Query 039044
Match_columns 194
No_of_seqs 429 out of 1120
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 7.4E-39 1.6E-43 217.9 15.4 184 2-192 263-450 (459)
2 KOG0263 Transcription initiati 100.0 2.4E-37 5.3E-42 224.1 16.9 186 1-193 452-640 (707)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-37 4.9E-42 210.7 13.8 184 2-192 219-408 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.3E-36 2.9E-41 205.2 16.2 185 1-191 116-386 (480)
5 KOG0279 G protein beta subunit 100.0 3E-35 6.4E-40 191.1 19.3 181 2-191 65-252 (315)
6 KOG0271 Notchless-like WD40 re 100.0 4E-35 8.6E-40 198.1 17.3 184 2-192 159-429 (480)
7 KOG0286 G-protein beta subunit 100.0 1.4E-33 3E-38 184.6 21.6 190 2-192 99-293 (343)
8 PTZ00421 coronin; Provisional 100.0 6.3E-33 1.4E-37 202.3 26.7 192 1-192 76-279 (493)
9 KOG0273 Beta-transducin family 100.0 1E-33 2.2E-38 195.5 20.3 182 2-191 237-471 (524)
10 KOG0279 G protein beta subunit 100.0 1.3E-33 2.9E-38 183.5 19.1 189 1-191 16-211 (315)
11 KOG0647 mRNA export protein (c 100.0 1.8E-33 4E-38 184.7 19.7 187 1-191 28-217 (347)
12 KOG0286 G-protein beta subunit 100.0 4.2E-33 9.1E-38 182.3 20.4 182 2-191 147-334 (343)
13 KOG0266 WD40 repeat-containing 100.0 7.9E-33 1.7E-37 201.9 23.5 188 2-192 161-354 (456)
14 KOG0645 WD40 repeat protein [G 100.0 1.9E-32 4.2E-37 177.5 22.4 191 1-192 15-215 (312)
15 KOG0315 G-protein beta subunit 100.0 7E-33 1.5E-37 177.8 19.1 185 2-192 42-278 (311)
16 KOG0263 Transcription initiati 100.0 2.6E-33 5.7E-38 203.4 19.0 155 2-161 495-652 (707)
17 KOG0285 Pleiotropic regulator 100.0 2.3E-33 4.9E-38 188.4 17.0 185 1-192 152-339 (460)
18 KOG0266 WD40 repeat-containing 100.0 1.3E-32 2.7E-37 200.8 22.0 185 2-192 205-399 (456)
19 KOG0284 Polyadenylation factor 100.0 4.1E-34 8.9E-39 194.3 12.7 186 1-192 181-370 (464)
20 KOG0265 U5 snRNP-specific prot 100.0 1.6E-32 3.5E-37 180.1 17.5 184 1-190 48-234 (338)
21 KOG0277 Peroxisomal targeting 100.0 2.3E-32 4.9E-37 175.9 17.7 186 1-191 61-253 (311)
22 KOG0284 Polyadenylation factor 100.0 3.6E-33 7.8E-38 189.8 11.8 182 1-190 139-324 (464)
23 KOG0316 Conserved WD40 repeat- 100.0 4.3E-31 9.2E-36 168.6 17.7 183 1-192 18-203 (307)
24 KOG0291 WD40-repeat-containing 100.0 7.4E-31 1.6E-35 190.5 20.9 183 2-191 309-497 (893)
25 KOG0318 WD40 repeat stress pro 100.0 3.3E-30 7.1E-35 180.5 21.4 187 3-191 193-506 (603)
26 KOG0275 Conserved WD40 repeat- 100.0 4.1E-32 8.9E-37 180.9 11.1 189 2-190 215-411 (508)
27 KOG0273 Beta-transducin family 100.0 3.8E-30 8.3E-35 177.9 20.8 188 1-191 277-512 (524)
28 PTZ00420 coronin; Provisional 100.0 2.9E-29 6.2E-34 184.5 26.4 190 1-191 75-282 (568)
29 KOG0295 WD40 repeat-containing 100.0 3.9E-30 8.4E-35 172.8 18.8 183 2-191 195-395 (406)
30 KOG0291 WD40-repeat-containing 100.0 7.9E-30 1.7E-34 185.2 21.2 184 1-191 351-539 (893)
31 KOG0315 G-protein beta subunit 100.0 1.5E-29 3.2E-34 162.6 18.9 171 2-180 85-308 (311)
32 KOG0295 WD40 repeat-containing 100.0 4.6E-30 9.9E-35 172.5 17.0 186 1-192 151-354 (406)
33 KOG0283 WD40 repeat-containing 100.0 1.1E-29 2.3E-34 185.9 19.6 187 1-190 268-520 (712)
34 KOG0276 Vesicle coat complex C 100.0 3.5E-30 7.7E-35 183.8 16.6 185 1-191 98-288 (794)
35 PLN00181 protein SPA1-RELATED; 100.0 1.3E-28 2.8E-33 191.1 25.8 190 1-192 484-680 (793)
36 cd00200 WD40 WD40 domain, foun 100.0 6.9E-28 1.5E-32 166.3 24.5 184 1-191 10-196 (289)
37 KOG0310 Conserved WD40 repeat- 100.0 5E-29 1.1E-33 172.9 18.0 183 2-191 70-257 (487)
38 KOG0319 WD40-repeat-containing 100.0 4E-29 8.6E-34 180.9 18.2 188 2-191 413-608 (775)
39 KOG1036 Mitotic spindle checkp 100.0 2.7E-28 5.9E-33 160.8 20.2 183 1-191 14-196 (323)
40 KOG0278 Serine/threonine kinas 100.0 2E-29 4.3E-34 162.3 14.6 184 2-192 102-287 (334)
41 KOG0645 WD40 repeat protein [G 100.0 4E-28 8.6E-33 157.6 19.9 171 2-181 63-242 (312)
42 KOG0292 Vesicle coat complex C 100.0 4.6E-29 1E-33 184.3 17.6 186 2-192 11-226 (1202)
43 KOG0296 Angio-associated migra 100.0 1.1E-27 2.4E-32 161.1 20.7 185 1-191 65-252 (399)
44 KOG0282 mRNA splicing factor [ 100.0 1E-29 2.3E-34 176.1 10.8 184 2-191 216-404 (503)
45 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-27 6.7E-32 156.3 21.6 187 1-192 15-207 (311)
46 cd00200 WD40 WD40 domain, foun 100.0 3.5E-27 7.6E-32 162.7 23.0 184 2-192 95-281 (289)
47 KOG1407 WD40 repeat protein [F 100.0 5.1E-28 1.1E-32 156.5 17.0 184 2-191 22-291 (313)
48 PLN00181 protein SPA1-RELATED; 100.0 3.5E-27 7.6E-32 183.2 24.8 183 2-192 534-728 (793)
49 KOG0289 mRNA splicing factor [ 100.0 9.4E-28 2E-32 164.8 19.0 189 1-192 304-496 (506)
50 KOG0973 Histone transcription 100.0 3.7E-28 8E-33 182.1 18.2 191 1-192 70-345 (942)
51 KOG0318 WD40 repeat stress pro 100.0 2.8E-27 6.1E-32 165.9 21.4 184 2-192 149-340 (603)
52 KOG0282 mRNA splicing factor [ 100.0 1E-28 2.2E-33 171.3 13.5 180 2-189 260-491 (503)
53 KOG0293 WD40 repeat-containing 100.0 5.4E-28 1.2E-32 165.3 16.5 185 1-189 225-499 (519)
54 KOG0643 Translation initiation 100.0 4.7E-27 1E-31 152.5 20.0 184 2-192 12-210 (327)
55 KOG0310 Conserved WD40 repeat- 100.0 3.3E-27 7.2E-32 163.9 20.2 181 2-192 112-299 (487)
56 PTZ00421 coronin; Provisional 100.0 1.6E-26 3.4E-31 169.0 24.6 186 3-190 23-229 (493)
57 KOG0288 WD40 repeat protein Ti 100.0 1.6E-27 3.4E-32 162.7 17.8 186 1-192 220-451 (459)
58 KOG0292 Vesicle coat complex C 100.0 1.1E-27 2.4E-32 177.1 18.1 187 1-192 52-270 (1202)
59 KOG0267 Microtubule severing p 100.0 2.5E-29 5.5E-34 181.8 9.3 185 1-192 71-258 (825)
60 KOG0640 mRNA cleavage stimulat 100.0 3.4E-28 7.4E-33 161.1 13.4 189 2-191 114-324 (430)
61 KOG0264 Nucleosome remodeling 100.0 1.9E-27 4.1E-32 163.7 17.0 189 4-192 181-393 (422)
62 KOG0973 Histone transcription 100.0 1.1E-27 2.5E-32 179.5 17.3 189 2-191 15-238 (942)
63 KOG0275 Conserved WD40 repeat- 100.0 1.4E-28 3.1E-33 164.2 11.1 184 1-190 264-497 (508)
64 KOG0640 mRNA cleavage stimulat 100.0 2.3E-27 4.9E-32 157.3 15.4 190 1-193 173-417 (430)
65 KOG0265 U5 snRNP-specific prot 100.0 1.8E-26 4E-31 151.8 19.4 190 1-192 91-328 (338)
66 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.5E-31 158.8 19.4 184 2-191 263-451 (506)
67 KOG0305 Anaphase promoting com 100.0 9.2E-27 2E-31 166.1 18.4 181 1-191 218-406 (484)
68 KOG0281 Beta-TrCP (transducin 100.0 7.3E-28 1.6E-32 161.8 12.0 185 1-193 238-468 (499)
69 KOG0306 WD40-repeat-containing 100.0 6.8E-27 1.5E-31 170.1 17.8 191 1-193 455-655 (888)
70 KOG0296 Angio-associated migra 100.0 4E-26 8.7E-31 153.7 20.1 184 1-192 107-388 (399)
71 KOG0269 WD40 repeat-containing 100.0 1.3E-27 2.8E-32 174.1 13.5 186 3-191 90-283 (839)
72 KOG0276 Vesicle coat complex C 100.0 5.5E-27 1.2E-31 167.7 16.4 184 2-192 57-247 (794)
73 KOG0277 Peroxisomal targeting 100.0 2.2E-27 4.9E-32 153.0 12.7 182 2-189 106-295 (311)
74 KOG0641 WD40 repeat protein [G 100.0 1.4E-25 3.1E-30 143.1 20.7 188 1-191 90-292 (350)
75 PTZ00420 coronin; Provisional 100.0 1.8E-25 3.9E-30 164.7 24.4 167 18-191 50-233 (568)
76 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-25 3E-30 148.5 21.2 182 2-191 102-294 (311)
77 KOG0772 Uncharacterized conser 100.0 2.3E-27 4.9E-32 166.3 13.6 188 2-191 270-476 (641)
78 KOG0285 Pleiotropic regulator 100.0 1.1E-26 2.5E-31 156.4 15.9 179 2-188 195-376 (460)
79 KOG0281 Beta-TrCP (transducin 100.0 1.1E-27 2.3E-32 161.1 10.7 176 2-190 199-416 (499)
80 KOG0319 WD40-repeat-containing 99.9 8.1E-27 1.7E-31 169.1 14.8 153 2-159 465-620 (775)
81 KOG0646 WD40 repeat protein [G 99.9 1.9E-25 4.1E-30 154.5 20.6 187 1-192 82-297 (476)
82 KOG2096 WD40 repeat protein [G 99.9 7.5E-26 1.6E-30 150.5 17.4 190 1-192 87-393 (420)
83 KOG0772 Uncharacterized conser 99.9 2.7E-26 5.9E-31 160.9 16.0 189 2-190 169-382 (641)
84 KOG0639 Transducin-like enhanc 99.9 7.6E-27 1.7E-31 163.5 13.1 184 2-191 467-652 (705)
85 KOG0294 WD40 repeat-containing 99.9 2.4E-25 5.2E-30 147.6 18.8 182 1-191 44-270 (362)
86 KOG0264 Nucleosome remodeling 99.9 5.5E-26 1.2E-30 156.5 16.3 191 1-192 125-336 (422)
87 KOG0269 WD40 repeat-containing 99.9 3.8E-26 8.1E-31 166.5 16.2 183 2-190 135-328 (839)
88 KOG0283 WD40 repeat-containing 99.9 6.8E-26 1.5E-30 166.2 17.3 183 1-192 370-566 (712)
89 KOG0313 Microtubule binding pr 99.9 2.6E-25 5.7E-30 150.5 18.8 189 1-191 145-364 (423)
90 KOG0316 Conserved WD40 repeat- 99.9 2E-25 4.3E-30 142.8 16.7 182 2-191 103-289 (307)
91 KOG1273 WD40 repeat protein [G 99.9 1.1E-25 2.4E-30 149.4 15.8 184 3-192 26-269 (405)
92 KOG0305 Anaphase promoting com 99.9 4.1E-25 8.9E-30 157.7 19.4 183 2-192 262-451 (484)
93 KOG0313 Microtubule binding pr 99.9 6.2E-25 1.4E-29 148.7 17.7 187 2-192 195-408 (423)
94 KOG0299 U3 snoRNP-associated p 99.9 2.4E-24 5.2E-29 149.0 20.1 184 2-191 204-444 (479)
95 KOG0268 Sof1-like rRNA process 99.9 4.4E-26 9.5E-31 153.6 11.0 183 1-191 67-291 (433)
96 KOG0303 Actin-binding protein 99.9 1.1E-24 2.4E-29 148.4 17.0 193 1-194 82-285 (472)
97 KOG0308 Conserved WD40 repeat- 99.9 9.3E-25 2E-29 156.8 16.4 185 2-191 75-274 (735)
98 KOG2055 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 150.5 15.9 188 1-192 214-455 (514)
99 KOG0306 WD40-repeat-containing 99.9 8E-25 1.7E-29 159.4 15.3 154 1-159 509-665 (888)
100 KOG0643 Translation initiation 99.9 7.9E-24 1.7E-28 137.7 18.2 181 1-190 53-249 (327)
101 KOG0288 WD40 repeat protein Ti 99.9 4.3E-26 9.2E-31 155.8 8.2 186 1-192 176-361 (459)
102 KOG1332 Vesicle coat complex C 99.9 4E-25 8.6E-30 142.0 11.9 188 3-192 14-231 (299)
103 KOG1036 Mitotic spindle checkp 99.9 1.3E-23 2.9E-28 138.8 19.2 181 1-193 55-295 (323)
104 KOG0639 Transducin-like enhanc 99.9 5.6E-25 1.2E-29 154.3 12.6 186 3-192 422-612 (705)
105 KOG4283 Transcription-coupled 99.9 8.2E-24 1.8E-28 139.6 16.5 190 1-191 44-265 (397)
106 KOG0641 WD40 repeat protein [G 99.9 9.5E-23 2.1E-27 130.3 20.3 189 2-191 34-250 (350)
107 KOG0647 mRNA export protein (c 99.9 4.7E-23 1E-27 136.1 19.2 186 1-194 73-315 (347)
108 KOG1274 WD40 repeat protein [G 99.9 4.1E-23 8.9E-28 153.3 20.5 182 3-191 59-251 (933)
109 KOG1332 Vesicle coat complex C 99.9 1.3E-23 2.7E-28 135.2 15.0 188 1-191 57-275 (299)
110 KOG0302 Ribosome Assembly prot 99.9 1.9E-23 4E-28 141.7 16.1 187 3-190 154-365 (440)
111 KOG1274 WD40 repeat protein [G 99.9 3.5E-23 7.6E-28 153.6 18.9 176 2-188 98-286 (933)
112 KOG0308 Conserved WD40 repeat- 99.9 2.2E-23 4.7E-28 149.8 17.3 162 1-162 118-289 (735)
113 KOG0302 Ribosome Assembly prot 99.9 1.5E-23 3.2E-28 142.1 15.5 186 4-191 215-427 (440)
114 KOG0274 Cdc4 and related F-box 99.9 2.7E-23 5.8E-28 152.7 18.1 179 1-191 250-430 (537)
115 KOG2919 Guanine nucleotide-bin 99.9 2.1E-23 4.6E-28 139.1 15.8 187 3-191 161-359 (406)
116 KOG0267 Microtubule severing p 99.9 5.4E-25 1.2E-29 159.7 7.4 183 3-192 31-216 (825)
117 KOG0274 Cdc4 and related F-box 99.9 2E-22 4.3E-27 148.2 20.8 178 3-191 211-389 (537)
118 KOG0270 WD40 repeat-containing 99.9 6.9E-23 1.5E-27 141.3 15.8 178 12-190 192-391 (463)
119 KOG0294 WD40 repeat-containing 99.9 6E-22 1.3E-26 131.6 17.8 174 14-192 3-188 (362)
120 KOG4328 WD40 protein [Function 99.9 8.1E-23 1.8E-27 141.5 14.0 190 1-191 187-388 (498)
121 KOG0278 Serine/threonine kinas 99.9 7.3E-24 1.6E-28 136.9 8.0 182 1-192 60-244 (334)
122 KOG1445 Tumor-specific antigen 99.9 6.9E-23 1.5E-27 147.7 12.7 160 2-161 629-801 (1012)
123 KOG0299 U3 snoRNP-associated p 99.9 3.7E-22 7.9E-27 138.3 15.4 186 2-191 144-345 (479)
124 KOG0300 WD40 repeat-containing 99.9 5E-22 1.1E-26 132.7 15.1 177 2-184 274-456 (481)
125 KOG0771 Prolactin regulatory e 99.9 4.8E-22 1E-26 136.3 14.9 180 4-190 148-342 (398)
126 KOG4283 Transcription-coupled 99.9 4.5E-22 9.7E-27 131.5 14.1 155 2-162 103-280 (397)
127 KOG0646 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 135.4 17.1 185 2-189 125-336 (476)
128 KOG1007 WD repeat protein TSSC 99.9 2.5E-21 5.4E-26 127.5 17.2 192 1-194 124-352 (370)
129 KOG0301 Phospholipase A2-activ 99.9 1.6E-21 3.4E-26 141.2 17.6 175 2-193 103-280 (745)
130 KOG0270 WD40 repeat-containing 99.9 1.1E-21 2.5E-26 135.3 15.8 182 2-188 245-434 (463)
131 KOG1539 WD repeat protein [Gen 99.9 1.7E-21 3.7E-26 143.6 17.7 185 2-192 450-637 (910)
132 KOG1408 WD40 repeat protein [F 99.9 6.7E-22 1.5E-26 144.3 15.1 183 2-191 461-702 (1080)
133 KOG1034 Transcriptional repres 99.9 2.2E-21 4.8E-26 129.7 16.2 183 4-191 93-372 (385)
134 KOG0300 WD40 repeat-containing 99.9 5.8E-22 1.2E-26 132.4 12.9 184 1-191 149-375 (481)
135 KOG1009 Chromatin assembly com 99.9 4.7E-22 1E-26 135.9 12.7 192 1-192 14-250 (434)
136 KOG0321 WD40 repeat-containing 99.9 2.4E-21 5.1E-26 139.3 15.5 188 1-191 101-336 (720)
137 KOG2445 Nuclear pore complex c 99.9 2E-20 4.3E-25 124.2 18.4 189 2-191 15-246 (361)
138 KOG0307 Vesicle coat complex C 99.9 2.1E-22 4.5E-27 152.5 10.3 186 4-190 68-272 (1049)
139 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-20 2.7E-25 132.5 18.0 178 1-184 122-305 (673)
140 KOG0293 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 132.9 13.8 149 40-190 217-372 (519)
141 KOG1009 Chromatin assembly com 99.9 3.2E-21 6.9E-26 131.9 13.3 118 2-119 67-195 (434)
142 KOG2106 Uncharacterized conser 99.9 3.4E-20 7.4E-25 130.4 18.7 181 2-193 248-468 (626)
143 KOG0642 Cell-cycle nuclear pro 99.9 5.3E-21 1.2E-25 135.6 14.7 189 2-192 296-551 (577)
144 KOG0268 Sof1-like rRNA process 99.9 7.4E-22 1.6E-26 133.5 9.9 155 1-161 188-348 (433)
145 KOG2106 Uncharacterized conser 99.9 5.3E-20 1.1E-24 129.4 19.3 187 1-192 288-511 (626)
146 KOG1007 WD repeat protein TSSC 99.9 1.5E-20 3.2E-25 123.9 15.2 187 1-190 64-276 (370)
147 KOG4378 Nuclear protein COP1 [ 99.9 6.5E-21 1.4E-25 133.9 14.2 179 5-191 84-269 (673)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.7E-19 1.2E-23 123.3 23.2 179 3-191 75-267 (300)
149 KOG2048 WD40 repeat protein [G 99.9 2.9E-19 6.2E-24 129.3 21.6 183 1-187 26-219 (691)
150 KOG1407 WD40 repeat protein [F 99.9 1.2E-19 2.6E-24 118.0 16.2 142 3-149 150-293 (313)
151 KOG1273 WD40 repeat protein [G 99.9 4.1E-20 8.9E-25 123.2 14.3 141 50-191 26-215 (405)
152 KOG1523 Actin-related protein 99.9 7.4E-20 1.6E-24 122.0 15.5 190 1-192 11-226 (361)
153 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-18 3.4E-23 121.1 21.9 170 12-191 1-175 (300)
154 KOG1539 WD repeat protein [Gen 99.9 3.6E-20 7.8E-25 136.8 14.0 153 1-159 494-649 (910)
155 KOG4328 WD40 protein [Function 99.8 3.8E-20 8.1E-25 128.5 13.2 188 1-191 235-439 (498)
156 KOG0307 Vesicle coat complex C 99.8 1.9E-20 4.1E-25 142.1 12.6 186 1-191 117-315 (1049)
157 KOG1310 WD40 repeat protein [G 99.8 6.7E-20 1.5E-24 130.3 12.9 189 1-193 51-294 (758)
158 PF08662 eIF2A: Eukaryotic tra 99.8 1.6E-18 3.4E-23 113.2 18.1 149 5-159 10-180 (194)
159 KOG2048 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 125.9 19.2 181 2-190 71-263 (691)
160 KOG0301 Phospholipase A2-activ 99.8 4.1E-19 8.9E-24 128.9 16.5 144 2-158 142-288 (745)
161 KOG0290 Conserved WD40 repeat- 99.8 2.8E-19 6E-24 118.1 14.2 186 2-190 98-306 (364)
162 KOG0303 Actin-binding protein 99.8 6.2E-19 1.3E-23 120.7 15.8 150 41-191 75-235 (472)
163 KOG1063 RNA polymerase II elon 99.8 8.6E-19 1.9E-23 127.3 17.1 177 2-183 527-734 (764)
164 KOG2055 WD40 repeat protein [G 99.8 6.5E-19 1.4E-23 122.6 15.5 182 3-192 306-502 (514)
165 KOG4227 WD40 repeat protein [G 99.8 3E-19 6.6E-24 122.6 13.6 189 1-189 57-261 (609)
166 KOG1538 Uncharacterized conser 99.8 2.1E-19 4.5E-24 130.7 12.9 173 2-184 14-188 (1081)
167 KOG0650 WD40 repeat nucleolar 99.8 7.3E-19 1.6E-23 126.0 12.9 190 1-192 401-670 (733)
168 KOG0649 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 107.4 17.6 175 1-182 63-256 (325)
169 KOG1445 Tumor-specific antigen 99.8 1E-18 2.2E-23 126.5 13.4 193 1-193 80-283 (1012)
170 KOG0321 WD40 repeat-containing 99.8 2.3E-18 5E-23 124.2 14.7 185 6-190 55-289 (720)
171 KOG1272 WD40-repeat-containing 99.8 1.9E-19 4E-24 125.5 8.6 183 2-191 211-398 (545)
172 PRK01742 tolB translocation pr 99.8 1.7E-17 3.6E-22 121.3 19.1 179 2-192 205-391 (429)
173 COG2319 FOG: WD40 repeat [Gene 99.8 9.1E-17 2E-21 116.5 22.8 182 3-190 112-302 (466)
174 KOG2110 Uncharacterized conser 99.8 2.9E-17 6.2E-22 111.6 18.2 153 2-159 89-249 (391)
175 KOG0290 Conserved WD40 repeat- 99.8 7.8E-18 1.7E-22 111.3 15.0 188 2-191 152-355 (364)
