BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039044
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 123/190 (64%), Gaps = 9/190 (4%)
Query: 1 DSVSSLCFSPK---ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD 57
DS+ L FSP N L+A SW N VRCWE+ G ++PKA H PVL W D
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSD 96
Query: 58 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKY 115
DG+ VF+ CDK KMW L S Q + +A HDAP+K + WI P + + TGSWDKTLK+
Sbjct: 97 DGSKVFTASCDKTAKMWDL-SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 116 WDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT 175
WDTR NP+ QLP+RCY V YP+ VV TA+R L+V+ L+N +EF+RI SPLK+Q
Sbjct: 156 WDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH 215
Query: 176 RCVAAFPDQQ 185
RCVA F D+Q
Sbjct: 216 RCVAIFKDKQ 225
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Query: 118 T 118
+
Sbjct: 313 S 313
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 207
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 123 PVHT 126
+ T
Sbjct: 186 CLKT 189
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 82
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 122 NPVHT 126
+ T
Sbjct: 143 KCLKT 147
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+ S DKTLK WD + T + C + L+V G+ D ++ +++++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K +
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Query: 118 T 118
+
Sbjct: 313 S 313
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 207
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 123 PVHT 126
+ T
Sbjct: 186 CLKT 189
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 82
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 122 NPVHT 126
+ T
Sbjct: 143 KCLKT 147
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+ S DKTLK WD + T + C + L+V G+ D ++ +++++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K +
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312
Query: 118 T 118
+
Sbjct: 313 S 313
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 207
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 186
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 187 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 96
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 266
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 267 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Query: 118 T 118
+
Sbjct: 327 S 327
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 221
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGH 250
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 165
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 75
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 245
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 246 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Query: 118 T 118
+
Sbjct: 306 S 306
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 200
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGH 229
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 123 PVHT 126
+ T
Sbjct: 186 CLKT 189
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L A+S D ++ W G K H + W D
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 82
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 122 NPVHT 126
+ T
Sbjct: 143 KCLKT 147
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + + DK +K+W G T++ H I +VAW + NLL
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+ S DKTLK WD + T + C + L+V G+ D ++ +++++ +
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Query: 118 T 118
+
Sbjct: 313 S 313
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 207
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 169
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 249
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Query: 118 T 118
+
Sbjct: 310 S 310
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 204
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGH 233
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+ S+CFSP L + D +R W+I + H+ + + G +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIEN-----RKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR-- 119
SG D+ V++W L +G +T+++ D + VA P + +A GS D+ ++ WD+
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 120 -------QPNPVHTQQLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSP 170
N T D Y++ T +V G+ DR++ ++NLQN + +S
Sbjct: 240 FLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN---KSDSK 295
Query: 171 LKYQTRCVAAFPDQQGFLVCI 191
C + + F++ +
Sbjct: 296 TPNSGTCEVTYIGHKDFVLSV 316
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGG--TGVASVPKASISHDHPVLCSTWKD 57
D V+++ SP + A S D VR W+ G + S ++ H V +
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 58 DGTTVFSGGCDKQVKMWPLL------------SGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
DG +V SG D+ VK+W L SG VT H + VA +
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 106 TGSWDKTLKYWDTRQPNPV 124
+GS D+ + +WD + NP+
Sbjct: 327 SGSKDRGVLFWDKKSGNPL 345
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 13/136 (9%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS-------ISHDHPVLCS 53
DSV S+ F+ +V+ S D V+ W + S S I H VL
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 54 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI------PEMNLLATG 107
+ + SG D+ V W SG + + H + VA PE N+ ATG
Sbjct: 317 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376
Query: 108 SWDKTLKYWDTRQPNP 123
S D + W ++ P
Sbjct: 377 SGDCKARIWKYKKIAP 392
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 174
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 175 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 84
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 254
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 255 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Query: 118 T 118
+
Sbjct: 315 S 315
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 209
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGH 238
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Query: 118 T 118
+
Sbjct: 316 S 316
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 210
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGH 239
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 169
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 249
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Query: 118 T 118
+
Sbjct: 310 S 310
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 204
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGH 233
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 85
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Query: 118 T 118
+
Sbjct: 316 S 316
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 210
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGH 239
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 170
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 171 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 80
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 250
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 251 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Query: 118 T 118
+
Sbjct: 311 S 311
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 205
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGH 234
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 168
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 169 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 78
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 138
Query: 122 NPVHT 126
+ T
Sbjct: 139 KCLKT 143
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 248
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Query: 118 T 118
+
Sbjct: 309 S 309
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 203
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGH 232
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 175
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSNL 85
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 255
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 256 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Query: 118 T 118
+
Sbjct: 316 S 316
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 210
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGH 239
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 191
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 192 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 271
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Query: 118 T 118
+
Sbjct: 332 S 332
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 226
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 227 KYILAATLDNTLKLWDYSKGKCLKTYTGH 255
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDV-KTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 193
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D TLK WD + + T
Sbjct: 194 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 103
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 273
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 274 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Query: 118 T 118
+
Sbjct: 334 S 334
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 228
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 229 KYILAATLDNTLKLWDYSKGKCLKTYTGH 257
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67
F+P++N++V+ S+D VR W++ + G + ++P +H PV + DG+ + S
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDV-KTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSY 172
Query: 68 DKQVKMWPLLSGGQPVTVAMHDA-PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
D ++W SG T+ D P+ V + P + + D LK WD + + T
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Query: 127 QQ-LPDRCYALTVRYPL-----MVVGTADRNLVVFNLQNPQ 161
