..+...++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=-..|...+.
T Consensus 63 ~r~~~~~~~~~~l~~~~~Dliv~a~y~-------~il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~ 122 (209)
T 1meo_A 63 NRVEFDSAIDLVLEEFSIDIVCLAGFM-------RILSGPFVQKWNGKMLNI-----------HPSL--LPSFKGSNAHE 122 (209)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEEESCC-------SCCCHHHHHHTTTSEEEE-----------ESSS--TTSSCSSCHHH
T ss_pred chhhhhHHHHHHHHhcCCCEEEEcchh-------hhCCHHHHhhhcCCEEEE-----------ccCc--CcCCCCccHHH
Confidence 33344 347777888888888888653 456777766544333333 4454 44457899999
Q ss_pred HHHhhCCcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 039043 349 EAMVNECQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKWR 424 (449)
Q Consensus 349 eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~ 424 (449)
.|+.+|.....+-++ .+..+-...+.+. -+.+... -|.++|.+++.++-. .-+.+.++.+.
T Consensus 123 ~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~~~-------~ll~~~l~~~~ 185 (209)
T 1meo_A 123 QALETGVTVTGCTVHFVAEDVDAGQIILQE---AVPVKRG-----DTVATLSERVKLAEH-------KIFPAALQLVA 185 (209)
T ss_dssp HHHHHTCSEEEEEEEECCC---CCCEEEEE---EEECCTT-----CCHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHcCCCcEEEEEEEECCCCcCCCEEEEE---EEecCCC-----CCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999999998877753 3444444333322 2334444 488889888876522 34555555443
No 135
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=33.61 E-value=95 Score=26.33 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=67.1
Q ss_pred HHHH-HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHH
Q 039043 271 KEQF-QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSE 349 (449)
Q Consensus 271 ~~~~-~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~e 349 (449)
.+.+ .++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=...|...+..
T Consensus 71 r~~~d~~~~~~l~~~~~Dliv~agy~-------~il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~ 130 (209)
T 4ds3_A 71 KEAHEDAILAALDVLKPDIICLAGYM-------RLLSGRFIAPYEGRILNI-----------HPSL--LPLFPGLHTHQR 130 (209)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEESSCC-------SCCCHHHHGGGTTCEEEE-----------ESSC--TTSSCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccc-------cCcCHHHHhhccCCeEEE-----------CCcc--ccCCCChhHHHH
Confidence 3334 347778888888888888653 457777765544333333 5555 555678999999
Q ss_pred HHhhCCcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 350 AMVNECQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 350 al~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
|+.+|+....+-.+ .+..+-...+.+. -+.+... -|.++|.+++.++
T Consensus 131 Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~r~~~~ 179 (209)
T 4ds3_A 131 ALDAGMKLAGCTVHLVTEGMDEGPILAQA---AVPVLDG-----DTAETLAARVLKA 179 (209)
T ss_dssp HHHTTCSEEEEEEEECCC--CCCCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEEEcCCCCCCCeEEEE---EEecCCC-----CCHHHHHHHHHHH
Confidence 99999998877754 2333333333322 2334444 4888888888764
No 136
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=33.56 E-value=16 Score=32.35 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=37.5
Q ss_pred CCCccceeccCCchhHHHHHhh---CCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 332 HPSVGCFVTHCGSGSLSEAMVN---ECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~eal~~---GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
.+++ +|+=||=||+++++.. ++|++.++.. .. |.-. + +.++++.++++++++.
T Consensus 41 ~~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~G-----------~~-Gfl~-----~----~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 41 TADL--IVVVGGDGTVLKAAKKAADGTPMVGFKAG-----------RL-GFLT-----S----YTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CCSE--EEEEECHHHHHHHHTTBCTTCEEEEEESS-----------SC-CSSC-----C----BCGGGHHHHHHHHHTT
T ss_pred CCCE--EEEEeCcHHHHHHHHHhCCCCCEEEEECC-----------CC-CccC-----c----CCHHHHHHHHHHHHcC
Confidence 4566 9999999999999887 8898888632 11 2211 1 4566777777777764
No 137
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=33.56 E-value=72 Score=24.62 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-----CCceEEEecch
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-----GIKSVLYCIIS 129 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-----giP~v~~~~~~ 129 (449)
......+++.+||+||.|. ...+..+++.+ .+|+|+++...
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
No 138
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=33.43 E-value=1.3e+02 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
-|+-|-..-..+||..|+++|++|.++..+..
T Consensus 34 KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 34 KGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred CCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36788889999999999999999999998874
No 139
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=33.34 E-value=1.6e+02 Score=26.38 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+.+-+-+ |+++ .=...|.+.+..|+..|
T Consensus 161 ~~~~~~l~~~~~Dlivla~y~-------~il~~~~l~~~~~~~iNi-----------HpSl--LP~~rG~~p~~~Ai~~G 220 (292)
T 3lou_A 161 AQWLDVFETSGAELVILARYM-------QVLSPEASARLANRAINI-----------HHSF--LPGFKGAKPYHQAHARG 220 (292)
T ss_dssp HHHHHHHHHHTCSEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------EEEC--SSCCCSSCHHHHHHHHT
T ss_pred HHHHHHHHHhCCCEEEecCch-------hhCCHHHHhhhcCCeEEe-----------CCCc--CcCCCCccHHHHHHHcC
Confidence 347777888888888887653 457777776654443333 3343 34456899999999999
Q ss_pred CcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+....+-.+. +..+-..-+.+ --+.+... -|.++|.+++.++
T Consensus 221 ~~~~G~Tvh~v~~~lD~G~Ii~Q---~~v~i~~~-----dt~~~L~~r~~~~ 264 (292)
T 3lou_A 221 VKLIGATAHFVTDDLDEGPIIEQ---VVERVDHS-----YRPEQLLAVGRDV 264 (292)
T ss_dssp CSEEEEEEEECCSSTTCSCEEEE---EEEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCcCCCEEEE---EEEEcCCC-----CCHHHHHHHHHHH
Confidence 9998887642 33333333332 23344444 4889998888765
No 140
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=33.16 E-value=1.2e+02 Score=25.79 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+.+-+-+ |+++ .=...|...+..|+..|
T Consensus 71 ~~~~~~l~~~~~Dliv~agy~-------~Il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~Ai~~G 130 (211)
T 3p9x_A 71 IEVVQQLKEKQIDFVVLAGYM-------RLVGPTLLGAYEGRIVNI-----------HPSL--LPAFPGLHAIEQAIRAN 130 (211)
T ss_dssp HHHHHHHHHTTCCEEEESSCC-------SCCCHHHHHHHTTSEEEE-----------ESSC--TTSSCSSCHHHHHHHTT
T ss_pred HHHHHHHHhcCCCEEEEeCch-------hhcCHHHHhhccCCeEEE-----------CCcc--CCCCCCccHHHHHHHcC
Confidence 347788888888988888653 457777776554333333 4454 44556899999999999
Q ss_pred CcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
.....+-.+ .+..+-...+.+. -+.+... -|.++|.+++.++
T Consensus 131 ~~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~ 174 (211)
T 3p9x_A 131 VKVTGVTIHYVDEGMDTGPIIAQE---AVSIEEE-----DTLETLTTKIQAV 174 (211)
T ss_dssp CSEEEEEEEECCSSSSCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCCCCCEEEEE---EEecCCC-----CCHHHHHHHHHHH
Confidence 998887753 2334443333322 2334444 4888888888764
No 141
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.11 E-value=80 Score=23.77 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-------CCceEEEecch
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-------GIKSVLYCIIS 129 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-------giP~v~~~~~~ 129 (449)
....+.+++.+||+||.|. ...+..+.+.+ ++|+++++...
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
No 142
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.09 E-value=75 Score=26.56 Aligned_cols=37 Identities=14% Similarity=-0.082 Sum_probs=28.5
Q ss_pred HHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEEecch
Q 039043 91 IESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~~~~~ 129 (449)
...-+++...|+||+|. .+..+|+++|+|.+.+.++.
T Consensus 134 ~i~~l~~~G~~vvVG~~--~~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 134 LISKVKTENIKIVVSGK--TVTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp HHHHHHHTTCCEEEECH--HHHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHCCCeEEECCH--HHHHHHHHcCCcEEEEecCH
Confidence 44455667899999986 23789999999999877644
No 143
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.97 E-value=88 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-------CCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-------GIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-------giP~v~~~~ 127 (449)
....+.+++.+||+||.|. ...+..+.+.+ ++|++.++.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
No 144
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=32.93 E-value=1e+02 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-----CCceEEEecc
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-----giP~v~~~~~ 128 (449)
...+.+++.+||+||.|. .+ .+..+.+.+ .+|++.++..
T Consensus 36 ~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 36 EALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 344556667899999998 43 344444432 5788776554
No 145
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=32.81 E-value=76 Score=23.76 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-----CCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-----giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. ...+..+++.+ .+|++.++..
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecC
No 146
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=32.78 E-value=2e+02 Score=23.45 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCC-ChhHHHhcCCCeEEE---eccchhhhhhc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESAL-PEGFEERVKGRGFIH---GGWVQQQLILK 331 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~l-p~~~~~~~~~~~~~~---~~~~pq~~lL~ 331 (449)
|.+++.-.||..... ...+++.|.+.|..+.+++...- ..-+ |..+.. ... .++. ..|+++.++-.
T Consensus 6 k~IllgvTGs~aa~k---~~~ll~~L~~~g~~V~vv~T~~A-----~~fi~~~~l~~-l~~-~v~~~~~~~~~~hi~l~~ 75 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN---ISHYIIELKSKFDEVNVIASTNG-----RKFINGEILKQ-FCD-NYYDEFEDPFLNHVDIAN 75 (175)
T ss_dssp CEEEEEECSSGGGGG---HHHHHHHHTTTCSEEEEEECTGG-----GGGSCHHHHHH-HCS-CEECTTTCTTCCHHHHHH
T ss_pred CEEEEEEeCHHHHHH---HHHHHHHHHHCCCEEEEEECcCH-----HHHhhHHHHHH-hcC-CEEecCCCCccccccccc
Confidence 446666667776542 45566777777888777776531 1112 122221 111 2221 13455666666
Q ss_pred CCCccceeccCCchhHH-------------HHHhhCCcEecccccc----ch---hhHHHHHHhhhcce
Q 039043 332 HPSVGCFVTHCGSGSLS-------------EAMVNECQLVLLPNVG----DQ---IINARLMGEELKVG 380 (449)
Q Consensus 332 ~~~~~~~I~HgG~gs~~-------------eal~~GvP~l~~P~~~----DQ---~~na~~v~~~~G~G 380 (449)
.+|+ .+|.-+=+||+. -++..++|+++.|-.. +. -.|-.++.+. |+=
T Consensus 76 ~aD~-~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~-G~~ 142 (175)
T 3qjg_A 76 KHDK-IIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDY-GVS 142 (175)
T ss_dssp TCSE-EEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHHHHHHHHHHT-TCE
T ss_pred hhCE-EEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHHHHHHHHHHC-CCE
Confidence 6665 355555555544 3577899999999422 21 3466667766 764
No 147
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=32.72 E-value=1.8e+02 Score=25.93 Aligned_cols=102 Identities=11% Similarity=0.136 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhC
Q 039043 275 QELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNE 354 (449)
Q Consensus 275 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~G 354 (449)
.++++.++..+..+++..+.. .-+|+.+....+.+-+-+ |+++ .=...|.+.+..|+..|
T Consensus 156 ~~~~~~l~~~~~Dlivla~y~-------~il~~~~l~~~~~~~iNi-----------HpSl--LP~~rG~~p~~~Ai~~G 215 (286)
T 3n0v_A 156 RKVLQVIEETGAELVILARYM-------QVLSPELCRRLDGWAINI-----------HHSL--LPGFKGAKPYHQAYNKG 215 (286)
T ss_dssp HHHHHHHHHHTCSEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------EECS--STTCCCSCHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEecccc-------cccCHHHHhhhcCCeEEe-----------cccc--ccCCCCccHHHHHHHcC
Confidence 347777888888888887653 457777776654433323 3343 33456899999999999
Q ss_pred CcEecccccc--chhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 355 CQLVLLPNVG--DQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 355 vP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
+....+-.+. +..+-..-+.+ --+.+... -|.++|.+++.++
T Consensus 216 ~~~~G~Tvh~v~~~lD~GpIi~Q---~~~~i~~~-----dt~~~L~~r~~~~ 259 (286)
T 3n0v_A 216 VKMVGATAHYINNDLDEGPIIAQ---GVEVVDHS-----HYPEDLIAKGRDI 259 (286)
T ss_dssp CSEEEEEEEECCSSTTCSCEEEE---EEEECCTT-----CCHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCCCCceeEE---EEEEcCCC-----CCHHHHHHHHHHH
Confidence 9998887642 33333333332 23334444 4889998888775
No 148
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.71 E-value=75 Score=23.52 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-----CCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-----giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. ...+..+.+.+ .+|++.++..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
No 149
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=32.70 E-value=1.6e+02 Score=22.20 Aligned_cols=37 Identities=24% Similarity=0.092 Sum_probs=24.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEE
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVAL 292 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 292 (449)
+.+|+|+.||-.....+.+..+...++....++.+.+
T Consensus 6 ~alllv~HGS~~~~~~~~~~~l~~~l~~~~~~V~~a~ 42 (126)
T 3lyh_A 6 HQIILLAHGSSDARWCETFEKLAEPTVESIENAAIAY 42 (126)
T ss_dssp EEEEEEECCCSCHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 4599999999754344567777777765445555553
No 150
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=32.41 E-value=81 Score=24.21 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-----CCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-----giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. ...+..+++.+ ++|+|.++..