176 KOG1063 RNA polymerase II elon 99.8 3.1E-18 6.7E-23 124.5 14.3 191 1-192 362-638 (764)
177 KOG1034 Transcriptional repres 99.8 1.1E-17 2.5E-22 112.1 15.4 157 2-159 40-212 (385)
178 PRK11028 6-phosphogluconolacto 99.8 1.3E-16 2.8E-21 113.2 21.5 188 3-192 82-293 (330)
179 KOG1524 WD40 repeat-containing 99.8 1E-17 2.2E-22 119.1 14.9 168 2-191 106-275 (737)
180 KOG2139 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 111.3 16.7 181 3-192 101-300 (445)
181 KOG2919 Guanine nucleotide-bin 99.8 5.8E-17 1.2E-21 108.7 16.9 186 4-192 53-270 (406)
182 PRK11028 6-phosphogluconolacto 99.8 4.1E-16 9E-21 110.6 22.6 186 3-192 37-247 (330)
183 KOG2394 WD40 protein DMR-N9 [G 99.8 1.6E-17 3.5E-22 117.9 14.9 170 10-182 183-384 (636)
184 KOG0649 WD40 repeat protein [G 99.8 3.8E-16 8.2E-21 101.2 19.7 150 2-159 116-275 (325)
185 KOG0644 Uncharacterized conser 99.8 1E-18 2.2E-23 129.6 8.6 110 1-119 191-300 (1113)
186 KOG1587 Cytoplasmic dynein int 99.8 6.7E-17 1.4E-21 118.9 17.6 190 1-192 243-506 (555)
187 KOG1188 WD40 repeat protein [G 99.8 7E-17 1.5E-21 108.8 16.1 167 13-184 41-223 (376)
188 KOG2139 WD40 repeat protein [G 99.8 2.2E-16 4.7E-21 107.4 18.6 189 2-193 142-366 (445)
189 PRK02889 tolB translocation pr 99.8 3E-16 6.5E-21 114.6 20.4 180 2-192 197-390 (427)
190 PF08662 eIF2A: Eukaryotic tra 99.8 1.8E-16 3.9E-21 103.6 17.2 137 51-192 9-163 (194)
191 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-15 2.9E-20 110.4 23.7 183 2-190 157-346 (466)
192 KOG2096 WD40 repeat protein [G 99.8 8.2E-17 1.8E-21 107.9 15.7 152 40-192 79-298 (420)
193 KOG2394 WD40 protein DMR-N9 [G 99.8 6.4E-18 1.4E-22 119.9 10.2 94 1-99 291-384 (636)
194 PRK03629 tolB translocation pr 99.8 1.4E-15 2.9E-20 111.2 22.1 180 2-192 200-393 (429)
195 KOG2445 Nuclear pore complex c 99.8 5.4E-16 1.2E-20 103.4 18.0 189 1-190 60-306 (361)
196 PRK05137 tolB translocation pr 99.8 1E-15 2.2E-20 112.3 21.5 179 2-191 203-395 (435)
197 PRK04922 tolB translocation pr 99.8 1.2E-15 2.5E-20 111.9 21.1 180 2-192 205-398 (433)
198 KOG1524 WD40 repeat-containing 99.8 6E-17 1.3E-21 115.3 13.6 168 13-192 76-246 (737)
199 PRK01742 tolB translocation pr 99.7 2E-16 4.4E-21 115.6 15.9 171 3-183 250-426 (429)
200 KOG1523 Actin-related protein 99.7 9.6E-17 2.1E-21 107.4 12.8 147 46-192 9-166 (361)
201 KOG1538 Uncharacterized conser 99.7 1.6E-15 3.4E-20 111.0 19.5 188 1-192 54-283 (1081)
202 KOG0642 Cell-cycle nuclear pro 99.7 3.1E-16 6.6E-21 111.8 14.4 161 1-161 345-564 (577)
203 KOG0322 G-protein beta subunit 99.7 3E-16 6.5E-21 102.6 11.8 156 2-157 152-322 (323)
204 KOG1517 Guanine nucleotide bin 99.7 5.8E-16 1.3E-20 117.9 14.6 183 6-193 1171-1372(1387)
205 KOG1963 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 111.2 18.4 177 7-192 23-312 (792)
206 KOG2110 Uncharacterized conser 99.7 3.4E-14 7.4E-19 96.9 20.2 161 23-192 69-238 (391)
207 KOG1963 WD40 repeat protein [G 99.7 6.7E-15 1.5E-19 109.8 18.3 184 3-190 208-416 (792)
208 KOG1188 WD40 repeat protein [G 99.7 4.8E-16 1E-20 104.9 11.1 132 60-191 41-185 (376)
209 TIGR02800 propeller_TolB tol-p 99.7 2.6E-14 5.5E-19 104.6 21.2 180 2-192 191-384 (417)
210 KOG2111 Uncharacterized conser 99.7 4.3E-14 9.4E-19 94.8 20.0 154 2-160 96-258 (346)
211 PRK00178 tolB translocation pr 99.7 7.6E-14 1.7E-18 102.5 22.3 180 2-192 200-393 (430)
212 KOG1408 WD40 repeat protein [F 99.7 3.2E-15 6.9E-20 110.0 14.6 156 2-158 549-713 (1080)
213 KOG0771 Prolactin regulatory e 99.7 9E-16 1.9E-20 105.9 10.8 140 51-192 148-301 (398)
214 KOG3881 Uncharacterized conser 99.7 5.5E-15 1.2E-19 101.4 14.4 176 4-183 152-342 (412)
215 KOG1240 Protein kinase contain 99.7 1.6E-14 3.6E-19 111.5 18.2 183 2-185 1050-1251(1431)
216 KOG0650 WD40 repeat nucleolar 99.7 5.9E-15 1.3E-19 106.4 14.2 185 2-192 523-725 (733)
217 KOG2111 Uncharacterized conser 99.7 1.5E-13 3.2E-18 92.3 18.9 181 3-192 8-246 (346)
218 PRK03629 tolB translocation pr 99.6 5.2E-14 1.1E-18 103.0 17.8 171 3-183 245-428 (429)
219 KOG1310 WD40 repeat protein [G 99.6 4.7E-15 1E-19 106.2 11.8 151 40-190 43-219 (758)
220 PRK04792 tolB translocation pr 99.6 2.4E-13 5.1E-18 100.0 21.0 180 2-192 219-412 (448)
221 PRK05137 tolB translocation pr 99.6 2.6E-13 5.6E-18 99.7 21.0 159 23-191 183-352 (435)
222 KOG1517 Guanine nucleotide bin 99.6 7.4E-14 1.6E-18 106.8 17.0 191 2-192 1111-1324(1387)
223 KOG1272 WD40-repeat-containing 99.6 7.8E-15 1.7E-19 102.8 10.8 178 4-184 133-346 (545)
224 KOG0322 G-protein beta subunit 99.6 2.8E-15 6E-20 98.2 7.7 116 2-118 207-322 (323)
225 KOG0280 Uncharacterized conser 99.6 9.5E-14 2.1E-18 92.3 14.2 181 3-185 72-266 (339)
226 PF02239 Cytochrom_D1: Cytochr 99.6 1.9E-12 4.1E-17 92.6 21.4 173 13-192 6-191 (369)
227 KOG0280 Uncharacterized conser 99.6 1.7E-13 3.7E-18 91.1 14.3 184 4-191 125-320 (339)
228 KOG2321 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 98.8 14.9 179 5-192 138-333 (703)
229 PRK04922 tolB translocation pr 99.6 5.5E-13 1.2E-17 97.9 18.2 169 4-182 251-432 (433)
230 PRK02889 tolB translocation pr 99.6 2.8E-13 6E-18 99.2 16.5 173 3-183 242-425 (427)
231 KOG4497 Uncharacterized conser 99.6 2.5E-13 5.4E-18 91.9 14.3 178 5-192 13-230 (447)
232 KOG1587 Cytoplasmic dynein int 99.6 1.3E-13 2.8E-18 101.8 13.8 158 2-159 349-517 (555)
233 PRK01029 tolB translocation pr 99.6 1.5E-12 3.2E-17 95.2 19.2 180 3-191 187-389 (428)
234 KOG4547 WD40 repeat-containing 99.6 2.4E-12 5.2E-17 92.8 19.2 176 10-191 3-208 (541)
235 KOG2321 WD40 repeat protein [G 99.6 9.5E-13 2.1E-17 94.9 17.1 180 3-183 54-282 (703)
236 KOG4227 WD40 repeat protein [G 99.6 3.8E-13 8.2E-18 93.1 14.2 150 40-189 49-211 (609)
237 PRK04043 tolB translocation pr 99.5 1.4E-11 2.9E-16 89.8 22.2 178 3-191 190-386 (419)
238 KOG0974 WD-repeat protein WDR6 99.5 2E-13 4.3E-18 103.8 12.8 146 7-160 140-290 (967)
239 KOG3881 Uncharacterized conser 99.5 1.4E-13 3.1E-18 94.6 10.7 132 3-138 205-341 (412)
240 PF10282 Lactonase: Lactonase, 99.5 6.8E-11 1.5E-15 84.5 24.8 189 4-192 90-311 (345)
241 KOG4497 Uncharacterized conser 99.5 6.6E-12 1.4E-16 85.2 16.5 100 90-192 319-422 (447)
242 PRK01029 tolB translocation pr 99.5 1.7E-11 3.6E-16 89.8 19.8 175 4-184 234-426 (428)
243 TIGR02800 propeller_TolB tol-p 99.5 1.5E-11 3.3E-16 90.1 19.8 160 23-192 171-341 (417)
244 KOG1354 Serine/threonine prote 99.5 9E-13 2E-17 89.7 11.6 187 2-189 27-289 (433)
245 KOG0644 Uncharacterized conser 99.5 4.6E-14 9.9E-19 105.5 5.0 145 41-191 184-335 (1113)
246 KOG1334 WD40 repeat protein [G 99.5 8E-13 1.7E-17 93.5 10.8 187 1-191 143-355 (559)
247 PF10282 Lactonase: Lactonase, 99.5 3.5E-10 7.7E-15 80.8 24.5 189 3-192 39-264 (345)
248 KOG3914 WD repeat protein WDR4 99.5 4.8E-12 1E-16 87.5 13.1 156 4-163 66-228 (390)
249 COG2706 3-carboxymuconate cycl 99.4 5.6E-10 1.2E-14 76.7 22.6 190 3-193 42-264 (346)
250 PRK00178 tolB translocation pr 99.4 9.5E-11 2.1E-15 86.3 20.7 159 23-191 180-349 (430)
251 KOG1064 RAVE (regulator of V-A 99.4 6E-13 1.3E-17 106.6 9.1 149 2-161 2210-2401(2439)
252 PRK04792 tolB translocation pr 99.4 1.1E-10 2.4E-15 86.0 20.2 159 23-191 199-368 (448)
253 KOG0974 WD-repeat protein WDR6 99.4 3.1E-11 6.6E-16 92.3 17.5 175 10-191 97-277 (967)
254 KOG3914 WD repeat protein WDR4 99.4 4.8E-12 1E-16 87.5 11.9 90 40-130 144-234 (390)
255 KOG1354 Serine/threonine prote 99.4 7.7E-12 1.7E-16 85.2 10.8 156 3-160 167-361 (433)
256 KOG1240 Protein kinase contain 99.4 1.1E-11 2.4E-16 96.4 12.9 153 40-192 1041-1215(1431)
257 KOG2695 WD40 repeat protein [G 99.4 4.3E-12 9.3E-17 86.5 9.4 139 16-162 228-380 (425)
258 COG2706 3-carboxymuconate cycl 99.4 1.9E-09 4E-14 74.2 22.0 187 4-192 92-310 (346)
259 PF02239 Cytochrom_D1: Cytochr 99.4 1.9E-10 4.1E-15 82.5 18.2 129 62-191 9-146 (369)
260 KOG4532 WD40-like repeat conta 99.4 1.4E-10 3.1E-15 76.8 15.8 168 13-184 85-262 (344)
261 COG4946 Uncharacterized protei 99.3 1.2E-09 2.7E-14 77.8 18.8 167 11-189 331-505 (668)
262 KOG4547 WD40 repeat-containing 99.3 2.1E-10 4.5E-15 83.0 15.2 144 11-159 69-221 (541)
263 KOG2041 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 84.9 15.9 187 2-191 16-277 (1189)
264 KOG2315 Predicted translation 99.3 2.7E-09 5.9E-14 77.1 19.7 182 2-191 167-373 (566)
265 KOG4190 Uncharacterized conser 99.3 1.8E-11 4E-16 88.7 8.6 156 4-161 739-909 (1034)
266 KOG2315 Predicted translation 99.3 2E-10 4.3E-15 82.8 12.4 113 1-124 271-394 (566)
267 KOG2695 WD40 repeat protein [G 99.3 2.5E-11 5.4E-16 82.8 7.2 129 2-131 254-388 (425)
268 PF04762 IKI3: IKI3 family; I 99.2 3.1E-09 6.8E-14 84.2 19.1 182 2-191 77-323 (928)
269 PLN02919 haloacid dehalogenase 99.2 5.9E-09 1.3E-13 83.9 20.5 158 4-161 686-891 (1057)
270 COG4946 Uncharacterized protei 99.2 2.2E-09 4.7E-14 76.6 15.4 138 4-147 363-507 (668)
271 PF00400 WD40: WD domain, G-be 99.2 5.9E-11 1.3E-15 56.9 5.5 38 80-117 2-39 (39)
272 KOG2066 Vacuolar assembly/sort 99.2 8.3E-10 1.8E-14 82.9 13.9 143 2-162 41-191 (846)
273 COG5170 CDC55 Serine/threonine 99.2 3.2E-10 6.9E-15 76.8 9.8 188 1-189 27-297 (460)
274 TIGR02658 TTQ_MADH_Hv methylam 99.2 5.4E-08 1.2E-12 68.9 21.3 181 7-191 52-318 (352)
275 KOG1409 Uncharacterized conser 99.2 2.4E-09 5.2E-14 73.3 13.9 159 2-161 70-273 (404)
276 KOG1334 WD40 repeat protein [G 99.2 1.9E-10 4.2E-15 81.7 8.7 186 1-190 233-454 (559)
277 KOG1409 Uncharacterized conser 99.2 5.1E-09 1.1E-13 71.8 14.6 186 2-192 26-217 (404)
278 PLN02919 haloacid dehalogenase 99.2 8.9E-08 1.9E-12 77.4 23.6 186 3-190 626-876 (1057)
279 PF04762 IKI3: IKI3 family; I 99.1 2.9E-08 6.2E-13 78.9 20.1 180 1-184 121-360 (928)
280 PF15492 Nbas_N: Neuroblastoma 99.1 6.9E-08 1.5E-12 64.8 18.8 159 4-162 47-263 (282)
281 KOG4714 Nucleoporin [Nuclear s 99.1 3.9E-10 8.4E-15 74.4 8.0 108 49-156 181-316 (319)
282 KOG4532 WD40-like repeat conta 99.1 3.7E-08 8E-13 65.6 16.6 169 14-189 130-319 (344)
283 KOG1275 PAB-dependent poly(A) 99.1 4.4E-09 9.6E-14 80.3 13.6 172 12-192 147-332 (1118)
284 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 69.8 20.0 137 49-191 189-337 (419)
285 PF08450 SGL: SMP-30/Gluconola 99.1 8.4E-07 1.8E-11 60.6 22.7 182 3-191 42-244 (246)
286 KOG4190 Uncharacterized conser 99.0 5.5E-10 1.2E-14 81.2 6.5 148 42-191 730-895 (1034)
287 COG5170 CDC55 Serine/threonine 99.0 7.6E-09 1.7E-13 70.3 11.3 188 2-191 87-356 (460)
288 COG5354 Uncharacterized protei 99.0 1.5E-07 3.1E-12 67.9 17.1 180 2-191 175-378 (561)
289 KOG0309 Conserved WD40 repeat- 99.0 5.5E-09 1.2E-13 78.3 10.4 183 3-188 70-261 (1081)
290 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3.1E-14 51.9 5.0 36 40-75 4-39 (39)
291 TIGR02658 TTQ_MADH_Hv methylam 99.0 7.4E-07 1.6E-11 63.3 20.0 103 22-131 27-148 (352)
292 KOG2314 Translation initiation 99.0 6E-08 1.3E-12 70.6 13.6 137 47-189 210-363 (698)
293 PF08450 SGL: SMP-30/Gluconola 99.0 2.7E-06 5.9E-11 58.1 22.5 175 5-190 4-201 (246)
294 KOG4714 Nucleoporin [Nuclear s 98.9 8.5E-09 1.8E-13 68.2 7.9 144 12-159 101-255 (319)
295 PF11768 DUF3312: Protein of u 98.9 1.6E-08 3.5E-13 74.0 10.0 71 2-79 261-331 (545)
296 KOG2314 Translation initiation 98.9 1.9E-07 4E-12 68.2 15.2 184 2-192 348-557 (698)
297 KOG1920 IkappaB kinase complex 98.9 3.3E-07 7.2E-12 72.4 17.6 181 2-189 70-306 (1265)
298 COG5354 Uncharacterized protei 98.9 2.6E-07 5.7E-12 66.6 15.7 167 5-190 227-417 (561)
299 KOG1912 WD40 repeat protein [G 98.9 1.1E-07 2.3E-12 72.0 14.1 147 4-157 19-185 (1062)
300 KOG1008 Uncharacterized conser 98.9 3.4E-10 7.4E-15 83.2 0.9 183 3-189 59-260 (783)
301 KOG2041 WD40 repeat protein [G 98.9 1.3E-08 2.8E-13 76.3 8.7 143 45-190 12-174 (1189)
302 KOG2066 Vacuolar assembly/sort 98.9 7.7E-07 1.7E-11 67.6 17.5 136 11-158 82-233 (846)
303 PF11768 DUF3312: Protein of u 98.9 3.7E-08 7.9E-13 72.1 10.3 78 42-121 254-331 (545)
304 PF07433 DUF1513: Protein of u 98.9 4.5E-06 9.7E-11 57.7 19.7 184 3-191 7-235 (305)
305 PF06977 SdiA-regulated: SdiA- 98.9 5.8E-06 1.3E-10 56.1 20.0 184 2-190 23-239 (248)
306 PF13360 PQQ_2: PQQ-like domai 98.8 2.9E-06 6.3E-11 57.6 18.5 149 12-164 76-236 (238)
307 KOG0309 Conserved WD40 repeat- 98.8 5.2E-08 1.1E-12 73.3 9.7 173 2-181 26-210 (1081)
308 KOG1832 HIV-1 Vpr-binding prot 98.8 9.8E-09 2.1E-13 78.7 5.0 146 42-188 1096-1246(1516)
309 KOG3617 WD40 and TPR repeat-co 98.8 2.2E-07 4.7E-12 71.3 11.3 108 5-119 20-131 (1416)
310 PF07433 DUF1513: Protein of u 98.7 2E-05 4.4E-10 54.5 20.1 169 6-184 56-269 (305)
311 COG3391 Uncharacterized conser 98.7 2.5E-05 5.4E-10 56.9 20.5 179 4-190 77-270 (381)
312 KOG1275 PAB-dependent poly(A) 98.7 2.8E-07 6.1E-12 70.9 10.5 140 10-157 185-341 (1118)
313 KOG1832 HIV-1 Vpr-binding prot 98.7 2.6E-08 5.6E-13 76.5 5.0 173 3-192 1104-1286(1516)
314 TIGR03300 assembly_YfgL outer 98.7 3.1E-06 6.7E-11 61.6 15.4 133 12-155 241-376 (377)
315 KOG2114 Vacuolar assembly/sort 98.7 4E-06 8.7E-11 64.4 15.9 177 7-190 30-232 (933)
316 KOG1645 RING-finger-containing 98.7 1E-06 2.2E-11 62.0 11.8 80 42-122 188-269 (463)
317 COG0823 TolB Periplasmic compo 98.7 3.2E-06 6.9E-11 62.0 14.9 178 3-190 195-387 (425)
318 PF15492 Nbas_N: Neuroblastoma 98.7 2.9E-05 6.3E-10 52.6 21.7 141 6-148 3-167 (282)
319 PF04053 Coatomer_WDAD: Coatom 98.7 8.4E-06 1.8E-10 60.1 17.0 162 3-183 35-207 (443)
320 PRK02888 nitrous-oxide reducta 98.6 8.1E-06 1.8E-10 61.6 16.7 92 68-159 295-405 (635)
321 KOG1912 WD40 repeat protein [G 98.6 1.4E-05 3.1E-10 61.1 17.6 184 2-192 57-293 (1062)
322 KOG3621 WD40 repeat-containing 98.6 1E-06 2.2E-11 66.1 11.6 110 7-120 40-155 (726)
323 KOG1064 RAVE (regulator of V-A 98.6 4.5E-07 9.7E-12 74.5 9.9 145 46-192 2207-2356(2439)
324 KOG4640 Anaphase-promoting com 98.6 3.7E-07 8E-12 67.5 8.5 91 3-99 23-115 (665)
325 PF13360 PQQ_2: PQQ-like domai 98.6 4E-05 8.6E-10 52.0 17.4 147 11-164 35-197 (238)
326 KOG1920 IkappaB kinase complex 98.6 3E-05 6.4E-10 61.9 18.3 160 1-161 110-325 (1265)
327 TIGR03300 assembly_YfgL outer 98.6 2.7E-05 6E-10 56.7 17.2 144 11-164 64-214 (377)
328 KOG1645 RING-finger-containing 98.5 5.6E-07 1.2E-11 63.3 6.9 95 71-165 175-273 (463)
329 PF08553 VID27: VID27 cytoplas 98.5 9E-06 2E-10 63.3 13.7 132 58-192 492-638 (794)
330 KOG3617 WD40 and TPR repeat-co 98.5 6.7E-06 1.5E-10 63.5 12.6 70 3-77 62-131 (1416)
331 PF04053 Coatomer_WDAD: Coatom 98.5 5.4E-05 1.2E-09 55.9 16.7 134 45-191 30-163 (443)
332 KOG1008 Uncharacterized conser 98.5 4.5E-08 9.8E-13 72.4 0.7 156 2-159 104-276 (783)
333 COG0823 TolB Periplasmic compo 98.4 2.5E-05 5.4E-10 57.4 14.1 144 44-191 189-344 (425)
334 KOG4640 Anaphase-promoting com 98.4 2.8E-06 6E-11 63.1 8.7 79 47-126 20-99 (665)
335 smart00320 WD40 WD40 repeats. 98.4 2E-06 4.2E-11 40.1 5.1 38 80-117 3-40 (40)
336 PF00930 DPPIV_N: Dipeptidyl p 98.3 2.4E-05 5.2E-10 56.4 11.6 167 9-189 1-200 (353)
337 KOG0882 Cyclophilin-related pe 98.3 3.6E-05 7.7E-10 55.4 11.8 153 3-161 56-234 (558)
338 PF08596 Lgl_C: Lethal giant l 98.3 0.00063 1.4E-08 49.7 18.8 189 1-190 87-324 (395)
339 KOG0882 Cyclophilin-related pe 98.3 8.9E-06 1.9E-10 58.3 8.6 176 11-189 19-218 (558)
340 PRK13616 lipoprotein LpqB; Pro 98.2 0.00032 7E-09 53.9 16.6 169 3-183 352-551 (591)
341 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00024 5.1E-09 41.6 13.1 100 3-114 2-109 (111)
342 PF03178 CPSF_A: CPSF A subuni 98.2 0.00083 1.8E-08 47.9 17.5 142 12-158 42-202 (321)
343 PRK11138 outer membrane biogen 98.2 0.00031 6.7E-09 51.6 15.5 135 12-157 256-393 (394)
344 cd00216 PQQ_DH Dehydrogenases 98.2 0.0014 2.9E-08 49.6 20.3 125 61-191 303-456 (488)
345 PRK02888 nitrous-oxide reducta 98.2 0.00084 1.8E-08 51.2 17.2 133 55-188 200-390 (635)
346 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.0003 6.6E-09 41.2 14.2 100 50-153 2-109 (111)
347 PF00780 CNH: CNH domain; Int 98.1 0.00098 2.1E-08 46.4 19.5 143 10-161 5-168 (275)
348 PRK11138 outer membrane biogen 98.1 0.00068 1.5E-08 49.8 16.3 146 14-165 207-360 (394)
349 PRK13616 lipoprotein LpqB; Pro 98.1 0.00073 1.6E-08 52.0 16.5 137 48-188 350-512 (591)
350 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0012 2.7E-08 44.7 14.7 105 59-165 23-130 (354)
351 KOG3621 WD40 repeat-containing 98.1 5.5E-05 1.2E-09 57.2 9.4 113 47-159 33-155 (726)
352 PF08553 VID27: VID27 cytoplas 98.1 0.00011 2.4E-09 57.5 11.3 104 13-118 543-646 (794)
353 KOG2079 Vacuolar assembly/sort 98.0 3.9E-05 8.5E-10 60.7 8.5 98 11-112 98-198 (1206)