+ Y + + + +V G+ D + ++NLQ +
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+S + +S +N+LV+ S D ++ W++S G K H + V C + +
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----KCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
SG D+ V++W + +G T+ H P+ V + + +L+ + S+D + WDT
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ FSP L ++S D ++ W G K H + W D
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
+ S DK +K+W + SG T+ H + + P+ NL+ +GS+D++++ WD +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + +G + S DK +K+W G T++ H I +VAW + NLL
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLVVFNLQ 158
+ S DKTLK WD + T + C + L+V G+ D ++ +++++
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLC---STWKDDG 59
VS + FSP ++A + DN ++ W+ S+G K H + C + G
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKG-----KCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW--DKTLKYWD 117
+ SG D V +W L + + H + A P N++A+ + DKT+K W
Sbjct: 253 KWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Query: 118 T 118
+
Sbjct: 313 S 313
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVLCSTWKDDG 59
D VS++ F+ +++V++S+D R W+ + G K I D+ PV + +G
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNG 207
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ + D +K+W G T H
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGH 236
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 6/161 (3%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72
+++++ S D + W+++R T +A H H V DG SG D ++
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 73 MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR 132
+W L +G H + VA+ + + +GS DKT+K W+T Q
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 133 CYALTVRY------PLMVVGTADRNLVVFNLQNPQTEFKRI 167
+ VR+ P++V D+ + V+NL N + + I
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT- 61
V S+ FS +V+ S D ++ W GV SH V C + + +
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNT----LGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 62 -VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
+ S G DK VK+W L + H + V P+ +L A+G D WD +
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Query: 121 PNPVHTQQLPDRCYAL 136
++T D AL
Sbjct: 247 GKHLYTLDGGDIINAL 262
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHD---HPVLCST--W 55
D +++LCFSP L A + ++ W++ G V + + IS P C++ W
Sbjct: 257 DIINALCFSPNRYWLCAAT-GPSIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAW 314
Query: 56 KDDGTTVFSGGCDKQVKMWPLLSG 79
DG T+F+G D V++W + G
Sbjct: 315 SADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 6/161 (3%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72
+++++ S D + W+++R T +A H H V DG SG D ++
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 73 MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR 132
+W L +G H + VA+ + + +GS DKT+K W+T Q
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 133 CYALTVRY------PLMVVGTADRNLVVFNLQNPQTEFKRI 167
+ VR+ P++V D+ + V+NL N + + I
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 6/136 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT- 61
V S+ FS +V+ S D ++ W GV SH V C + + +
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNT----LGVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 62 -VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
+ S G DK VK+W L + H + V P+ +L A+G D WD +
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Query: 121 PNPVHTQQLPDRCYAL 136
++T D AL
Sbjct: 224 GKHLYTLDGGDIINAL 239
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHD---HPVLCST--W 55
D +++LCFSP L A + ++ W++ G V + + IS P C++ W
Sbjct: 234 DIINALCFSPNRYWLCAAT-GPSIKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAW 291
Query: 56 KDDGTTVFSGGCDKQVKMWPLLSG 79
DG T+F+G D V++W + G
Sbjct: 292 SADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
VS L S + +++SWD +R W++ G T K + H V + D +
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTT-----YKRFVGHQSEVYSVAFSPDNRQI 133
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEMN----------LLATGSWD 110
S G ++++K+W +L + + H + V + P M A+ WD
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 111 KTLKYWDT----RQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLV---VFNLQNPQTE 163
LK W+T R H + + +Y + G D+ L+ + NL PQ E
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKY--IATGGKDKKLLIWDILNLTYPQRE 251
Query: 164 F 164
F
Sbjct: 252 F 252
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 8 FSPKAN----ILVATSWDNQVRCWEI-SRGGTGVASVP-KASISHDHPVLCSTWKDDGTT 61
FS K N +L++ S D V W++ G +P KA H+H V +
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
S DK +++W L +G H + + VA+ P+ + + ++ +K W+
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 57 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-------HDAPIKEVAWIPEMNLLATGSW 109
+D + SG DK V +W L Q + H+ + ++A E + SW
Sbjct: 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96
Query: 110 DKTLKYWDTR 119
DKTL+ WD R
Sbjct: 97 DKTLRLWDLR 106
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK 69
P A + WD +++ W + + +H+ V + +G + +GG DK
Sbjct: 182 PFAPYFASVGWDGRLKVWNTN------FQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 70 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD--TRQPNPVHT 126
++ +W +L+ P + I ++A+ P++ +A G+ D+ +K ++ T+ PV T
Sbjct: 236 KLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCT 293
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLL 104
H V W+ DG + SGG D V++W S T H+A +K VAW P + NLL
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 105 AT--GSWDKTLKYWDTRQPNPVHT 126
AT G+ DK + +W+ V+T
Sbjct: 276 ATGGGTMDKQIHFWNAATGARVNT 299
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 3 VSSLCFSPKANILVATSW--DNQVRCWEISRGG-TGVASVPKASISHDHPVLCSTWKDDG 59
V+SL +SP + +++T DN + W S G T +P +HD VL S DG
Sbjct: 306 VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP----AHDTRVLYSALSPDG 361
Query: 60 TTVFSGGCDKQVKMWPLLSG 79
+ + D+ +K W + G
Sbjct: 362 RILSTAASDENLKFWRVYDG 381
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 2 SVSSLCFSPKANILVAT---SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD 58
+V ++ + P + L+AT + D Q+ W + G V +V S V W
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVDAGS-----QVTSLIWSPH 314
Query: 59 GTTVFS--GGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 114
+ S G D + +W S G + V + HD + A P+ +L+T + D+ LK
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374
Query: 115 YW 116
+W
Sbjct: 375 FW 376
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 127
++ Q T+ H + + +AW + LA+G D ++ WD R P T+
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW--KDDGT 60
+S+ F+ ++ S D W++ G + ++ H VLC + G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESG-----QLLQSFHGHGADVLCLDLAPSETGN 211
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T SGGCDK+ +W + SG H++ + V + P + A+GS D T + +D R
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Query: 121 PNPV 124
V
Sbjct: 272 DREV 275
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+S+ + P + + S D R +++ R VA K SI + + G +
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSV--DFSLSGRLL 299
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
F+G D + +W +L G + + H+ + + P+ +GSWD TL+ W
Sbjct: 300 FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 11/123 (8%)
Query: 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQPVTVAMHDAPIKEVAWIPEMNL 103
V+ + G + GG D + ++PL + +VAMH + ++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 104 LATGSWDKTLKYWDTRQP---NPVHTQQLPDRCYAL--TVRYPLMVVGTADRNLVVFNLQ 158
+ T S D T WD H C L + V G D+ +V++++
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 159 NPQ 161
+ Q
Sbjct: 229 SGQ 231
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H + VLC W D + S D +V +W + + V M + A+ P +A
Sbjct: 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIA 122
Query: 106 TGSWD 110
G D
Sbjct: 123 CGGLD 127
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.1 bits (118), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQV 71
A+I+V+ S D + W++++ + H H V DG SG D ++
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 72 KMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD 131
++W L +G H + VA+ + + + S D+T+K W+T + +
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 132 --RCYALTVRY------PLMVVGTADRNLVVFNLQN 159
R + VR+ P +V + D+ + V+NL N
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V + S ++ SWD ++R W+++ GV++ + + H VL + D +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLA---AGVST--RRFVGHTKDVLSVAFSLDNRQI 487
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAM----HDAPIKEVAWIPE--MNLLATGSWDKTLKYW 116
S D+ +K+W L G T++ H + V + P + + SWDKT+K W
Sbjct: 488 VSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
Query: 117 D 117
+
Sbjct: 547 N 547
Score = 41.6 bits (96), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 20/144 (13%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWE--------ISRGGTGVASVPKASISHDHPVLCST 54
V S+ FS +V+ S D ++ W IS GG G H V C
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG----------HRDWVSCVR 524
Query: 55 WKDDG--TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 112
+ + T+ S DK VK+W L + T+A H + VA P+ +L A+G D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 113 LKYWDTRQPNPVHTQQLPDRCYAL 136
+ WD + +++ + +AL
Sbjct: 585 VLLWDLAEGKKLYSLEANSVIHAL 608
Score = 31.2 bits (69), Expect = 0.42, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEIS------------RGGTGVASVPKASISHDHPV 50
+ +LCFSP L A + ++ ++ W++ + A + + +
Sbjct: 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663
Query: 51 LCST--WKDDGTTVFSGGCDKQVKMW 74
C++ W DG+T+FSG D +++W
Sbjct: 664 YCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVWGVAFSPDGQT 71