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCC
No 151
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=32.28 E-value=1.2e+02 Score=29.80 Aligned_cols=34 Identities=9% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 90 AIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
.+.+++++.+||++|.+. ....+|+++|||++.+
T Consensus 363 el~~~i~~~~pDl~ig~~--~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 363 VVGDAIARVEPAAIFGTQ--MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHHCCSEEEECH--HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCCEEEecc--chHHHHHhcCCCeEec
Confidence 677888888999999875 2456778999999864
No 152
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=32.26 E-value=17 Score=28.89 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 12 PFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 12 p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
-.+=++..|.++||+|++++++.....++-
T Consensus 24 ~~lYl~~~Lk~~G~~v~VA~npAAlkLlev 53 (157)
T 1kjn_A 24 LAIYTSHKLKKKGFRVTVTANPAALRLVQV 53 (157)
T ss_dssp HHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeeEEecCHHHHhheec
Confidence 346678999999999999999998877653
No 153
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=32.24 E-value=17 Score=33.05 Aligned_cols=32 Identities=9% Similarity=0.026 Sum_probs=24.4
Q ss_pred hhcCCCccceeccCCchhHHHHHhh----CCcEecccc
Q 039043 329 ILKHPSVGCFVTHCGSGSLSEAMVN----ECQLVLLPN 362 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs~~eal~~----GvP~l~~P~ 362 (449)
....+++ +|+-||-||+++++.. ++|++.++.
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~ 107 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNL 107 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeC
Confidence 3445677 9999999999999854 899999874
No 154
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=32.05 E-value=1.4e+02 Score=25.02 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=29.0
Q ss_pred eEEEeccchh-hh-hhcCCCccceeccCCchhHHHHHh---------hCCcEecccc
Q 039043 317 GFIHGGWVQQ-QL-ILKHPSVGCFVTHCGSGSLSEAMV---------NECQLVLLPN 362 (449)
Q Consensus 317 ~~~~~~~~pq-~~-lL~~~~~~~~I~HgG~gs~~eal~---------~GvP~l~~P~ 362 (449)
..+++++... .. ++.+++. .++--||.||+-|... +++|++.+-.
T Consensus 100 ~~i~~~~~~~Rk~~m~~~sda-~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~ 155 (199)
T 3qua_A 100 ELIVTDTMRERKREMEHRSDA-FIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDP 155 (199)
T ss_dssp EEEEESSHHHHHHHHHHHCSE-EEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred eeEEcCCHHHHHHHHHHhcCc-cEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcC
Confidence 3444455543 33 4445554 4667888999988743 5899998853
No 155
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=31.67 E-value=27 Score=28.87 Aligned_cols=32 Identities=6% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
..-...+.+.|+++|++|.++.++...+++..
T Consensus 18 a~k~~~ll~~L~~~g~~V~vv~T~~A~~fi~~ 49 (175)
T 3qjg_A 18 SINISHYIIELKSKFDEVNVIASTNGRKFING 49 (175)
T ss_dssp GGGHHHHHHHHTTTCSEEEEEECTGGGGGSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCHHHHhhH
Confidence 33478899999999999999999998877764
No 156
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=31.67 E-value=2.2e+02 Score=24.07 Aligned_cols=113 Identities=17% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=...|...+..|+.+|.
T Consensus 70 ~~~~~l~~~~~Dliv~agy~-------~il~~~~l~~~~~~~iNi-----------HpSl--LP~yrG~~pi~~ai~~G~ 129 (212)
T 1jkx_A 70 ELIHEIDMYAPDVVVLAGFM-------RILSPAFVSHYAGRLLNI-----------HPSL--LPKYPGLHTHRQALENGD 129 (212)
T ss_dssp HHHHHHGGGCCSEEEESSCC-------SCCCHHHHHHTTTSEEEE-----------ESSC--TTSCCSSCHHHHHHHTTC
T ss_pred HHHHHHHhcCCCEEEEeChh-------hhCCHHHHhhccCCEEEE-----------ccCc--ccCCCCccHHHHHHHcCC
Confidence 47777888888888887653 457777776554433433 4444 444568999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKW 423 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l 423 (449)
....+-++ .+..+-..-+.+. -+.+... -|.++|.+++.++ .- .-+.+.++.+
T Consensus 130 ~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~-~~------~ll~~~l~~~ 184 (212)
T 1jkx_A 130 EEHGTSVHFVTDELDGGPVILQA---KVPVFAG-----DSEDDITARVQTQ-EH------AIYPLVISWF 184 (212)
T ss_dssp SEEEEEEEECCSSTTCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH-HH------HHHHHHHHHH
T ss_pred CceEEEEEEEcccccCCCEEEEE---EEEcCCC-----CCHHHHHHHHHHH-HH------HHHHHHHHHH
Confidence 98877754 2444444333322 2234443 4888998888765 22 3455555444
No 157
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=31.60 E-value=2.1e+02 Score=23.20 Aligned_cols=141 Identities=12% Similarity=0.100 Sum_probs=77.2
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCcc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVG 336 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~ 336 (449)
|.|-|-+||.+ +....++....|+..|..+-+.+-+ ....|+.+. .|+.... -...++
T Consensus 6 p~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~S-------aHRtp~~l~-----------~~~~~~~-~~g~~V- 63 (166)
T 3oow_A 6 VQVGVIMGSKS--DWSTMKECCDILDNLGIGYECEVVS-------AHRTPDKMF-----------DYAETAK-ERGLKV- 63 (166)
T ss_dssp EEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECC-------TTTCHHHHH-----------HHHHHTT-TTTCCE-
T ss_pred CeEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEc-------CcCCHHHHH-----------HHHHHHH-hCCCcE-
Confidence 46777788776 7778888888899899876555433 233444332 1111100 012344
Q ss_pred ceeccCCchhHHH---HHhhCCcEeccccccc---hhhHHHHHHhhhcce--eEe-eecCCCCcccHHHHHHHHHHHhcC
Q 039043 337 CFVTHCGSGSLSE---AMVNECQLVLLPNVGD---QIINARLMGEELKVG--VEV-EKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 337 ~~I~HgG~gs~~e---al~~GvP~l~~P~~~D---Q~~na~~v~~~~G~G--~~~-~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
+|.=+|.-.-+- |-..-+|+|.+|...- -.+--..+.++ --| +.. ... +.+..+..-++..|..+ .|
T Consensus 64 -iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqm-p~gvpVatV~I~-~ag~~nAa~lAa~Il~~-~d 139 (166)
T 3oow_A 64 -IIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQM-PAGIPVATFAIG-MAGAKNAALFAASILQH-TD 139 (166)
T ss_dssp -EEEEECSSCCHHHHHHHTCSSCEEEEECCCTTTTTHHHHHHHHTC-CTTSCCEECCST-HHHHHHHHHHHHHHHGG-GC
T ss_pred -EEEECCcchhhHHHHHhccCCCEEEeecCcCCCCCHHHHHHHhcC-CCCCceEEEecC-CccchHHHHHHHHHHcC-CC
Confidence 887777543222 2334689999998432 22212223333 223 211 111 00014666666666553 56
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 039043 408 DHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 408 ~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
++++++.+.+++.+++
T Consensus 140 ------~~l~~kl~~~r~~~~~ 155 (166)
T 3oow_A 140 ------INIAKALAEFRAEQTR 155 (166)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 8888888888887763
No 158
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=31.41 E-value=1.7e+02 Score=24.73 Aligned_cols=119 Identities=10% Similarity=0.116 Sum_probs=74.7
Q ss_pred CHHHHH-HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHH
Q 039043 270 NKEQFQ-ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLS 348 (449)
Q Consensus 270 ~~~~~~-~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~ 348 (449)
+.+.+. ++++.++..+..+++..+.. .-+|..+....+..-+-+ |+++ .=...|...+.
T Consensus 66 ~~~~~~~~~~~~l~~~~~Dliv~a~y~-------~il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~ 125 (212)
T 3av3_A 66 SKAAFESEILRELKGRQIDWIALAGYM-------RLIGPTLLSAYEGKIVNI-----------HPSL--LPAFPGKDAIG 125 (212)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEESSCC-------SCCCHHHHHHTTTCEEEE-----------ESSC--TTSSCSTTHHH
T ss_pred chhhhHHHHHHHHHhcCCCEEEEchhh-------hhCCHHHHhhhcCCEEEE-----------ecCc--CCCCCCcCHHH
Confidence 344444 47778888888888887653 457777776554333333 5555 55567899999
Q ss_pred HHHhhCCcEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 039043 349 EAMVNECQLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDDDHSEVGKEIKENHAKW 423 (449)
Q Consensus 349 eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~a~~l 423 (449)
.|+.+|.....+-.+ .+..+-..-+.+. -+.+... -|.++|.+++.++ +- .-+.+.++.+
T Consensus 126 ~Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~r~~~~-~~------~ll~~~l~~~ 187 (212)
T 3av3_A 126 QAYRAGVSETGVTVHYVDEGMDTGPVIAQR---VVPIVPG-----EPIEALEERIHQV-EH------ELYPTVLRML 187 (212)
T ss_dssp HHHHHTCSEEEEEEEECCSSSSCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH-HH------HHHHHHHHHH
T ss_pred HHHHcCCCeEEEEEEEECCCCCCCCEEEEE---EEecCCC-----CCHHHHHHHHHHH-HH------HHHHHHHHHH
Confidence 999999998887754 2344443333322 2234444 4888898888764 22 3455555444
No 159
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=31.21 E-value=29 Score=29.39 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=28.7
Q ss_pred CCHH-HHHHHHHHHHhCCCEEEEEcCCccccccCCC
Q 039043 8 GHLT-PFLHIANKLAERGHRISFLLPAKAITKFEPS 42 (449)
Q Consensus 8 GH~~-p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 42 (449)
+... -.+.+.+.|+++|++|.++.++.....+...
T Consensus 18 ~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~ 53 (201)
T 3lqk_A 18 HCTYHEVLPQMERLVELGAKVTPFVTHTVQTTDTKF 53 (201)
T ss_dssp GGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCT
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHHHHh
Confidence 4444 6789999999999999999999887776543
No 160
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=31.11 E-value=45 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcC
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLP 32 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 32 (449)
++.|-..-...||..|+++|.+|.++..
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4456677788999999999999999987
No 161
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=31.02 E-value=81 Score=23.09 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-----CCceEEEecch
Q 039043 91 IESVLRHLKPDFVFFDF-TH--WLPPLARKF-----GIKSVLYCIIS 129 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-----giP~v~~~~~~ 129 (449)
....+++.+||+||.|. .+ .+..+++.+ .+|++.++...
T Consensus 39 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 39 ALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 34445566899999997 43 344444433 67888776543
No 162
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.00 E-value=95 Score=22.37 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCEEEEcC-CC--ChHHHHHH----hCCceEEEecch
Q 039043 91 IESVLRHLKPDFVFFDF-TH--WLPPLARK----FGIKSVLYCIIS 129 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~-~~--~~~~~A~~----~giP~v~~~~~~ 129 (449)
....+++.+||+||.|. .+ .+..+++. -.+|++.++...