354 KOG2114 Vacuolar assembly/sort 98.0 0.002 4.4E-08 50.3 17.0 126 2-129 127-253 (933)
355 PF00780 CNH: CNH domain; Int 98.0 0.00076 1.7E-08 46.9 14.0 127 57-190 5-154 (275)
356 KOG2395 Protein involved in va 98.0 0.00012 2.6E-09 54.0 9.9 134 55-192 341-491 (644)
357 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0018 3.8E-08 43.9 16.0 134 12-152 23-159 (354)
358 smart00320 WD40 WD40 repeats. 98.0 1.7E-05 3.7E-10 36.6 3.9 33 43-75 8-40 (40)
359 KOG2444 WD40 repeat protein [G 97.9 7.8E-05 1.7E-09 49.1 7.4 105 12-120 70-178 (238)
360 PF12894 Apc4_WD40: Anaphase-p 97.9 5.1E-05 1.1E-09 37.3 4.8 30 2-31 13-42 (47)
361 cd00216 PQQ_DH Dehydrogenases 97.8 0.0073 1.6E-07 45.8 17.9 155 12-167 61-273 (488)
362 PF03178 CPSF_A: CPSF A subuni 97.8 0.0051 1.1E-07 44.0 18.3 119 69-190 62-190 (321)
363 COG3490 Uncharacterized protei 97.8 0.0032 6.9E-08 43.3 13.3 140 4-148 71-245 (366)
364 PF15390 DUF4613: Domain of un 97.8 0.0029 6.2E-08 47.7 13.8 138 45-191 17-174 (671)
365 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0083 1.8E-07 44.4 17.1 170 6-190 34-234 (410)
366 KOG2079 Vacuolar assembly/sort 97.7 0.00048 1E-08 54.9 9.8 94 58-151 98-198 (1206)
367 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00018 4E-09 35.4 5.0 34 47-81 11-44 (47)
368 COG3391 Uncharacterized conser 97.7 0.011 2.3E-07 43.4 20.6 144 48-192 74-226 (381)
369 PF04841 Vps16_N: Vps16, N-ter 97.7 0.012 2.7E-07 43.5 18.2 177 1-184 81-271 (410)
370 PF08596 Lgl_C: Lethal giant l 97.6 0.013 2.8E-07 43.1 20.2 117 2-119 3-173 (395)
371 PF06977 SdiA-regulated: SdiA- 97.6 0.0087 1.9E-07 41.0 17.6 150 4-155 68-247 (248)
372 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.014 3.1E-07 42.3 19.5 143 46-192 182-347 (353)
373 PF06433 Me-amine-dh_H: Methyl 97.6 0.014 3.1E-07 41.5 14.6 132 22-160 17-167 (342)
374 PF14870 PSII_BNR: Photosynthe 97.5 0.016 3.4E-07 40.9 18.6 145 45-193 142-296 (302)
375 COG3490 Uncharacterized protei 97.5 0.017 3.6E-07 40.0 14.8 152 7-162 120-314 (366)
376 PF10647 Gmad1: Lipoprotein Lp 97.4 0.013 2.9E-07 40.3 12.8 101 91-191 25-130 (253)
377 COG3204 Uncharacterized protei 97.4 0.021 4.5E-07 39.6 18.8 184 3-190 88-301 (316)
378 COG3386 Gluconolactonase [Carb 97.3 0.011 2.5E-07 41.8 11.7 104 4-108 166-274 (307)
379 PF05694 SBP56: 56kDa selenium 97.3 0.035 7.5E-07 40.9 18.7 188 5-194 134-395 (461)
380 PF02897 Peptidase_S9_N: Proly 97.3 0.04 8.6E-07 40.9 20.7 152 4-161 127-312 (414)
381 KOG2395 Protein involved in va 97.3 0.0047 1E-07 46.0 9.2 115 3-119 378-500 (644)
382 PF15390 DUF4613: Domain of un 97.2 0.04 8.6E-07 42.0 13.7 119 2-120 58-187 (671)
383 KOG3630 Nuclear pore complex, 97.2 0.014 3E-07 47.6 11.5 144 47-190 100-261 (1405)
384 COG3386 Gluconolactonase [Carb 97.1 0.048 1E-06 38.7 19.4 141 48-191 111-274 (307)
385 PF05096 Glu_cyclase_2: Glutam 97.1 0.043 9.2E-07 37.8 15.7 114 48-162 45-161 (264)
386 PF14870 PSII_BNR: Photosynthe 97.1 0.028 6.1E-07 39.7 11.7 142 2-154 146-300 (302)
387 TIGR02604 Piru_Ver_Nterm putat 97.1 0.06 1.3E-06 39.4 14.7 137 48-189 14-200 (367)
388 COG5167 VID27 Protein involved 97.1 0.074 1.6E-06 40.0 14.9 135 54-192 474-623 (776)
389 PF06433 Me-amine-dh_H: Methyl 97.0 0.065 1.4E-06 38.3 17.7 150 13-162 148-324 (342)
390 PF10313 DUF2415: Uncharacteri 97.0 0.0073 1.6E-07 28.9 5.6 31 90-120 1-34 (43)
391 TIGR02604 Piru_Ver_Nterm putat 97.0 0.08 1.7E-06 38.7 15.0 141 3-147 16-202 (367)
392 COG5276 Uncharacterized conser 97.0 0.065 1.4E-06 37.4 17.2 139 50-190 89-231 (370)
393 PF12234 Rav1p_C: RAVE protein 97.0 0.046 1E-06 42.5 12.5 92 21-118 50-155 (631)
394 KOG4499 Ca2+-binding protein R 97.0 0.035 7.6E-07 37.4 10.3 96 4-99 161-263 (310)
395 PF12234 Rav1p_C: RAVE protein 96.9 0.13 2.9E-06 40.0 14.5 104 53-158 35-156 (631)
396 PF14583 Pectate_lyase22: Olig 96.9 0.098 2.1E-06 38.1 17.5 178 7-189 42-254 (386)
397 PHA02713 hypothetical protein; 96.9 0.034 7.4E-07 43.0 11.4 62 100-161 463-536 (557)
398 KOG2444 WD40 repeat protein [G 96.9 0.0098 2.1E-07 39.5 7.2 102 59-160 70-179 (238)
399 COG3204 Uncharacterized protei 96.8 0.089 1.9E-06 36.7 14.3 116 44-159 82-211 (316)
400 PF05096 Glu_cyclase_2: Glutam 96.8 0.085 1.8E-06 36.4 20.6 178 5-191 49-249 (264)
401 PF08728 CRT10: CRT10; InterP 96.7 0.037 8E-07 43.4 10.3 108 11-118 113-245 (717)
402 PF07995 GSDH: Glucose / Sorbo 96.7 0.14 3E-06 37.0 15.9 109 2-111 3-135 (331)
403 KOG3630 Nuclear pore complex, 96.7 0.033 7.1E-07 45.6 10.0 117 3-119 103-228 (1405)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.091 2E-06 38.9 11.2 94 5-99 6-118 (415)
405 PF10313 DUF2415: Uncharacteri 96.5 0.016 3.5E-07 27.7 4.8 31 1-31 1-34 (43)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.25 5.4E-06 38.1 21.5 82 111-193 441-524 (527)
407 PHA03098 kelch-like protein; P 96.4 0.3 6.4E-06 37.8 15.5 102 58-161 342-467 (534)
408 PF07569 Hira: TUP1-like enhan 96.4 0.043 9.4E-07 37.0 8.1 24 100-123 21-44 (219)
409 PF10647 Gmad1: Lipoprotein Lp 96.4 0.18 3.9E-06 34.9 15.5 142 2-151 25-188 (253)
410 PHA02713 hypothetical protein; 96.3 0.38 8.2E-06 37.5 15.7 100 58-159 351-489 (557)
411 KOG4499 Ca2+-binding protein R 96.3 0.19 4.1E-06 34.0 13.9 83 49-131 159-253 (310)
412 KOG1916 Nuclear protein, conta 96.3 0.0027 5.8E-08 50.2 2.1 95 22-117 153-263 (1283)
413 PF07569 Hira: TUP1-like enhan 96.1 0.13 2.9E-06 34.6 9.2 70 55-125 18-101 (219)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 0.2 4.2E-06 37.2 10.6 43 47-89 307-349 (415)
415 PRK10115 protease 2; Provision 96.0 0.59 1.3E-05 37.4 16.0 108 49-158 128-255 (686)
416 PHA03098 kelch-like protein; P 96.0 0.52 1.1E-05 36.4 14.4 144 11-161 342-514 (534)
417 KOG4441 Proteins containing BT 96.0 0.55 1.2E-05 36.7 15.8 145 11-161 332-502 (571)
418 PF10168 Nup88: Nuclear pore c 96.0 0.66 1.4E-05 37.2 14.4 73 48-121 85-181 (717)
419 PRK13684 Ycf48-like protein; P 95.9 0.41 9E-06 34.6 19.6 141 47-193 172-323 (334)
420 PF14583 Pectate_lyase22: Olig 95.7 0.53 1.1E-05 34.5 14.6 134 52-189 40-204 (386)
421 PF11715 Nup160: Nucleoporin N 95.6 0.16 3.4E-06 39.4 9.1 76 10-85 156-256 (547)
422 TIGR03074 PQQ_membr_DH membran 95.6 1 2.2E-05 36.6 13.8 109 59-167 194-353 (764)
423 PF14727 PHTB1_N: PTHB1 N-term 95.6 0.69 1.5E-05 34.5 15.3 145 12-157 37-203 (418)
424 PLN00033 photosystem II stabil 95.6 0.67 1.5E-05 34.4 16.4 137 50-193 241-391 (398)
425 PF11715 Nup160: Nucleoporin N 95.5 0.24 5.2E-06 38.4 9.8 73 57-129 156-258 (547)
426 KOG2377 Uncharacterized conser 95.5 0.73 1.6E-05 34.5 13.1 138 50-191 25-172 (657)
427 PF13449 Phytase-like: Esteras 95.5 0.62 1.3E-05 33.6 17.1 142 47-189 19-231 (326)
428 COG4590 ABC-type uncharacteriz 95.5 0.2 4.3E-06 37.3 8.5 158 2-161 222-389 (733)
429 PF14761 HPS3_N: Hermansky-Pud 95.5 0.44 9.5E-06 31.8 11.6 102 13-120 29-164 (215)
430 KOG1916 Nuclear protein, conta 95.3 0.033 7.2E-07 44.5 4.5 113 6-124 186-328 (1283)
431 KOG2377 Uncharacterized conser 95.2 0.91 2E-05 34.1 12.8 126 19-148 40-173 (657)
432 PRK10115 protease 2; Provision 95.2 1.3 2.8E-05 35.6 23.0 109 3-118 129-254 (686)
433 PF08728 CRT10: CRT10; InterP 95.2 1.3 2.8E-05 35.4 18.7 144 12-157 49-245 (717)
434 KOG4441 Proteins containing BT 95.2 1.2 2.6E-05 34.9 15.4 143 12-161 285-455 (571)
435 COG5167 VID27 Protein involved 95.0 0.34 7.3E-06 36.7 8.7 61 58-119 572-632 (776)
436 PF10168 Nup88: Nuclear pore c 95.0 1.5 3.3E-05 35.3 15.1 77 90-167 85-188 (717)
437 COG3823 Glutamine cyclotransfe 95.0 0.39 8.4E-06 32.0 7.9 103 58-160 55-160 (262)
438 PF10395 Utp8: Utp8 family; I 94.9 1.5 3.2E-05 34.7 15.6 153 1-158 130-305 (670)
439 PRK13684 Ycf48-like protein; P 94.9 1 2.2E-05 32.7 15.0 147 2-157 174-330 (334)
440 PF14761 HPS3_N: Hermansky-Pud 94.9 0.41 8.9E-06 32.0 7.9 52 137-189 24-76 (215)
441 PF12657 TFIIIC_delta: Transcr 94.9 0.62 1.4E-05 30.2 8.9 31 90-120 86-122 (173)
442 KOG1897 Damage-specific DNA bi 94.9 1.8 4E-05 35.6 17.4 186 2-190 532-732 (1096)
443 PF10214 Rrn6: RNA polymerase 94.7 1.9 4.2E-05 35.1 13.4 116 2-120 147-277 (765)
444 TIGR03606 non_repeat_PQQ dehyd 94.5 1.6 3.4E-05 33.1 13.5 108 3-110 32-166 (454)
445 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.5 1.8 3.9E-05 33.6 17.2 146 13-162 121-337 (527)
446 PF14781 BBS2_N: Ciliary BBSom 94.4 0.67 1.4E-05 28.5 13.0 118 4-124 2-130 (136)
447 TIGR02276 beta_rpt_yvtn 40-res 94.4 0.24 5.2E-06 23.2 5.3 40 57-97 1-41 (42)
448 KOG2247 WD40 repeat-containing 94.3 0.006 1.3E-07 45.1 -1.4 138 48-189 35-176 (615)
449 PHA02790 Kelch-like protein; P 94.0 2.1 4.6E-05 32.8 15.6 101 57-161 317-426 (480)
450 COG5276 Uncharacterized conser 94.0 1.5 3.2E-05 31.0 20.7 150 4-162 90-245 (370)
451 TIGR03606 non_repeat_PQQ dehyd 93.8 2.2 4.8E-05 32.4 13.8 102 88-189 28-162 (454)
452 COG4257 Vgb Streptogramin lyas 93.7 1.6 3.6E-05 30.5 14.5 173 4-189 65-249 (353)
453 KOG2247 WD40 repeat-containing 93.3 0.029 6.2E-07 41.8 0.4 106 4-115 78-184 (615)
454 PF05694 SBP56: 56kDa selenium 93.1 2.8 6.1E-05 31.5 16.7 179 12-191 87-330 (461)
455 PF14781 BBS2_N: Ciliary BBSom 93.1 1.2 2.7E-05 27.4 12.6 108 52-161 3-128 (136)
456 PF03022 MRJP: Major royal jel 93.0 2.3 5.1E-05 30.1 20.8 191 2-192 2-255 (287)
457 KOG1900 Nuclear pore complex, 93.0 4 8.7E-05 34.8 11.6 135 19-159 96-273 (1311)
458 COG4590 ABC-type uncharacteriz 93.0 2.3 5E-05 32.1 9.4 111 12-124 280-391 (733)
459 PF02897 Peptidase_S9_N: Proly 93.0 2.9 6.4E-05 31.2 24.1 182 6-192 175-390 (414)
460 COG1520 FOG: WD40-like repeat 92.9 2.8 6.1E-05 30.8 13.6 104 61-165 70-178 (370)
461 PHA02790 Kelch-like protein; P 92.7 3.6 7.7E-05 31.6 13.5 99 58-161 362-473 (480)
462 PF07995 GSDH: Glucose / Sorbo 92.4 3.1 6.8E-05 30.1 11.9 97 91-189 3-130 (331)
463 TIGR03074 PQQ_membr_DH membran 92.2 5.6 0.00012 32.5 18.3 153 12-164 260-483 (764)
464 PLN00033 photosystem II stabil 92.1 3.9 8.4E-05 30.6 16.6 140 6-155 244-396 (398)
465 PF01731 Arylesterase: Arylest 91.5 1.3 2.8E-05 25.0 5.4 49 111-159 36-85 (86)
466 PF13449 Phytase-like: Esteras 91.3 4.2 9.2E-05 29.4 17.8 106 2-108 21-165 (326)
467 KOG3616 Selective LIM binding 91.2 0.72 1.6E-05 36.9 5.6 67 89-157 14-82 (1636)
468 KOG3522 Predicted guanine nucl 91.2 5.9 0.00013 32.3 10.3 73 46-122 625-700 (925)
469 PF14727 PHTB1_N: PTHB1 N-term 90.9 5.5 0.00012 30.0 15.7 129 59-191 37-193 (418)
470 PF07676 PD40: WD40-like Beta 90.6 0.97 2.1E-05 20.8 5.4 22 88-109 7-28 (39)
471 PF07250 Glyoxal_oxid_N: Glyox 90.2 4.6 0.0001 27.9 8.9 108 52-161 71-200 (243)
472 smart00564 PQQ beta-propeller 90.0 0.96 2.1E-05 19.8 3.8 24 61-84 8-31 (33)
473 PF10214 Rrn6: RNA polymerase 89.3 11 0.00024 31.0 19.4 76 47-123 145-236 (765)
474 TIGR02276 beta_rpt_yvtn 40-res 89.1 1.4 3.1E-05 20.5 5.5 31 99-129 1-32 (42)
475 KOG4460 Nuclear pore complex, 89.1 9 0.0002 29.7 14.1 76 49-124 105-203 (741)
476 PF03088 Str_synth: Strictosid 88.9 2.6 5.6E-05 24.0 5.3 42 146-190 33-74 (89)
477 COG1520 FOG: WD40-like repeat 88.8 7.7 0.00017 28.6 15.8 146 13-163 69-222 (370)
478 PF12657 TFIIIC_delta: Transcr 88.8 4.8 0.0001 26.1 7.9 30 130-159 87-122 (173)
479 PF01011 PQQ: PQQ enzyme repea 88.1 1.7 3.6E-05 20.0 4.2 26 61-86 2-27 (38)
480 KOG4460 Nuclear pore complex, 88.0 11 0.00024 29.3 10.4 79 2-80 105-201 (741)
481 TIGR03548 mutarot_permut cycli 87.7 8.4 0.00018 27.7 16.7 65 58-123 123-198 (323)
482 KOG2280 Vacuolar assembly/sort 87.5 14 0.0003 30.0 15.1 175 6-189 38-233 (829)
483 PF12341 DUF3639: Protein of u 87.5 1.4 3.1E-05 18.7 3.5 26 1-28 2-27 (27)
484 PLN02153 epithiospecifier prot 87.4 9.2 0.0002 27.8 16.2 51 111-161 217-287 (341)
485 PF12768 Rax2: Cortical protei 87.3 8.4 0.00018 27.3 11.2 55 69-123 16-76 (281)
486 PF14779 BBS1: Ciliary BBSome 87.3 8 0.00017 27.0 7.8 67 89-155 176-255 (257)
487 PF13570 PQQ_3: PQQ-like domai 86.8 1.7 3.8E-05 20.2 3.3 19 140-158 21-39 (40)
488 KOG2006 WD40 repeat protein [G 86.8 1.8 3.9E-05 35.7 5.1 75 5-79 153-227 (1023)
489 TIGR02171 Fb_sc_TIGR02171 Fibr 86.8 14 0.00031 30.7 9.8 76 67-142 327-412 (912)
490 PF07250 Glyoxal_oxid_N: Glyox 86.7 8.4 0.00018 26.7 10.6 119 7-127 73-205 (243)
491 PF02333 Phytase: Phytase; In 86.3 12 0.00025 27.9 19.9 175 11-193 67-280 (381)
492 COG3823 Glutamine cyclotransfe 86.3 8.2 0.00018 26.1 11.8 54 66-122 108-161 (262)
493 TIGR03032 conserved hypothetic 86.2 11 0.00023 27.3 16.8 82 100-183 212-315 (335)
494 KOG0783 Uncharacterized conser 85.5 20 0.00043 29.8 10.9 42 141-182 399-440 (1267)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 85.1 13 0.00028 30.9 8.9 76 22-103 329-412 (912)
496 PRK13615 lipoprotein LpqB; Pro 85.1 17 0.00037 28.7 11.6 97 93-191 337-435 (557)
497 KOG1983 Tomosyn and related SN 84.8 21 0.00044 30.5 10.2 27 4-30 39-65 (993)
498 TIGR03118 PEPCTERM_chp_1 conse 84.5 13 0.00028 26.8 13.1 110 49-158 24-170 (336)
499 COG4257 Vgb Streptogramin lyas 84.3 12 0.00027 26.5 12.2 140 48-192 62-208 (353)
500 PF12768 Rax2: Cortical protei 83.6 13 0.00029 26.3 9.8 93 22-120 16-124 (281)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.4e-39 Score=217.93 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=167.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|..++|+|+|++|++++.|.+-++||+.++.. .....+|...|.+++|.|||..+++|+.|..-+|||++++.+
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchh-----hHhhcccccccceeEecCCCceeeccCccchhheeecccCcE
Confidence 477899999999999999999999999999853 556679999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEec-CCCEEEEEcCCCcEEEEEC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTV-RYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~dg~v~~~d~ 157 (194)
+..+.+|..+|.+++|+|+|..++||+.|++++|||+|....+..+..+. ..+.++| .|.+|++++.|+++++|..
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 99999999999999999999999999999999999999998888877664 5788998 7889999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++.+. . ....+|.+.|.++..+||++.+++++.
T Consensus 418 ~~~~~-~-ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 418 RTWSP-L-KSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred CCccc-c-hhhcCCccceEEEEeccCCceEEEecc
Confidence 88763 3 344679999999999999999998864
No 2
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-37 Score=224.14 Aligned_cols=186 Identities=20% Similarity=0.222 Sum_probs=170.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+.+.|+|+.++|+++++|+++|+|.+.+... .....+|..||..+.|+|.|-+|+|++.|++-++|......
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeeccccee-----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 5899999999999999999999999999998854 56667999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
+.+.+.+|...|.|++|+|+..|+++||.|.++++||+.++..++.+.++ ..+++++|+|++|++|++||.|.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999999999999999998887654 578999999999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
.+++. .. ...+|.+.+.++.|+.+|..|++|...
T Consensus 607 ~~~~~-v~-~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 607 ANGSL-VK-QLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred CCCcc-hh-hhhcccCceeEEEEecCCCEEEecCCC
Confidence 98764 23 234578999999999999999998753
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=210.74 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=165.4
Q ss_pred CeeeEEEcCC--CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPK--ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.|.++.|+|. +..+|+|+.||++++|+++... ....+.+|...|..++|+|+|++|+|++.|.+-++||++++
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-----~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-----PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCc-----chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 5789999996 5689999999999999998863 36788899999999999999999999999999999999999
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
..+....+|...|.+++|+|||..+++|+.|..-+|||+|++.++..+..+. ..++|+|+|..+++|+.|++++|||
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 9988889999999999999999999999999999999999999988877654 5789999999999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEec-CCCeeEEEEe
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFP-DQQGFLVCIH 192 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~~~ 192 (194)
++..+. ......|..-|+.+.|+| .|.+|++|+.