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 72 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V ++ DG T
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVNGVAFRPDGQT 276
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W+
Sbjct: 277 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--- 331
Query: 121 PNPVHTQQLPDRCYAL 136
N H Q L ++
Sbjct: 332 RNGQHLQTLTGHSSSV 347
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTVKLWN--RNGQHLQTL----TGHSSSVWGVAFSPDGQT 358
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 359 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVWGVAFSPDGQT 194
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 195 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVRGVAFSPDGQT 522
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W+
Sbjct: 523 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVRGVAFSPDGQT 481
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 482 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVRGVAFSPDGQT 235
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W+
Sbjct: 236 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + D T
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVWGVAFSPDDQT 440
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + ++ VA+ P+ +A+ S DKT+K W+
Sbjct: 441 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
SV + FSP + + S D V+ W R G + ++ H V + DG T
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTL----TGHSSSVRGVAFSPDGQT 112
Query: 62 VFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ S DK VK+W GQ + T+ H + + VA+ P+ +A+ S DKT+K W+
Sbjct: 113 IASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNL 103
+H V + DG T+ S DK VK+W GQ + T+ H + + VA+ P+
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 104 LATGSWDKTLKYWD 117
+A+ S DKT+K W+
Sbjct: 72 IASASDDKTVKLWN 85
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASI--SHDHPVLCSTWKDDG 59
++ S+ + P ++L A S+D+ V W + +I H++ V W +DG
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 115
+ + DK V +W G+ + H +K V W P LLA+ S+D T++
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 116 W 116
W
Sbjct: 180 W 180
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 88 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
H I+ VAW P +LLA GS+D T+ W +
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEES 90
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP-------VTVAMHDAPIKEVAW 97
+H + W+ + + +G D V +W + H+ +K VAW
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 98 IPEMNLLATGSWDKTLKYWDTRQPNP 123
+ LAT S DK++ W+T +
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGE 141
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
S C N +V +S D W+I H V+ + D S
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G CD K+W + G T H++ I + + P N ATGS D T + +D R +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 125 HT 126
T
Sbjct: 262 MT 263
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS----TWKDD 58
++++CF P N S D R +++ A + SHD+ ++C ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR------ADQELMTYSHDN-IICGITSVSFSKS 281
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
G + +G D +W L + +A HD + + + +ATGSWD LK W+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 141
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 142 ---LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT---RCVAAFPDQQ 185
+ G D ++NL+ + R++ L T C D Q
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
S C N +V +S D W+I H V+ + D S
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G CD K+W + G T H++ I + + P N ATGS D T + +D R +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 125 HT 126
T
Sbjct: 262 MT 263
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS----TWKDD 58
++++CF P N S D R +++ A + SHD+ ++C ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR------ADQELMTYSHDN-IICGITSVSFSKS 281
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
G + +G D +W L + +A HD + + + +ATGSWD LK W+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 141
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 142 ---LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT---RCVAAFPDQQ 185
+ G D ++NL+ + R++ L T C D Q
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
S C N +V +S D W+I H V+ + D S
Sbjct: 158 SCCRFLDDNQIVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 212
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G CD K+W + G T H++ I + + P N ATGS D T + +D R +
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 272
Query: 125 HT 126
T
Sbjct: 273 MT 274
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS----TWKDD 58
++++CF P N S D R +++ A + SHD+ ++C ++
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDLR------ADQELMTYSHDN-IICGITSVSFSKS 292
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
G + +G D +W L + +A HD + + + +ATGSWD LK W+
Sbjct: 293 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 141
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 118
Query: 142 ---LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT---RCVAAFPDQQ 185
+ G D ++NL+ + R++ L T C D Q
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFLDDNQ 167
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
S C N +V +S D W+I H V+ + D S
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G CD K+W + G T H++ I + + P N ATGS D T + +D R +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 125 HT 126
T
Sbjct: 262 MT 263
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS----TWKDD 58
++++CF P N S D R +++ A + SHD+ ++C ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR------ADQELMTYSHDN-IICGITSVSFSKS 281
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
G + +G D +W L + +A HD + + + +ATGSWD LK W+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 141
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 142 ---LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT---RCVAAFPDQQ 185
+ G D ++NL+ + R++ L T C D Q
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
S C N +V +S D W+I H V+ + D S
Sbjct: 147 SCCRFLDDNQIVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G CD K+W + G T H++ I + + P N ATGS D T + +D R +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 125 HT 126
T
Sbjct: 262 MT 263
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS----TWKDD 58
++++CF P N S D R +++ A + SHD+ ++C ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR------ADQELMTYSHDN-IICGITSVSFSKS 281
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
G + +G D +W L + +A HD + + + +ATGSWD LK W+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRYP- 141
T+ H A I + W + LL + S D L WD+ N VH +P R + +T Y
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAP 107
Query: 142 ---LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQT---RCVAAFPDQQ 185
+ G D ++NL+ + R++ L T C D Q
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNV-RVSRELAGHTGYLSCCRFLDDNQ 156
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D + S+ P +++ S D V+ W ++ + H+H V+C +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDP 153
Query: 61 TVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLATGSWDKTLKYW 116
+ F+ GC D+ VK+W L T+ + + V + +P+ + T S D T+K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 117 DTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKY 173
D + + V T + + V + P+++ G+ D L ++N + E K +N L+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLE- 271
Query: 174 QTRCVAAFP 182
++ C+A P
Sbjct: 272 RSWCIATHP 280
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDG 59
D V + F P ++ T + +V W V SI + PV +
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYE------TQVEVRSIQVTETPVRAGKFIARK 67
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D+V CFS + + D ++ ++ + G + + +H+ VLC + D +
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQVFK-AETGEKLLDIK----AHEDEVLCCAFSSDDS 670
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDT 118
+ + DK+VK+W +G T H + + + N LLATGS D LK WD
Sbjct: 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 119 RQPNPVHT 126
Q +T
Sbjct: 731 NQKECRNT 738
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + + DG + S G DK ++++ +G + + + H+ + A+ + + +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 106 TGSWDKTLKYWDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160
T S DK +K WD+ VHT +Q+ + + L+ G+ D L +++L
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 161 Q---TEFKRINS 169
+ T F NS
Sbjct: 734 ECRNTMFGHTNS 745
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDD 58
D V FS + + S D +V+ W+ + G + H V C T K +
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATG-----KLVHTYDEHSEQVNCCHFTNKSN 712
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
+ +G D +K+W L T+ H + + P+ LLA+ S D TL+ WD
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 119 RQPNP 123
R N
Sbjct: 773 RSANE 777
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG-----TGVASVPKASISHDHPVLCSTWK 56
+V + F+ L+++S D+ ++ W G +V + D +L +W
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL--SWS 1062
Query: 57 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
DGT VK+W +++G H + A + ++ S DKT K W
Sbjct: 1063 FDGT----------VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 117 DTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+P+H + + RC A ++ L+ G + + ++N+ + Q
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
VS C SP + D ++ E+ V + + H V + DG T+
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNN-----RVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
S D +++W + G V + H +K+ + + LL + S+D T+K W+
Sbjct: 1019 ISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN 1071
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D+V CFS + + D ++ ++ + G + + +H+ VLC + D +
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQVFK-AETGEKLLDIK----AHEDEVLCCAFSSDDS 677