T Consensus 37 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 37 ALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 33455566899999998 43 34444443 368888776544
No 163
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=30.67 E-value=64 Score=29.55 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred ccccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccc
Q 039043 246 WETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWV 324 (449)
Q Consensus 246 l~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~ 324 (449)
+...|..++. +-.|+..|... ..++.++..++.|+..|.++++.-..........+.--+ +--
T Consensus 5 ~P~~L~~GD~--I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~--------------Ra~ 68 (327)
T 4h1h_A 5 IPAKLKQGDE--IRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRS--------------RVA 68 (327)
T ss_dssp CCCCCCTTCE--EEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHH--------------HHH
T ss_pred cCCCCCCCCE--EEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHH--------------HHH
Q ss_pred hhhhhhcCCCccceecc-CCchhH
Q 039043 325 QQQLILKHPSVGCFVTH-CGSGSL 347 (449)
Q Consensus 325 pq~~lL~~~~~~~~I~H-gG~gs~ 347 (449)
+-++.+..+++++++|- ||+|++
T Consensus 69 dL~~a~~Dp~i~aI~~~rGG~g~~ 92 (327)
T 4h1h_A 69 DIHEAFNDSSVKAILTVIGGFNSN 92 (327)
T ss_dssp HHHHHHHCTTEEEEEESCCCSCGG
T ss_pred HHHHHhhCCCCCEEEEcCCchhHH
No 164
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=30.40 E-value=78 Score=17.94 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
.+|.++|.+++... ......+.++++.+.
T Consensus 4 nQLEdkVEeLl~~~-----~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASAN-----YHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh-----HHHHHHHHHHHHHhc
Confidence 46889999998741 567777777777654
No 165
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=30.32 E-value=89 Score=28.12 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=34.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhC--CCEEEEEcCCccccccCCC
Q 039043 2 YPWFAMGHLTPFLHIANKLAER--GHRISFLLPAKAITKFEPS 42 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 42 (449)
+-..+.|++.-+..+.++|+++ +.+|++++.+.+.+.++..
T Consensus 6 i~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (326)
T 2gt1_A 6 VKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWH 48 (326)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHTS
T ss_pred EeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhcC
Confidence 3456789999999999999987 8999999999988877654
No 166
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.19 E-value=46 Score=32.14 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+++++.+||++|++. ....+|+++|||++.+
T Consensus 375 ~~l~~~i~~~~pDl~ig~~--~~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 375 FDVHQWIKNEGVDLLISNT--YGKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHHSCCSEEEESG--GGHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCCEEEeCc--chHHHHHHcCCCEEEe
Confidence 4577888899999999886 2467889999999864
No 167
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=29.96 E-value=1.1e+02 Score=22.25 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~----~giP~v~~~~~~ 129 (449)
.....+++.+||+||.|. .+ .+..+++. -.+|++.++...
T Consensus 38 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 38 EMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 344456667899999998 43 34444443 367887776543
No 168
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=29.43 E-value=41 Score=28.57 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=24.1
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecch
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~ 129 (449)
.||+|| .|. ...+..=|.++|||+|.++-+.
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 148 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSN 148 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCC
Confidence 699876 576 5567777889999999986644
No 169
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=29.28 E-value=2.7e+02 Score=23.81 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=67.0
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=-..|...+..|+.+|.
T Consensus 92 ~~~~~l~~~~~Dliv~agy~-------~IL~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~Ai~~G~ 151 (229)
T 3auf_A 92 ALAERLQAYGVDLVCLAGYM-------RLVRGPMLTAFPNRILNI-----------HPSL--LPAFPGLEAQRQALEHGV 151 (229)
T ss_dssp HHHHHHHHTTCSEEEESSCC-------SCCCHHHHHHSTTCEEEE-----------ESSC--TTSSCSSCHHHHHHHHTC
T ss_pred HHHHHHHhcCCCEEEEcChh-------HhCCHHHHhhccCCEEEE-----------ccCc--CcCCCCcCHHHHHHHcCC
Confidence 47777888888988888653 457777776554333333 4444 444569999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
....+-++ .+..+-...+.+. -+.+... -|.++|.+++.++
T Consensus 152 ~~tGvTvh~v~~~~D~G~Ii~Q~---~v~I~~~-----dt~~~L~~rl~~~ 194 (229)
T 3auf_A 152 KVAGCTVHFVTAGVDEGPIILQA---AVPVLEG-----DTVEDLRRRILAE 194 (229)
T ss_dssp SEEEEEEEECCSSTTCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred CeEEEEEEEECCCCcCCCEEEEE---EEecCCC-----CCHHHHHHHHHHH
Confidence 99877753 3444444444332 2334444 4888998888765
No 170
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=29.28 E-value=98 Score=28.70 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAI 36 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 36 (449)
--|+.|-..=++.++..+...|..|.|+..+...
T Consensus 68 GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 68 GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3467788888889999998899999999877643
No 171
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.27 E-value=87 Score=24.12 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCEEEEcC---CCChHHHHHHh-----CCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF---THWLPPLARKF-----GIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~-----giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. ...+..+.+.+ .+|+|+++..
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECC
No 172
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=29.19 E-value=64 Score=23.58 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=34.6
Q ss_pred hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 353 NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
..+|++++ ..++........+. |+--.+.+. ++.++|..+|++++..
T Consensus 79 ~~~~ii~~--~~~~~~~~~~~~~~-g~~~~l~kp-----~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII--GNPDGFAQHRKLKA-HADEYVAKP-----VDADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE--ECGGGHHHHHHSTT-CCSEEEESS-----CCHHHHHHHHHHHHCC
T ss_pred cCCCEEEE--ecCCchhHHHHHHh-CcchheeCC-----CCHHHHHHHHHHHHcC
Confidence 57899998 44444555556666 876677765 7999999999998764
No 173
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.10 E-value=83 Score=17.83 Aligned_cols=29 Identities=3% Similarity=0.219 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
.+|.++|.++|... .+....+.++++.+.
T Consensus 4 nQLE~kVEeLl~~n-----~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKN-----XHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhh-----hhHHHHHHHHHHHHh
Confidence 47889999999731 778888888887764
No 174
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=29.05 E-value=67 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCCccceecc-CCchhHHHHHhhCCcEecccc
Q 039043 332 HPSVGCFVTH-CGSGSLSEAMVNECQLVLLPN 362 (449)
Q Consensus 332 ~~~~~~~I~H-gG~gs~~eal~~GvP~l~~P~ 362 (449)
.+|+ +|++ .+.....-|-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 6887 7777 555666677889999988743
No 175
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.58 E-value=74 Score=20.28 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHhcc
Q 039043 414 KEIKENHAKWREFLRSERLENSYLDGFVQKLHGLL 448 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (449)
.+.+.--++|+..+..+.-+.+.++.++..+-+..
T Consensus 20 ~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 20 QELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666677777777766667778888888775543
No 176
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.56 E-value=85 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.014 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCCCEEEEcC-C--CChHHHHHH-------hCCceEEEecc
Q 039043 89 PAIESVLRHLKPDFVFFDF-T--HWLPPLARK-------FGIKSVLYCII 128 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~--~~~~~~A~~-------~giP~v~~~~~ 128 (449)
....+.+++.+||+||.|. . ..+..+++. .++|++.++..
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 3455566778899999997 3 334444432 35677766543
No 177
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.45 E-value=42 Score=32.75 Aligned_cols=36 Identities=8% Similarity=-0.120 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
...+.+++++.+||++|+.. -...+|+++|||++.+
T Consensus 390 ~~el~~~i~~~~pDL~ig~~--~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 390 ARVLLKTVDEYQADILIAGG--RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHHTTCSEEECCG--GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHHhcCCCEEEECC--chhHHHHHcCCCEEEe
Confidence 45678888899999999865 3457899999999744
No 178
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=28.37 E-value=42 Score=26.37 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCcc------ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHH
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKA------ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTA 83 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~------~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (449)
+.|+++++++|.++|.+|+++ .... .+.+++.+. . +.+..+.. . +. .... +-......
T Consensus 30 iaPl~sm~~~l~~~~~~v~l~-g~R~~~~~~~~~el~~l~~--~-~~~~~~~~---~--~~--~~~~----d~~~g~~G- 93 (142)
T 3lyu_A 30 IVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAVT--R-HIVEPVPL---N--PN--QDFL----ANMKNVSQ- 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-EEEEGGGCCSHHHHHTTSS--E-EEEEEECC---C--TT--SCHH----HHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHHh--h-eEEEEeec---c--cc--cCCC----CCCCCCcc-
Confidence 689999999999999999998 4432 233333321 1 33332220 0 00 0000 00000111
Q ss_pred HhhcHHHHHHHHhhcCCC-EEEEcC---CCChHHHHHHhCCceE
Q 039043 84 MDLTEPAIESVLRHLKPD-FVFFDF---THWLPPLARKFGIKSV 123 (449)
Q Consensus 84 ~~~~~~~~~~ll~~~~pD-~vI~D~---~~~~~~~A~~~giP~v 123 (449)
...+.+.+++...+.| +.+|.+ .-.+..++++.|||..
T Consensus 94 --~v~~~l~~~~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~~~~ 135 (142)
T 3lyu_A 94 --RLKEKVRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGVPML 135 (142)
T ss_dssp --HHHHHHHHHHHSSCCSEEEEESCHHHHHHHHHHHHHHTCCBC
T ss_pred --chhHHHHHhcccCCCCEEEEECCHHHHHHHHHHHHHcCCchh
Confidence 1123455556555666 567877 3455678889999975
No 179
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.79 E-value=1.2e+02 Score=23.30 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH-----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK-----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~-----~giP~v~~~~~~ 129 (449)
...+.+++.+||+||+|. .. .+..+++. -++|+++++...
T Consensus 42 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 42 EAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 344556677899999998 43 34444433 268888776543
No 180
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=27.78 E-value=62 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
..+...|++.|.++|.+|.|..++.
T Consensus 40 Q~~v~el~~~L~~~G~~V~faIHPV 64 (180)
T 1pno_A 40 QHALREMADVLKKEGVEVSYAIHPV 64 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4678889999999999999998876
No 181
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.73 E-value=1.3e+02 Score=21.65 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH-----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK-----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~-----~giP~v~~~~~~ 129 (449)
.....+++.+||+||.|. .+ .+..+.+. ..+|++.++...
T Consensus 35 ~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 35 EADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 344556677899999998 43 34444443 257888776543
No 182
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=27.41 E-value=63 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
..+.-.|++.|.++|.+|.|..++.
T Consensus 39 Q~~v~el~~~L~~~G~~V~faIHPV 63 (184)
T 1d4o_A 39 QYPIADLVKMLSEQGKKVRFGIHPV 63 (184)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4678899999999999999998876
No 183
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=27.34 E-value=1.6e+02 Score=22.50 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=33.2
Q ss_pred hhCCcEeccccccchhhHHHHHHhhhc-ceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 352 VNECQLVLLPNVGDQIINARLMGEELK-VGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 352 ~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
...+|+|++--..|... ...+.+. | +--.+.+. ++.++|.++|++++..
T Consensus 74 ~~~~~ii~~s~~~~~~~-~~~~~~~-g~~~~~l~KP-----~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 74 SPNSVYLMLTGNQDLTT-AMEAVNE-GQVFRFLNKP-----CQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CSSCEEEEEECGGGHHH-HHHHHHH-TCCSEEEESS-----CCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCHHH-HHHHHHc-CCeeEEEcCC-----CCHHHHHHHHHHHHHH
Confidence 34677777665554433 3344445 7 64456665 7999999999999986
No 184
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=27.10 E-value=3.1e+02 Score=24.17 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=25.0
Q ss_pred cccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 039043 249 LLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALK 293 (449)
Q Consensus 249 ~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 293 (449)
+++-. ++.++.|..|... .+.+..|...|.++.++-.
T Consensus 8 ~~~l~-~k~VLVVGgG~va-------~rka~~Ll~~Ga~VtViap 44 (274)
T 1kyq_A 8 AHQLK-DKRILLIGGGEVG-------LTRLYKLMPTGCKLTLVSP 44 (274)
T ss_dssp EECCT-TCEEEEEEESHHH-------HHHHHHHGGGTCEEEEEEE
T ss_pred EEEcC-CCEEEEECCcHHH-------HHHHHHHHhCCCEEEEEcC
Confidence 34443 4668888888765 5566677778888776643
No 185
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=27.04 E-value=68 Score=27.76 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.1
Q ss_pred HHHhhcCCCEEEEcC-CCC--hHHHHHHhCCceEEEe
Q 039043 93 SVLRHLKPDFVFFDF-THW--LPPLARKFGIKSVLYC 126 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~~~--~~~~A~~~giP~v~~~ 126 (449)
+.+.+.+||+||+.. ... ...--++.|+|++.+.