T Consensus 374 LR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 374 LRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eccccc--ceecccccchhhheEecccCCeEEEEccc
Confidence 998765 334456899999999999 5677777653
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=205.25 Aligned_cols=185 Identities=26% Similarity=0.398 Sum_probs=146.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.|++|+|++..|++|+.|.++|+||+.+.. ......+|..-|.|++|+|||+.|++|+.||.|++||.++++
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 479999999999999999999999999999874 367788999999999999999999999999999999999988
Q ss_pred ce-EEeccCCCcEEEEEecC-----CCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEe--------------
Q 039044 81 QP-VTVAMHDAPIKEVAWIP-----EMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALT-------------- 137 (194)
Q Consensus 81 ~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~-------------- 137 (194)
++ ..+.+|...|++++|.| ..++|++++.||.++|||+..++++..+..+. +|+.+.
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 75 46899999999999987 56799999999999999998776554443322 222221
Q ss_pred --------------------------------------cCC-------------------------CEEEEEcCCCcEEE
Q 039044 138 --------------------------------------VRY-------------------------PLMVVGTADRNLVV 154 (194)
Q Consensus 138 --------------------------------------~~~-------------------------~~l~~~~~dg~v~~ 154 (194)
+.+ +.+++|+.|.++.+
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence 111 13555555555555
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+....+++..++ .+|..-|+.+.|+||++++++++
T Consensus 351 W~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 351 WNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred ecccccccchhhh-hchhhheeeEEECCCccEEEEee
Confidence 5555444443333 35778899999999999999886
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-35 Score=191.13 Aligned_cols=181 Identities=21% Similarity=0.370 Sum_probs=157.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|..++.++++++.++++.|+++++||+..++. ...+.+|...|.+++|+||.+++++|+.|.+|++|+.... +
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-c 138 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGES-----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-C 138 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcE-----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-E
Confidence 377899999999999999999999999999843 6778899999999999999999999999999999998654 4
Q ss_pred eEEeccC--CCcEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEE
Q 039044 82 PVTVAMH--DAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 82 ~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
..++..+ ...|+++.|+|+ ..+|++++.|++|++||+++.+..+.+..+ .+.+.++|||...++|+.||.+.+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 4444333 788999999997 789999999999999999998887777654 468899999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
||++..+..+ ...+...|++++|+|+...|+.+.
T Consensus 219 wdL~~~k~ly---sl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 219 WDLNEGKNLY---SLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred EEccCCceeE---eccCCCeEeeEEecCCceeEeecc
Confidence 9999987532 234778899999999998887764
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-35 Score=198.15 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=157.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-----CCCeEEEecCCCeEEEEec
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-----DGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~ 76 (194)
.|.|++|+|||+.||+|+.||+|++||..+++ ..-..+.+|...|++++|.| ..++|++++.||.|+|||+
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ----QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCC----cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 48899999999999999999999999998876 34567789999999999977 5679999999999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce--------------------------------
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-------------------------------- 124 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-------------------------------- 124 (194)
..+.++..+.+|..+|+|+.|--+ .++++++.|++|++|+...+...
T Consensus 235 ~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 235 KLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred cCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 999999999999999999999655 48999999999999986543110
Q ss_pred -----------------------------------------------eEEe---cCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 125 -----------------------------------------------HTQQ---LPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 125 -----------------------------------------------~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
..+. .-++.+.|+|+++++++++-|..|++
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence 0000 01247899999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
||.++++. .....+|-..|..++|+.|.+.|++|+.
T Consensus 394 W~g~tGk~--lasfRGHv~~VYqvawsaDsRLlVS~Sk 429 (480)
T KOG0271|consen 394 WDGRTGKF--LASFRGHVAAVYQVAWSADSRLLVSGSK 429 (480)
T ss_pred eeCCCcch--hhhhhhccceeEEEEeccCccEEEEcCC
Confidence 99999873 3445678899999999999999999975
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=184.61 Aligned_cols=190 Identities=19% Similarity=0.292 Sum_probs=168.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCc-ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGT-GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|..++|+|.++++|+|+-|+...||++..... ........+.+|.+.+.|+.|-+| ..|+|++.|.++.+||+++++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce
Confidence 478999999999999999999999999985422 222345668899999999999974 578999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+...+++..+ ++.++|.|+|.-+++|+.|++.++||
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 9999999999999999999 8999999999999999999999999888765 47899999999999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+|..++...........+|++++|+..|++|.+|..
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 999876555555556678999999999999999753
No 8
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.3e-33 Score=202.34 Aligned_cols=192 Identities=17% Similarity=0.253 Sum_probs=156.4
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCc--ccccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEec
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGT--GVASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~ 76 (194)
++|++++|+| ++++|++|+.|++|++||+..... ........+.+|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 4689999999 789999999999999999976531 0112234567899999999999975 68999999999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC----eEEEEecCCCEEEEEc----C
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLMVVGT----A 148 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~----~ 148 (194)
++++.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..+. ....+.+++..+++++ .
T Consensus 156 ~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 156 ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 9998888899999999999999999999999999999999999998877765543 2456778777777654 4
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|+.|++||+++...+...........+....|+|++..++++..
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 78999999998765554443333445666788999999988764
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-33 Score=195.48 Aligned_cols=182 Identities=23% Similarity=0.329 Sum_probs=156.4
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC--
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-- 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-- 79 (194)
.|++++|+.+|..||+|+.||.+++|+..... ...+..|++||.+++|+.+|++|++++.|+++.+||..++
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 48999999999999999999999999987653 5677789999999999999999999999999999997443
Q ss_pred ---------------------------------------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 80 ---------------------------------------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 80 ---------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
.++.++.+|.++|.++.|+|.+.+|+++++|++++||.+..
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 34456677999999999999999999999999999999988
Q ss_pred CCceeEEecCC---eEEEEecCC---------CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 121 PNPVHTQQLPD---RCYALTVRY---------PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 121 ~~~~~~~~~~~---~~~~~~~~~---------~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
....+.+..+. -.+.++|.+ ..+++++.|++|++||...+..... ...|..+|.+++|+|+|++++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--LMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--eccCCCceEEEEecCCCcEEE
Confidence 77766655543 456777755 3799999999999999999875433 335889999999999999999
Q ss_pred EEE
Q 039044 189 VCI 191 (194)
Q Consensus 189 ~~~ 191 (194)
+|+
T Consensus 469 sGs 471 (524)
T KOG0273|consen 469 SGS 471 (524)
T ss_pred ecC
Confidence 985
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-33 Score=183.49 Aligned_cols=189 Identities=23% Similarity=0.322 Sum_probs=164.2
Q ss_pred CCeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|+.++..+. .+.+++++.|.++.+|++.......-.....+.+|...|..+..++||++.++++.|+.+++||+.++
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC
Confidence 46888888886 57899999999999999987755444556778899999999999999999999999999999999999
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC----CeEEEEecC--CCEEEEEcCCCcEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVR--YPLMVVGTADRNLV 153 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~~~~~--~~~l~~~~~dg~v~ 153 (194)
+..+.|.+|...|.+++|+++.+.+++|+.|++|++|++............ +.++.|+|+ ..+|++++.|++|+
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 999999999999999999999999999999999999998765444433332 479999998 68999999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+||+++.+. .....+|.+.++.+++||||...++|-
T Consensus 176 vWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 176 VWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred EEccCCcch--hhccccccccEEEEEECCCCCEEecCC
Confidence 999998663 344456889999999999999998864
No 11
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=184.70 Aligned_cols=187 Identities=61% Similarity=1.078 Sum_probs=168.0
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
|.|.+++|+| ...++++++.|++||+|++..... ........|.+++.+++|+.||..+++|+-|+.+++||+.++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCc---ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5789999999 456777999999999999987543 334666789999999999999999999999999999999998
Q ss_pred CceEEeccCCCcEEEEEecCCCC--EEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
....+..|..+|..+.|-+... .|++|+.|++|+.||+|+..++.++..+.++.+.+-....++.+..++.|.+|+|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 4556778999999999988655 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++..+++....+.+.+++|++..+|.+..+.|+
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 9988888888899999999999999988877764
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=182.34 Aligned_cols=182 Identities=24% Similarity=0.338 Sum_probs=164.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
-+.|+.|-+ ...|+|++.|.+..+||++++. ....+.+|.+.|.++.+.| +++.+++|+-|+..++||++.+.
T Consensus 147 ylScC~f~d-D~~ilT~SGD~TCalWDie~g~-----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 147 YLSCCRFLD-DNHILTGSGDMTCALWDIETGQ-----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred eeEEEEEcC-CCceEecCCCceEEEEEcccce-----EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 467888887 4578999999999999999984 3677889999999999999 99999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----CCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
+.+.|.+|...|++++|.|+|.-|++|++|++.++||+|..+.+..+.. +.+.++|+..|++|++|..|.++.+|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 9999999999999999999999999999999999999999887766654 45789999999999999999999999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|.-..+. .....+|..+|.|+..+|||..+++|+
T Consensus 301 Dtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 301 DTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGS 334 (343)
T ss_pred eccccce--EEEeeccCCeeEEEEECCCCcEEEecc
Confidence 9877653 344568999999999999999999886
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.9e-33 Score=201.90 Aligned_cols=188 Identities=26% Similarity=0.364 Sum_probs=161.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec-CCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL-LSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~ 80 (194)
+|.++.|+|+|+.+++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|+++++||+ ..+.
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 578999999999999999999999999955541 123444789999999999999999999999999999999 4457
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.++.+.+|...|++++|+|+++++++|+.|++|++||+++++++..+..+ +..++|++++.++++++.|+.|++||+
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 88899999999999999999999999999999999999999988777664 468899999999999999999999999
Q ss_pred CCCCee-eEEeeCCCcc-eeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTE-FKRINSPLKY-QTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~-~~~~~~~~~~-~v~~i~~~p~~~~l~~~~~ 192 (194)
.++... ...+...... +++++.|+|++++++++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 998732 2222222222 6999999999999998764
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=177.48 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=157.6
Q ss_pred CCeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|..++|+|- |..||+++.|..|++|+...... .........+|+..|.+++|+|.|++|++++.|.++.||.-..+
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC
Confidence 35889999997 88999999999999999986322 11122233479999999999999999999999999999987655
Q ss_pred --CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc------eeEEecCCeEEEEecCCCEEEEEcCCCc
Q 039044 80 --GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP------VHTQQLPDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 80 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
+++..+.+|...|.+++|+++|++||++++|+.|.||.+..... +..+...++.+.|+|....|++++.|.+
T Consensus 94 efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 94 EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence 45678899999999999999999999999999999999885542 3344455678999999999999999999
Q ss_pred EEEEECC-CCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 152 LVVFNLQ-NPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 152 v~~~d~~-~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|++|+-. ...-.......+|...|.+++|+|.|..|++|+.
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence 9999877 3332333444567789999999999999999874
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-33 Score=177.81 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=155.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+.+...|+++.||+++. ..||+||+++... .....+.+|...|.++.|..+|+.+++|++||+++|||++...+
T Consensus 42 qVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred ceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 5889999999999999885 5799999998865 45677889999999999999999999999999999999999766
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--------------------------------------
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-------------------------------------- 123 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------------------------------- 123 (194)
.+.++ |..+|+++..+|+...|+++..+|.|++||++....
T Consensus 118 qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 66665 779999999999988999999999999999875310
Q ss_pred -----------eeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 124 -----------VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 124 -----------~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
+++++. ......++|++++|++++.|.+++||+.++. ........+|...+...+||.||++|++
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEe
Confidence 111111 2235678999999999999999999999987 3344455678889999999999999999
Q ss_pred EEe
Q 039044 190 CIH 192 (194)
Q Consensus 190 ~~~ 192 (194)
++.
T Consensus 276 ass 278 (311)
T KOG0315|consen 276 ASS 278 (311)
T ss_pred cCC
Confidence 864
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-33 Score=203.37 Aligned_cols=155 Identities=21% Similarity=0.373 Sum_probs=143.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+|.++.|+|-|-++|+|+.|++.++|...... ....+.+|-..+.|+.|+|+.+++++|+.|.+|++||+.+|..
T Consensus 495 PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-----PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 495 PVWDVQFAPRGYYFATASHDQTARLWSTDHNK-----PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred ceeeEEecCCceEEEecCCCceeeeeecccCC-----chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE
Confidence 78999999999999999999999999988763 4678889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
++.|.+|.++|.+++|+|+|++|++|+.|+.|++||+.+++++..+.. ...++.|+.+|..|++|+.|.+|++||+.
T Consensus 570 VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 570 VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999999999999999999999999999999999999999987755544 45688999999999999999999999997
Q ss_pred CCC
Q 039044 159 NPQ 161 (194)
Q Consensus 159 ~~~ 161 (194)
...
T Consensus 650 ~~~ 652 (707)
T KOG0263|consen 650 KVI 652 (707)
T ss_pred hhc
Confidence 543
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=188.36 Aligned_cols=185 Identities=22% Similarity=0.306 Sum_probs=167.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|.|+++.|-.+.|++|+.|++++|||+.++. ....+.+|...+..+++++...++++++.|+.|+.||++..+
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 468999999999999999999999999999984 467788999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.++.+.+|-..|.+++.+|.-..|++++.|.++++||+|+...++.+.++ +..+.+.|....+++|+.|++|++||+
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 99999999999999999999999999999999999999999998887754 456777787889999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.++... ....|+..+++++.+|....+++++.
T Consensus 307 ~agkt~~--tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 307 RAGKTMI--TLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ccCceeE--eeecccceeeEEecCCchhhhhccCC
Confidence 9987533 23358889999999999998888764
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=200.84 Aligned_cols=185 Identities=21% Similarity=0.314 Sum_probs=158.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|++++|+|+++++++++.|+++++||+.... .....+.+|...|++++|+|+++++++|+.|++|++||++++++
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCC----eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE
Confidence 58999999999999999999999999994442 34567779999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC--ceeEEec-----CCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN--PVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
...+.+|...|++++|++++++|++++.|+.|++||+.++. +...+.. +...+.|+|++.++++++.|+.+++
T Consensus 281 ~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~ 360 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKL 360 (456)
T ss_pred EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEE
Confidence 99999999999999999999999999999999999999988 3333322 3578899999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcc---eeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQTEFKRINSPLKY---QTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~---~v~~i~~~p~~~~l~~~~~ 192 (194)
||++......... +|.. .+.+...++.++++++|+.
T Consensus 361 w~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 361 WDLRSGKSVGTYT--GHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred EEccCCcceeeec--ccCCcceeEecccccCCCCeEEEEeC
Confidence 9999876433322 2322 3445566788999998875
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=194.34 Aligned_cols=186 Identities=21% Similarity=0.280 Sum_probs=164.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|++++|+|+...|++++.||+|+|||...... ...+.+|...+.+++|+|...++++|+.|+.|++||.++++
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCch-----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 3689999999999999999999999999877642 45668999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecC-CCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVR-YPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~dg~v~~~d 156 (194)
++.++..|+..|..+.|+|++++|+++|.|..++++|+|+.+.+..+.. ...++.++|- ...+.+|+.||.|..|.
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 9999999999999999999999999999999999999997776665554 4578888984 46788899999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.. +.+...+...|...|.+++|+|-|..|++|+.
T Consensus 336 v~~-~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 336 VGL-EEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ccc-cccccCCCcccccceeeeeccccceeEeecCC
Confidence 873 34556677789999999999999999999864
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=180.09 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=162.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|+.+.|+|+|..||+|+.|..|.+|+...... -.....+|.+.|..+.|.+|++.+++++.|.+++.||+++|+
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEecccccc----ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence 4799999999999999999999999999766532 244556999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEE--ecCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.++.++.|..-|+.+.-+.-| .++.++++|+++++||+|+.+.++++ +.+..++.|...+..+.+|+-|+.|++||+
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeecc
Confidence 999999999999999854434 46778899999999999999999888 556778888889999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+.... .....+|..+|+.+..+|+|.++++-
T Consensus 204 r~~d~--~~~lsGh~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 204 RKNDG--LYTLSGHADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred ccCcc--eEEeecccCceeeEEeccCCCccccc
Confidence 98764 45567899999999999999988764
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=175.91 Aligned_cols=186 Identities=20% Similarity=0.333 Sum_probs=155.6
Q ss_pred CCeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~ 78 (194)
|.+.+++|+++ .+.+++++.||++++||+.... ......+.|...|.++.|++ +++.+++++.|++|++|+...
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCC----cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 46789999995 5789999999999999965543 34567789999999999999 566788899999999999999
Q ss_pred CCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEec-CCCEEEEEcCCCcEE
Q 039044 79 GGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTV-RYPLMVVGTADRNLV 153 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~dg~v~ 153 (194)
++.+.++.+|...|...+|+| .++.+++++.|+++++||++.......++.+. .++.|+. +...+++|+.|+.|+
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 999999999999999999999 67899999999999999999765444455544 3445554 557899999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+||+++.+.+...+ .+|...|+.++|||...-++++.
T Consensus 217 ~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 217 GWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred EEehhhccccceee-cCCceEEEEEecCcchhhHhhhc
Confidence 99999988776655 67899999999999876555443
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=189.77 Aligned_cols=182 Identities=16% Similarity=0.295 Sum_probs=158.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccC-CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
++|.++.|++++..+++|..+|.|+.|+.+... ...... |...|.+++|+|+...|++++.||.|+|||....
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccchhh------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 479999999999999999999999999987663 233444 5589999999999999999999999999999999
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
+....+.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ +..+.|.+++++|++++.|..+++||
T Consensus 213 kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D 292 (464)
T KOG0284|consen 213 KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD 292 (464)
T ss_pred chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence 888889999999999999999999999999999999999999988665544 45678999999999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+++.+..+ ...+|+..++++.|+|-...|++.
T Consensus 293 iR~mkEl~--~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 293 IRTMKELF--TYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred hhHhHHHH--Hhhcchhhheeeccccccccceee
Confidence 99765432 234688899999999977666654
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=168.55 Aligned_cols=183 Identities=22% Similarity=0.352 Sum_probs=160.3
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|..+.|+-+|++.++++.|.+|++|+...+. ......+|...|..++.+.|+..|++++.|..|.+||+++|+
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 579999999999999999999999999988773 477888999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--CceeEEec-CCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHTQQL-PDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
..+.+.+|..+|+.++|+.+...+++++.|.++++||.|+. ++++.+.. .....++.-.+..|++|+.||+++.||+
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEe
Confidence 99999999999999999999999999999999999999864 45655543 2345566677888999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|.++... .-...+|+|+.|+||+.-.++++-
T Consensus 173 R~G~l~s----Dy~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 173 RKGTLSS----DYFGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred ecceeeh----hhcCCcceeEEecCCCCEEEEeec
Confidence 9987432 234568999999999998887753
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-31 Score=190.50 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=165.9
Q ss_pred CeeeEEEcCCCCEEEEeeCC-CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWD-NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d-~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+|..++|+..|+.||.|+.. |.+.+|+..... .....++|-..+++++++|||++++||+.||+|+|||..++-
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 57889999999999998764 899999998763 355667899999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC----eEEEEecCCCEEEEEcCCCc-EEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLMVVGTADRN-LVVF 155 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~-v~~~ 155 (194)
+..++..|...|+.+.|+..|+.+++++.||+|+.||+......+++..+. .+++..|.|..+.+|+.|.. |++|
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 999999999999999999999999999999999999999999998887765 58899999999999999875 9999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++.+++. .....+|.++|.+++|+|++..|++++
T Consensus 464 S~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 464 SVQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred EeecCee--eehhcCCCCcceeeEEccccCeEEecc
Confidence 9999874 455678999999999999999999886
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=3.3e-30 Score=180.49 Aligned_cols=187 Identities=17% Similarity=0.280 Sum_probs=151.1
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC--
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG-- 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-- 80 (194)
|+|+.|+|||+++++++.||++.+||-.+++.. .......+|++.|.++.|+||++++++++.|.+++|||+.+.+
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~v--g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV--GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEE--EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 789999999999999999999999998877531 1112245899999999999999999999999999999986542
Q ss_pred -----------------------------------------ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 81 -----------------------------------------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 81 -----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
.+..+.+|...|+++..+|++++|++++.||.|.-||..
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 223345699999999999999999999999999999976
Q ss_pred CCCc-----------e--------------------eEE-----------------------------------------
Q 039044 120 QPNP-----------V--------------------HTQ----------------------------------------- 127 (194)
Q Consensus 120 ~~~~-----------~--------------------~~~----------------------------------------- 127 (194)
++.. + +..
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 4310 0 000
Q ss_pred ------------ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 128 ------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 128 ------------~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.....+++++|++..++.|++||.|++|.+.............|.+++++++++||+.+|++|-
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred EecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 0011478889999999999999999999998766433334556899999999999999999873
No 26
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.1e-32 Score=180.92 Aligned_cols=189 Identities=18% Similarity=0.301 Sum_probs=159.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccc---cccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVA---SVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
.+.|..|+|||++|++|+.||.|.+|++.+++.... .....+.-+..++.|+.|+.|..++++|+.||.|++|.+++
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 367889999999999999999999999988754211 11223345788999999999999999999999999999999
Q ss_pred CCceEEec-cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEE
Q 039044 79 GGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 79 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
|.+++.+. +|...|+++.|+.|+..+++++.|.++++--+.++++++++.++. +...|.++|.++++++.||+|++
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence 99999886 899999999999999999999999999999999999999988765 56789999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCC-CeeEEE
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQ-QGFLVC 190 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~ 190 (194)
|+..+.++.......+...+|+++..-|.. .++++|
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 999987754333334455677887776643 455554
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=3.8e-30 Score=177.91 Aligned_cols=188 Identities=20% Similarity=0.300 Sum_probs=161.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcc------------------------------------ccccccccc
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTG------------------------------------VASVPKASI 44 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~------------------------------------~~~~~~~~~ 44 (194)
++|.++.|+..|++|++++.|+++.+||..++... .......+.
T Consensus 277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~ 356 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI 356 (524)
T ss_pred CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee
Confidence 58999999999999999999999999998543210 011234456
Q ss_pred CCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCC---------CEEEEeeCCCeEEE
Q 039044 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM---------NLLATGSWDKTLKY 115 (194)
Q Consensus 45 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~v~v 115 (194)
+|.++|.++.|+|.+.+|++++.|++++||..........+.+|...|..+.|+|.| ..+++++.|++|++
T Consensus 357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 799999999999999999999999999999999989999999999999999999954 57999999999999
Q ss_pred EeCCCCCceeEEe---cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 116 WDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 116 wd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
||+..+.+++.+. .++..++|+|+++++++|+.||.|++|+.++++. ++.. ...+.|..+.|+.+|..+.++.
T Consensus 437 wdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l-~~s~--~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 437 WDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL-VKSY--QGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred EEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe-eEee--cCCCeEEEEEEcCCCCEEEEEe
Confidence 9999999998874 3567899999999999999999999999998874 3333 2456699999999999888765
No 28
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.9e-29 Score=184.55 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=143.4
Q ss_pred CCeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCccc---ccccccccCCCCCeeEEEEecCCCe-EEEecCCCeEEEEe
Q 039044 1 DSVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGV---ASVPKASISHDHPVLCSTWKDDGTT-VFSGGCDKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~d 75 (194)
++|.+++|+|+ +.+|++|+.|++|++||+....... ......+.+|...|.+++|+|++.. +++++.|+.|++||
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWD 154 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWD 154 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 46999999996 7899999999999999997643210 0112345679999999999998875 57899999999999
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe-----EE---EEecCCCEEEEEc
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-----CY---ALTVRYPLMVVGT 147 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~---~~~~~~~~l~~~~ 147 (194)
+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+.++..+.. .+ .+++++.++++++
T Consensus 155 l~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 155 IENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred CCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 99988777665 667899999999999999999999999999999988877765431 11 2347888999887
Q ss_pred CCC----cEEEEECCCCCeeeEEeeC-CCcceeeEEEEecCCCeeEEEE
Q 039044 148 ADR----NLVVFNLQNPQTEFKRINS-PLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 148 ~dg----~v~~~d~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.++ .|++||+++...+...... ...+.+...-..++|.++++|.