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDT 118
+ + DK+VK+W +G T H + + + N LLATGS D LK WD
Sbjct: 678 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 119 RQPNPVHT 126
Q +T
Sbjct: 738 NQKECRNT 745
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + + DG + S G DK ++++ +G + + + H+ + A+ + + +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 106 TGSWDKTLKYWDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160
T S DK +K WD+ VHT +Q+ + + L+ G+ D L +++L
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 161 Q---TEFKRINS 169
+ T F NS
Sbjct: 741 ECRNTMFGHTNS 752
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDD 58
D V FS + + S D +V+ W+ + G + H V C T K +
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIWDSATG-----KLVHTYDEHSEQVNCCHFTNKSN 719
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
+ +G D +K+W L T+ H + + P+ LLA+ S D TL+ WD
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 119 RQPNP 123
R N
Sbjct: 780 RSANE 784
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG-----TGVASVPKASISHDHPVLCSTWK 56
+V + F+ L+++S D+ ++ W G +V + D +L +W
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL--SWS 1069
Query: 57 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
DGT VK+W +++G H + A + ++ S DKT K W
Sbjct: 1070 FDGT----------VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 117 DTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+P+H + + RC A ++ L+ G + + ++N+ + Q
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1167
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
VS C SP + D ++ E+ V + + H V + DG T+
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNN-----RVFSSGVGHKKAVRHIQFTADGKTL 1025
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
S D +++W + G V + H +K+ + + LL + S+D T+K W+
Sbjct: 1026 ISSSEDSVIQVWNWQT-GDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN 1078
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D + S+ P +++ S D V+ W ++ + H+H V+C +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WALEQTFEGHEHFVMCVAFNPKDP 153
Query: 61 TVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLATGSWDKTLKYW 116
+ F+ GC D+ VK+W L T+ + + V + +P+ + T S D T+K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 117 DTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKY 173
D + + V T + + V + P+++ G+ D L ++N + E K +N L+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLE- 271
Query: 174 QTRCVAAFP 182
++ C+A P
Sbjct: 272 RSWCIATHP 280
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDG 59
D V + F P ++ T + +V W V SI + PV +
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYE------TQVEVRSIQVTETPVRAGKFIARK 67
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D + S+ P +++ S D V+ W ++ + H+H V+C +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WALEQTFEGHEHFVMCVAFNPKDP 153
Query: 61 TVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLATGSWDKTLKYW 116
+ F+ GC D+ VK+W L T+ + + V + +P+ + T S D T+K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 117 DTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKY 173
D + + V T + + V + P+++ G+ D L ++N + E K +N L+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLE- 271
Query: 174 QTRCVAAFP 182
++ C+A P
Sbjct: 272 RSWCIATHP 280
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDG 59
D V + F P ++ T + +V W V SI + PV +
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYE------TQVEVRSIQVTETPVRAGKFIARK 67
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D + S+ P +++ S D V+ W ++ + H+H V+C +
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WALEQTFEGHEHFVMCVAFNPKDP 153
Query: 61 TVFSGGC-DKQVKMWPLLSGGQPVTVAM-HDAPIKEVAW--IPEMNLLATGSWDKTLKYW 116
+ F+ GC D+ VK+W L T+ + + V + +P+ + T S D T+K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 117 DTRQPNPVHTQQLPDRCYALTVRY---PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKY 173
D + + V T + + V + P+++ G+ D L ++N + E K +N L+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLE- 271
Query: 174 QTRCVAAFP 182
++ C+A P
Sbjct: 272 RSWCIATHP 280
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDG 59
D V + F P ++ T + +V W V SI + PV +
Sbjct: 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYE------TQVEVRSIQVTETPVRAGKFIARK 67
Query: 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
+ G D +++++ +G + V H I+ +A P + +GS D T+K W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
VS + S N V+ SWD+ +R W + G + H VL + D +
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNG-----QCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 63 FSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWD 117
SGG D +++W + ++ H + V + P ++ ++ +G WD +K WD
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 27/170 (15%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEI--------SRGG-TGVASVPKASISHDHPVLCS 53
V S+ FSP +V+ DN +R W + SRG T S + S S D PV
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV--- 168
Query: 54 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 113
+ SGG D VK+W L +G + H + V P+ +L A+ D
Sbjct: 169 --------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 114 KYWDTRQPNPVHTQQ----LPDRCYALTVRYPLMVVGTADRNLVVFNLQN 159
+ WD + + + C++ RY + ++ + +F+L+N
Sbjct: 221 RLWDLTKGEALSEMAAGAPINQICFSPN-RY--WMCAATEKGIRIFDLEN 267
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCST--WKDDGT 60
++ +CFSP + A + + +R +++ V P+ S C + W DG+
Sbjct: 240 INQICFSPNRYWMCAAT-EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGS 298
Query: 61 TVFSGGCDKQVKMW 74
T++SG D +++W
Sbjct: 299 TLYSGYTDNVIRVW 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D+V CFS + + D ++ ++ + G + + +H+ VLC + D
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQVFK-AETGEKLLEIK----AHEDEVLCCAFSTDDR 676
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDT 118
+ + DK+VK+W ++G T H + + + LLATGS D LK WD
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 119 RQPNPVHT 126
Q +T
Sbjct: 737 NQKECRNT 744
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H V + + +DG + S G DK ++++ +G + + + H+ + A+ + +A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 106 TGSWDKTLKYWDTRQPNPVHT-----QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160
T S DK +K W++ VHT +Q+ + + + L+ G++D L +++L
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 161 Q---TEFKRINS 169
+ T F NS
Sbjct: 740 ECRNTMFGHTNS 751
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
D V FS + S D +V+ W S G V + + H V C + +
Sbjct: 664 DEVLCCAFSTDDRFIATCSVDKKVKIWN-SMTGELVHTYDE----HSEQVNCCHFTNSSH 718
Query: 61 TVF--SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
+ +G D +K+W L T+ H + + P+ LLA+ S D TLK WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 119 RQPNP 123
N
Sbjct: 779 TSANE 783
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 24/164 (14%)
Query: 8 FSPKANILVATSWDNQVRCWE-------ISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
F+ L+++S D +++ W RG +V + + +L +W DGT
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQ--ETVKDFRLLKNSRLL--SWSFDGT 1072
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
VK+W +++G + H + + ++ S DKT K W
Sbjct: 1073 ----------VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Query: 121 PNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
P+H + + RC A +V L+ G + + ++N+ N +
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1166
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ 70
K + L++ S+D V+ W I G K + H VL D T S DK
Sbjct: 1060 KNSRLLSWSFDGTVKVWNIITGNK-----EKDFVCHQGTVLSCDISHDATKFSSTSADKT 1114
Query: 71 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 125
K+W + H+ ++ A+ + LLATG + ++ W+ +H
Sbjct: 1115 AKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 35 GVASVPKASISHD-HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK 93
G PK HD H + C + G + SG D +K+W ++G T+ H +
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV- 162
Query: 94 EVAWIPEM--NLLATGSWDKTLKYWDTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTA 148
W +M N++ +GS D+TLK W+ +HT RC L + +V G+
Sbjct: 163 ---WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSR 217
Query: 149 DRNLVVFNLQNPQ 161
D L V++++ Q
Sbjct: 218 DATLRVWDIETGQ 230
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ 70
+ NI+++ S D ++ W G H V C + V SG D
Sbjct: 168 RDNIIISGSTDRTLKVWNAETG-----ECIHTLYGHTSTVRCMHLHEK--RVVSGSRDAT 220
Query: 71 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-QQL 129
+++W + +G + H A ++ V + + + +G++D +K WD +HT Q
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGH 278
Query: 130 PDRCYALTVRYPLMVVGTADRNLVVFNLQ 158
+R Y+L +V G+ D ++ V++++
Sbjct: 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVE 307
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 58 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
DG V SG D +++W + +G T+ H + + + N+L +G+ D T+K WD
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWD 345
Query: 118 TRQPNPVHTQQLPDR 132
+ + T Q P++
Sbjct: 346 IKTGQCLQTLQGPNK 360
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMW 74
+V+ S D +R W++ G + ++ H L S + + SG D VK+W
Sbjct: 292 VVSGSLDTSIRVWDVETGNC-IHTLT------GHQSLTSGMELKDNILVSGNADSTVKIW 344
Query: 75 PLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR 119
+ +G T+ + V + N + T S D T+K WD +
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ 70
K NILV+ + D+ V+ W+I G + H V C + + V + D
Sbjct: 328 KDNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGT 383
Query: 71 VKMWPLLSG 79
VK+W L +G
Sbjct: 384 VKLWDLKTG 392
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+++++ S D ++ W I G +A++ + +S V DD
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 121 PNPVHTQQLPDRCYAL 136
++T D ++L
Sbjct: 228 KKAMYTLSAQDEVFSL 243
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V+ + + SG DK +K+W
Sbjct: 81 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 136 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQ 185