T Consensus 53 E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 53 EGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 345567999999877 432 2333456799999874
No 186
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=26.97 E-value=1.7e+02 Score=23.59 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=34.2
Q ss_pred hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhcC
Q 039043 353 NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVIDD 407 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~~ 407 (449)
..+|+|++--..|. ..+..+.+. |+--.+.+. ++.++|..+|+.++..
T Consensus 78 ~~~~ii~lt~~~~~-~~~~~a~~~-ga~~~l~KP-----~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 78 PRTTLVALVEYESP-AVLSQIIEL-ECHGVITQP-----LDAHRVLPVLVSARRI 125 (196)
T ss_dssp TTCEEEEEECCCSH-HHHHHHHHH-TCSEEEESS-----CCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCh-HHHHHHHHc-CCCeeEecC-----cCHHHHHHHHHHHHHH
Confidence 45788777655444 355556667 887677765 7889999999888764
No 187
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=26.93 E-value=2.5e+02 Score=22.75 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=77.8
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
+|.|-|-+||.+ +....+.....|+..|.++-+.+-+- ...|+.+.. |+... --...++
T Consensus 6 ~~~V~IimgS~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa-------HR~p~~~~~-----------~~~~a-~~~g~~V 64 (169)
T 3trh_A 6 KIFVAILMGSDS--DLSTMETAFTELKSLGIPFEAHILSA-------HRTPKETVE-----------FVENA-DNRGCAV 64 (169)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT-------TTSHHHHHH-----------HHHHH-HHTTEEE
T ss_pred CCcEEEEECcHH--hHHHHHHHHHHHHHcCCCEEEEEEcc-------cCCHHHHHH-----------HHHHH-HhCCCcE
Confidence 456777788776 77788888888999998865555432 334443221 11100 0012334
Q ss_pred cceeccCCchhHHH---HHhhCCcEecccccc-chhhHH--HHHHh--hhcceeE-eeecCCCCcccHHHHHHHHHHHhc
Q 039043 336 GCFVTHCGSGSLSE---AMVNECQLVLLPNVG-DQIINA--RLMGE--ELKVGVE-VEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 336 ~~~I~HgG~gs~~e---al~~GvP~l~~P~~~-DQ~~na--~~v~~--~~G~G~~-~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
+|.=+|.-.-+- |-..-+|+|.+|... +-.... ..+.+ . |+.+. +...+ ....+..-++..|.. ++
T Consensus 65 --iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmp~-GvPVatV~I~~-a~~~nAa~lAa~Il~-~~ 139 (169)
T 3trh_A 65 --FIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPG-GVPVACTAIGK-AGAKNAAILAAQIIA-LQ 139 (169)
T ss_dssp --EEEEECSSCCHHHHHHHTCSSCEEEEECCCSTTTTHHHHHHHHCCCT-TSCCEECCSTH-HHHHHHHHHHHHHHH-TT
T ss_pred --EEEECChhhhhHHHHHhcCCCCEEEeecCCCCCCCHHHHHHhhcCCC-CCceEEEecCC-ccchHHHHHHHHHHc-CC
Confidence 777766533222 233468999999853 221222 23333 2 33211 11110 001456666666655 35
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh
Q 039043 407 DDHSEVGKEIKENHAKWREFLRS 429 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~~ 429 (449)
| +.++++.+..++.+++
T Consensus 140 d------~~l~~kl~~~r~~~~~ 156 (169)
T 3trh_A 140 D------KSIAQKLVQQRTAKRE 156 (169)
T ss_dssp C------HHHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHHH
Confidence 6 7888888888887764
No 188
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=26.85 E-value=1.1e+02 Score=23.27 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-----CCceEEEec
Q 039043 91 IESVLRHLKPDFVFFDF-TH--WLPPLARKF-----GIKSVLYCI 127 (449)
Q Consensus 91 ~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-----giP~v~~~~ 127 (449)
..+.+++.+||+||.|. .+ .+..+++.+ ++|+|.++.
T Consensus 41 al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 41 AIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 34456667899999998 43 344444432 577776644
No 189
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=26.81 E-value=29 Score=34.40 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCC
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 33 (449)
||.|++ .-+|+++|+++||+|+++++.
T Consensus 26 GGLadv--v~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 26 GGLGDV--LGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp SHHHHH--HHHHHHHHHTTTCEEEEEEEC
T ss_pred CcHHHH--HHHHHHHHHHcCCeEEEEecC
Confidence 444444 457899999999999999853
No 190
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.79 E-value=1.1e+02 Score=21.78 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH-------hCCceEEEecc
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK-------FGIKSVLYCII 128 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~-------~giP~v~~~~~ 128 (449)
.....+++.+||+||.|. .. .+..+.+. .++|++.++..
T Consensus 36 ~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 36 TALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 344555666899999997 43 33333332 36788877553
No 191
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.73 E-value=1.2e+02 Score=22.28 Aligned_cols=40 Identities=18% Similarity=-0.099 Sum_probs=25.6
Q ss_pred HHHHHHhhc-CCCEEEEcC-CC---ChHHHHHHh-----CCceEEEecch
Q 039043 90 AIESVLRHL-KPDFVFFDF-TH---WLPPLARKF-----GIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~-~pD~vI~D~-~~---~~~~~A~~~-----giP~v~~~~~~ 129 (449)
...+.+++. +||+||.|. .. .+..+++.+ ++|++.++...
T Consensus 40 ~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 40 KAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 445566666 899999998 43 344444432 68888775543
No 192
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.61 E-value=90 Score=28.31 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhc
Q 039043 19 KLAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHL 98 (449)
Q Consensus 19 ~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 98 (449)
.|.....+..+.+++.|.-+.++.| ++...+. ++..+.+.+ ......+.+.+++.
T Consensus 184 ~l~~~~~~~~v~~H~af~Yfa~~yG-----l~~~~~~-----~~~~~~eps---------------~~~l~~l~~~ik~~ 238 (312)
T 2o1e_A 184 TAKKAEKKEFITQHTAFGYLAKEYG-----LKQVPIA-----GLSPDQEPS---------------AASLAKLKTYAKEH 238 (312)
T ss_dssp HHHSCSCCEEEESSCTTHHHHHHTT-----CEEEECS-----SCCSSSCCC---------------HHHHHHHHHHTTSS
T ss_pred HhhccCCCEEEEECCchHHHHHHCC-----CeEEEee-----ccCCCCCCC---------------HHHHHHHHHHHHHc
Confidence 3443344556667888888888888 7766542 222111111 01234677778888
Q ss_pred CCCEEEEcC-CCC--hHHHHHHhCCceEEE
Q 039043 99 KPDFVFFDF-THW--LPPLARKFGIKSVLY 125 (449)
Q Consensus 99 ~pD~vI~D~-~~~--~~~~A~~~giP~v~~ 125 (449)
+..+|+++. ... +..+|+..|++++.+
T Consensus 239 ~v~~If~e~~~~~~~~~~ia~e~g~~v~~l 268 (312)
T 2o1e_A 239 NVKVIYFEEIASSKVADTLASEIGAKTEVL 268 (312)
T ss_dssp CCCEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred CCCEEEEeCCCChHHHHHHHHHhCCcEEEe
Confidence 999999998 432 567899999998754
No 193
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=26.40 E-value=95 Score=23.35 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh----CCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF----GIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~----giP~v~~~~~~ 129 (449)
...+.+++.+||+||.|. .+ .+..+++.+ .+|++.++...
T Consensus 39 ~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 39 EAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 344556667899999998 43 345455443 67888776543
No 194
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=26.37 E-value=44 Score=32.18 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=29.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCcccc
Q 039043 3 PWFAMGHLTPFLHIANKLAERGHRISFLLPAKAIT 37 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 37 (449)
..|+.|-..=++.+|...+.+|..|.|++.+...+
T Consensus 204 G~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 204 ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKK 238 (444)
T ss_dssp ECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTT
T ss_pred eCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 45888889999999999998899999999886544
No 195
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.33 E-value=47 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=24.4
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++.+..
T Consensus 111 ~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~ 145 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMREAVEIGIPIVALVDTEN 145 (202)
T ss_dssp CCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTC
T ss_pred CCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCC
Confidence 899876 576 55667778899999998876543
No 196
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=26.27 E-value=4.2e+02 Score=25.08 Aligned_cols=137 Identities=8% Similarity=0.013 Sum_probs=76.1
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCC-C
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHP-S 334 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~-~ 334 (449)
.+.|-|-+||.+ +-..++.....++..|.++-+.+-+ ....|+.... ++.+.+- ... .
T Consensus 265 ~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~s-------aHR~p~~~~~-----------~~~~~~~-~g~~~ 323 (425)
T 2h31_A 265 QCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTS-------AHKGPDETLR-----------IKAEYEG-DGIPT 323 (425)
T ss_dssp CCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECC-------TTTCHHHHHH-----------HHHHHHT-TCCCE
T ss_pred CCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeee-------ccCCHHHHHH-----------HHHHHHH-CCCCe
Confidence 456777888876 7788888888899999886555443 2344543221 1111000 112 3
Q ss_pred ccceeccCCch----hHHHHHhhCCcEeccccccchhhHHHH--HHh--hhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 335 VGCFVTHCGSG----SLSEAMVNECQLVLLPNVGDQIINARL--MGE--ELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 335 ~~~~I~HgG~g----s~~eal~~GvP~l~~P~~~DQ~~na~~--v~~--~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
+ +|.=+|.- ++. |-..-+|+|.+|....-...... +.+ . |+.+..-.. ..+..-++..|.. ++
T Consensus 324 v--iIa~AG~~a~Lpgvv-a~~t~~PVIgvP~~~~~~G~daLls~vqmp~-g~pvatv~~----~~nAa~~A~~Il~-~~ 394 (425)
T 2h31_A 324 V--FVAVAGRSNGLGPVM-SGNTAYPVISCPPLTPDWGVQDVWSSLRLPS-GLGCSTVLS----PEGSAQFAAQIFG-LS 394 (425)
T ss_dssp E--EEEECCSSCCHHHHH-HHHCSSCEEECCCCCTTTHHHHGGGTSSCCS-SCCCEECCC----HHHHHHHHHHHHH-TT
T ss_pred E--EEEEcCcccchHhHH-hccCCCCEEEeeCccccccHHHHHHHhcCCC-CCceEEecC----chHHHHHHHHHHc-cC
Confidence 4 77766653 333 33457999999985322222222 222 2 333211112 1567777777764 46
Q ss_pred CCCchhHHHHHHHHHHHHHHHH
Q 039043 407 DDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 407 ~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
+ +.++++.+..+....
T Consensus 395 ~------~~l~~kl~~~~~~~~ 410 (425)
T 2h31_A 395 N------HLVWSKLRASILNTW 410 (425)
T ss_dssp C------HHHHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHHH
Confidence 6 778877777776655
No 197
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=26.27 E-value=61 Score=24.36 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=45.2
Q ss_pred hhcCCCccceeccCCchh---------HHHHHhhCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHH
Q 039043 329 ILKHPSVGCFVTHCGSGS---------LSEAMVNECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCK 399 (449)
Q Consensus 329 lL~~~~~~~~I~HgG~gs---------~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~ 399 (449)
=++.+++ +|--.|..| +..|...|+|++++=.++.+. .-..+++. +.. +- . .+.+.|.+
T Consensus 35 ~I~~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~~~-a~~--iV-~-----Wn~~~I~~ 102 (111)
T 1eiw_A 35 TPEDADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELEAV-SSE--VV-G-----WNPHCIRD 102 (111)
T ss_dssp CSSSCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHHHH-CSE--EE-C-----SCHHHHHH
T ss_pred ccccCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHHhh-Cce--ec-c-----CCHHHHHH
Confidence 3456777 898899887 667889999999887766541 22224443 322 22 1 78899999
Q ss_pred HHHHHhc
Q 039043 400 AVKAVID 406 (449)
Q Consensus 400 ~i~~ll~ 406 (449)
+|+..++
T Consensus 103 aI~~~~~ 109 (111)
T 1eiw_A 103 ALEDALD 109 (111)
T ss_dssp HHHHHHC
T ss_pred HHHhccC
Confidence 9988754
No 198
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=26.24 E-value=37 Score=30.98 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
.+.|.+- .++|+++.++|++|||+..+..
T Consensus 62 ~SSGkmG--~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 62 FSSGRRG--ATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp CCCCHHH--HHHHHHHHHTTCEEEEEEETTS
T ss_pred CCCcHHH--HHHHHHHHHCCCEEEEEecCCC
Confidence 4445544 4689999999999999987653
No 199
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=25.92 E-value=1.9e+02 Score=24.86 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhC--CCEEEEEcCCcc----ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 11 TPFLHIANKLAER--GHRISFLLPAKA----ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 11 ~p~l~la~~L~~r--Gh~Vt~~~~~~~----~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.-+.++.+.|.+. +++|..+.+... .+.+++.| +.+..++- ..+. + .