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 764 7999999975544443322 2222233333345577777764
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.9e-30 Score=172.83 Aligned_cols=183 Identities=25% Similarity=0.364 Sum_probs=165.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|.++.|-|.|.+++++++|.+|+.|++.++- ....+.+|..-+..++.+.||..+++++.|.++++|-+.++++
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-----cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-----CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccce-----eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh
Confidence 47899999999999999999999999999984 4788889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCC----------C-----CEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEE
Q 039044 82 PVTVAMHDAPIKEVAWIPE----------M-----NLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLM 143 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l 143 (194)
...++.|+.+|.+++|.|. + +++.+++.|++|++||+.++.++.++..+. +.++|+|.|+||
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 9999999999999999872 2 589999999999999999999999887765 678999999999
Q ss_pred EEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 144 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 144 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++..|+++++||+++.++. +.. ..|..-++++.|+.+-.++++|+
T Consensus 350 ~ScaDDktlrvwdl~~~~cm-k~~-~ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCM-KTL-EAHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred EEEecCCcEEEEEeccceee-ecc-CCCcceeEEEecCCCCceEEecc
Confidence 99999999999999987753 333 36889999999999999999885
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.9e-30 Score=185.22 Aligned_cols=184 Identities=18% Similarity=0.314 Sum_probs=159.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.+++++++|||+++|+|+.||+|++||...+-+ ..++..|+..++.+.|+..++.+++.+.||+|+.||+....
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceE-----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 3689999999999999999999999999988854 77888999999999999999999999999999999999988
Q ss_pred ceEEecc-CCCcEEEEEecCCCCEEEEeeCCC-eEEEEeCCCCCceeE---EecCCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 81 QPVTVAM-HDAPIKEVAWIPEMNLLATGSWDK-TLKYWDTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 81 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~-~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
..+++.. .+-+..+++..|.|..+..|+.|. .|.+|++.+++.+.. ++.++.+++|+|.+..|++++.|.+|++|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 8888764 345678999999999999988876 699999999997654 55677889999999999999999999999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+-........+. +...+..++|+|+|+.++++.
T Consensus 506 ~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 506 DIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred EeeccCceeeeEe--eccceeEEEEcCCCCeEEEEE
Confidence 9976543333333 456689999999999999874
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=162.60 Aligned_cols=171 Identities=20% Similarity=0.298 Sum_probs=134.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC--
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-- 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-- 79 (194)
-|+++.|..+|+.+++|++||+++|||++.... .....+..+|+++..+|+...|++|..+|.|++||+...
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCccc------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence 478999999999999999999999999987532 344456688888888888888888888888888887432
Q ss_pred -----------------------------------------------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCe
Q 039044 80 -----------------------------------------------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT 112 (194)
Q Consensus 80 -----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 112 (194)
+++..++.|+..+..+.++|++++|++++.|.+
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 223456678899999999999999999999999
Q ss_pred EEEEeCCCC-CceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEE
Q 039044 113 LKYWDTRQP-NPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAA 180 (194)
Q Consensus 113 v~vwd~~~~-~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~ 180 (194)
++||+.... +....++.+. -..+|+.+++||++|+.|+.+++||++.++.. ... .+|.....|++.
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-~qy-~gh~K~~vc~~l 308 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV-RQY-QGHHKAAVCVAL 308 (311)
T ss_pred EEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee-eec-CCcccccEEEEe
Confidence 999999877 3334444443 35689999999999999999999999988743 222 344444455544
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=172.49 Aligned_cols=186 Identities=22% Similarity=0.290 Sum_probs=164.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.+++|+..|+++++++.|-.+++||..+.. .......+|+..|.+++|-|.|.++++++.|.+|+.|++.++-
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred cceeEEEEecCccEEEecCCccchhheeHHHHH----HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce
Confidence 468899999999999999999999999998742 3456677899999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC---ceeEEecCCeEEEEecC---------------CCE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---PVHTQQLPDRCYALTVR---------------YPL 142 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~---------------~~~ 142 (194)
++..+.+|...|.-++.+.||.++++++.|.+|++|-+.+++ .+..++.+..+++|.|. +++
T Consensus 227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence 999999999999999999999999999999999999999884 45666677778877763 258
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.+++.|++|++||+.++...+ ...+|...|+.++|+|.|++|+++..
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~--tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLF--TLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred EEeecccceEEEEeccCCeEEE--EEecccceeeeeEEcCCCeEEEEEec
Confidence 9999999999999999987543 33568999999999999999999874
No 33
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=185.89 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=150.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCC----------------------------c-----------------c
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGG----------------------------T-----------------G 35 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~----------------------------~-----------------~ 35 (194)
++|.++.|++||++||+|++|+.|+||.+...+ . .
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 579999999999999999999999999986500 0 0
Q ss_pred ----------cccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecC-CCCEE
Q 039044 36 ----------VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLL 104 (194)
Q Consensus 36 ----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 104 (194)
.......+.+|.+.|..+.|+. .++|++++.|.+|++|++...+++..|. |..-|+|++|+| |.+||
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryF 425 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYF 425 (712)
T ss_pred ccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcE
Confidence 0011223467999999999995 4689999999999999999999999887 999999999999 78999
Q ss_pred EEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEee-------CCCccee
Q 039044 105 ATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRIN-------SPLKYQT 175 (194)
Q Consensus 105 ~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~~~v 175 (194)
++|+.|+.++||++...+.+.-... -++++++.|+|++.++|+.+|..++|+.+..+....... ..++ .|
T Consensus 426 iSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rI 504 (712)
T KOG0283|consen 426 ISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RI 504 (712)
T ss_pred eecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-ee
Confidence 9999999999999998877655444 457999999999999999999999999987653222211 1233 79
Q ss_pred eEEEEecCCC-eeEEE
Q 039044 176 RCVAAFPDQQ-GFLVC 190 (194)
Q Consensus 176 ~~i~~~p~~~-~l~~~ 190 (194)
+.++|.|... .+++.
T Consensus 505 TG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVT 520 (712)
T ss_pred eeeEecCCCCCeEEEe
Confidence 9999998654 24443
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-30 Score=183.82 Aligned_cols=185 Identities=22% Similarity=0.336 Sum_probs=162.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
|-|.+++.+|...++++++.|-+|++||.+..- .....+.+|..-|.+++|+| |.+.+++++-|++|++|.+.+.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCce----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 458999999999999999999999999998763 45678889999999999999 7789999999999999999999
Q ss_pred CceEEeccCCCcEEEEEecC--CCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
.+..++.+|...|+++.+-+ +..+|++|++|.+++|||..+..++.+++++ ...+.|+|.-..+++|++||+++|
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence 99999999999999999988 4579999999999999999999999888765 467889999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+..+.+.+ ..+.. .-.+++|++-.+.+..+++|.
T Consensus 254 Whs~Ty~lE-~tLn~-gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 254 WNSKTYKLE-KTLNY-GLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred ecCcceehh-hhhhc-CCceEEEEeecCCCCeEEEec
Confidence 998876543 22322 346789999888888888775
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.3e-28 Score=191.12 Aligned_cols=190 Identities=15% Similarity=0.259 Sum_probs=152.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcc--cccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTG--VASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~ 77 (194)
+.|.+++|+|+++++++|+.|+.|++|+....... ....+.....+...+.+++|+| ++++|++++.||.|++||+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 35899999999999999999999999997642110 0001111223456799999987 47899999999999999999
Q ss_pred CCCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEEecC--CeEEEEe-cCCCEEEEEcCCCcEE
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--DRCYALT-VRYPLMVVGTADRNLV 153 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~dg~v~ 153 (194)
+++.+..+..|...|++++|+| ++.+|++++.|+.|++||++++..+..+... ..++.|. +++.++++|+.||.|+
T Consensus 564 ~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 9988888999999999999997 7899999999999999999998877766543 3456664 4789999999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+||+++...+.... ..|...|.++.|. ++..+++++.
T Consensus 644 iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 644 YYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred EEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEEC
Confidence 99998765433333 4688899999997 6777777753
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.9e-28 Score=166.26 Aligned_cols=184 Identities=24% Similarity=0.392 Sum_probs=157.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|++++|+|+++++++++.||.+++|++.... .......|...+..+.|.|+++++++++.+|.|++|++++++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence 478999999999999999999999999998764 244556788889999999999999999999999999999888
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.+..+..|...+.++.|+|+++++++++.++.+.+||+++.+....+.. ...++.++|++.++++++.++.|++||+
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 8888888999999999999988888888899999999998777666553 3578899999899998888999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++.+.. ... ..+...+.++.|+|+++.++++.
T Consensus 165 ~~~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 165 RTGKCV-ATL-TGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred cccccc-eeE-ecCccccceEEECCCcCEEEEec
Confidence 876532 222 35667899999999998888775
No 37
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5e-29 Score=172.86 Aligned_cols=183 Identities=20% Similarity=0.301 Sum_probs=155.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|+++.|..||++||+|...|.|++||+.+. .....+.+|+.++..+.|+|+ +..+++|+.|+.+++||+.+..
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccH-----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 5789999999999999999999999996553 456788899999999999994 5678889999999999999888
Q ss_pred ceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCC-CceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQP-NPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
....+.+|++.|++.+|+| ++.++++||+||.|++||+|.. ..+.++.. +...+.+-|.|..+++++. ..|++||
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 7568899999999999999 5668999999999999999987 55655554 5678888899999998885 4599999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+-++.+....... |...|+|+.+..++..|++++
T Consensus 224 l~~G~qll~~~~~-H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 224 LTTGGQLLTSMFN-HNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred ecCCceehhhhhc-ccceEEEEEeecCCceEeecc
Confidence 9977655444433 788999999999999888874
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=180.94 Aligned_cols=188 Identities=19% Similarity=0.220 Sum_probs=162.1
Q ss_pred CeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCccccccc----ccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec
Q 039044 2 SVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVP----KASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 2 ~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 76 (194)
.|.+++++..+ .+|++++.|+++++|++...+....... .....|...|+|++.+|+.++++||+.|.+.++|++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 57888887654 7899999999999999987332111111 234569999999999999999999999999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe---EEEEecCCCEEEEEcCCCcEE
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~v~ 153 (194)
+.......+.+|...|.++.|+|..+.++|+|.|++|+||.+.+..+++++.++.. ...|-.++..|++++.||-++
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 98888889999999999999999999999999999999999999999999997654 457788999999999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+|++.+..+. .....|...|+.++.+|.+.++++|.
T Consensus 573 lWnikt~eC~--~tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 573 LWNIKTNECE--MTLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred EEeccchhhh--hhhhhccceeEEEeecCccceeEecC
Confidence 9999998753 33456999999999999999888764
No 39
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.7e-28 Score=160.77 Aligned_cols=183 Identities=36% Similarity=0.675 Sum_probs=161.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|.++.|+|.+..|++++.||++++|+..... ......|..++.+++|.+ ...+++|+.||.|+.+|+.+++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 468999999999999999999999999998763 345557899999999997 4678999999999999998876
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
... +..|..+|+++.+++....+++||.|++|++||.|.......+.......+++-.++.|+.|+.+..+.+||+|+.
T Consensus 87 ~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 87 EDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 644 5569999999999998889999999999999999987777777777788899999999999999999999999999
Q ss_pred CeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 161 QTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 161 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..+++......+.+++|+++.|++..+++++
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 8888777888999999999999888777764
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2e-29 Score=162.31 Aligned_cols=184 Identities=18% Similarity=0.361 Sum_probs=163.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
-|.+++|+.|.+.|++|+.+..+|+||++..+ ..+....+|.+.|..+.|....+.|++...|+.||+||.+++..
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~----App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC----CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 37899999999999999999999999998875 45677889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC--eEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
++.+. .+.+|+++..+++|+++.+ .+.+.|.+||..+-.+++..+.+. .+.+++|+...+++|++|..++.||..+
T Consensus 178 v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 178 VQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred EEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccC
Confidence 98876 5778999999999987654 457899999999999999888765 5678899999999999999999999999
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++.. .....+|.++|.|+.|+|+|...++|++
T Consensus 256 geEi-~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 256 GEEI-GSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred Ccee-eecccCCCCceEEEEECCCCceeeccCC
Confidence 8754 3346778999999999999999999875
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4e-28 Score=157.60 Aligned_cols=171 Identities=22% Similarity=0.326 Sum_probs=145.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC-
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG- 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~- 80 (194)
+|.+++|+|.|++|++|+.|.++.||.-..++- .....+.+|+..|.|++|+++|++|+++++|..|-+|.+..+.
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef---ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEF---ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecCCCce---eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 588999999999999999999999998775543 5577888999999999999999999999999999999998654
Q ss_pred --ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC---CCceeEEecCC---eEEEEecCCCEEEEEcCCCcE
Q 039044 81 --QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPD---RCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v 152 (194)
+...++.|...|..+.|+|...+|+++++|++|++|+-.. .++..++..+. -+++|++.|..|++++.|+++
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 4556889999999999999999999999999999998762 33566666554 367889999999999999999
Q ss_pred EEEECCCCCeeeEEeeCCCcceeeEEEEe
Q 039044 153 VVFNLQNPQTEFKRINSPLKYQTRCVAAF 181 (194)
Q Consensus 153 ~~~d~~~~~~~~~~~~~~~~~~v~~i~~~ 181 (194)
+||-+... +...|+.++..+.|.
T Consensus 220 ~Iw~~~~~------~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 220 SIWRLYTD------LSGMHSRALYDVPWD 242 (312)
T ss_pred EeeeeccC------cchhcccceEeeeec
Confidence 99987632 223366777888887
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.6e-29 Score=184.30 Aligned_cols=186 Identities=18% Similarity=0.264 Sum_probs=167.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|..++|+|....++++-..|.|++||++-+. ....+..|.++|..++|+|++.+|++|+.|-.|++|+.++.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 47789999999999999999999999998773 4678889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+.++.+|-..|+.+.|++.-.+++++|+|.+|+||+..+.+++....++. .|..|+|....++++|.|.+|++||+.
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence 99999999999999999999999999999999999999999998887765 578899999999999999999999986
Q ss_pred CCCe---------------------------eeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 159 NPQT---------------------------EFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 159 ~~~~---------------------------~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..++ ..+....+|...|+-++|+|.-..+++|..
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 3221 233445678889999999999999998864
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=161.12 Aligned_cols=185 Identities=19% Similarity=0.338 Sum_probs=159.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.+++.+|+.+++++|+.|..-.+|++.+++ ....+.+|+..|+++.|+.+|.+|+||+.+|.|+||+..++.
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 478999999999999999999999999999985 367788999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.++ .++-.|.|+|+.++++..||+|++||+
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEec
Confidence 88888766677888999999999999999999999999987766666654 456789999999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.+++.. ..+.........++.++..+..++.|.
T Consensus 220 ktg~p~-~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 220 KTGQPL-HKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred CCCcee-EEecccccCcCCccccccccceeEecc
Confidence 998754 444433355667788877777776654
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1e-29 Score=176.12 Aligned_cols=184 Identities=20% Similarity=0.349 Sum_probs=160.3
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|+++.|.| .+.+|++++.|+.|+||++.... .....+.+|..+|..++|+++|..|++++.|+.+++||+++|+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 588999999 78999999999999999998843 4578889999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
++..+. ....++++.|+|++ +.+++|+.|+.|+.||+|+++.+++... ....+.|-+++.++++.+.|++++||+
T Consensus 292 ~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 292 VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 998886 45678999999987 7899999999999999999998877654 456788999999999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.+.+- +.+...........++..+|++.+++.=+
T Consensus 371 ~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 371 NRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred cCCCc-cchhhcchhhccCcceecCCCCCeehhhc
Confidence 98764 34444444556678999999999887644
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-27 Score=156.26 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=159.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC--CCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC--DKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~ 78 (194)
+.|+++.|+++|..+++++.|-+++|||...+.. ......++-.+..++|....+.++.++. |..|+..++.+
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----eeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 4689999999999999999999999999988853 5555666667888999877777776665 88999999999
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC-eEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-RCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.+.++-+.+|...|+.++.+|-+..+++++.|++|++||+|..++...+.... ...+++|+|-++|++.....|++||+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999999999988999999999999999999888777666544 57899999999999998889999999
Q ss_pred CCC-CeeeEEeeC--CCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNP-QTEFKRINS--PLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~-~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|.. +.|+..... +...+.+.+.|+|||+.|+.+..
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 986 345544332 34567899999999999988754
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=3.5e-27 Score=162.73 Aligned_cols=184 Identities=26% Similarity=0.366 Sum_probs=156.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|.++.|+|+++++++++.|+.+++|++..... ......|...+.+++|+|+++++++++.++.|++||+++++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 588999999988999988899999999986532 344447888999999999999999988899999999998888
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe---cCCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+..+..|...+.+++|+|+++.+++++.++.+++||++.++.+..+. .....+.+++++.++++++.+|.+++||++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 88888898899999999999999999999999999999887776653 245678899998888888889999999998
Q ss_pred CCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 159 NPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.+. ...+ ..+...+.+++|+|++..++++..
T Consensus 250 ~~~~-~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 250 TGEC-VQTL-SGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred Ccee-EEEc-cccCCcEEEEEECCCCCEEEEecC
Confidence 7653 2333 257778999999999999988753
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.1e-28 Score=156.46 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=150.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC-
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG- 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~- 79 (194)
.|.+++|+.+|..|++|+.|+++++|+++.... .......+|.+.+-.++|+| ....|++++.|..|++||.+.+
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k 98 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK 98 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhh---hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc
Confidence 578999999999999999999999999987632 23344557777888888877 4567888888888888887543
Q ss_pred --------------------------------------------------------------------------------
Q 039044 80 -------------------------------------------------------------------------------- 79 (194)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (194)
T Consensus 99 ~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 99 CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence
Q ss_pred -CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---eEEecCCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 80 -GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQQLPDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 80 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
+++..+++|+....|+.|+|+|++|++|+.|..+.+||+...-++ ..+.-+++.++|+-+|++|+++++|..|-|=
T Consensus 179 Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIA 258 (313)
T ss_pred cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeE
Confidence 233445568888889999999999999999999999999875544 4455688999999999999999999999999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.+++.+... .++.++...++|+|....|+.+.
T Consensus 259 ~vetGd~~~e---I~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 259 EVETGDRVWE---IPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred ecccCCeEEE---eeccCCceeEEecCCCceeeEEe
Confidence 9999986543 34778899999999999888764
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.5e-27 Score=183.20 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=149.7
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.|.+++|+| ++.+|++++.||+|++||+.++. ......+|...|.+++|+| ++.+|++|+.|+.|++||++++
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 467899987 47899999999999999998763 2455678999999999997 7889999999999999999998
Q ss_pred CceEEeccCCCcEEEEEec-CCCCEEEEeeCCCeEEEEeCCCCC-ceeEEec---CCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 80 GQPVTVAMHDAPIKEVAWI-PEMNLLATGSWDKTLKYWDTRQPN-PVHTQQL---PDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
..+..+.. ...+.++.|+ +++.+|++|+.|+.|++||+++.+ ++..+.. ....+.|. ++.++++++.|++|++
T Consensus 609 ~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 609 VSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred cEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 88877764 4689999995 479999999999999999998765 3444333 34567775 6789999999999999
Q ss_pred EECCCCC-----eeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQ-----TEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~-----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
||++... .+.. ...+|...+.++.|+|++.+|++|+.
T Consensus 687 Wd~~~~~~~~~~~~l~-~~~gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 687 WDLSMSISGINETPLH-SFMGHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred EeCCCCccccCCcceE-EEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 9998532 1222 33457788899999999999999874
No 49
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9.4e-28 Score=164.83 Aligned_cols=189 Identities=19% Similarity=0.200 Sum_probs=157.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+.+..+|.|++|++++.|++..+.|+.++.. ..........-.+++.+|+|||..|.+|..|+.|++||+.++.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~---lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ---LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcE---EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 4689999999999999999999999999998864 1112222344568999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC----CeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
....|.+|.++|..++|+.+|.||+++.+|+.|++||+|..+..+++..+ ...++|.+.|.+|+.++.+=+|++++
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 99999999999999999999999999999999999999998888777654 46889999999999998887777777
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
-.+.+-........|.+..+++.|....+++++++.
T Consensus 461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred cccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 555432222233446678899999999999988764
No 50
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.7e-28 Score=182.13 Aligned_cols=191 Identities=26% Similarity=0.338 Sum_probs=153.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCC-------------cccccccccccCCCCCeeEEEEecCCCeEEEecC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGG-------------TGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC 67 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 67 (194)
+.|+|+.|+|||++||+|+.|+.|.+|...... .........+.+|...|..++|+|++.+|++++.
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 479999999999999999999999999987310 0112234556789999999999999999999999
Q ss_pred CCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE---------------------
Q 039044 68 DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--------------------- 126 (194)
Q Consensus 68 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~--------------------- 126 (194)
|++|.+|+.++.+.+..+.+|...|..+.|.|-|+||++-++|++|++|++......+.
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 99999999999999999999999999999999999999999999999999654221111
Q ss_pred ----------------------------------EecCCeEEEEecC-------------CC----EEEEEcCCCcEEEE
Q 039044 127 ----------------------------------QQLPDRCYALTVR-------------YP----LMVVGTADRNLVVF 155 (194)
Q Consensus 127 ----------------------------------~~~~~~~~~~~~~-------------~~----~l~~~~~dg~v~~~ 155 (194)
+..+..++.|+|. .+ .+++|+.|++|.||
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 1112346677661 11 57889999999999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.....+ |......-....|..++|+|||..|.+|+.
T Consensus 310 ~T~~~R-Pl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 310 NTALPR-PLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred ecCCCC-chhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 996655 444444446678999999999999998874
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.8e-27 Score=165.91 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=160.3
Q ss_pred CeeeEEEcCCCC-EEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKAN-ILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|++++|-|... .+++|+.|++|.+|+-..- ........|..-|+|+.|+|||+++++++.||++.+||-.+++
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 478899999764 6899999999999985543 2345566799999999999999999999999999999999999
Q ss_pred ceEEec---cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC----eEEEEecCCCEEEEEcCCCcEE
Q 039044 81 QPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD----RCYALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 81 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~v~ 153 (194)
.+..+. +|++.|.+++|+||+..+++++.|.+++|||+.+.+++.++.... ..+-.-+....|++.+.+|+|.
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 999887 899999999999999999999999999999999999988876644 3444455688999999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+++...+. ......+|...|+++..+|++++|++|++
T Consensus 304 ~ln~~d~~--~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 304 YLNPSDPS--VLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EecccCCC--hhheecccccceeEEEEcCCCCEEEeecc
Confidence 99999877 34455679999999999999999999875
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1e-28 Score=171.25 Aligned_cols=180 Identities=17% Similarity=0.316 Sum_probs=150.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+|.+++|+++|..+++++.|+.+++||.+++.. .........++|+.|+|++ +.+++|+.|+.|+.||+++++
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~------~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQV------LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceE------EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 588999999999999999999999999999853 2333456678999999988 889999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE----------------------------------
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---------------------------------- 126 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---------------------------------- 126 (194)
.++++..|-+.|..+.|-++|+++++.++|++++||+.+.+-+++.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 9999999999999999999999999999999999999875432100
Q ss_pred ------------Eec-----CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 127 ------------QQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 127 ------------~~~-----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
+++ -...+.|+|||.+|++|..||.+.+||.++.+. +.. ...|..++..+.|+|....-++
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~-lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSK-LKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhc-cccCCcceEEEEecCCCcceeE
Confidence 000 013578999999999999999999999998653 333 3457889999999997754443
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=165.29 Aligned_cols=185 Identities=21% Similarity=0.349 Sum_probs=145.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.-+.|+++|++||++++|.+..+|.+..... ......+.+|..+|..+.|+||.+++++++.+..+.+||+.+|.