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 34/97 (35%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV------------------ASVPKA 42
D V SL FSP R W + TG+ A KA
Sbjct: 238 DEVFSLAFSPN-------------RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79
+ H + W DG T+F+G D +++W +++
Sbjct: 285 AEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 117 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 158
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+++++ S D ++ W I G +A++ + +S V DD
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 121 PNPVHTQQLPDRCYAL 136
++T D ++L
Sbjct: 228 KKAMYTLSAQDEVFSL 243
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V+ + + SG DK +K+W
Sbjct: 81 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 136 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQ 185
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 34/96 (35%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV------------------ASVPKA 42
D V SL FSP R W + TG+ A KA
Sbjct: 238 DEVFSLAFSPN-------------RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78
+ H + W DG T+F+G D +++W +++
Sbjct: 285 AEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 117 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 158
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+++++ S D ++ W I G +A++ + +S V DD
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 121 PNPVHTQQLPDRCYAL 136
++T D ++L
Sbjct: 222 KKAMYTLSAQDEVFSL 237
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 72
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 73 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V+ + + SG DK +K+W
Sbjct: 75 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 129
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 130 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQ 179
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 34/97 (35%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV------------------ASVPKA 42
D V SL FSP R W + TG+ A KA
Sbjct: 232 DEVFSLAFSPN-------------RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79
+ H + W DG T+F+G D +++W +++
Sbjct: 279 AEPH---AVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 117 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 158
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 87 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+++++ S D ++ W I G +A++ + +S V DD
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 121 PNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 161
++T D ++L RY L + VF+L +PQ
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V+ + + SG DK +K+W
Sbjct: 81 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 136 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQ 185
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 117 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 158
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+++++ S D ++ W I G +A++ + +S V DD
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 121 PNPVHTQQLPDRCYAL 136
++T D ++L
Sbjct: 228 KKAMYTLSAQDEVFSL 243
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + +++ +GS DKT+K W
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V+ + + SG DK +K+W
Sbjct: 81 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 136 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQ 185
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK + W L Q V + H +++ + + SWDKTL+ W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 117 DTRQPNPVHTQQLPDRCYALTV----RYPLMVVGTADRNLVVFNLQ 158
D + + + + ++V + +++ G+ D+ + V+ ++
Sbjct: 93 DV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 18/88 (20%)
Query: 1 DSVSSLCFSPKANILVAT--------SWDNQVRCWEI--SRGGTGVASVPKASISHDHPV 50
D V SL FSP L A S D Q ++ G A+ P A
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA-------- 289
Query: 51 LCSTWKDDGTTVFSGGCDKQVKMWPLLS 78
+ W DG T+F+G D +++W +++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 17/171 (9%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+ + + + ILVA+ V WEI + + + A HD V + DGT
Sbjct: 97 VTDVAWVSEKGILVASD-SGAVELWEILEKESLLVN-KFAKYEHDDIVKTLSVFSDGTQA 154
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDTRQ 120
SGG D VK+W L + H + + VA P + L+ G D + WDTR+
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-DGRILLWDTRK 213
Query: 121 PNPVHTQQLPDRCYALTV---------RYPLMVVGTADRNLVVFNLQNPQT 162
P P D C + T+ + G N+ + N++NP +
Sbjct: 214 PKPA---TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGT 60
V S+ KA+ +++ S D ++ W I G +A++ + +S V DD
Sbjct: 110 VXSVDIDKKASXIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120
T+ S G DK VK W L H++ I + P+ L+A+ D + W+
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 121 PNPVHTQQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 161
+T D ++L RY L + VF+L +PQ
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATAT--GIKVFSL-DPQ 268
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT 60
V+SL S + N+L++ S D + W+++ G VP S H H V T DG
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
S DK +++W + +G H + + V + + + +GS DKT+K W
Sbjct: 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75
++ SWD +R W+++ G T + + H V + + SG DK +K+W
Sbjct: 81 LSASWDKTLRLWDVATGET-----YQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWT 135
Query: 76 LLSGGQPVTVAMHDAPIKEVAWIPE-------MNLLATGSWDKTLKYWDTRQ 120
+ G T+ H+ + +V +P + +++ G+ DK +K W+ Q
Sbjct: 136 -IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKXVKAWNLNQ 185
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 6 LCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS--HDHPVLCSTWKDDGTTVF 63
L ++P +L + D ++R W G G + + K+ +S H V W G +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIW----GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77
Query: 64 SGGCDKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121
S D +W T+ H+ +K VAW P NLLAT S DK++ W+ +
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137
Query: 122 N 122
+
Sbjct: 138 D 138
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+V + +SP N L + S+D W+ ++ + + H++ V W G
Sbjct: 63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG---HENEVKSVAWAPSGNL 119
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAM---HDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
+ + DK V +W + + V++ H +K V W P LLA+ S+D T+K +
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 119 RQPNPV 124
+ + V
Sbjct: 180 EEDDWV 185
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 6/129 (4%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
+ V S+ ++P N+L S D V WE+ SH V W
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDE--EDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 61 TVFSGGCDKQVKMWPLLSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
+ S D VK++ T+ H++ + +A+ P LA+ S D+T++ W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW-- 221
Query: 119 RQPNPVHTQ 127
RQ P + Q
Sbjct: 222 RQYLPGNEQ 230
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
+VSS+ P + +V+ S D ++ WE+ G K H V DGT
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-----YCVKTFTGHREWVRMVRPNQDGTL 248
Query: 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN------------------- 102
+ S D+ V++W + + + H ++ ++W PE +
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 103 -LLATGSWDKTLKYWD 117
L +GS DKT+K WD
Sbjct: 309 PFLLSGSRDKTIKMWD 324
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
DSV + F +L + S D ++ W+ G + + HDH V + +G
Sbjct: 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQ----GFECI-RTMHGHDHNVSSVSIMPNGD 205
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116
+ S DK +KMW + +G T H ++ V + L+A+ S D+T++ W
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+ + F P +++V+ S D ++ W+ G + H V ++ G +
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDISFDHSGKLL 165
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
S D +K+W T+ HD + V+ +P + + + S DKT+K W+ +
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 123 PVHT 126
V T
Sbjct: 226 CVKT 229
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 14 ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKM 73
L++ S D ++ W++S G + V HD+ V + G + S DK +++
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLV-----GHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 74 WPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119
W + T+ H+ + + + + TGS D+T+K W+ R
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG 107
HPV + + S D +K+W +G T+ H ++++++ LLA+
Sbjct: 117 HPVF--------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 168
Query: 108 SWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYP---LMVVGTADRNLVVFNLQ 158
S D T+K WD + + T D + P +V + D+ + ++ +Q
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAM--HDAPIKEVAWIPEM--NLLATGSWDKTL- 113
GT + + D+ VK++ + +GGQ + + H+ P+ +VAW M N+LA+ S+D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 114 ------KYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP-QTEFKR 166
W+ + H + C+A ++ G++D + + Q E K+
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 167 INSPLKYQTRCVAAFP 182
IN+ V+ P
Sbjct: 145 INNAHTIGCNAVSWAP 160
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 64 SGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNL 103
SGGCD +K+W GQ + H +++VAW P + L
Sbjct: 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
+L FSP + L + +V + + G + + +L + DG + S
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF-----ILSIAYSPDGKYLAS 181
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124
G D + ++ + +G T+ H PI+ + + P+ LL T S D +K +D + N
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 125 HT 126
T
Sbjct: 242 GT 243
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V S+ S I ++S D +R W++ G + S+ + + D +