T Consensus 34 ~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~g-----Ip~~~~~~---~~~~-------~------------r 86 (229)
T 3auf_A 34 TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAG-----VDALHMDP---AAYP-------S------------R 86 (229)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTT-----CEEEECCG---GGSS-------S------------H
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcC-----CCEEEECc---cccc-------c------------h
Confidence 3467788888876 678766655421 24455666 77766540 0000 0 0
Q ss_pred hhcHHHHHHHHhhcCCCEEEEc-C-CCChHHHHHHhCCceEEEecc
Q 039043 85 DLTEPAIESVLRHLKPDFVFFD-F-THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D-~-~~~~~~~A~~~giP~v~~~~~ 128 (449)
+...+.+.+.+++.+||+||+- + ......+-+.....++-+.++
T Consensus 87 ~~~~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 87 TAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred hhccHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 1123467788899999999874 4 455555556666667765443
No 200
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=25.78 E-value=14 Score=32.04 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=23.5
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecch
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~ 129 (449)
.||+|| .|. ...+..=|.++|||+|.++-+.
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDTn 190 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDTN 190 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCSS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecCC
Confidence 599876 576 5567777899999999885443
No 201
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=25.62 E-value=49 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=24.6
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++-+..
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~ 185 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDS 185 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTC
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCC
Confidence 699876 576 55677788999999999866543
No 202
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=25.40 E-value=1.2e+02 Score=28.32 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEcC
Q 039043 258 LIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALKP 294 (449)
Q Consensus 258 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 294 (449)
+++++.||.+ .-.-+..+..+|...|++|.+.++.
T Consensus 3 Ili~~~gt~G--hv~p~~~La~~L~~~Gh~V~v~~~~ 37 (404)
T 3h4t_A 3 VLITGCGSRG--DTEPLVALAARLRELGADARMCLPP 37 (404)
T ss_dssp EEEEEESSHH--HHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred EEEEeCCCCc--cHHHHHHHHHHHHHCCCeEEEEeCH
Confidence 7788888765 3344666888899999999988754
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=25.40 E-value=67 Score=30.76 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=28.0
Q ss_pred cCCCCCCHHHHHHHHHHHHh-CCCEEEEEcCCcccc
Q 039043 3 PWFAMGHLTPFLHIANKLAE-RGHRISFLLPAKAIT 37 (449)
Q Consensus 3 ~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~ 37 (449)
..|+.|-..=++.+|...+. .|..|.|++.+...+
T Consensus 207 G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 207 ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA 242 (444)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 45788888889999998886 488999998876543
No 204
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=25.26 E-value=41 Score=30.76 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=23.2
Q ss_pred HHHhhcCCCEEEEcC-CCChHHHHHHhCCceEEEec
Q 039043 93 SVLRHLKPDFVFFDF-THWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 93 ~ll~~~~pD~vI~D~-~~~~~~~A~~~giP~v~~~~ 127 (449)
+.|...+||+||... ......--++.|||++.+..
T Consensus 110 E~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 110 EACVAATPDVVFLPMKLKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEECC
T ss_pred HHHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEcC
Confidence 345556999999875 32233334577999998743
No 205
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=25.13 E-value=1.1e+02 Score=28.80 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCEEEEcC---CCChHHHHHHhCCce
Q 039043 88 EPAIESVLRHLKPDFVFFDF---THWLPPLARKFGIKS 122 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~---~~~~~~~A~~~giP~ 122 (449)
.+.+.++.++.++|.|++-. ...+..+|+.+|+|.
T Consensus 64 ~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 64 MDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp HHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred HHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 34566777888999998643 345567789999994
No 206
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=25.09 E-value=35 Score=31.44 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=21.4
Q ss_pred HhhcCCCEEEEcC-CC-ChHHHHHHhCCceEEEe
Q 039043 95 LRHLKPDFVFFDF-TH-WLPPLARKFGIKSVLYC 126 (449)
Q Consensus 95 l~~~~pD~vI~D~-~~-~~~~~A~~~giP~v~~~ 126 (449)
+...+||+||... .. ......+.+|||++.+.
T Consensus 92 Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 92 LITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp HHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred HhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 4446899999865 31 12234567899999874
No 207
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=25.09 E-value=51 Score=25.60 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEEEcCCccccccC
Q 039043 6 AMGHLTPFLHIANKLAERGHRISFLLPAKAITKFE 40 (449)
Q Consensus 6 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 40 (449)
+.......+.+|....+.||+|+++-.......+.
T Consensus 28 ~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l~ 62 (134)
T 3mc3_A 28 DLDRTYAPLFMASISASMEYETSVFFMIXGPXLLD 62 (134)
T ss_dssp GTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGGB
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHHh
Confidence 45567788889999999999999888777665544
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.07 E-value=95 Score=26.59 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 5 FAMGHLTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 5 ~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
++.|-..=++.++..+..+|.+|.++.+..
T Consensus 21 mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 478888889999999999999999886554
No 209
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.98 E-value=95 Score=24.00 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=35.7
Q ss_pred hCCcEeccccccchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHHhc
Q 039043 353 NECQLVLLPNVGDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAVID 406 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~ll~ 406 (449)
..+|+|++--..+.. ...++.+. |+--.+.+. ++.++|.++|+++++
T Consensus 86 ~~ipvI~lTa~~~~~-~~~~~~~~-Ga~~yl~KP-----~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEAKRE-QIIEAAQA-GVNGYIVKP-----FTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSCCHH-HHHHHHHT-TCCEEEESS-----CCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCHH-HHHHHHHC-CCCEEEECC-----CCHHHHHHHHHHHHh
Confidence 468888876555444 44555567 988888876 899999999999875
No 210
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=24.89 E-value=73 Score=26.50 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
..+.-.|++.|.++|.+|.|..++-
T Consensus 63 Q~~v~el~~~L~~~G~~V~faIHPV 87 (203)
T 2fsv_C 63 QHALREMADVLKKEGVEVSYAIHPV 87 (203)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4577889999999999999998876
No 211
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=24.79 E-value=68 Score=27.77 Aligned_cols=39 Identities=3% Similarity=0.050 Sum_probs=27.0
Q ss_pred cHHHHHHHHhhc--CCCEEEEcC---CCChHHHHHHhCCceEEE
Q 039043 87 TEPAIESVLRHL--KPDFVFFDF---THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 87 ~~~~~~~ll~~~--~pD~vI~D~---~~~~~~~A~~~giP~v~~ 125 (449)
+...+.+.+++. ++|+|++-. .+.+..+|+.+|+|++..
T Consensus 74 l~~~la~~i~~~~~~~D~Ivg~~~gGi~~a~~lA~~L~~p~~~v 117 (234)
T 3m3h_A 74 IAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYV 117 (234)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 334455555554 789998744 466788999999998753
No 212
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.77 E-value=74 Score=24.01 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHhhcCCCEEEEcC-CCC--hHHHHHH-------hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-THW--LPPLARK-------FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~~--~~~~A~~-------~giP~v~~~~~~ 129 (449)
...+.+++.+||+||.|. ... +..+++. -++|++.++...
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 37 EALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp HHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCC
Confidence 444556677999999997 432 2222222 467888765543
No 213
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=24.42 E-value=1.8e+02 Score=24.63 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhCCC--EEEEEcCCcc----ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHH
Q 039043 11 TPFLHIANKLAERGH--RISFLLPAKA----ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAM 84 (449)
Q Consensus 11 ~p~l~la~~L~~rGh--~Vt~~~~~~~----~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (449)
.-+.++.+.|.+.+| +|..+.+..- .+.+++.| +.+..++- ..+. + .
T Consensus 13 ~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~g-----Ip~~~~~~---~~~~-------~------------r 65 (216)
T 2ywr_A 13 SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHN-----VECKVIQR---KEFP-------S------------K 65 (216)
T ss_dssp HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHT-----CCEEECCG---GGSS-------S------------H
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcC-----CCEEEeCc---cccc-------c------------h
Confidence 347788888988888 7765554431 23355556 66655430 0000 0 1
Q ss_pred hhcHHHHHHHHhhcCCCEEEEc-C-CCChHHHHHHhCCceEEEecc
Q 039043 85 DLTEPAIESVLRHLKPDFVFFD-F-THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 85 ~~~~~~~~~ll~~~~pD~vI~D-~-~~~~~~~A~~~giP~v~~~~~ 128 (449)
+...+.+.+.+++.+||+||+- + ..-...+-+.....++-+.++
T Consensus 66 ~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 66 KEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred hhhhHHHHHHHHhcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 1123467788899999999875 4 444454545555566665443
No 214
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=24.36 E-value=75 Score=26.50 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
..+.-.|++.|.++|.+|.|..++-
T Consensus 62 Q~~v~el~~~L~~~G~~V~faIHPV 86 (207)
T 1djl_A 62 QYPIADLVKMLTEQGKKVRFGIHPV 86 (207)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred hHHHHHHHHHHHHCCCeEEEEeCcc
Confidence 4677889999999999999998876
No 215
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=24.36 E-value=94 Score=25.05 Aligned_cols=40 Identities=8% Similarity=-0.079 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH-----hCCceEEEecch
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK-----FGIKSVLYCIIS 129 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~-----~giP~v~~~~~~ 129 (449)
...+.+++.+||+||.|. .+ .+..+++. -++|++.++...
T Consensus 42 ~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 42 EALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 445566777999999998 43 34444433 368888776543
No 216
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=24.26 E-value=45 Score=24.39 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhcCcchH-HHHHHHHHHHhccC
Q 039043 414 KEIKENHAKWREFLRSERLENS-YLDGFVQKLHGLLN 449 (449)
Q Consensus 414 ~~~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 449 (449)
++-.+++.++++.+.+.+.... .+.+++..+++++|
T Consensus 63 ~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkgl~k 99 (99)
T 1j2m_A 63 ESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGLHK 99 (99)
T ss_dssp TTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTTCC
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 3445778888888987755544 68888888888765
No 217
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=24.20 E-value=55 Score=28.03 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCEE-EEcC--CCChHHHHHHhCCceEEEecch
Q 039043 99 KPDFV-FFDF--THWLPPLARKFGIKSVLYCIIS 129 (449)
Q Consensus 99 ~pD~v-I~D~--~~~~~~~A~~~giP~v~~~~~~ 129 (449)
.||+| |.|. ...+..=|.++|||+|.++-+.
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCc
Confidence 69865 5687 5667778899999999886544
No 218
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.03 E-value=1.6e+02 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=22.9
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEE
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVA 291 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 291 (449)
.++.|-+|+.- +..+.++|+.+|..+.++
T Consensus 4 ~I~iiD~g~~n------~~si~~al~~~G~~~~v~ 32 (211)
T 4gud_A 4 NVVIIDTGCAN------ISSVKFAIERLGYAVTIS 32 (211)
T ss_dssp CEEEECCCCTT------HHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCh------HHHHHHHHHHCCCEEEEE
Confidence 38888888764 577889999999987764
No 219
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.02 E-value=75 Score=17.93 Aligned_cols=28 Identities=7% Similarity=0.260 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 396 GVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 396 ~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
+|.++|.+++... ......+.++++.+.
T Consensus 4 QLE~kVEeLl~~n-----~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKN-----WNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-----HHHHHHHHHHHHHhh
Confidence 6788888888731 667777888877654
No 220
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=23.92 E-value=3.2e+02 Score=22.91 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhC--CCEEEEEcCCc----cccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHh
Q 039043 12 PFLHIANKLAER--GHRISFLLPAK----AITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMD 85 (449)
Q Consensus 12 p~l~la~~L~~r--Gh~Vt~~~~~~----~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (449)
-+.++.++|.+. +|+|..+.+.. ..+.+++.| +.+..++- ..+. ..+
T Consensus 16 ~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~g-----Ip~~~~~~---~~~~-------------------~~~ 68 (212)
T 3av3_A 16 NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAREN-----VPAFVFSP---KDYP-------------------SKA 68 (212)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTT-----CCEEECCG---GGSS-------------------SHH
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcC-----CCEEEeCc---cccc-------------------chh
Confidence 366778888877 68987666553 223455556 66655530 0000 011
Q ss_pred hcHHHHHHHHhhcCCCEEEEc-C-CCChHHHHHHhCCceEEEecc
Q 039043 86 LTEPAIESVLRHLKPDFVFFD-F-THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 86 ~~~~~~~~ll~~~~pD~vI~D-~-~~~~~~~A~~~giP~v~~~~~ 128 (449)
...+.+.+.+++.+||+||+- + ......+-+.....++-+.++
T Consensus 69 ~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 69 AFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred hhHHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 123467788899999999875 4 455555556666667765443
No 221
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=23.89 E-value=70 Score=27.88 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=27.2
Q ss_pred cHHHHHHHHhhc--CCCEEEEcC---CCChHHHHHHhCCceEEE
Q 039043 87 TEPAIESVLRHL--KPDFVFFDF---THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 87 ~~~~~~~ll~~~--~pD~vI~D~---~~~~~~~A~~~giP~v~~ 125 (449)
+.+.+.+.+++. ++|+|++-. ...+..+|+.+++|++..