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 5788999999999999999999999999876543 34567788999999999999999999999999999999999999
Q ss_pred ceEEec-cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----------ceeE-----------------------
Q 039044 81 QPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----------PVHT----------------------- 126 (194)
Q Consensus 81 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~----------~~~~----------------------- 126 (194)
....+. ++...+.+++|.|||..+++|+.|+++..||+.... .+..
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 877664 345789999999999999999999999999875320 0000
Q ss_pred -----------EecCCeEEEEecC---------------------------------------------CCEEEEEcCCC
Q 039044 127 -----------QQLPDRCYALTVR---------------------------------------------YPLMVVGTADR 150 (194)
Q Consensus 127 -----------~~~~~~~~~~~~~---------------------------------------------~~~l~~~~~dg 150 (194)
.+.+.+.++++.+ ..++++|++|+
T Consensus 383 ~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~ 462 (519)
T KOG0293|consen 383 REARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS 462 (519)
T ss_pred hhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc
Confidence 0001112222222 24789999999
Q ss_pred cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 151 NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
.|+||+..+++. .....+|...|+|++|+|....+.+
T Consensus 463 kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 463 KVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred eEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhh
Confidence 999999998763 3345679999999999997755443
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-27 Score=152.55 Aligned_cols=184 Identities=15% Similarity=0.245 Sum_probs=159.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+++-+.++.+|.+|.++++|.+..+|-...++. .....+|.+.|.|+..+.+.+++++|+.|.++++||+++|+.
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCce-----eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 678899999999999999999999998877643 678889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeC-----CCeEEEEeCCC-------CCceeEEecC---CeEEEEecCCCEEEEE
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSW-----DKTLKYWDTRQ-------PNPVHTQQLP---DRCYALTVRYPLMVVG 146 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~vwd~~~-------~~~~~~~~~~---~~~~~~~~~~~~l~~~ 146 (194)
+..++ ...+|..+.|+++|++++.+.+ .+.|.++|++. .++...+..+ ....-|.|.+++|++|
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 98887 5789999999999999887764 35799999983 4455555443 3577899999999999
Q ss_pred cCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 147 TADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.++|.|..||++++.+... ....|...|+.++++||..+++++++
T Consensus 166 he~G~is~~da~~g~~~v~-s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVD-SDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred cCCCcEEEEEcccCceeee-chhhhccccccccccCCcceEEeccc
Confidence 9999999999999875443 33458889999999999999999875
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=163.91 Aligned_cols=181 Identities=24% Similarity=0.403 Sum_probs=150.6
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+|..+.|+|+ +..+++|+.|+.+++||+.+.. ....+.+|++.|.|.+|+|. +..++||+.||.|++||++..
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred ceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 6888999995 5788899999999999998874 24567899999999999994 568999999999999999987
Q ss_pred -CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce-eE---EecCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 80 -GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-HT---QQLPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 80 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-~~---~~~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
..+.++. |..+|..+.+-|.|..+++++ ...+++||+-++... .. +...++|+++..++..|++++.|+.|++
T Consensus 187 ~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 187 TSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred CceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 5555665 999999999999999999987 579999999966543 22 3334579999999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
||+.+.+.. ..+ ...++|.+++.+|+++.+++|..
T Consensus 265 fd~t~~Kvv-~s~--~~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 265 FDTTNYKVV-HSW--KYPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred EEccceEEE-Eee--ecccceeeEEecCCCceEEEecc
Confidence 997765532 222 36689999999999999999863
No 56
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.6e-26 Score=169.01 Aligned_cols=186 Identities=13% Similarity=0.189 Sum_probs=142.5
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcc--------cccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEE
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTG--------VASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKM 73 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~ 73 (194)
|.....++++..+++++.+.....|+...+... .......+.+|.+.|.+++|+| ++++|++|+.|+.|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 444556667666777777777777775433210 0011234568999999999999 8899999999999999
Q ss_pred EecCCC-------CceEEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCE
Q 039044 74 WPLLSG-------GQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPL 142 (194)
Q Consensus 74 ~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~ 142 (194)
||+..+ +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+.. ...+++|+|++..
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 999764 2456788999999999999975 6999999999999999999887776654 3578899999999
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEeeCCCcc-eeeEEEEecCCCeeEEE
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRINSPLKY-QTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~ 190 (194)
|++++.|+.|++||+++++.. .... .|.. ....+.|.|++..++++
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v-~tl~-~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIV-SSVE-AHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEecCCCEEEEEECCCCcEE-EEEe-cCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999987643 3332 3433 34567888888777654
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=162.70 Aligned_cols=186 Identities=19% Similarity=0.250 Sum_probs=150.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC--
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS-- 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-- 78 (194)
++|+++.|.+++..+++++.|+.+++|+++... ...++.+|.+.++++.|......+++|+.|.+|++||+.+
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~ 294 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY 294 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchh-----hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence 468999999999999999999999999998874 4677788999999998877666577777666666666643
Q ss_pred -------------------------------------CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q 039044 79 -------------------------------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121 (194)
Q Consensus 79 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 121 (194)
+.+...... .+.|+++..++++..+++++.|.++.+.|+++.
T Consensus 295 C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred eeccccccccccceEecceeeeecccccceEEEeccCCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 333333332 347899999999999999999999999999998
Q ss_pred CceeEEecC-------CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 122 NPVHTQQLP-------DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 122 ~~~~~~~~~-------~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+..+.+... .+.+.|+|++.|+++|+.||.|+||++.+++.+...........|++++|+|.|++++++..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 887776543 35789999999999999999999999999886654444333347999999999999998764
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=177.10 Aligned_cols=187 Identities=18% Similarity=0.271 Sum_probs=160.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
|+|..++|+|++.++++|+.|-+|++|++.+..+ ...+.+|-+.|..+.|++.-.+|++++.|.+|+||+..+.+
T Consensus 52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-----lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-----LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred CccceeeecCCCCeEEecCCccEEEEEeccccee-----hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 6899999999999999999999999999998754 78888999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-----c----------------------e--eEEecC-
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-----P----------------------V--HTQQLP- 130 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~----------------------~--~~~~~~- 130 (194)
++..+.+|...|.|.+|+|....++++|.|.+|++||+..-+ + + +.++++
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 999999999999999999999999999999999999975211 0 0 112222
Q ss_pred --CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 131 --DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 131 --~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++..+|+|.-+.+++|+.|..|++|.+...+-=-.....+|.+.|.++-|+|....+++.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE 270 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC
Confidence 35678999999999999999999999976542112234578899999999999988887654
No 59
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.5e-29 Score=181.78 Aligned_cols=185 Identities=19% Similarity=0.301 Sum_probs=164.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.++.|+++..+|++|+.+|+|++||++... ....+.+|...+.++.|+|-+.+++.|+.|+.+++||.+...
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk-----~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-----IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhh-----hhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 368899999999999999999999999999774 467888999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe---cCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
+...+.+|...|..+.|+|+|+++++++.|..++|||...++..++++ .....+.++|..-.++.|+.|+++++||+
T Consensus 146 c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence 999999999999999999999999999999999999999999997777 55677889999889999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++.+.. .-..+....|.+.+|+|+++.+++|.+
T Consensus 226 etfe~I--~s~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 226 ETFEVI--SSGKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ceeEEe--eccCCccCCceeeeecCCceeeecCch
Confidence 986532 222334577999999999999887743
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.4e-28 Score=161.14 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=153.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccC------------C-cccccccccccCCCCCeeEEEEecCCCeEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRG------------G-TGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD 68 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~------------~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 68 (194)
++.+.+|+|||.++++|+.|..|+|+|++.. . .........+..|..+|+++.|+|....|++|+.|
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 5788999999999999999999999998721 1 11123345667799999999999999999999999
Q ss_pred CeEEEEecCCCCceEEec--cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE------EecCCeEEEEecCC
Q 039044 69 KQVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT------QQLPDRCYALTVRY 140 (194)
Q Consensus 69 ~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~ 140 (194)
++|++||..+....+.++ ....+|.++.|+|.|.+|+.|.+-..+++||+.+.++... +.....++.+++.+
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence 999999997755443332 2456899999999999999999999999999998876543 33445789999999
Q ss_pred CEEEEEcCCCcEEEEECCCCCeeeEEeeCC-CcceeeEEEEecCCCeeEEEE
Q 039044 141 PLMVVGTADRNLVVFNLQNPQTEFKRINSP-LKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 141 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+..++++.||.|++||--+.++ ...+... .+..|.+..|..+|++++++.
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred cEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 9999999999999999887664 3333333 356789999999999998764
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.9e-27 Score=163.66 Aligned_cols=189 Identities=23% Similarity=0.299 Sum_probs=152.0
Q ss_pred eeEEEcCC-CCEEEEeeCCCeEEEEecccCCc--ccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCC-
Q 039044 4 SSLCFSPK-ANILVATSWDNQVRCWEISRGGT--GVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLS- 78 (194)
Q Consensus 4 ~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~- 78 (194)
++++|++. .-.|++++.|++|++||+..... ........+.+|...|..++|++ +...|++++.|+.+.|||+++
T Consensus 181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred cccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 46889885 45799999999999999986543 12234456778999999999999 556888999999999999994
Q ss_pred -CCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC-ceeEEecC---CeEEEEecCC-CEEEEEcCCCc
Q 039044 79 -GGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-PVHTQQLP---DRCYALTVRY-PLMVVGTADRN 151 (194)
Q Consensus 79 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~---~~~~~~~~~~-~~l~~~~~dg~ 151 (194)
.++.....+|...|++++|+| ++..||+++.|++|.+||+|+.. +++++..+ ...+.|+|.. ..|++++.|+.
T Consensus 261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r 340 (422)
T KOG0264|consen 261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR 340 (422)
T ss_pred CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence 455566788999999999999 67789999999999999999854 56666554 3578899965 57888899999
Q ss_pred EEEEECCCCCee------------eEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 152 LVVFNLQNPQTE------------FKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 152 v~~~d~~~~~~~------------~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.+||+..-..+ ....-.+|...|..+.|+|+...++++..
T Consensus 341 l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 341 LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 999999753221 22445678899999999999999887654
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.1e-27 Score=179.53 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=155.1
Q ss_pred CeeeEEEcCCCCEEEEee--CCCeEEEEecccCCc-------ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEE
Q 039044 2 SVSSLCFSPKANILVATS--WDNQVRCWEISRGGT-------GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~--~d~~i~i~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 72 (194)
.|.+++.+|++..+++|+ .|+.+++|+...-.. ...........|.+.++|+.|+|||++||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 478999999999999999 899999999764210 11233445567999999999999999999999999999
Q ss_pred EEecCC----------C--------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---C
Q 039044 73 MWPLLS----------G--------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---D 131 (194)
Q Consensus 73 ~~d~~~----------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~ 131 (194)
+|+... + +....+.+|...|.+++|+|++.+|++++.|++|.+||.++.+.+..+..+ +
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV 174 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccc
Confidence 999762 0 235567899999999999999999999999999999999999877766554 5
Q ss_pred eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeC-----CCcceeeEEEEecCCCeeEEEE
Q 039044 132 RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINS-----PLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 132 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..+.|+|-|+|+++-+.|++|++|++.+... .+.+.. +.....+.+.|+|||++|++.-
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i-~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGI-EKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEEccccee-eEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 6899999999999999999999999776442 222222 2345678999999999998864
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=164.15 Aligned_cols=184 Identities=19% Similarity=0.265 Sum_probs=154.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.|+.|+.|.+++|+|+.||.|++|.+.++.+ .......|...|+|+.|+.|+..+++++.|.++++.-+++|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred cceEEEeecccHHHhhccCcCCcEEEEEEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 4799999999999999999999999999999864 223334799999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-------------------------------
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL------------------------------- 129 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------------------------------- 129 (194)
++.++++|...|+...|.++|.++++++.||+|++|+..+.+++.+++.
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 9999999999999999999999999999999999999887654322110
Q ss_pred -------------------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 130 -------------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 130 -------------------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.--+.+++|.|.++++.++|+.++.|...++..+. ...-|...+-.++-+|....+++-
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~--tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER--TLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee--eeecccccccccccCcccchhhhh
Confidence 00256778899999999999999999998887432 223466667888888877776653
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=157.28 Aligned_cols=190 Identities=18% Similarity=0.262 Sum_probs=155.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+++.|+|....|++|++|++|++||+..... ...........++.++.|+|.|.+|+.|.....+++||+++-+
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa---KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA---KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHH---HHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 5799999999999999999999999999976532 2223334566789999999999999999999999999999887
Q ss_pred ceEE---eccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----CCeEEEEecCCCEEEEEcCCCcE
Q 039044 81 QPVT---VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----PDRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 ~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~v 152 (194)
+... -.+|.+.|+++.+++.+++.++++.||.|++||--+.+++.++.. .+.+..|..+++++++.+.|..+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 7543 256899999999999999999999999999999998888877643 22456788899999999999999
Q ss_pred EEEECCCCCeeeEE-----------------------------------------------eeCCCcceeeEEEEecCCC
Q 039044 153 VVFNLQNPQTEFKR-----------------------------------------------INSPLKYQTRCVAAFPDQQ 185 (194)
Q Consensus 153 ~~~d~~~~~~~~~~-----------------------------------------------~~~~~~~~v~~i~~~p~~~ 185 (194)
++|.+.++...... ...+|.+.++.+.-+|.+.
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 99998865432111 1234667788888888888
Q ss_pred eeEEEEee
Q 039044 186 GFLVCIHL 193 (194)
Q Consensus 186 ~l~~~~~~ 193 (194)
.+++|+..
T Consensus 410 ~FmTcsdD 417 (430)
T KOG0640|consen 410 AFMTCSDD 417 (430)
T ss_pred ceeeeccc
Confidence 88888754
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.8e-26 Score=151.82 Aligned_cols=190 Identities=20% Similarity=0.233 Sum_probs=154.4
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccccc-------------------------------------ccccc
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVAS-------------------------------------VPKAS 43 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------------------------------------~~~~~ 43 (194)
++|..+.|.+|++.+++++.|.+++.||+++++..... .....
T Consensus 91 gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 91 GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 47888999999999999999999999998876421000 00011
Q ss_pred cCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-
Q 039044 44 ISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN- 122 (194)
Q Consensus 44 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~- 122 (194)
...+-+++++.|..++..+.+|+-|+.|++||++.+.....+.+|..+|+.+..+|+|.++++-+.|.++++||+|...
T Consensus 171 ~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 171 FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred cccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 1224567889999889999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ---ceeEEecCC-------eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 123 ---PVHTQQLPD-------RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 123 ---~~~~~~~~~-------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++..+..+. -..+++|+++.+.+|+.|..+++||..... +.....+|.+.|++++|+|....+.+|+.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc--EEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence 244444332 367899999999999999999999988755 34455679999999999999999998763
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=158.82 Aligned_cols=184 Identities=19% Similarity=0.289 Sum_probs=160.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+.+.++|+...+++++.|..|++|...... .+.....|..+|+.+..+|.|.||++++.|+.....|++++..
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-----~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSS-----EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeecccccc-----CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 47889999999999999999999999988764 3667778999999999999999999999999999999999988
Q ss_pred eEEecc--CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 82 PVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 82 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
+..... ..-.+++.+|+|||.+|.+|..|+.|++||+.++..+..+.. +++.++|+.+|-+|++++.|+.|++||
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 766543 234589999999999999999999999999999887766654 567899999999999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+|..+ .++.+.......+.++.|.+.|++|+.+.
T Consensus 418 LRKl~-n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 418 LRKLK-NFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred ehhhc-ccceeeccccccceeEEEcCCCCeEEeec
Confidence 99876 35555555555799999999999998874
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.2e-27 Score=166.07 Aligned_cols=181 Identities=20% Similarity=0.296 Sum_probs=152.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccC-CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|+++.|+++|..|++|..+|.|.|||...... ...... |...|-+++|+ +..+.+|+.++.|..+|++..
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence 4689999999999999999999999999987643 344445 99999999998 678999999999999999988
Q ss_pred CceEE-eccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe---cCCeEEEEecC-CCEEEEEcC--CCcE
Q 039044 80 GQPVT-VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVR-YPLMVVGTA--DRNL 152 (194)
Q Consensus 80 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~~~--dg~v 152 (194)
+.... +.+|...|..++|++++.++++|+.|+.+.|||....++...+. ..+..++|+|- ...||+|+. |+.|
T Consensus 291 ~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 291 QHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred hhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEE
Confidence 77665 88999999999999999999999999999999997777765554 45678899984 467777654 9999
Q ss_pred EEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 153 VVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 153 ~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++||..++... ... .-..+|.++.|+|..+.|+++.
T Consensus 371 ~fwn~~~g~~i-~~v--dtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 371 KFWNTNTGARI-DSV--DTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred EEEEcCCCcEe-ccc--ccCCceeeEEEcCCCCEEEEec
Confidence 99999987642 222 2457899999999999888764
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=7.3e-28 Score=161.83 Aligned_cols=185 Identities=19% Similarity=0.279 Sum_probs=140.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccc--------------------------------------cccccc
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV--------------------------------------ASVPKA 42 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~--------------------------------------~~~~~~ 42 (194)
|+|.|+.|. .+.+++|+.|.+|++||.++++... ......
T Consensus 238 GSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 238 GSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 467888884 5689999999999999998775311 001122
Q ss_pred ccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q 039044 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122 (194)
Q Consensus 43 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 122 (194)
+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.++++.+|...|-|+.+ .++++++|+.|.+|++||+..+.
T Consensus 316 LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH
Confidence 34566777777774 458889999999999999999999999999998888877 67889999999999999999999
Q ss_pred ceeEEecCCe-EEEEecCCCEEEEEcCCCcEEEEECCCCCee-------eEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 123 PVHTQQLPDR-CYALTVRYPLMVVGTADRNLVVFNLQNPQTE-------FKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 123 ~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-------~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
++..++++.. .-++-.+.+.+++|..||+|++||+.....+ .......|.+.|-.+.| |...+++++|.
T Consensus 392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd 468 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD 468 (499)
T ss_pred HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCC
Confidence 8887777642 2234456789999999999999999876544 12223357778888888 46677777664
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=6.8e-27 Score=170.07 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=161.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCc--ccccc-----cccccCCCCCeeEEEEecCCCeEEEecCCCeEEE
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGT--GVASV-----PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKM 73 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 73 (194)
++|.+++.+||++.+++|+.|.+|++||...... ..... ......-...|.|+.++||+++|+.+--|++|++
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 4789999999999999999999999999753211 10000 1122234678999999999999999999999999
Q ss_pred EecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCC
Q 039044 74 WPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg 150 (194)
|-+.+-+....+.+|.-||.+|..+||++.++|||.|++|++|-+.=|.+-+++.. ...++.|.|....+++++.|+
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 99999998889999999999999999999999999999999999988877665544 457899999999999999999
Q ss_pred cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 151 NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
.|+-||-.+.+. ++.+ .+|...|+|++.+|+|.++++++|.
T Consensus 615 kvKqWDg~kFe~-iq~L-~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 615 KVKQWDGEKFEE-IQKL-DGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred eEEeechhhhhh-heee-ccchheeeeeEEcCCCCeEEeccCC
Confidence 999999988764 3334 4688899999999999999999984
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=4e-26 Score=153.68 Aligned_cols=184 Identities=18% Similarity=0.282 Sum_probs=151.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+++.|+.+|.+||+|.-+|.|++|...++.. ...+...-..+.=+.|+|.+..|++|+.||.+-+|.+.++.
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-----~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-----QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCce-----EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 5799999999999999999999999999998853 33333455667889999999999999999999999999987
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec------CC-----------------------
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL------PD----------------------- 131 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------~~----------------------- 131 (194)
..+.+.+|..++++=.|.|+|+.++++..||+|++||+.++++++.... +.
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 8888999999999999999999999999999999999988766544330 00
Q ss_pred ---------------------------------------------------------------------eEEEEecCCCE
Q 039044 132 ---------------------------------------------------------------------RCYALTVRYPL 142 (194)
Q Consensus 132 ---------------------------------------------------------------------~~~~~~~~~~~ 142 (194)
..+.|-+ ..+
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDY 340 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cch
Confidence 0011111 237
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|++++.+|.|+.||.|+++..+. ..+|...|.+++++|+.+.+++++.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~--y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFT--YTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred heeeccCceEEeeeccccceEEE--EecCchheeEEEEcCCCcEEEEecC
Confidence 88899999999999999886544 3468899999999999999998864
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=174.10 Aligned_cols=186 Identities=17% Similarity=0.285 Sum_probs=152.5
Q ss_pred eeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCC
Q 039044 3 VSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.++.|+. +.++||+++..|.|.+||+..... ......+..|+..++++.|++ ..++|++|+.||.|++||++..+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r--nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIR--NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcccc--chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 45677875 468999999999999999987321 123456778999999999998 56789999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCc----eeEEecCCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP----VHTQQLPDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
...++......|++++|+| .+.+|+++.+.|.+++||+|.... +..+.+++.++.|+|++.+||+|+.|++|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 9988888889999999999 678899999999999999998753 34566778899999999999999999999999
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCe-eEEEE
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQG-FLVCI 191 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~-l~~~~ 191 (194)
|+.+.+.... ....-..++.+++|-|+.++ |++|+
T Consensus 248 d~t~~~~~~~-~tInTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 248 DMTDSRAKPK-HTINTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred eccCCCccce-eEEeecceeeeeeeccCccchhhhhh
Confidence 9986543222 22224578999999998765 44443
No 72
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.5e-27 Score=167.69 Aligned_cols=184 Identities=21% Similarity=0.285 Sum_probs=162.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC-C
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-G 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~ 80 (194)
+|.+..|-+-.+.+++|+.|..|++|++++.+ ....+..|.+.|.+++.+|...++++++.|-.|++||.+.+ .
T Consensus 57 PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-----kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 57 PVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-----KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred chhhheeeeccceEEEecCCceEEEEecccce-----eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence 57778888888999999999999999999985 37788899999999999999999999999999999998765 4
Q ss_pred ceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCC--CEEEEEcCCCcEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRY--PLMVVGTADRNLVV 154 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~--~~l~~~~~dg~v~~ 154 (194)
+.+++.+|...|.+++|+| |.+.+++++.|++|++|.+.+..+..+++.+. +++++-+.| ++|++|+.|..++|
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 6678999999999999999 67899999999999999999999888887654 678877644 79999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
||..+.++ .+ ...+|...|..+.|+|.=..+++|++
T Consensus 212 WDyQtk~C-V~-TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 212 WDYQTKSC-VQ-TLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred eecchHHH-HH-HhhcccccceEEEecCCCcEEEEecC
Confidence 99998663 33 34568889999999999999999975
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-27 Score=153.03 Aligned_cols=182 Identities=17% Similarity=0.306 Sum_probs=150.4
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+|.++.|++ .++.+++++.|++|++|+...+.. ..++.+|...|...+|+| ..+.+++++.|+.+++||++..