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-IKSIDAGPVD----AWTLAFSPDSQYL 137
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
+G +V ++ + SG + ++ I +A+ P+ LA+G+ D + +D
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197
Query: 123 PVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161
+HT + +P R + L+V + D + ++++Q+
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
+ S+ +SP L + + D + ++I+ G + H P+ T+ D +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATG-----KLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
+ D +K++ + T++ H + + VA+ P+ + S DK++K WD
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 123 PVHT 126
VHT
Sbjct: 282 CVHT 285
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 27 WEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA 86
W + GV SV ISH P+ S+ D +++W L +G Q ++
Sbjct: 74 WSLEGHQLGVVSV---DISHTLPIAASS-----------SLDAHIRLWDLENGKQIKSID 119
Query: 87 MHDAPIKEVAWIPEMNLLATGS 108
+A+ P+ LATG+
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGT 141
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-E 100
H V W DG + SGG D V +WP G P+ T H +K VAW P +
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 101 MNLLAT--GSWDKTLKYWD 117
N+LAT G+ D+ ++ W+
Sbjct: 300 SNVLATGGGTSDRHIRIWN 318
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 61 TVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 187
Query: 119 RQ 120
+Q
Sbjct: 188 QQ 189
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PV-TVAMHDAPIKEVAWIP-E 100
H V W DG + SGG D V +WP G P+ T H +K VAW P +
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 101 MNLLAT--GSWDKTLKYWD 117
N+LAT G+ D+ ++ W+
Sbjct: 289 SNVLATGGGTSDRHIRIWN 307
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 61 TVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD
Sbjct: 117 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176
Query: 119 RQ 120
+Q
Sbjct: 177 QQ 178
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
G + S D Q+K+W + G P T+ H A + ++A I + + S D T++ W+
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210
Query: 119 RQPNPVHT 126
+HT
Sbjct: 211 GTGTTIHT 218
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
++ L F P L+++S D Q++ W + G S P+ I H V D G V
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 63 FSGGCDKQVKMWPLLSG 79
S D +++W +G
Sbjct: 197 LSASLDGTIRLWECGTG 213
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
G + S D Q+K+W + G P T+ H A + ++A I + + S D T++ W+
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 207
Query: 119 RQPNPVHT 126
+HT
Sbjct: 208 GTGTTIHT 215
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
++ L F P L+++S D Q++ W + G S P+ I H V D G
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 62 VFSGGCDKQVKMWPLLSG 79
V S D +++W +G
Sbjct: 193 VLSASLDGTIRLWECGTG 210
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPV---TVAMHDAPIKEVAWIP-E 100
H V W DG + SGG D V +WP G G V T H +K VAW P +
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 101 MNLLAT--GSWDKTLKYWD 117
N+LAT G+ D+ ++ W+
Sbjct: 209 SNVLATGGGTSDRHIRIWN 227
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 61 TVFSGGCDKQVKMWPLLSGG--QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118
V + D V +W SG Q + + I VAWI E N LA G+ ++ WD
Sbjct: 37 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 119 RQ 120
+Q
Sbjct: 97 QQ 98
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF 63
S LC +++ S D+ VR W+++ G + I H VL + +
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDVNTG-----EMLNTLIHHCEAVLHLRFNNGMMVTC 229
Query: 64 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNL----LATGSWDKTLKYWDTR 119
S D+ + +W + S P + + + A + ++ + + S D+T+K W+T
Sbjct: 230 SK--DRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 284
Query: 120 QPNPVHTQQLPDRCYA-LTVRYPLMVVGTADRNLVVFNLQ 158
V T R A L R L+V G++D + +++++
Sbjct: 285 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 324
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 7 CFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG 66
C + ++V+ S DN +R W+I G + + H+ V C + D + SG
Sbjct: 301 CLQYRDRLVVSGSSDNTIRLWDIECG-----ACLRVLEGHEELVRCIRF--DNKRIVSGA 353
Query: 67 CDKQVKMWPLLSGGQP---------VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117
D ++K+W L++ P T+ H + + + E ++++ S D T+ WD
Sbjct: 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSS-SHDDTILIWD 411
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRC---WEISRGG-TGVASVPKAS-------ISHDHP 49
+S+ S+ FSP+ ++L N C +E G G SVP S +H
Sbjct: 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293
Query: 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKE 94
V+ ++ D G T+ S G D +++ W + + + T+ MH D I+E
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 340
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRC---WEISRGG-TGVASVPKAS-------ISHDHP 49
+S+ S+ FSP+ ++L N C +E G G SVP S +H
Sbjct: 244 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 303
Query: 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH--DAPIKE 94
V+ ++ D G T+ S G D +++ W + + + T+ MH D I+E
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 350
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72
N+L++ DN + W++ GTG A + H + W DG + + DK+V+
Sbjct: 145 NVLLSAGXDNVILVWDV---GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 73 MWPLLSGGQPVTVAMHDAPIK-----EVAWIPEMNLLATG---SWDKTLKYWDTRQ-PNP 123
+ G VA D P + ++ E +L TG ++ + WDT+ P
Sbjct: 202 VIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 124 VHTQQL 129
+ Q+L
Sbjct: 259 LSLQEL 264
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 64 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN 122
+G DK V PL+ G H AP+ ++AW P N++A+GS D T+ W
Sbjct: 67 TGRVDKNV---PLVXG--------HTAPVLDIAWXPHNDNVIASGSEDCTVMVW------ 109
Query: 123 PVHTQQLPDRCYALTVRYPLMVV 145
++PD L +R P++ +
Sbjct: 110 -----EIPDGGLVLPLREPVITL 127
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASIS---HDHPVLCSTWKDDGTTV-FSGGCD 68
N++ + S D V WEI GG V + + I+ H V W V S G D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGL-VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Query: 69 KQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
+ +W + +G +T+ +H I V W + L+ T DK ++ + R+ V
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 127 QQLP 130
+ P
Sbjct: 214 KDRP 217
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72
N+L++ DN + W++ GTG A + H + W DG + + DK+V+
Sbjct: 145 NVLLSAGCDNVILVWDV---GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 73 MWPLLSGGQPVTVAMHDAPIK-----EVAWIPEMNLLATG---SWDKTLKYWDTRQ-PNP 123
+ G VA D P + ++ E +L TG ++ + WDT+ P
Sbjct: 202 VIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP 258
Query: 124 VHTQQL 129
+ Q+L
Sbjct: 259 LSLQEL 264
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 13 NILVATSWDNQVRCWEISRGGTGVASVPKASIS---HDHPVLCSTWKDDGTTV-FSGGCD 68
N++ + S D V WEI GG V + + I+ H V W V S GCD
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGL-VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 69 KQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT 126
+ +W + +G +T+ +H I V W + L+ T DK ++ + R+ V
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 127 QQLP 130
+ P
Sbjct: 214 KDRP 217
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 23/83 (27%)
Query: 64 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPN 122
+G DK V PL+ G H AP+ ++AW P N++A+GS D T+ W
Sbjct: 67 TGRVDKNV---PLVCG--------HTAPVLDIAWCPHNDNVIASGSEDCTVMVW------ 109
Query: 123 PVHTQQLPDRCYALTVRYPLMVV 145
++PD L +R P++ +
Sbjct: 110 -----EIPDGGLVLPLREPVITL 127
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS 64
+L SP + + + D + W++ ++ + H C +DGT +++
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWT 200
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
GG D V+ W L G Q + HD + I + + P LA G ++ +P+
Sbjct: 201 GGLDNTVRSWDLREGRQ---LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-----HDAPIKEVAW 97
+++H V T + V++GG VK+W + G V+ D I+
Sbjct: 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 98 IPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGT--ADRNL 152
+P+ L G TL WD P P +L CYAL + V + +D N+
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 153 VVFNLQN 159
V++L N
Sbjct: 166 AVWDLHN 172
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+ L + + ILVA+ V WE+ T + S HD V + GT
Sbjct: 85 VADLTWVGERGILVASD-SGAVELWELDENETLIVS-KFCKYEHDDIVSTVSVLSSGTQA 142
Query: 63 FSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQP 121
SG D +K+W L + H A + VA P + + + S D + WDTR P
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 122 NPV 124
P
Sbjct: 203 KPA 205
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.8 bits (81), Expect = 0.015, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 2 SVSSLCFSPK--ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW---- 55
SV+S+ ++P +L+ S D +V E GT + P +H V ++W
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPAT 157
Query: 56 -KDDGT--------TVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEMN 102
++DG +GG D VK+W S Q T+ H +++VAW P +
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 103 L---LATGSWDKTLKYW 116
L LA+ S D+T W
Sbjct: 218 LRSYLASVSQDRTCIIW 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 34/178 (19%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMW 74
+V S DN + W++ + +SVP HD+P++ T +++
Sbjct: 220 IVTGSRDNTLHVWKLPKE----SSVPDHGEEHDYPLVFHTPEEN---------------- 259
Query: 75 PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-QQLPDRC 133
P G + H A ++ V+ N++ +GS+D TL WD Q ++ DR
Sbjct: 260 PYFVG----VLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRI 313
Query: 134 YALTVRYPLM--VVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189
Y+ + + + D + +++L+N + + L+ T V FLV
Sbjct: 314 YSTIYDHERKRCISASXDTTIRIWDLENGELXY-----TLQGHTALVGLLRLSDKFLV 366