T Consensus 86 l~~~la~~i~~~~~~~DvIvg~~~gGi~~A~~lA~~L~~p~~~v 129 (243)
T 3dez_A 86 IENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYI 129 (243)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEecCchHHHHHHHHHHcCCCEEEE
Confidence 334455555554 789998743 467788899999998754
No 222
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=23.58 E-value=1.1e+02 Score=28.13 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=24.9
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELSGLPFLVALK 293 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 293 (449)
.++++++|+.+. -..+..++.+|...|++|.+.++
T Consensus 6 ~il~~~~~~~Gh--v~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 6 HILFANVQGHGH--VYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp EEEEECCSSHHH--HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCCCcc--cccHHHHHHHHHhCCCEEEEEcC
Confidence 478888776542 34455678888888999888764
No 223
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=23.38 E-value=1.3e+02 Score=25.79 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=26.3
Q ss_pred HHHHHHHhhc--CCCEEEEcC-CCC-------hHHHHHHhCCceEEEe
Q 039043 89 PAIESVLRHL--KPDFVFFDF-THW-------LPPLARKFGIKSVLYC 126 (449)
Q Consensus 89 ~~~~~ll~~~--~pD~vI~D~-~~~-------~~~~A~~~giP~v~~~ 126 (449)
+.+.+++++. +||+|++|- -.. |..+.-.+|+|+|.+.
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVA 138 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVA 138 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEE
Confidence 4555666665 699999986 332 3456667899999763
No 224
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=23.33 E-value=3.3e+02 Score=22.88 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCccceeccCCchhHHHHHhhCC
Q 039043 276 ELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSVGCFVTHCGSGSLSEAMVNEC 355 (449)
Q Consensus 276 ~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~~~~I~HgG~gs~~eal~~Gv 355 (449)
++++.++..+..+++..+.. .-+|+.+....+..-+-+ |+++ .=..-|...+..|+.+|.
T Consensus 71 ~~~~~l~~~~~Dliv~a~y~-------~il~~~~l~~~~~~~iNi-----------HpSL--LP~yrG~~pi~~ai~~G~ 130 (216)
T 2ywr_A 71 RMALELKKKGVELVVLAGFM-------RILSHNFLKYFPNKVINI-----------HPSL--IPAFQGLHAQKQAVEFGV 130 (216)
T ss_dssp HHHHHHHHTTCCEEEESSCC-------SCCCHHHHTTSTTCEEEE-----------ESSC--TTTTCSTTHHHHHHHHTC
T ss_pred HHHHHHHhcCCCEEEEeCch-------hhCCHHHHhhccCCeEEE-----------cCCc--CcCCCCccHHHHHHHcCC
Confidence 47777888888888887653 456776665443333333 4444 334568999999999999
Q ss_pred cEeccccc--cchhhHHHHHHhhhcceeEeeecCCCCcccHHHHHHHHHHH
Q 039043 356 QLVLLPNV--GDQIINARLMGEELKVGVEVEKGDEDGLFTRDGVCKAVKAV 404 (449)
Q Consensus 356 P~l~~P~~--~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~~l~~~i~~l 404 (449)
....+-++ .+..+...-+.+. -+.+... -|.++|.+++.++
T Consensus 131 ~~tGvTvh~v~~~~D~G~Ii~q~---~~~i~~~-----dt~~~L~~rl~~~ 173 (216)
T 2ywr_A 131 KFSGCTVHIVDESVDAGPVIVQA---VVPVLPE-----DDENTLADRILKW 173 (216)
T ss_dssp SEEEEEEEECCSSSSCSCEEEEE---EEECCTT-----CCHHHHHHHHHHH
T ss_pred CeEEEEEEEEcccCCCCCEEEEE---EEEcCCC-----CCHHHHHHHHHHH
Confidence 98877754 2444444433322 2234443 4888898888764
No 225
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.33 E-value=49 Score=32.72 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
...+.+++++.+||++|+... ...+|+++|||++.+
T Consensus 445 ~~el~~~i~~~~pDl~ig~~~--~~~~a~k~gIP~~~~ 480 (533)
T 1mio_A 445 HHDMEVVLEKLKPDMFFAGIK--EKFVIQKGGVLSKQL 480 (533)
T ss_dssp HHHHHHHHHHHCCSEEEECHH--HHHHHHHTTCEEEET
T ss_pred HHHHHHHHHhcCCCEEEcccc--hhHHHHhcCCCEEEe
Confidence 346888899999999998752 367889999999853
No 226
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=23.28 E-value=3.7e+02 Score=24.44 Aligned_cols=149 Identities=11% Similarity=0.060 Sum_probs=70.9
Q ss_pred CCeEEEEEeCCcccCCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCC
Q 039043 255 SKSLIFCAFGSECVLNKEQFQE-LVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHP 333 (449)
Q Consensus 255 ~k~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~ 333 (449)
++++++++ |-.....-+.|.. ++.-.++.+.+-++.++.- ....|-. ++..+.. .....+++..-
T Consensus 104 ~~~~llL~-G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggi------p~~vpHt-----RP~~V~~--~at~~el~~~~ 169 (325)
T 3e35_A 104 GAPFLFLS-GPEPDVEWERFAAAVGQIVERLGVRLSVSFHGI------PMGVPHT-----RPVGITP--HGSRTDLVPGH 169 (325)
T ss_dssp CCEEEEEE-EECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEE------EESCCTT-----SCCCEEE--EESCGGGCC--
T ss_pred CCcEEEEE-CCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCc------cCCCCCC-----CCceeEE--EeCCHHHHHhh
Confidence 45566665 6666566554444 6676788999877776651 1111100 0001222 11223333321
Q ss_pred Ccccee---ccCCchh--HHHHHhhCCcEecc----ccccch---hhHHHH----HHhhhcceeE--eeecCCCCcccHH
Q 039043 334 SVGCFV---THCGSGS--LSEAMVNECQLVLL----PNVGDQ---IINARL----MGEELKVGVE--VEKGDEDGLFTRD 395 (449)
Q Consensus 334 ~~~~~I---~HgG~gs--~~eal~~GvP~l~~----P~~~DQ---~~na~~----v~~~~G~G~~--~~~~~~~~~~~~~ 395 (449)
.. .+- .-+|..+ ..+|...|.|.+++ |...-| |.=|.. +++++|+-+- +..-. -..+
T Consensus 170 ~~-~~~~~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPhYla~~p~P~AA~alL~~L~~~~gl~vp~~~~~L~----e~Ae 244 (325)
T 3e35_A 170 RS-PFEEAQVPGSAEALVEYRLAQAGHDVLGVAAHVPHYVARSAYPDAALTVLEAITAATGLVLPGIAHSLR----TDAH 244 (325)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHH
T ss_pred cc-ccccCCCcccHHHHHHHHHHHCCCCeEEEEEEcCccccCCCCHHHHHHHHHHHHHHhCCCCCcchHHHH----HHHH
Confidence 11 011 2233333 33778899999875 433233 333333 2333333333 22222 2446
Q ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHH
Q 039043 396 GVCKAVKAVIDD-DHSEVGKEIKENHAKWREFL 427 (449)
Q Consensus 396 ~l~~~i~~ll~~-~~~~~~~~~~~~a~~l~~~~ 427 (449)
++.+.|+++.++ . +++.+-++.|-+..
T Consensus 245 ~~e~~i~el~~~~~-----~E~~~~V~~LE~~y 272 (325)
T 3e35_A 245 RTQTEIDRQIQEGD-----EELIALVQGLEHQY 272 (325)
T ss_dssp HHHHHHHHHHHHSC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-----HHHHHHHHHHHHHH
Confidence 677777777763 2 55555555554443
No 227
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=23.10 E-value=41 Score=29.32 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=22.2
Q ss_pred HhhcCCCEEEEcC-C-CChHHHHHHhCCceEEEec
Q 039043 95 LRHLKPDFVFFDF-T-HWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 95 l~~~~pD~vI~D~-~-~~~~~~A~~~giP~v~~~~ 127 (449)
+...+||+||... . ......-++.|||++.+..
T Consensus 56 i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 4557999999865 3 1223445678999987643
No 228
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=23.05 E-value=37 Score=28.18 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhCCCEEEEEcCCccccccCCC
Q 039043 9 HLTPFLHIANKLAERGHRISFLLPAKAITKFEPS 42 (449)
Q Consensus 9 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 42 (449)
...-...+.+.|+++|++|.++.++....++...
T Consensus 14 aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~ 47 (181)
T 1g63_A 14 NVININHYIVELKQHFDEVNILFSPSSKNFINTD 47 (181)
T ss_dssp GGGGHHHHHHHHTTTSSCEEEEECGGGGGTSCGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHHH
Confidence 3346789999999999999999999988777653
No 229
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=22.92 E-value=54 Score=29.69 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHhhcCCCEEEEcC-CC-ChHHHHHHhCCceEEEec
Q 039043 94 VLRHLKPDFVFFDF-TH-WLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 94 ll~~~~pD~vI~D~-~~-~~~~~A~~~giP~v~~~~ 127 (449)
.+...+||+||... .. ....--++.|||++.+..
T Consensus 79 ~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 79 SLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECS
T ss_pred HHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEec
Confidence 34556999999875 32 223334577999998743
No 230
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.78 E-value=61 Score=28.92 Aligned_cols=81 Identities=10% Similarity=0.125 Sum_probs=51.9
Q ss_pred HHhCCCEEEEEcCCccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhhcHHHHHHHHhhcC
Q 039043 20 LAERGHRISFLLPAKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDLTEPAIESVLRHLK 99 (449)
Q Consensus 20 L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 99 (449)
|.....+..+.+++.|.-+.+..| ++...+- ++..+.+.+. .....+.+.+++.+
T Consensus 172 l~~~~~~~~v~~H~af~Yf~~~yG-----l~~~~~~-----~~~~~~eps~---------------~~l~~l~~~ik~~~ 226 (284)
T 3cx3_A 172 FEKATQKTFVTQHTAFSYLAKRFG-----LNQLGIA-----GISPEQEPSP---------------RQLTEIQEFVKTYK 226 (284)
T ss_dssp HHSCSCCCEEEEESCCHHHHHHTT-----CCEEEEE-----CSSTTCCCCS---------------HHHHHHHHHHHHTT
T ss_pred HhcCCCCEEEEECCchHHHHHHcC-----CEEeecc-----CCCCCCCCCH---------------HHHHHHHHHHHHcC
Confidence 433334455666788888888888 6665543 2211111111 13356778888889
Q ss_pred CCEEEEcC-CC--ChHHHHHHhCCceEEE
Q 039043 100 PDFVFFDF-TH--WLPPLARKFGIKSVLY 125 (449)
Q Consensus 100 pD~vI~D~-~~--~~~~~A~~~giP~v~~ 125 (449)
..+|+++. .. .+..+|+..|++++.+
T Consensus 227 v~~if~e~~~~~~~~~~ia~~~g~~v~~l 255 (284)
T 3cx3_A 227 VKTIFTESNASSKVAETLVKSTGVGLKTL 255 (284)
T ss_dssp CCCEEECSSSCCHHHHHHHSSSSCCEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHHcCCeEEEe
Confidence 99999998 43 3467899999998764
No 231
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.77 E-value=1.2e+02 Score=22.58 Aligned_cols=38 Identities=8% Similarity=-0.082 Sum_probs=25.5
Q ss_pred HHHHHHHhh-cCCCEEEEcC-CC--ChHHHHHHh-----CCceEEEe
Q 039043 89 PAIESVLRH-LKPDFVFFDF-TH--WLPPLARKF-----GIKSVLYC 126 (449)
Q Consensus 89 ~~~~~ll~~-~~pD~vI~D~-~~--~~~~~A~~~-----giP~v~~~ 126 (449)
....+.+++ .+||+||.|. .. .+..+.+.+ ++|++.++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 344556677 7899999998 43 455555554 57777765
No 232
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=22.72 E-value=71 Score=26.04 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCcc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKA 35 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~ 35 (449)
..+...|++.|.++|.+|.|+.++..