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCcc-----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 588999999 467888899999999999887743 567889999999999999 6789999999999999999987
Q ss_pred CceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC-ceeEEec---CCeEEEEecCC-CEEEEEcCCCcEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-PVHTQQL---PDRCYALTVRY-PLMVVGTADRNLV 153 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~---~~~~~~~~~~~-~~l~~~~~dg~v~ 153 (194)
.....+..|..++.++.|+. +.+.++|++.|+.|+.||+|+-+ ++.++.. .++.+.++|.. ..|++++.|-+++
T Consensus 181 gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 181 GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 77667899999999999998 67789999999999999999754 5555544 45788899965 5789999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
|||......... ....|..-+..+.|++-....++
T Consensus 261 iw~~~~~ds~~e-~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 261 IWDPERQDSAIE-TVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred ecccccchhhhh-hhhccceEEeccccccccCceee
Confidence 999986554333 33457888999999986444433
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=143.11 Aligned_cols=188 Identities=21% Similarity=0.315 Sum_probs=153.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC----CCeEEEec-CCCeEEEEe
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD----GTTVFSGG-CDKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~d~~i~~~d 75 (194)
++|+|.+|+|+|+++++|+.|.+|++...+...+........+.-|.+.|..++|-.+ +..|++++ .|..|++-|
T Consensus 90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred ccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 5799999999999999999999999998876654333334556678999999999653 34566554 467888889
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec----------CCeEEEEecCCCEEEE
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----------PDRCYALTVRYPLMVV 145 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~ 145 (194)
...|+....+.+|.+.|.++ ++-++-++++|+.|.+|++||+|-..++..+.. .+..+++.|.|+.+++
T Consensus 170 c~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred cCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 99999999999999998776 233778999999999999999998877765432 2357899999999999
Q ss_pred EcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 146 GTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 146 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|-.|....+||++.+.. .+.. .+|...|+|+.|+|...++++|+
T Consensus 249 g~~dssc~lydirg~r~-iq~f-~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRM-IQRF-HPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ccCCCceEEEEeeCCce-eeee-CCCccceeEEEeCCCceEEEEec
Confidence 99999999999998763 3333 56889999999999999999986
No 75
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.8e-25 Score=164.65 Aligned_cols=167 Identities=11% Similarity=0.141 Sum_probs=130.8
Q ss_pred eeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCCC--------ceEEeccC
Q 039044 18 TSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMH 88 (194)
Q Consensus 18 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~ 88 (194)
|+.++.+++|+..... ....+.+|..+|.+++|+|+ +++|++|+.|+.|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~-----~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc-----eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 4557788888876542 24556789999999999996 7899999999999999997642 23457789
Q ss_pred CCcEEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 89 DAPIKEVAWIPEMNL-LATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 89 ~~~v~~~~~~~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
...|.+++|+|++.. +++++.|+.|++||+++++....+.. ...+++|+|+|..|++++.|+.|++||+++++.. .
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~ 203 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-S 203 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-E
Confidence 999999999998875 57889999999999999887655543 4568899999999999999999999999987643 2
Q ss_pred EeeCCCcceee-----EEEEecCCCeeEEEE
Q 039044 166 RINSPLKYQTR-----CVAAFPDQQGFLVCI 191 (194)
Q Consensus 166 ~~~~~~~~~v~-----~i~~~p~~~~l~~~~ 191 (194)
.+ ..|.+.+. ...|++++.+++++.
T Consensus 204 tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 204 SF-HIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred EE-ecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 23 34544332 234568888888754
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-25 Score=148.53 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=149.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC--
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-- 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-- 79 (194)
.|++++.+|-++.+++++.|++|++||++..++ ...+. ...-...+|+|+|-.+|++...+.|++||++.-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----qg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----QGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----ceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC
Confidence 589999999999999999999999999996643 22222 222345799999999999998889999999864
Q ss_pred CceEEec---cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC------eEEEEecCCCEEEEEcCCC
Q 039044 80 GQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD------RCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 80 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg 150 (194)
.+...+. +...+.+.|.|+|+|++++.+...+.+++.|.-.|..+.++.... -..+|.|+++++++|+.||
T Consensus 175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC
Confidence 3444443 346789999999999999999999999999999999887776532 3678999999999999999
Q ss_pred cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 151 NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+|++|+++++.. +.....++..++.++.|+|....++++.
T Consensus 255 ~i~vw~~~tg~~-v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 255 TIHVWNLETGKK-VAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred cEEEEEcCCCcE-eeEecCCCCCCccccccCCceeeeeecC
Confidence 999999998875 4445455788999999999988888764
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=166.26 Aligned_cols=188 Identities=20% Similarity=0.362 Sum_probs=144.4
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCccccccc-ccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVP-KASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.++|.+|+|. .+.+++++.||++|+|+++.......... ....+..-+++.++|+|++++|++|..||.|.+|+..+.
T Consensus 270 ~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 270 ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc
Confidence 4789999996 57899999999999999987653221111 122245568899999999999999999999999997543
Q ss_pred Cc---eEEeccCCC--cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEEe-----cCCeEEEEecCCCEEEEEcC
Q 039044 80 GQ---PVTVAMHDA--PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQ-----LPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 80 ~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~-----~~~~~~~~~~~~~~l~~~~~ 148 (194)
.. ...-.+|.. .|+++.|+++|++|++-+.|+++++||+|+.+ +++... .+...++|+|+.+.|++|+.
T Consensus 350 ~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 350 TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 22 222356776 89999999999999999999999999999865 444432 24568899999999999875
Q ss_pred ------CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 149 ------DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 149 ------dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.|.+.+||..+....++.. . ....|..+.|+|.=..+.+|+
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~-i-~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKID-I-STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEec-C-CCceEEEEeecchhhheeeec
Confidence 5679999999877544333 2 256788899999866666554
No 78
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=156.37 Aligned_cols=179 Identities=20% Similarity=0.311 Sum_probs=157.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|..+++++-..++++++.|+.|+.||++..+ ......+|-..|.|++.+|.-..|++|+.|..+++||+++...
T Consensus 195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-----vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-----VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeeeeecccCceEEEecCCCeeEEEechhhh-----hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 47789999999999999999999999999874 4677889999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+..+.+|..+|..+.+.|-...+++|+.|++|++||++.++....... ..++++++|....+++++.|. ++-|++.
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP 348 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence 999999999999999999778899999999999999999987766544 457889999999999988776 9999998
Q ss_pred CCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 159 NPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
.+... .-..+|..-+++++...|+-++.
T Consensus 349 ~g~f~--~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 349 EGEFL--QNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred ccchh--hccccccceeeeeeeccCceEEE
Confidence 77632 22566888899999988876554
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.1e-27 Score=161.08 Aligned_cols=176 Identities=21% Similarity=0.341 Sum_probs=129.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+|+.+ |...+++|.+|++|++||.++.. ....+.+|.+.|.|+.|. .+.+++|+.|.+|++||.+++++
T Consensus 199 gVYClQY--DD~kiVSGlrDnTikiWD~n~~~-----c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 199 GVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE-----CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ceEEEEe--cchhhhcccccCceEEeccccHH-----HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 5888888 45789999999999999998874 478889999999999996 55999999999999999999987
Q ss_pred eEEeccCCCcEEEEEecC-----------------------------------------CCCEEEEeeCCCeEEEEeCCC
Q 039044 82 PVTVAMHDAPIKEVAWIP-----------------------------------------EMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~-----------------------------------------~~~~l~~~~~d~~v~vwd~~~ 120 (194)
+.++-.|...|..+.|+. +.+++++++.|.+|++|++.+
T Consensus 270 l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred hhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc
Confidence 766666655555555532 223555555555555555555
Q ss_pred CCceeEEecCCeEEEE-ecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 121 PNPVHTQQLPDRCYAL-TVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.+.+.++.++.+.++. --.++++++|++|.+|++||+..+.. ..+..+|..-|+|+.|. .+.+++|
T Consensus 350 ~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--LRvLeGHEeLvRciRFd--~krIVSG 416 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFD--NKRIVSG 416 (499)
T ss_pred eeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--HHHHhchHHhhhheeec--Cceeeec
Confidence 5555555555544433 33677888899999999999988763 34556788889999984 4555554
No 80
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.1e-27 Score=169.12 Aligned_cols=153 Identities=16% Similarity=0.331 Sum_probs=140.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+|++++|+..++|||+.|.+.+||+++.. .....+.+|+..+.|+.|+|..+.++|++.|++|+||.+.+..+
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee
Confidence 5899999999999999999999999999954 45778899999999999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC-e--EEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-R--CYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+.++.+|...|..+.|-.++..|++++.||.+++|++.+.+++.++..+. + .++.++....+++|+.||.|.+|.=.
T Consensus 540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 99999999999999999999999999999999999999999998887653 3 45666788899999999999999644
Q ss_pred C
Q 039044 159 N 159 (194)
Q Consensus 159 ~ 159 (194)
+
T Consensus 620 T 620 (775)
T KOG0319|consen 620 T 620 (775)
T ss_pred c
Confidence 3
No 81
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=154.55 Aligned_cols=187 Identities=21% Similarity=0.248 Sum_probs=159.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC---
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL--- 77 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~--- 77 (194)
++|.+++-+|+|.+|+.|+..|.|++|.+.++. .......|-..|+|+.|+-|+.+|++|+.||.|.+|.+.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence 578999999999999999999999999999995 466678899999999999999999999999999999863
Q ss_pred ------CCCceEEeccCCCcEEEEEecCC--CCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEc
Q 039044 78 ------SGGQPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGT 147 (194)
Q Consensus 78 ------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~ 147 (194)
+.+++..+..|.-+|+++...+. ..+++++|.|.++++||+..+..+.++.. ...+++++|.++.++.|+
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 34567788999999999998774 46899999999999999999998877655 457999999999999999
Q ss_pred CCCcEEEEECCCCCe--e------------eEEeeCCCcc--eeeEEEEecCCCeeEEEEe
Q 039044 148 ADRNLVVFNLQNPQT--E------------FKRINSPLKY--QTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 148 ~dg~v~~~d~~~~~~--~------------~~~~~~~~~~--~v~~i~~~p~~~~l~~~~~ 192 (194)
++|.|.+.++.+... . ......+|.+ +|+|++.+-||..|++|.+
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 999999988765431 0 0112234555 8999999999999999865
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.5e-26 Score=150.50 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=137.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccc---------------------------------------
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPK--------------------------------------- 41 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~--------------------------------------- 41 (194)
+.|++++|+.||+.|++++.|++|++|++.+-.........
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 47999999999999999999999999998753211000000
Q ss_pred ---------------cccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC---------------------------
Q 039044 42 ---------------ASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG--------------------------- 79 (194)
Q Consensus 42 ---------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------------------------- 79 (194)
....|...+..+-....+.+|++++.|..|.+|+++..
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVS 246 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEe
Confidence 00112333444444445667888888888888887521
Q ss_pred ----------------------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC-------CCceeEEe--
Q 039044 80 ----------------------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-------PNPVHTQQ-- 128 (194)
Q Consensus 80 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~-------~~~~~~~~-- 128 (194)
..+..+.+|...|..++|+++...+++.+.||++++||+.- ++.+++..
T Consensus 247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 12335667999999999999999999999999999999752 22222221
Q ss_pred -----cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 129 -----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 129 -----~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.....+.++|.++.|+... ...+++|..++++. +......|...|.+|+|+|+|+++++|..
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~-~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD-YPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc-chhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 2234789999999888766 45699999998764 44556668899999999999999999865
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=160.92 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=147.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|.++++.|.|..|++|+.|-+|++||+...................+|.++.|++.+..|++.+.....+++|-.....
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 48899999999999999999999999998765433333333445567899999999999999998899999999543322
Q ss_pred eE------------EeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCc-eeEE--------ecCCeEEEEecC
Q 039044 82 PV------------TVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNP-VHTQ--------QLPDRCYALTVR 139 (194)
Q Consensus 82 ~~------------~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~~-~~~~--------~~~~~~~~~~~~ 139 (194)
.. .-++|...+++-+|+|. ...+++++.||++++||+.+.+. +..+ ..+...++|+++
T Consensus 249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd 328 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD 328 (641)
T ss_pred eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence 21 22578899999999995 55799999999999999986542 2222 234578899999
Q ss_pred CCEEEEEcCCCcEEEEECCCCC-eeeEEeeCCCcc--eeeEEEEecCCCeeEEE
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQ-TEFKRINSPLKY--QTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~~--~v~~i~~~p~~~~l~~~ 190 (194)
++.|++|+.||.|.+|+.++.. .+...+...|.. .|+||+||+||++|++=
T Consensus 329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 9999999999999999986543 233334455655 89999999999999863
No 84
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=7.6e-27 Score=163.49 Aligned_cols=184 Identities=14% Similarity=0.164 Sum_probs=159.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
-|.++.+.|||+.|++|++-.++.|||+..... .....+.........++.+||.+..+++..||.|.|||+.+...
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTp---rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCc---chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 478899999999999999999999999987654 33344445556688899999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
++.|++|...+.||..+++|..|.+|+.|++|+.||+|++..+..+.. .+.++..+|.+.+++.|.+++.+-+.....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 999999999999999999999999999999999999999987765544 556777889999999999999999988776
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.++ .....|...|.++.|.+.|+++++..
T Consensus 624 p~k---yqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 624 PEK---YQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ccc---eeecccccEEEEEEecccCceeeecC
Confidence 553 33345888999999999999998753
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.4e-25 Score=147.58 Aligned_cols=182 Identities=14% Similarity=0.215 Sum_probs=145.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCC--eEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT--TVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~ 78 (194)
++|++++. ++.++++|+.|-+|+|||+.... ....+..|.+.|+++.|.+... .|++|+.||.|.+|+...
T Consensus 44 ~sitavAV--s~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 44 GSITALAV--SGPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cceeEEEe--cceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 46888888 48999999999999999998874 3567778999999999999765 899999999999999999
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----------------------------
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----------------------------- 129 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------------------------- 129 (194)
-..+..+++|..+|+.++.+|.+++.++.+.|+.+++||+-.++.-.....
T Consensus 117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~ 196 (362)
T KOG0294|consen 117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQL 196 (362)
T ss_pred eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEec
Confidence 989999999999999999999999999999999999999876653211111
Q ss_pred -----------CCeEEEEec-CCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEE--ecCCCeeEEEE
Q 039044 130 -----------PDRCYALTV-RYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAA--FPDQQGFLVCI 191 (194)
Q Consensus 130 -----------~~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~l~~~~ 191 (194)
+.+.++..+ ++..+++|..|+.|.+||..+... ......|..+|..+.+ .|++.+|++++
T Consensus 197 d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~--~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 197 DNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTP--LTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred ccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCcc--ceeeecchhheeeeEEEecCCceEEEEec
Confidence 111222222 456889999999999999987443 2334568999999985 46677777754
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.5e-26 Score=156.49 Aligned_cols=191 Identities=19% Similarity=0.353 Sum_probs=149.9
Q ss_pred CCeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcc-----cccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEE
Q 039044 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTG-----VASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKM 73 (194)
Q Consensus 1 ~~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~ 73 (194)
+.|+.+.+.|+. ..+|+.+..+.+.|||....... .......+.+|...-.+++|++.. -.+++++.|+.|++
T Consensus 125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~l 204 (422)
T KOG0264|consen 125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICL 204 (422)
T ss_pred ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEE
Confidence 467888888965 67778888999999998764321 112223567888888899999944 47899999999999
Q ss_pred EecCCCCc-------eEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCC--CCceeE---EecCCeEEEEecC-
Q 039044 74 WPLLSGGQ-------PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ--PNPVHT---QQLPDRCYALTVR- 139 (194)
Q Consensus 74 ~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~--~~~~~~---~~~~~~~~~~~~~- 139 (194)
||+..... ...+.+|...|..++|++ +...|+++++|+.+.|||+|+ .++.+. +..+..+++|+|.
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 99975433 345789999999999999 567899999999999999995 333333 3445689999995
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+..||+|+.|++|.+||+|+...+...+ ..|+..|.++.|+|....+++++.
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL~~~lh~~-e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNLNKPLHTF-EGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CceEEeccCCCcEEEeechhcccCceec-cCCCcceEEEEeCCCCCceeEecc
Confidence 4678889999999999999998766555 568999999999999877766553
No 87
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=166.54 Aligned_cols=183 Identities=21% Similarity=0.358 Sum_probs=148.3
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.|+++.|++. ..+|++|+.||+|++||++.... .....+....|..++|+| .+..|+++.+.|.+++||++..
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccc-----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 5789999995 57899999999999999998753 455566888999999999 6789999999999999999986
Q ss_pred Cc-eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeEEe--cCCeEEEEecCCCE-EEEEcC--CCc
Q 039044 80 GQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQQ--LPDRCYALTVRYPL-MVVGTA--DRN 151 (194)
Q Consensus 80 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~--~~~~~~~~~~~~~~-l~~~~~--dg~ 151 (194)
.. ...+.+|.++|.++.|+|++.+|||||.|+.|+|||+...+. ++++. .+..++.|-|..++ |++++. |-.
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS 289 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence 54 556889999999999999999999999999999999986553 34443 35678899997664 666654 778
Q ss_pred EEEEECCCCCeeeEEeeCCCcceeeEEEEec-CCCeeEEE
Q 039044 152 LVVFNLQNPQTEFKRINSPLKYQTRCVAAFP-DQQGFLVC 190 (194)
Q Consensus 152 v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~ 190 (194)
|+|||++.+-.|+..+. .|...++.++|.. |...+.+|
T Consensus 290 V~VWDvrRPYIP~~t~~-eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 290 VHVWDVRRPYIPYATFL-EHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred EEEEeeccccccceeee-ccCccccceeccCCCceeeEee
Confidence 99999998877766664 4778889999865 33344444
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.8e-26 Score=166.18 Aligned_cols=183 Identities=16% Similarity=0.249 Sum_probs=143.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|.++.|+.+ .+|++++.|.+||||++....+ .....|.+.|+|++|+| |.++|++|+-||+|+||++...
T Consensus 370 ~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 370 ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred hhheecccccC-CeeEeccccccEEeecCCCcce------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 36889999964 6899999999999999987754 45557999999999999 8899999999999999999875
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----------CCeEEEEecCC-CEEEEEc
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----------PDRCYALTVRY-PLMVVGT 147 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~l~~~~ 147 (194)
+.+. +..-..-|++++|.|+|++.+.|+.+|.+++|+.+..+....... .++.+.+.|.. ..+++.+
T Consensus 443 ~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 443 KVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred eeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec
Confidence 5544 444558899999999999999999999999999987665433221 24567777644 4688888
Q ss_pred CCCcEEEEECCCCCeeeEEeeCC-CcceeeEEEEecCCCeeEEEEe
Q 039044 148 ADRNLVVFNLQNPQTEFKRINSP-LKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 148 ~dg~v~~~d~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|..|+|||++..... .++... ....-....|+.||++++++++
T Consensus 522 nDSrIRI~d~~~~~lv-~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 522 NDSRIRIYDGRDKDLV-HKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred CCCceEEEeccchhhh-hhhcccccCCcceeeeEccCCCEEEEeec
Confidence 9999999999665432 222211 1223467889999999999975
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.6e-25 Score=150.53 Aligned_cols=189 Identities=23% Similarity=0.358 Sum_probs=152.3
Q ss_pred CCeeeEEEcCC---CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 1 DSVSSLCFSPK---ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 1 ~~v~~~~~~p~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
++|.+++|.-. ...|++++.|.++++|..+.+.... .......+|...|.++...+++.++++|+.|..+.+|+..
T Consensus 145 ~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 145 GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 35666776432 3469999999999999998775422 1223344999999999999999999999999999999932
Q ss_pred C-------------------------CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC--
Q 039044 78 S-------------------------GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-- 130 (194)
Q Consensus 78 ~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-- 130 (194)
. +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++....+...+
T Consensus 224 ~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks 302 (423)
T KOG0313|consen 224 TDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS 302 (423)
T ss_pred CCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc
Confidence 1 234567789999999999998 568899999999999999999988777654
Q ss_pred CeEEEEecCCCEEEEEcCCCcEEEEECCCCCee-eEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 131 DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTE-FKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
-.++..+|....|++|+.|..+++||.|++... ......+|++.|.++.|+|...+++++.
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 468888899999999999999999999987543 2334467999999999999876655544
No 90
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=142.83 Aligned_cols=182 Identities=15% Similarity=0.238 Sum_probs=149.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+.++|+.+...+++|+.|.++++||.+.... .+.+.+....+.|.++... +..|++|+.||+++.||++.|..
T Consensus 103 qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 103 QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---EPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred eeeEEEecCcceEEEeccccceeEEEEcccCCC---CccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee
Confidence 589999999999999999999999999988754 4456667778889888886 56899999999999999999887
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe-----EEEEecCCCEEEEEcCCCcEEEEE
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-----CYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
...+. ..+|+++.|+++++..+.++.|+++++.|-.+++.+...+.+.+ ..++......+++|++||.|++||
T Consensus 178 ~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 178 SSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 65554 45799999999999999999999999999999999888776542 456677778999999999999999
Q ss_pred CCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 157 LQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+..... ...+..+..--+.+++++|....++++.
T Consensus 256 Lvd~~~-~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 256 LVDETQ-ISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ecccee-eeeeccCCceeEEeeecccCccceeEec
Confidence 988664 3333332223379999999876666553
No 91
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=149.43 Aligned_cols=184 Identities=16% Similarity=0.253 Sum_probs=145.0
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
..|+.|++.|.+||+|+.||.|.|||+.+.. ....+.+|..+|++++|+++|+.|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 4689999999999999999999999999874 36677899999999999999999999999999999999988765
Q ss_pred EEeccCCCcE-----------------------------------------------EEEEecCCCCEEEEeeCCCeEEE
Q 039044 83 VTVAMHDAPI-----------------------------------------------KEVAWIPEMNLLATGSWDKTLKY 115 (194)
Q Consensus 83 ~~~~~~~~~v-----------------------------------------------~~~~~~~~~~~l~~~~~d~~v~v 115 (194)
..++- ..+| .+..|.+.|+++++|...|.+.+
T Consensus 101 ~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 101 KRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred eEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 54421 1111 11235667899999999999999
Q ss_pred EeCCCCCceeEEecC----CeEEEEecCCCEEEEEcCCCcEEEEECCCCCee---------eEEeeCCCcceeeEEEEec
Q 039044 116 WDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTE---------FKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 116 wd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~---------~~~~~~~~~~~v~~i~~~p 182 (194)
+|..+.+++..++.. .+.+.++..|++++.-+.|..|+.|+++....+ .+....-.+.+-.++.|+.
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 999999988777643 467889999999999999999999998732111 0000011233457889999
Q ss_pred CCCeeEEEEe
Q 039044 183 DQQGFLVCIH 192 (194)
Q Consensus 183 ~~~~l~~~~~ 192 (194)
+|.++++++.
T Consensus 260 dgeYv~a~s~ 269 (405)
T KOG1273|consen 260 DGEYVCAGSA 269 (405)
T ss_pred CccEEEeccc
Confidence 9999998763
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-25 Score=157.71 Aligned_cols=183 Identities=22% Similarity=0.353 Sum_probs=155.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|-+++|+ +..+.+|+.|+.|..+|++.... ......+|...|..++|++|++++++|+.|+.+.|||....++
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQH----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchh----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 47889997 67899999999999999988753 2224778999999999999999999999999999999988889
Q ss_pred eEEeccCCCcEEEEEecC-CCCEEEEee--CCCeEEEEeCCCCCceeEEecC--CeEEEEecCCCEEEEE--cCCCcEEE
Q 039044 82 PVTVAMHDAPIKEVAWIP-EMNLLATGS--WDKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVG--TADRNLVV 154 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~--~~dg~v~~ 154 (194)
+..+..|...|.+++|+| ....||+|+ .|+.|++||..+++.+...... +..+.|++..+-++++ ..+..|.|
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 999999999999999999 567888875 5999999999999998887654 4577888888666664 44778999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|+..+.+. .....+|..+|..++++|||..+++|..