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 9 SPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD 68
S NI+V+ S+DN + W++++ H + + + + S D
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQ-----XKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 69 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD----TRQPNPV 124
+++W L +G T+ H A + + + L + + D +++ WD +R+ +
Sbjct: 332 TTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 125 HTQQLPDRCYALTVRY--PLMVVGTADRNLVVFNLQNPQTEFKRI--------NSPLKYQ 174
HT A+T Y ++V ++ ++NL++ + I + K +
Sbjct: 390 HTN-----LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444
Query: 175 TRCVAAFPDQQGFL 188
T A D Q FL
Sbjct: 445 TLVAAVEKDGQSFL 458
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 3 VSSLCFSPKANILVAT-SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
V+ + +P + +AT S D V+ W++ R G AS S+ H HPV + + DG
Sbjct: 253 VTHVALNPCCDWFLATASVDQTVKIWDL-RQVRGKASF-LYSLPHRHPVNAACFSPDGAR 310
Query: 62 VFSGGCDKQVKMW-------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 109
+ + +++++ PL P H PIK AW P NL+ G +
Sbjct: 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK-AAWHPRYNLIVVGRY 364
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 77 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 135
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 292
Query: 136 LTVRYPL 142
L R+P+
Sbjct: 293 LPHRHPV 299
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 3 VSSLCFSPKANILVAT-SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
V+ + +P + +AT S D V+ W++ R G AS S+ H HPV + + DG
Sbjct: 253 VTHVALNPCCDWFLATASVDQTVKIWDL-RQVRGKASF-LYSLPHRHPVNAACFSPDGAR 310
Query: 62 VFSGGCDKQVKMW-------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 109
+ + +++++ PL P H PIK AW P NL+ G +
Sbjct: 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK-AAWHPRYNLIVVGRY 364
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 77 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 135
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 292
Query: 136 LTVRYPL 142
L R+P+
Sbjct: 293 LPHRHPV 299
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 3 VSSLCFSPKANILVAT-SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTT 61
V+ + +P + +AT S D V+ W++ R G AS S+ H HPV + + DG
Sbjct: 254 VTHVALNPCCDWFLATASVDQTVKIWDL-RQVRGKASF-LYSLPHRHPVNAACFSPDGAR 311
Query: 62 VFSGGCDKQVKMW-------PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW 109
+ + +++++ PL P H PIK AW P NL+ G +
Sbjct: 312 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK-AAWHPRYNLIVVGRY 365
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 77 LSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA 135
+ G + + MH + VA P + LAT S D+T+K WD RQ + Y+
Sbjct: 239 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-----VRGKASFLYS 293
Query: 136 LTVRYPL 142
L R+P+
Sbjct: 294 LPHRHPV 300
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRG-GTGVASVPK-ASISHDHPVLCSTWKDDGT 60
V S+ ++P ++ +T D + + G TGV +++H V TW DGT
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 61 TVFSGGCDKQVKMW 74
+ S DK +K+W
Sbjct: 253 KIASASADKTIKIW 266
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 36 VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-GQPVTVAMHDAPIKE 94
+ S+ + H+ + + DG T+FS + + W + +G V +H I
Sbjct: 313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372
Query: 95 VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVV 154
+ + +L T SWD LK ++ + ++ + PL + +AD ++ V
Sbjct: 373 IKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSS----QPLGLAVSADGDIAV 427
Query: 155 ---FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ 185
+ + K P+ Y + CVA D+Q
Sbjct: 428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 87 MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122
H A + V+W P+ LATGS D ++ W+ +P+
Sbjct: 534 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVA--------- 96
H V + DG+ S G D + ++ + G + T D +K VA
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLT 246
Query: 97 WIPEMNLLATGSWDKTLKYWD 117
W P+ +A+ S DKT+K W+
Sbjct: 247 WSPDGTKIASASADKTIKIWN 267
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 15/147 (10%)
Query: 33 GTGVASVPKASIS-------HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ--PV 83
GT V +VP S++ H H + G SG V++W
Sbjct: 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT 97
Query: 84 TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKY---WDTRQPNPVHTQQLPD-RCYALTV 138
T+ + P+K+++W E + A G + + +DT N T Q
Sbjct: 98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 157
Query: 139 RYPLMVVGTADRNLVVFNLQNPQTEFK 165
P ++ +D N V + P +FK
Sbjct: 158 SRPFRIISGSDDNTVAI-FEGPPFKFK 183
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 58 DGTTVFSGGCDKQVKMWPLLSGGQPVTVA-------------MHDAPIKEVAWIP-EMNL 103
+G + SGG D + ++ L + + +H ++ V W P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 104 LATGSWDKTLKYWDTRQPNPVHTQQLPDRCYA-----LTVRYPLMVVGT 147
+ S+DKTLK WDT + Y+ ++ ++ L+ VGT
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT 163
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 3 VSSLCFSPKANILVAT-SWDNQVRCWEISRG-----------GTGVASVPKASISHDHPV 50
+ ++ +SP+ + ++AT S D++V+ W++ R G +V A+ +H+ V
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 51 LCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79
+ DG + + G D ++++W +G
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 70 QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPN 122
+V++ L SG + H I V+W P + +LAT S D +K WD R+ +
Sbjct: 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+ LCF+ L+ DN++R W S G + + K +C+ K
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK---------VCNNSKKGLKFT 298
Query: 63 FSGGCDKQ---------VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTL 113
S GC + + ++ + SG Q + H + + L +GS D +
Sbjct: 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358
Query: 114 KYW 116
W
Sbjct: 359 LAW 361
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 34/178 (19%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMW 74
+V S DN + W++ + +SVP HD+P++ T +++
Sbjct: 220 IVTGSRDNTLHVWKLPKE----SSVPDHGEEHDYPLVFHTPEEN---------------- 259
Query: 75 PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT-QQLPDRC 133
P G + H A ++ V+ N++ +GS+D TL WD Q ++ DR
Sbjct: 260 PYFVG----VLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313
Query: 134 YALTVRYPLM--VVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189
Y+ + + + D + +++L+N + + L+ T V FLV
Sbjct: 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMY-----TLQGHTALVGLLRLSDKFLV 366
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 78/194 (40%), Gaps = 26/194 (13%)
Query: 9 SPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD 68
S NI+V+ S+DN + W++++ H + + + + S D
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQ-----MKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 69 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD----TRQPNPV 124
+++W L +G T+ H A + + + L + + D +++ WD +R+ +
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSYH 389
Query: 125 HTQQLPDRCYALTVRY--PLMVVGTADRNLVVFNLQNPQTEFKRI--------NSPLKYQ 174
HT A+T Y ++V ++ ++NL++ + I + K +
Sbjct: 390 HTN-----LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444
Query: 175 TRCVAAFPDQQGFL 188
T A D Q FL
Sbjct: 445 TLVAAVEKDGQSFL 458
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG 59
++++ L F P+ N+L++ S D+ +R W I + ++ H VL + + G
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 60 TTVFSGGCDKQVKMWPLLS 78
+ S G D +K+W + S
Sbjct: 169 EKIMSCGMDHSLKLWRINS 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG 59
++++ L F P+ N+L++ S D+ +R W I + ++ H VL + + G
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 60 TTVFSGGCDKQVKMWPLLS 78
+ S G D +K+W + S
Sbjct: 173 EKIMSCGMDHSLKLWRINS 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG 59
++++ L F P+ N+L++ S D+ +R W I + ++ H VL + + G
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 60 TTVFSGGCDKQVKMWPLLS 78
+ S G D +K+W + S
Sbjct: 174 EKIMSCGMDHSLKLWRINS 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG 59
++++ L F P+ N+L++ S D+ +R W I + ++ H VL + + G
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLG 209
Query: 60 TTVFSGGCDKQVKMWPLLS 78
+ S G D +K+W + S
Sbjct: 210 EKIMSCGMDHSLKLWRINS 228
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG 59
++++ L F P+ N+L++ S D+ +R W I + ++ H VL + + G
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQ--TDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 60 TTVFSGGCDKQVKMWPLLS 78
+ S G D +K+W + S
Sbjct: 173 EKIMSCGMDHSLKLWRINS 191
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%)
Query: 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA 105
H+ P+ + +G +FS D +W L+G + T+ H I +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV 90
Query: 106 TGSWDKTLKYWDTRQPNPVHTQQLP 130
TGS D ++K WD V T + P
Sbjct: 91 TGSADYSIKLWDVSNGQCVATWKSP 115
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 2 SVSSLCFSPKAN---ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW--- 55
SV+S+ ++P +LVA+S D +V E GT + P +H V ++W
Sbjct: 103 SVNSVQWAPHEYGPLLLVASS-DGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPA 158
Query: 56 --KDDGT--------TVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEM 101
++DG +GG D VK+W S Q T+ H +++VAW P +
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 102 NL---LATGSWDKTLKYW 116
L LA+ S D+T W
Sbjct: 219 LLRSYLASVSQDRTCIIW 236
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 8 FSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK---DDGTTVFS 64
F+P + D+ + +S ++P + + H S+ + D T + +
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 65 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-------NLLATGSWDKTLKYWD 117
G D+ +W + +G Q +++ + P A + + N+ +GS D T++ WD