T Consensus 47 Q~~v~el~~~L~~~G~~V~faIHPVA 72 (186)
T 2bru_C 47 QYPVAEITEKLRARGINVRFGIHPVA 72 (186)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46788999999999999999988763
No 233
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.67 E-value=61 Score=29.11 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=24.5
Q ss_pred CCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 99 KPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 99 ~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
.||+|| .|. ...+..=|.++|||+|.++.+..
T Consensus 118 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~ 152 (295)
T 2zkq_b 118 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDS 152 (295)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTC
T ss_pred CCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCC
Confidence 699876 466 55677788999999999866543
No 234
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=22.57 E-value=92 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCChHHHHHHh-------CCceEEE
Q 039043 88 EPAIESVLRHLKPDFVFFDFTHWLPPLARKF-------GIKSVLY 125 (449)
Q Consensus 88 ~~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~-------giP~v~~ 125 (449)
...+.+++++.+||+||+.. .+..+|+++ |||++.+
T Consensus 427 ~~~l~~~i~~~~pDLlig~s--~~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 427 LWHLRSLVFTDKPDFMIGNS--YGKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHHHTCCSEEEECT--THHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHHHhcCCCEEEECc--cHHHHHHHhhcccccCCCceEEe
Confidence 34677888889999999986 234566767 9999864
No 235
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=22.44 E-value=54 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=24.8
Q ss_pred cCCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 98 LKPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 98 ~~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
..||+|| .|. ...+..=|.++|||+|.++.+..
T Consensus 116 ~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~ 151 (252)
T 3u5c_A 116 KEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDS 151 (252)
T ss_dssp CCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTC
T ss_pred cCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCC
Confidence 3799876 566 56667778899999998876543
No 236
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=22.42 E-value=2.9e+02 Score=21.79 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=25.3
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC-C-CCEEEE
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELS-G-LPFLVA 291 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~-~-~~~i~~ 291 (449)
..+|+|+.||-.....+.+..+...++.. + ..|.+.
T Consensus 25 ~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~a 62 (156)
T 1tjn_A 25 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIA 62 (156)
T ss_dssp EEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEE
T ss_pred cCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 56999999997645566788888888653 3 445454
No 237
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.37 E-value=63 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCc
Q 039043 13 FLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
-.++|++|.++|++|+++..+.
T Consensus 37 G~aiA~~~~~~Ga~V~l~~~~~ 58 (226)
T 1u7z_A 37 GFAIAAAAARRGANVTLVSGPV 58 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 3578999999999999986654
No 238
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.31 E-value=2.3e+02 Score=32.43 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHhCCCEEEEEcCCccccc
Q 039043 2 YPWFAMGHLTPFLHIANKLAERGHRISFLLPAKAITK 38 (449)
Q Consensus 2 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 38 (449)
+--|+.|-..=++.+|.+.+.+|..|.|++.+...+.
T Consensus 389 ~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 389 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 425 (1706)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH
Confidence 3457888889999999999999999999998876544
No 239
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=22.25 E-value=1.2e+02 Score=26.07 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=29.4
Q ss_pred hcccccccCCCCCeEEEEEeCCcccCCHHHHHHHHHHHHhCCCCEE
Q 039043 244 ERWETLLGSFKSKSLIFCAFGSECVLNKEQFQELVLGFELSGLPFL 289 (449)
Q Consensus 244 ~~l~~~l~~~~~k~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 289 (449)
+.+.+|+.. .+.+++|..|+........+..+.++++.+|..+.
T Consensus 22 ~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~ 65 (229)
T 1fy2_A 22 PLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVT 65 (229)
T ss_dssp HHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 336666653 35599999887533344566778889998887544
No 240
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=22.19 E-value=1.7e+02 Score=21.83 Aligned_cols=28 Identities=7% Similarity=-0.037 Sum_probs=18.0
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHH
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARK 117 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~ 117 (449)
...+.+++.+||+||.|. .+ .+..+++.
T Consensus 45 ~al~~l~~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 45 QALQAYQNRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHHHHSCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCcHHHHHHH
Confidence 334455667899999998 43 45544443
No 241
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.05 E-value=1.2e+02 Score=17.11 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
.+|.+++.+++... ......+.++++.+.
T Consensus 3 nQLEdKvEeLl~~~-----~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKX-----YHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHh-----hHHHHHHHHHHHHHc
Confidence 46888999998741 667777777777653
No 242
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=21.88 E-value=2.6e+02 Score=21.04 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=23.9
Q ss_pred CeEEEEEeCCcccCCHHHHHHHHHHHHhC-C-CCEEEE
Q 039043 256 KSLIFCAFGSECVLNKEQFQELVLGFELS-G-LPFLVA 291 (449)
Q Consensus 256 k~~v~vs~GS~~~~~~~~~~~~~~al~~~-~-~~~i~~ 291 (449)
+.+|+|+.||......+.+..+...++.. + ..+.+.
T Consensus 4 ~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a 41 (133)
T 2xws_A 4 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIA 41 (133)
T ss_dssp EEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEee
Confidence 45999999996544445677777777643 3 445555
No 243
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=21.72 E-value=1.7e+02 Score=21.81 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF 118 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~ 118 (449)
...+.+++.+||+||.|. .. .+..+++.+
T Consensus 46 ~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 46 DVLKFLQHNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHHCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 344566677899999997 43 455566654
No 244
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=21.69 E-value=48 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCEEEEEc
Q 039043 14 LHIANKLAERGHRISFLL 31 (449)
Q Consensus 14 l~la~~L~~rGh~Vt~~~ 31 (449)
+.+|..|+++|++|+++=
T Consensus 15 L~aA~~La~~G~~V~v~E 32 (336)
T 3kkj_A 15 LSAAQALTAAGHQVHLFD 32 (336)
T ss_dssp HHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 678999999999999984
No 245
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=21.65 E-value=60 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCc
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAK 34 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~ 34 (449)
+.|+++++++|.++|.+|+++ ...
T Consensus 35 ItPl~sm~~~l~~~~~~v~l~-g~r 58 (158)
T 3lrx_A 35 IVEVYPIAKAWQEIGNDVTTL-HVT 58 (158)
T ss_dssp HHHHHHHHHHHHHHTCEEEEE-EEC
T ss_pred HHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 789999999999999999998 543
No 246
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.60 E-value=39 Score=30.39 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=25.1
Q ss_pred cCCCEEE-EcC--CCChHHHHHHhCCceEEEecchH
Q 039043 98 LKPDFVF-FDF--THWLPPLARKFGIKSVLYCIISP 130 (449)
Q Consensus 98 ~~pD~vI-~D~--~~~~~~~A~~~giP~v~~~~~~~ 130 (449)
..||+|| .|. ...++.=|.++|||+|.++.+..
T Consensus 121 ~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTns 156 (305)
T 3iz6_A 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDS 156 (305)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTS
T ss_pred cCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCC
Confidence 4799876 466 56667778899999999876554
No 247
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=21.20 E-value=1.5e+02 Score=24.53 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-----CCceEEEecchH
Q 039043 90 AIESVLRHLKPDFVFFDF-TH--WLPPLARKF-----GIKSVLYCIISP 130 (449)
Q Consensus 90 ~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-----giP~v~~~~~~~ 130 (449)
.....+++.+||+||.|. .+ .+..+++.+ ++|++.++....
T Consensus 37 ~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 37 EGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 334556677899999998 43 344444432 688888766543
No 248
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.18 E-value=1.2e+02 Score=27.70 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred cccccCCCCCeEEEEEeCCccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccch
Q 039043 247 ETLLGSFKSKSLIFCAFGSECV-LNKEQFQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQ 325 (449)
Q Consensus 247 ~~~l~~~~~k~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~p 325 (449)
...|...+. +-.||..|... ..++.++..++.|+..|.+++..-..........+.-.+ +--+
T Consensus 6 P~~L~~GD~--I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~--------------Ra~d 69 (331)
T 4e5s_A 6 PTKLKKGDE--IRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISS--------------RVQD 69 (331)
T ss_dssp CCCCCTTCE--EEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHH--------------HHHH
T ss_pred CCCCCCcCE--EEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHH--------------HHHH
Q ss_pred hhhhhcCCCccceec-cCCchhH
Q 039043 326 QQLILKHPSVGCFVT-HCGSGSL 347 (449)
Q Consensus 326 q~~lL~~~~~~~~I~-HgG~gs~ 347 (449)
-++.+..+++++++| .||+|+.
T Consensus 70 L~~a~~Dp~i~aI~~~rGG~g~~ 92 (331)
T 4e5s_A 70 LHEAFRDPNVKAILTTLGGYNSN 92 (331)
T ss_dssp HHHHHHCTTEEEEEESCCCSCGG
T ss_pred HHHHhhCCCCCEEEEccccccHH
No 249
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=21.17 E-value=3.2e+02 Score=21.86 Aligned_cols=95 Identities=12% Similarity=0.059 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCcc------ccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHHHHHHHhh
Q 039043 13 FLHIANKLAERGHRISFLLPAKA------ITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPLLMTAMDL 86 (449)
Q Consensus 13 ~l~la~~L~~rGh~Vt~~~~~~~------~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (449)
...+.+.|+++|..+.++|.... ...++..|.... +..+... +.... .....+.....
T Consensus 39 ~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~-fd~i~~~----~~~~~----~~~~~KP~p~~------- 102 (189)
T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDY-FDFIYAS----NSELQ----PGKMEKPDKTI------- 102 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGG-EEEEEEC----CTTSS----TTCCCTTSHHH-------
T ss_pred HHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhh-eEEEEEc----ccccc----ccCCCCcCHHH-------
Confidence 45778899999999999996543 334555563332 4444333 11100 00000101111
Q ss_pred cHHHHHHHHhh--cCC-CE-EEEcCCCChHHHHHHhCCceEEEec
Q 039043 87 TEPAIESVLRH--LKP-DF-VFFDFTHWLPPLARKFGIKSVLYCI 127 (449)
Q Consensus 87 ~~~~~~~ll~~--~~p-D~-vI~D~~~~~~~~A~~~giP~v~~~~ 127 (449)
+..++++ ..| ++ +|.|....-..+|+..|+.+|.+..
T Consensus 103 ----~~~~~~~~~~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~ 143 (189)
T 3ib6_A 103 ----FDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQN 143 (189)
T ss_dssp ----HHHHHHHHTCCGGGEEEEESBTTTTHHHHHHTTCEEEEECC
T ss_pred ----HHHHHHHcCCCcccEEEECCCcHHHHHHHHHCCCeEEEECC
Confidence 1122222 233 34 4555446789999999999997744
No 250
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.09 E-value=4.2e+02 Score=23.13 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=27.3
Q ss_pred hCCcEeccccccchh-----hHHHHHHhhhcc-eeEeeec--------CCCCcccHHHHHHHHHHHh
Q 039043 353 NECQLVLLPNVGDQI-----INARLMGEELKV-GVEVEKG--------DEDGLFTRDGVCKAVKAVI 405 (449)
Q Consensus 353 ~GvP~l~~P~~~DQ~-----~na~~v~~~~G~-G~~~~~~--------~~~~~~~~~~l~~~i~~ll 405 (449)
+|+|+++.|-+.--. ..+.....+ |+ |+.++.. |..-.++++++.+.++++.
T Consensus 191 ~~~pVi~d~sH~~g~~~~v~~~~~aAva~-Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~ 256 (262)
T 1zco_A 191 SHLPIIVDPSHPAGRRSLVIPLAKAAYAI-GADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE 256 (262)
T ss_dssp BSSCEEECSSTTTCSGGGHHHHHHHHHHT-TCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred hCCCEEEEcCCCCCccchHHHHHHHHHHc-CCCEEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence 367766666543111 234444444 65 5556544 2223467777777776653
No 251
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=20.92 E-value=4.1e+02 Score=24.14 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=57.9
Q ss_pred eEEEEEeCCcccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCccccCCChhHHHhcCCCeEEEeccchhhhhhcCCCc
Q 039043 257 SLIFCAFGSECVLNKEQFQELVLGFELS-GLPFLVALKPPVGHDTIESALPEGFEERVKGRGFIHGGWVQQQLILKHPSV 335 (449)
Q Consensus 257 ~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~pq~~lL~~~~~ 335 (449)
.+..|.+|.+.. ..+.++... +..++.++.... +... .....++ ..|-+..++|..+++
T Consensus 7 ~vgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~~~----------~~~~-~a~~~g~--~~~~~~~~ll~~~~~ 66 (359)
T 3e18_A 7 QLVIVGYGGMGS-------YHVTLASAADNLEVHGVFDILA----------EKRE-AAAQKGL--KIYESYEAVLADEKV 66 (359)
T ss_dssp EEEEECCSHHHH-------HHHHHHHTSTTEEEEEEECSSH----------HHHH-HHHTTTC--CBCSCHHHHHHCTTC
T ss_pred cEEEECcCHHHH-------HHHHHHHhCCCcEEEEEEcCCH----------HHHH-HHHhcCC--ceeCCHHHHhcCCCC
Confidence 378888887762 234455544 445554543321 1111 0111122 234566788886665
Q ss_pred cceeccCCch----hHHHHHhhCCcEec-ccccc--ch-hhHHHHHHhhhcceeEeeec
Q 039043 336 GCFVTHCGSG----SLSEAMVNECQLVL-LPNVG--DQ-IINARLMGEELKVGVEVEKG 386 (449)
Q Consensus 336 ~~~I~HgG~g----s~~eal~~GvP~l~-~P~~~--DQ-~~na~~v~~~~G~G~~~~~~ 386 (449)
++++--.-.. .+.+|+.+|+++++ -|+.. ++ ......+++. |+-+.+...
T Consensus 67 D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~-g~~~~v~~~ 124 (359)
T 3e18_A 67 DAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV-NKHFMVHQN 124 (359)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH-TCCEEEECG
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh-CCeEEEEee
Confidence 5566444333 36688999999987 45432 23 3344455555 766555543
No 252
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=20.82 E-value=65 Score=31.76 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHhCCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKFGIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~giP~v~~ 125 (449)
..+.+++++.+||++|.+. ....+|+++|||++.+
T Consensus 339 ~el~~~i~~~~pDL~ig~~--~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 339 LEVEKAIEAAAPELILGTQ--MERNIAKKLGLPCAVI 373 (525)
T ss_dssp HHHHHHHHHHCCSEEEECH--HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhhcCCCEEEecc--hhHHHHHHcCCCEEEe
Confidence 3567788888999999875 3456789999999863
No 253
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=20.78 E-value=1.7e+02 Score=26.67 Aligned_cols=85 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEcC--------CccccccCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCCCCCcHHH
Q 039043 8 GHLTPFLHIANKLAERGHRISFLLP--------AKAITKFEPSNLHRNLITFIPVSVPRVDGLPPGAETTNDVPFPLHPL 79 (449)
Q Consensus 8 GH~~p~l~la~~L~~rGh~Vt~~~~--------~~~~~~~~~~g~~~~~i~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 79 (449)
|--+-...+.++|.++||+|..+.+ ....+.+.+.| +.+...+
T Consensus 29 G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~g-----Ipv~~~~------------------------ 79 (329)
T 2bw0_A 29 GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDG-----VPVFKYS------------------------ 79 (329)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHT-----CCEEECS------------------------
T ss_pred cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcC-----CCEEecC------------------------
Q ss_pred HHHHHhhcH-------HHHHHHHhhcCCCEEEEcC--CCChHHHHHHhCCceEEEecc
Q 039043 80 LMTAMDLTE-------PAIESVLRHLKPDFVFFDF--THWLPPLARKFGIKSVLYCII 128 (449)
Q Consensus 80 ~~~~~~~~~-------~~~~~ll~~~~pD~vI~D~--~~~~~~~A~~~giP~v~~~~~ 128 (449)
.. +++.+.+++.+||++|+-. ......+-+.....++-+.++
T Consensus 80 -------~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpS 130 (329)
T 2bw0_A 80 -------RWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPS 130 (329)
T ss_dssp -------CCEETTEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESS
T ss_pred -------cccccccccHHHHHHHHhcCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCC
No 254
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=20.76 E-value=1.6e+02 Score=25.29 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.6
Q ss_pred cHHHHHHHHhhc--CCCEEEEc-C--CCChHHHHHHhCCceEEE
Q 039043 87 TEPAIESVLRHL--KPDFVFFD-F--THWLPPLARKFGIKSVLY 125 (449)
Q Consensus 87 ~~~~~~~ll~~~--~pD~vI~D-~--~~~~~~~A~~~giP~v~~ 125 (449)
+...+.+.++.. ++|+||+= . ...+..+|+.+|+|++..
T Consensus 57 ~~~~la~~i~~~~~~~d~Ivgv~~gG~~~a~~lA~~L~~p~~~~ 100 (236)
T 1qb7_A 57 IRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100 (236)
T ss_dssp HHHHHHHHHHHCSSCCSEEEEETTGGGGTHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECcCcHHHHHHHHHHhCCCEEEE
Confidence 344555556665 78999864 3 678889999999998753
No 255
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.68 E-value=1e+02 Score=17.45 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 039043 395 DGVCKAVKAVIDDDHSEVGKEIKENHAKWREFLR 428 (449)
Q Consensus 395 ~~l~~~i~~ll~~~~~~~~~~~~~~a~~l~~~~~ 428 (449)
.+|.+++.++++.. ......+.++++.+.
T Consensus 4 ~QLEdKVEeLl~~n-----~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKL-----YHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh-----HHHHHHHHHHHHHHc
Confidence 46788888888731 567777777776653
No 256
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=20.67 E-value=78 Score=31.14 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCChHHHHHHh-------CCceEEE
Q 039043 89 PAIESVLRHLKPDFVFFDFTHWLPPLARKF-------GIKSVLY 125 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~~~~~~~~A~~~-------giP~v~~ 125 (449)
..+.+++++.+||++|++. .+..+|+++ |||++.+
T Consensus 424 ~~l~~~i~~~~pDLiig~~--~~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 424 WHFRSLMFTRQPDFMIGNS--YGKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp HHHHHHHHHHCCSEEEECG--GGHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHhhcCCCEEEECc--chHHHHHHhhcccccCCCCeEEe
Confidence 4567788888999999986 236678888 9999854
No 257
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=20.57 E-value=46 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEcCCccccccCC
Q 039043 10 LTPFLHIANKLAERGHRISFLLPAKAITKFEP 41 (449)
Q Consensus 10 ~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 41 (449)
..-...|++.|+++|++|.++.++.....+..
T Consensus 17 a~k~~~ll~~L~~~g~eV~vv~T~~A~~fi~~ 48 (209)
T 3zqu_A 17 AQYGLRLLDCLVQEEREVHFLISKAAQLVMAT 48 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 34488999999999999999999988877654
No 258
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=20.47 E-value=72 Score=27.60 Aligned_cols=33 Identities=18% Similarity=-0.028 Sum_probs=21.7
Q ss_pred HHhhcCCCEEEEcC-CCCh--HHHHHHhCCceEEEe
Q 039043 94 VLRHLKPDFVFFDF-THWL--PPLARKFGIKSVLYC 126 (449)
Q Consensus 94 ll~~~~pD~vI~D~-~~~~--~~~A~~~giP~v~~~ 126 (449)
.+...+||+||+.. .... ..--++.|||++.+.
T Consensus 54 ~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 54 GILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 34557999999865 3222 233356899998763
No 259
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=20.37 E-value=2.1e+02 Score=28.52 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCccccCCChhHHHhcCC--CeEEEeccch--------h--hhhhcCCCccceecc
Q 039043 274 FQELVLGFELSGLPFLVALKPPVGHDTIESALPEGFEERVKG--RGFIHGGWVQ--------Q--QLILKHPSVGCFVTH 341 (449)
Q Consensus 274 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~lp~~~~~~~~~--~~~~~~~~~p--------q--~~lL~~~~~~~~I~H 341 (449)
.+.+++.|+..|.+.++.+..... ..+...... +.+....-.. . ..+-..+.+ +++|
T Consensus 7 a~~lv~~L~~~GV~~vfg~PG~~~---------~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v--~~~t 75 (590)
T 1v5e_A 7 GLAVMKILESWGADTIYGIPSGTL---------SSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGV--TVGS 75 (590)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTT---------HHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCE--EEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCCch---------HHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEE--EEeC
Confidence 355777788888888887765422 111111111 1222211111 1 111123455 9999
Q ss_pred CC------chhHHHHHhhCCcEeccc
Q 039043 342 CG------SGSLSEAMVNECQLVLLP 361 (449)
Q Consensus 342 gG------~gs~~eal~~GvP~l~~P 361 (449)
.| .+.+.+|-+.++|+|++-
T Consensus 76 sGpG~~N~~~gl~~A~~~~vPll~It 101 (590)
T 1v5e_A 76 GGPGASHLINGLYDAAMDNIPVVAIL 101 (590)
T ss_dssp TTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred cChHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99 457889999999999974
No 260
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=20.25 E-value=34 Score=17.82 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCC
Q 039043 10 LTPFLHIANKLAERG 24 (449)
Q Consensus 10 ~~p~l~la~~L~~rG 24 (449)
+.|-+-+|++|++-|
T Consensus 2 m~PE~~iAqELRRIG 16 (26)
T 2wh6_B 2 MRPEIWIAQELRRIG 16 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 568888999998766
No 261
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.25 E-value=1.8e+02 Score=21.60 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHHHhh------cCCCEEEEcC-CC--ChHHHHHH-------hCCceEEEecch
Q 039043 89 PAIESVLRH------LKPDFVFFDF-TH--WLPPLARK-------FGIKSVLYCIIS 129 (449)
Q Consensus 89 ~~~~~ll~~------~~pD~vI~D~-~~--~~~~~A~~-------~giP~v~~~~~~ 129 (449)
....+.+++ .+||+||.|. .. .+..+++. -++|+|+++...
T Consensus 43 ~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 43 NQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp HHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred HHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 344455555 6899999997 43 44555544 357777776543
No 262
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=20.24 E-value=2.7e+02 Score=23.51 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=29.7
Q ss_pred EEEeccchhh-hhh-cCCCccceeccCCchhHHHHHh---------hCCcEecccc
Q 039043 318 FIHGGWVQQQ-LIL-KHPSVGCFVTHCGSGSLSEAMV---------NECQLVLLPN 362 (449)
Q Consensus 318 ~~~~~~~pq~-~lL-~~~~~~~~I~HgG~gs~~eal~---------~GvP~l~~P~ 362 (449)
..+...++.. .++ ..++ ..++--||.||+-|... +++|++.+-.
T Consensus 93 ~~~~~~f~~Rk~~~~~~sd-a~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 93 VRAVADMHQRKAEMAKHSD-AFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp EEEESSHHHHHHHHHHTCS-EEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred eeecCCHHHHHHHHHHhCC-EEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 4455666653 333 3444 35778899999988763 4899998864
No 263
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.10 E-value=1.3e+02 Score=22.47 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCCEEEEcC-CC--ChHHHHHHh-------CCceEEEec
Q 039043 89 PAIESVLRHLKPDFVFFDF-TH--WLPPLARKF-------GIKSVLYCI 127 (449)
Q Consensus 89 ~~~~~ll~~~~pD~vI~D~-~~--~~~~~A~~~-------giP~v~~~~ 127 (449)
....+.+++.+||+||.|. .. .+..+.+.+ .+|+|.++.
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 3455566777899999997 43 344444332 466666544
No 264
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=20.08 E-value=67 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCEEEEEcCC
Q 039043 4 WFAMGHLTPFLHIANKLAERGHRISFLLPA 33 (449)
Q Consensus 4 ~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 33 (449)
.|+.|-+-. .|+++|.++||+|+.++..
T Consensus 6 TGatGfIG~--~L~~~L~~~G~~V~~l~R~ 33 (298)
T 4b4o_A 6 GGGTGFIGT--ALTQLLNARGHEVTLVSRK 33 (298)
T ss_dssp ETTTSHHHH--HHHHHHHHTTCEEEEEESS
T ss_pred ECCCCHHHH--HHHHHHHHCCCEEEEEECC
Confidence 355665553 5789999999999998754
No 265
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.06 E-value=2e+02 Score=21.51 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=23.7
Q ss_pred HHHHHhh-cCCCEEEEcC-CC---ChHHHHHH----hCCceEEEecc
Q 039043 91 IESVLRH-LKPDFVFFDF-TH---WLPPLARK----FGIKSVLYCII 128 (449)
Q Consensus 91 ~~~ll~~-~~pD~vI~D~-~~---~~~~~A~~----~giP~v~~~~~ 128 (449)
..+.+++ .+||+||.|. .+ .+..+++. -++|+|+++..
T Consensus 41 a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 41 AVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred HHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 3344554 7899999998 53 34444433 47888776543
Done!