Sbjct: 176 GSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 118 TR 119
R
Sbjct: 235 LR 236
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAM----HDAPIKEVAWIPEMNLLATGSWDKTLK 114
G +F+G + +W L + + H+ I + + + L TGSWDK LK
Sbjct: 310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK 369
Query: 115 YW 116
W
Sbjct: 370 IW 371
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV 62
V+S+ FS +L A + W+ V ++ SH+ + C DG+ +
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 63 FSGGCDKQVKMWPL 76
+G DK +K+W
Sbjct: 360 CTGSWDKNLKIWAF 373
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 129
T+ H + + W PE N + + S D L W+ H +L
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL 106
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 2 SVSSLCFSPKAN---ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW--- 55
SV+S+ ++P +LVA+S D +V E GT + P +H V ++W
Sbjct: 101 SVNSVQWAPHEYGPLLLVASS-DGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPA 156
Query: 56 --KDDGT--------TVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEM 101
++DG +GG D VK+W S Q T+ H +++VAW P +
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 102 NL---LATGSWDKTLKYW 116
L LA+ S D+T W
Sbjct: 217 LLRSYLASVSQDRTCIIW 234
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 62 VFSGGCDKQVKMWPLLSGGQPVT-VAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTR 119
V +GG D + +W + G PV+ + H+A + EV + P L T S D +L +WD
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 120 QPNP 123
P
Sbjct: 312 TDVP 315
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 2 SVSSLCFSPKAN---ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW--- 55
SV+S+ ++P +LVA+S D +V E GT + P +H V ++W
Sbjct: 101 SVNSVQWAPHEYGPMLLVASS-DGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPA 156
Query: 56 --KDDGT--------TVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEM 101
++DG +GG D VK+W S Q T+ H +++VAW P +
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 102 NL---LATGSWDKTLKYW 116
L +A+ S D+T W
Sbjct: 217 LLRSYMASVSQDRTCIIW 234
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT 60
+ V+ L +S N +V + ++R W + V + +A P++ W DGT
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRA------PIVSVKWNKDGT 162
Query: 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMH 88
+ S + +W ++SG TV H
Sbjct: 163 HIISMDVENVTILWNVISG----TVMQH 186
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 44 ISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNL 103
I H P+ + D + S D +++W +G H I +W+ + +
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 104 LATGSWDKTLKYWDTRQ 120
++ S D +++ W +Q
Sbjct: 304 ISC-SMDGSVRLWSLKQ 319
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPV---------LCS 53
++S+C+ + +L+ D T + VP + S + P+ +CS
Sbjct: 62 LNSVCYDSEKELLLFGGKD------------TXINGVPLFATSGEDPLYTLIGHQGNVCS 109
Query: 54 TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKT 112
DG V SG DK K+W G + H+A + + + N T S DKT
Sbjct: 110 LSFQDGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 113 LKYW 116
+K W
Sbjct: 167 IKLW 170
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTVFSGGCDKQ-V 71
L++ S D+ V W+I+ G V +I H + W ++F D Q +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 72 KMWPLLSG--GQPVT-VAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ 120
+W S +P V H A + +++ P +LATGS DKT+ WD R
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTVFSGGCDKQVK 72
L++ S D+ V W+I+ G V +I H + W ++F D Q
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 73 M-WPLLSG--GQPV-TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ 120
M W S +P V H A + +++ P +LATGS DKT+ WD R
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 27/138 (19%)
Query: 2 SVSSLCFSPKA---NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW--- 55
SV+S+ ++P +LVA+S D +V E GT + P +H V ++W
Sbjct: 101 SVNSVQWAPHEYGPXLLVASS-DGKVSVVEFKENGT---TSPIIIDAHAIGVNSASWAPA 156
Query: 56 --KDDGT--------TVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKEVAWIPEM 101
++DG +GG D VK+W S Q T+ H +++VAW P +
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 102 NL---LATGSWDKTLKYW 116
L A+ S D+T W
Sbjct: 217 LLRSYXASVSQDRTCIIW 234
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 6 LCFSPKAN-ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTV 62
L ++P N L++ S D+ + W+I+ + +I H + W ++
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 63 FSGGCDKQVKM-WPLLSGGQPV---TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWD 117
F D Q M W + TV H A + +++ P +LATGS DKT+ WD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 118 TRQ 120
R
Sbjct: 307 LRN 309
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 6 LCFSPKANILVATSWDNQVRC-WEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTV 62
L ++P N + ++ D+ C W+I+ + +I H + W ++
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 63 FSGGCDKQVKM-WPLLSGGQPV---TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWD 117
F D Q M W + TV H A + +++ P +LATGS DKT+ WD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 118 TRQ 120
R
Sbjct: 309 LRN 311
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 6 LCFSPKANILVATSWDNQVRC-WEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTV 62
L ++P N + ++ D+ C W+I+ + +I H + W ++
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 63 FSGGCDKQVKM-WPLLSGGQPV---TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWD 117
F D Q M W + TV H A + +++ P +LATGS DKT+ WD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 118 TRQ 120
R
Sbjct: 311 LRN 313
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLA 105
H CS+ D VF DK W L + HD+ I + W PE ++A
Sbjct: 23 HVATCSS--DQHIKVFK--LDKDTSNWELSDSWRA-----HDSSIVAIDWASPEYGRIIA 73
Query: 106 TGSWDKTLKYWD 117
+ S+DKT+K W+
Sbjct: 74 SASYDKTVKLWE 85
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 15 LVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS--TWKDDGTTVFSGGCDKQVK 72
L++ S D+ + W+IS V +I H + +W ++F D Q
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 73 M-WPLLSGGQPV---TVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQ 120
M W S +V H A + +++ P +LATGS DKT+ WD R
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLA 105
H CS+ D VF DK W L + HD+ I + W PE ++A
Sbjct: 25 HVATCSS--DQHIKVFK--LDKDTSNWELSDSWRA-----HDSSIVAIDWASPEYGRIIA 75
Query: 106 TGSWDKTLKYWD 117
+ S+DKT+K W+
Sbjct: 76 SASYDKTVKLWE 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWI-PEMN-LLA 105
H CS+ D VF DK W L + HD+ I + W PE ++A
Sbjct: 25 HVATCSS--DQHIKVFK--LDKDTSNWELSDSWR-----AHDSSIVAIDWASPEYGRIIA 75
Query: 106 TGSWDKTLKYWD 117
+ S+DKT+K W+
Sbjct: 76 SASYDKTVKLWE 87
>pdb|1DFX|A Chain A, Desulfoferrodoxin From Desulfovibrio Desulfuricans, Atcc
27774
Length = 125
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 58 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYW 116
+G+T G +K V + + GG + V P++E WI + LLA G S+ K LK
Sbjct: 38 EGST--DGAMEKHVPVIEKVDGGYLIKVGSVPHPMEEKHWIEWIELLADGRSYTKFLKPG 95
Query: 117 DT 118
D
Sbjct: 96 DA 97
>pdb|3PNM|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
pdb|3PNM|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56a)
Length = 357
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 103 LLATGSWDKTLKYWDTRQPNPVHTQQLP------DRCYAL 136
LL GS+ +TL++WD +Q + QQ DR AL
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIAL 282
>pdb|1UOE|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
pdb|1UOE|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Glyceraldehyde
Length = 366
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 LLATGSWDKTLKYWDTRQPNPVHTQQ 128
LL GS+ +TL++WD +Q + QQ
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQ 277
>pdb|3PNO|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNO|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n)
pdb|3PNQ|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|C Chain C, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
pdb|3PNQ|D Chain D, Crystal Structure Of E.Coli Dha Kinase Dhak (H56n) Complex
With Dha
Length = 357
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 103 LLATGSWDKTLKYWDTRQPNPVHTQQLP------DRCYAL 136
LL GS+ +TL++WD +Q + QQ DR AL
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIAL 282
>pdb|1OI2|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI2|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|A Chain A, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1OI3|B Chain B, X-Ray Structure Of The Dihydroxyacetone Kinase From
Escherichia Coli
pdb|1UOD|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
pdb|1UOD|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From E.
Coli In Complex With Dihydroxyacetone-Phosphate
Length = 366
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 103 LLATGSWDKTLKYWDTRQPNPVHTQQ 128
LL GS+ +TL++WD +Q + QQ
Sbjct: 252 LLVNGSYHRTLRFWDYQQGSWQEEQQ 277
>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
Length = 481
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 121 PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLV--------VFNLQNPQTEFKRINS 169
P P+H Q LP + +TV YP G D L +FNL + + FKRIN+
Sbjct: 208 PEPLHFQ-LPGKKNLVTVLYP---SGIPDDQLQAYRKELHDLFNLPHDRPYFKRINA 260
>pdb|3PNK|A Chain A, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNK|B Chain B, Crystal Structure Of E.Coli Dha Kinase Dhak
pdb|3PNL|A Chain A, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 357
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 103 LLATGSWDKTLKYWDTRQPNPVHTQQLP------DRCYAL 136
LL GS+ +TL++WD +Q + QQ DR AL
Sbjct: 243 LLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGDRVIAL 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,437,483
Number of Sequences: 62578
Number of extensions: 268738
Number of successful extensions: 1148
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 363
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)