T Consensus 416 w~~ps~~~--~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 416 WKYPSMKL--VAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred Eeccccce--eeeecCCcceeEEEEECCCCCEEEEecc
Confidence 99998653 3344579999999999999999999864
No 93
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=6.2e-25 Score=148.72 Aligned_cols=187 Identities=20% Similarity=0.362 Sum_probs=149.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCC--------------------cccccccccccCCCCCeeEEEEecCCCe
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG--------------------TGVASVPKASISHDHPVLCSTWKDDGTT 61 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~--------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 61 (194)
+|-+++..+++..+++|+.|..|.+|+..... .........+.+|..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 68899999999999999999999999932211 011122345678999999999997 678
Q ss_pred EEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeEEecC---CeEEE
Q 039044 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VHTQQLP---DRCYA 135 (194)
Q Consensus 62 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~---~~~~~ 135 (194)
+++++.|.+|+.||+.++..+.++. .+..++++..+|..++|++|+.|..+++||.|++.- .+++..+ +..+.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 9999999999999999999988876 467899999999999999999999999999998642 2333333 35788
Q ss_pred EecCCC-EEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 136 LTVRYP-LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 136 ~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++|... .|++|+.|+++++||+|+...+...+ ..|...|.++.|. ++.++++|..
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGA 408 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccC
Confidence 898665 57889999999999999987554444 5688999999996 4556777643
No 94
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.4e-24 Score=148.98 Aligned_cols=184 Identities=16% Similarity=0.262 Sum_probs=147.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|.+++.+||+++|++|+.|..|.||+..+.+. ...+.+|.+.|.+++|......+++++.|..|++|+++....
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~eh-----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEH-----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccch-----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 578999999999999999999999999998753 556789999999999998888889999999999998753211
Q ss_pred -----------------------------------------eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 82 -----------------------------------------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 82 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
...+.++.+.+.|++|-.+ ..+++|+++|.|.+|++.+
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecc
Confidence 1234556677888888744 6789999999999999999
Q ss_pred CCceeEEecC---------------CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEE-eeCCCcceeeEEEEecCC
Q 039044 121 PNPVHTQQLP---------------DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKR-INSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 121 ~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~~~v~~i~~~p~~ 184 (194)
.+++.....+ .+.++..|....+++|+.+|.|++|-+..+...+.. ...+..+.|++++|+++|
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 9888765431 246788889999999999999999999887432222 122467889999999999
Q ss_pred CeeEEEE
Q 039044 185 QGFLVCI 191 (194)
Q Consensus 185 ~~l~~~~ 191 (194)
+.+++|.
T Consensus 438 k~ivagi 444 (479)
T KOG0299|consen 438 KRIVAGI 444 (479)
T ss_pred CEEEEec
Confidence 9988875
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.4e-26 Score=153.63 Aligned_cols=183 Identities=22% Similarity=0.301 Sum_probs=149.3
Q ss_pred CCeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC-
Q 039044 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS- 78 (194)
Q Consensus 1 ~~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~- 78 (194)
|.|.|++=+|.. ..+++|+.||.|++||+.... ....+..|.+.|..+++.. ..+++++.|.+|+.|.++.
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC
Confidence 468899999976 789999999999999998874 3677889999999999986 6788888898888886432
Q ss_pred -------------------------------------CCceEEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCC
Q 039044 79 -------------------------------------GGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 79 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~ 120 (194)
..++..+......|.++.|+|- ...|++++.|+.|.+||+|+
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 1222333333456788888884 45788888999999999999
Q ss_pred CCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 121 PNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..+++.... ..+.++|+|..-.+.++++|..++.||++..+.+.... ..|...|.++.|+|.|+.+++|+
T Consensus 220 ~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~-~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 220 ASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH-KDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred CCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh-cccceeEEEeccCCCcchhcccc
Confidence 999887654 45789999977788999999999999999988765544 56889999999999999999986
No 96
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.94 E-value=1.1e-24 Score=148.41 Aligned_cols=193 Identities=17% Similarity=0.246 Sum_probs=151.9
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCc--ccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEec
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGT--GVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~ 76 (194)
++|..++|+| +...||+|++|.+|.+|.+..+.. ........+.+|...|--++|+|. .+.|++++.|+.|.+|++
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 4688999999 568899999999999999987643 222345677899999999999994 468889999999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC----CeEEEEecCCCEEEEEc---CC
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGT---AD 149 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~---~d 149 (194)
.+++.+.++. |...|.++.|+.+|.+|++.+.|+.|+|||.|+++.+.+-..+ .....|--++..+-+|. ++
T Consensus 162 ~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 162 GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 9999998888 9999999999999999999999999999999999988776332 13455666777555554 37
Q ss_pred CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEeeC
Q 039044 150 RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHLF 194 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~~ 194 (194)
.++-+||..+.+.+...........|.=--+.||...+..|..|+
T Consensus 241 Rq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred cceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC
Confidence 789999998877664433333334444445677777777776553
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.3e-25 Score=156.79 Aligned_cols=185 Identities=16% Similarity=0.255 Sum_probs=154.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEE-ecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW-KDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|++++...+++.|++++.|.+|++|+...... .....+..|.+.|.|+++ .++...+++|+.|+.|.+||++++.
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEEEeecccCcc---hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 467777888899999999999999999887642 345677789999999999 7888999999999999999999773
Q ss_pred c--e--------EEec-cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEE
Q 039044 81 Q--P--------VTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVG 146 (194)
Q Consensus 81 ~--~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 146 (194)
. + ..+. ++...|++++.++.|..+++|+..+.+++||.++.+.+..+.++ ++++.++++|..++++
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~ 231 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA 231 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec
Confidence 2 1 1223 78889999999999999999999999999999999877666654 5788999999999999
Q ss_pred cCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 147 TADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++||+|++||+........ . ..|+..|+++..+|+=+++.+|.
T Consensus 232 sSDgtIrlWdLgqQrCl~T-~-~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 232 SSDGTIRLWDLGQQRCLAT-Y-IVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred CCCceEEeeeccccceeee-E-EeccCceEEEeeCCCcceEEecC
Confidence 9999999999997665433 3 34667799999999888877764
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=150.51 Aligned_cols=188 Identities=13% Similarity=0.212 Sum_probs=150.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCC-eEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT-TVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|+++.|+|....+++++.|++++||.++.... .......-...||.+.+|.|+|+ .+++++.....+.||+.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N---~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN---PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccC---hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 4699999999999999999999999999987654 22333444567899999999998 8899999999999998764
Q ss_pred Cc-------------eEEe-----------cc--------------------CCCcEEEEEecCCCCEEEEeeCCCeEEE
Q 039044 80 GQ-------------PVTV-----------AM--------------------HDAPIKEVAWIPEMNLLATGSWDKTLKY 115 (194)
Q Consensus 80 ~~-------------~~~~-----------~~--------------------~~~~v~~~~~~~~~~~l~~~~~d~~v~v 115 (194)
+. +..| .+ .++.|..++|+.+++.|+.++.+|.|.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 21 1111 11 2456788999999999999999999999
Q ss_pred EeCCCCCceeEEec----CCeEEEEecCCCEEEEEcCCCcEEEEECCCC-----CeeeEEeeCCCcceeeEEEEecCCCe
Q 039044 116 WDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP-----QTEFKRINSPLKYQTRCVAAFPDQQG 186 (194)
Q Consensus 116 wd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----~~~~~~~~~~~~~~v~~i~~~p~~~~ 186 (194)
||+++..+++.+.. +...++.++++.++++|+..|.|.|||.++- .+|.+.+ ......|++++|+||.+.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-hhhheeeeeeeeCcchhh
Confidence 99999988888764 3468889999999999999999999997642 1233322 335677999999999999
Q ss_pred eEEEEe
Q 039044 187 FLVCIH 192 (194)
Q Consensus 187 l~~~~~ 192 (194)
|+.|+.
T Consensus 450 LAiaS~ 455 (514)
T KOG2055|consen 450 LAIASR 455 (514)
T ss_pred hhhhhh
Confidence 998864
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=8e-25 Score=159.45 Aligned_cols=154 Identities=23% Similarity=0.381 Sum_probs=143.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|.|++++||+++|+++--|.++++|-+++-+ ....+.+|.-||.||..+||++.++||+.|..|++|-++=|.
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 468999999999999999999999999999873 467788999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
+-..+-+|...|.++.|.|....++++|.|+.++-||-.+-+.+..+..+ ..+++++|+|.++++++.|.+|++|..
T Consensus 584 CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 584 CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 99999999999999999999999999999999999999988888777664 478999999999999999999999987
Q ss_pred CC
Q 039044 158 QN 159 (194)
Q Consensus 158 ~~ 159 (194)
..
T Consensus 664 td 665 (888)
T KOG0306|consen 664 TD 665 (888)
T ss_pred cC
Confidence 54
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=7.9e-24 Score=137.70 Aligned_cols=181 Identities=14% Similarity=0.199 Sum_probs=150.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-----CCeEEEEe
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-----DKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~d 75 (194)
++|.|+..+-+.+.+++|+.|.++++||+++++. ........++..+.|+++|++++.... .+.|.++|
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd 126 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD 126 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcE------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence 5799999999999999999999999999999863 333346778999999999998887654 36799999
Q ss_pred cC-------CCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE----EecCCeEEEEecCCCEEE
Q 039044 76 LL-------SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT----QQLPDRCYALTVRYPLMV 144 (194)
Q Consensus 76 ~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 144 (194)
++ ..++...+..+...++.+-|.|.++.|++|..||.|.+||.++++.+.. +....+.+.++++..+++
T Consensus 127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred ccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEE
Confidence 98 3455677777889999999999999999999999999999999865432 334567899999999999
Q ss_pred EEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 145 VGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 145 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+++.|.+-++||.++.+.. +... ...+|++.+++|...+++.|
T Consensus 207 T~s~Dttakl~D~~tl~v~-Kty~--te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVL-KTYT--TERPVNTAAISPLLDHVILG 249 (327)
T ss_pred ecccCccceeeeccceeeE-EEee--ecccccceecccccceEEec
Confidence 9999999999999997743 3332 45689999999988887765
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=4.3e-26 Score=155.77 Aligned_cols=186 Identities=15% Similarity=0.275 Sum_probs=161.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|..+.|-++...|++|+.|..|++|+...... .....+.+..++|+.+.|.++++.+++++.|+.+++|++.+..
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchh---hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 4688999999989999999999999999887653 4456677888999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
...++.+|...|+++.|......+++++.|.+|+.||+.+..+.++......+..+...+..+++|..|++|++||.++.
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCC
Confidence 99999999999999999887777999999999999999998888887766666666666788999999999999999987
Q ss_pred CeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 161 QTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 161 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
... ..+ +..+.|+++..+++|..+++++.
T Consensus 333 ~~~-~sv--~~gg~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 333 DKT-RSV--PLGGRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred cee-eEe--ecCcceeeEeeccCCeEEeeecC
Confidence 642 222 34568999999999999998864
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4e-25 Score=142.00 Aligned_cols=188 Identities=21% Similarity=0.277 Sum_probs=148.8
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
|.++...--|++|||++.|++|+||..+.... ......+.+|.+|+..++|.. -|.+|++++.||+|.||.-.++.
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence 44455555689999999999999999987653 134567889999999999965 78999999999999999987774
Q ss_pred --ceEEeccCCCcEEEEEecCC--CCEEEEeeCCCeEEEEeCCCC-C-----ceeEEecCCeEEEEecC---C-------
Q 039044 81 --QPVTVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQP-N-----PVHTQQLPDRCYALTVR---Y------- 140 (194)
Q Consensus 81 --~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~vwd~~~~-~-----~~~~~~~~~~~~~~~~~---~------- 140 (194)
...+...|...|++++|.|. |-.|++++.||.|.|.+.+.. . ....+....+++++.|. |
T Consensus 92 w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 92 WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP 171 (299)
T ss_pred hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence 23456789999999999995 668999999999999988764 2 23344556678888875 3
Q ss_pred ----CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC----CeeEEEEe
Q 039044 141 ----PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ----QGFLVCIH 192 (194)
Q Consensus 141 ----~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~----~~l~~~~~ 192 (194)
+.|++|+.|..|+||+..+.+-........|...|+.++|.|.- ..|++|++
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 46999999999999999886543444456799999999999964 45666654
No 103
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.3e-23 Score=138.80 Aligned_cols=181 Identities=18% Similarity=0.239 Sum_probs=141.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.++.+++|.+ ...+++|+-||.|+.+|++++. ......|..++.|+.+++....+++|+.|+.|++||.+...
T Consensus 55 ~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 55 APLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred CceeeeeccC-CceEEEeccCceEEEEEecCCc------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 3788999997 5678999999999999999885 36667899999999999988899999999999999998755
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-----------------------------------
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----------------------------------- 125 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~----------------------------------- 125 (194)
....+. ....|.++.. .++.|++|..+..+.+||+|+.....
T Consensus 128 ~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 128 VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred cccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 555554 3347777766 56688888888899999887542100
Q ss_pred -------------------------EEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEE
Q 039044 126 -------------------------TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAA 180 (194)
Q Consensus 126 -------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~ 180 (194)
.+-.+++.++|+|-...+++|+.||.|.+||+.+.+.. ..+ ......|.+++|
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~q~-~~~~~SI~slsf 282 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL-KQL-AKYETSISSLSF 282 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh-hhc-cCCCCceEEEEe
Confidence 00113357788888889999999999999999876642 222 234567999999
Q ss_pred ecCCCeeEEEEee
Q 039044 181 FPDQQGFLVCIHL 193 (194)
Q Consensus 181 ~p~~~~l~~~~~~ 193 (194)
+.+|..||+++.+
T Consensus 283 s~dG~~LAia~sy 295 (323)
T KOG1036|consen 283 SMDGSLLAIASSY 295 (323)
T ss_pred ccCCCeEEEEech
Confidence 9999999998754
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=5.6e-25 Score=154.26 Aligned_cols=186 Identities=16% Similarity=0.247 Sum_probs=151.1
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
|.++.++...+.++||++ |.|+|||+....................|.++...|||+.|++|++-.++.|||+....+.
T Consensus 422 VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr 500 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR 500 (705)
T ss_pred EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc
Confidence 567778888899999985 6799999987654222222223345678999999999999999999999999999876654
Q ss_pred E--EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 83 V--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 83 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
. ++..-....++++.+||.+..+++..||.|.|||+++...+..++++ ..|+.++++|..|-+|+.|.+|+.||+
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 3 23322345678899999999999999999999999999988888764 579999999999999999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.+.++.+ .....+|.++-.+|+++++++|++
T Consensus 581 regrqlqq---hdF~SQIfSLg~cP~~dWlavGMe 612 (705)
T KOG0639|consen 581 REGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGME 612 (705)
T ss_pred hhhhhhhh---hhhhhhheecccCCCccceeeecc
Confidence 99875433 235678999999999999999975
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=8.2e-24 Score=139.59 Aligned_cols=190 Identities=16% Similarity=0.218 Sum_probs=150.2
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCccc---------c-cccccccCCCCCeeEEEEec-CCCeEEEecCC
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGV---------A-SVPKASISHDHPVLCSTWKD-DGTTVFSGGCD 68 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~---------~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 68 (194)
+.|+++...| .|+++++|+.||.|.+||+....... . .......+|+-.|..+.|.| |.-++.+++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 5788999988 58999999999999999997643100 0 01122345778899999999 67789999999
Q ss_pred CeEEEEecCCCCceEEeccCCCcEEEEEecC---CCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCE
Q 039044 69 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP---EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPL 142 (194)
Q Consensus 69 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~ 142 (194)
.++++||.++.+....|. .++.|++-+++| ..-++++|.++-.|++.|+.++...+.+.++ +..+.|+|..++
T Consensus 124 htlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred ceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCcee
Confidence 999999999888877776 578899999998 3457888888999999999999988887764 457788888776
Q ss_pred -EEEEcCCCcEEEEECCCCCeeeE-------------EeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 143 -MVVGTADRNLVVFNLQNPQTEFK-------------RINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 143 -l~~~~~dg~v~~~d~~~~~~~~~-------------~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|++|+.||.|++||+|.....+. .....|.+.+..++|..++++++++.
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 67899999999999986532222 22345778899999999999988763
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.5e-23 Score=130.30 Aligned_cols=189 Identities=16% Similarity=0.247 Sum_probs=144.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCC------ccc----ccccccccCCCCCeeEEEEecCCCeEEEecCCCeE
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG------TGV----ASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQV 71 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~------~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 71 (194)
+|.+++|+|.|.+.++|+...+.++..+..-. ... .........|.+.|.|.+|+|+|++|++|+.|..|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 58899999999999999999999987654311 100 01122345688999999999999999999999999
Q ss_pred EEEecCCCCc-----eEEeccCCCcEEEEEecC----CCCEEEEeeC-CCeEEEEeCCCCCceeEEecCCe-EE-EEecC
Q 039044 72 KMWPLLSGGQ-----PVTVAMHDAPIKEVAWIP----EMNLLATGSW-DKTLKYWDTRQPNPVHTQQLPDR-CY-ALTVR 139 (194)
Q Consensus 72 ~~~d~~~~~~-----~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~~~~~-~~-~~~~~ 139 (194)
++...+...+ -.++.-|.+.|+.++|-. .+.+|++++. |..|++-|...++..+.+..+.- .+ -++++
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn 193 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN 193 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec
Confidence 9987654322 346778999999999965 3557777653 67888889999999888876542 33 46789
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeeeEEee-CC-----CcceeeEEEEecCCCeeEEEE
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQTEFKRIN-SP-----LKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~-----~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+-.+++|+.|.+|++||++-+... ..+. .. ....|..++..|.|+.|++|-
T Consensus 194 ~~m~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 194 GAMFASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcEEEccCCCceEEEEeeecccee-eeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 999999999999999999976532 2221 11 235789999999999999874
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.7e-23 Score=136.07 Aligned_cols=186 Identities=18% Similarity=0.281 Sum_probs=144.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCC--eEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT--TVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~ 78 (194)
++|.+++|+.||..+++|+.|+.+++||+.++. ......|.++|.++.|-+... .|+||+.|.+|+.||.+.
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCCC------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 479999999999999999999999999999874 467778999999999988655 899999999999999987
Q ss_pred CCceEEecc-----------------------------------------CCCcEEEEEecCCCCEEEEeeCCCeEEEEe
Q 039044 79 GGQPVTVAM-----------------------------------------HDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117 (194)
Q Consensus 79 ~~~~~~~~~-----------------------------------------~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd 117 (194)
..++.++.- -+-++++++..++....+.|+-+|.+.+..
T Consensus 147 ~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 147 SNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred CCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence 654433220 123467777777766667777788877777
Q ss_pred CCCCCce--eEEe------------cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 118 TRQPNPV--HTQQ------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 118 ~~~~~~~--~~~~------------~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+..+.+. .+++ ..++.++|+|.-..|++++.||+..+||-....+. + ....+..+|+|..|+.+
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL-k-~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL-K-TSETHPQPITCCSFNRN 304 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh-h-ccCcCCCccceeEecCC
Confidence 6654221 1111 12357899998889999999999999998765432 2 23457889999999999
Q ss_pred CCeeEEEEeeC
Q 039044 184 QQGFLVCIHLF 194 (194)
Q Consensus 184 ~~~l~~~~~~~ 194 (194)
|.+++.+..++
T Consensus 305 G~ifaYA~gYD 315 (347)
T KOG0647|consen 305 GSIFAYALGYD 315 (347)
T ss_pred CCEEEEEeecc
Confidence 99999987654
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=153.27 Aligned_cols=182 Identities=20% Similarity=0.205 Sum_probs=155.8
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
|.+++. .+..|++|+.+++|.+|.+..+.. ...+....-++.+++++.+|++++.|+.|-.|++.++......
T Consensus 59 v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~-----~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 59 VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE-----DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE 131 (933)
T ss_pred eEEEee--cccceEEeeccceEEEeeCCCCCc-----cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence 444444 456999999999999999988753 3455667889999999999999999999999999999999999
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----------CCeEEEEecCCCEEEEEcCCCc
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----------PDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
..+++|..+|.++.|+|++++|++.+.||.|++||+.++...+++.. ....++|+|++..++..+.|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 99999999999999999999999999999999999998876655432 1246799999888899999999
Q ss_pred EEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 152 LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 152 v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|.+|+..+.+..+......+...+.+++|+|+|+|||++.
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 9999999888766665555556699999999999999875
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.3e-23 Score=135.17 Aligned_cols=188 Identities=18% Similarity=0.230 Sum_probs=147.6
Q ss_pred CCeeeEEEcC--CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC--CCeEEEecCCCeEEEEec
Q 039044 1 DSVSSLCFSP--KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD--GTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 1 ~~v~~~~~~p--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~ 76 (194)
++|..++|.. -|.+||+++.||.|.||.-..+.- ........|...+++++|.|. |-.|++++.||.|.|.+.
T Consensus 57 GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred CCeeEEeecccccCcEeeEeecCceEEEEecCCCch---hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence 5788899954 689999999999999999877632 445566789999999999984 568999999999999998
Q ss_pred CCCC---ceEEeccCCCcEEEEEecCC---C-----------CEEEEeeCCCeEEEEeCCCCCce--eEEe---cCCeEE
Q 039044 77 LSGG---QPVTVAMHDAPIKEVAWIPE---M-----------NLLATGSWDKTLKYWDTRQPNPV--HTQQ---LPDRCY 134 (194)
Q Consensus 77 ~~~~---~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~v~vwd~~~~~~~--~~~~---~~~~~~ 134 (194)
+... .......|.-.|++++|.|. | +.|++++.|+.|+||+..+.+.. ++++ .-.+.+
T Consensus 134 ~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 134 DSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred cCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 7652 23345789999999999984 4 57999999999999999886533 2222 234678
Q ss_pred EEecCC----CEEEEEcCCCcEEEEECCCCCeee-EEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 135 ALTVRY----PLMVVGTADRNLVVFNLQNPQTEF-KRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 135 ~~~~~~----~~l~~~~~dg~v~~~d~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++|.- .+|+++++||++.||..+....+. .++.......+..++|++.|..|+++.
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 888854 579999999999999887432332 233444677899999999999998864
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=141.68 Aligned_cols=187 Identities=17% Similarity=0.317 Sum_probs=140.3
Q ss_pred eeeEEEcC--CCCEEEEeeCCCeEEEEecccCCc-----------ccccccccccCCCCCeeEEEEec-CCCeEEEecCC
Q 039044 3 VSSLCFSP--KANILVATSWDNQVRCWEISRGGT-----------GVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCD 68 (194)
Q Consensus 3 v~~~~~~p--~~~~l~~~~~d~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 68 (194)
++.+...+ +..+.++-+..|.|.||++...-. ........+.+|...-..++|+| ....|++|.--
T Consensus 154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~ 233 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV 233 (440)
T ss_pred cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence 44555555 345667778899999999864311 11233455677888889999999 33358888888
Q ss_pred CeEEEEecCCCCce---EEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCC---ce--eEEecCCeEEEEecC
Q 039044 69 KQVKMWPLLSGGQP---VTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN---PV--HTQQLPDRCYALTVR 139 (194)
Q Consensus 69 ~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~---~~--~~~~~~~~~~~~~~~ 139 (194)
+.|++|...++.-. ..+.+|...|..++|+|. ...|++||.||+|+|||+|.+. .+ +.+...++.++|+..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~ 313 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR 313 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCC
Confidence 99999998886532 346679999999999994 5689999999999999999873 22 333445678888888
Q ss_pred CCEEEEEcCCCcEEEEECCCCCe--eeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
..+|++|+.||+++|||+|+.+. +...+ ..|+.+|++|.|+|.....+.+
T Consensus 314 ~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 314 EPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred cceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEe
Confidence 88999999999999999997543 33333 3489999999999976555444
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-23 Score=153.62 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=148.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
++++++++-+|+++|.|+.|-.|++-++.+... ...+.+|.++|.++.|+|++++|++.+-||.|++||+.++..
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~-----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ-----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccch-----heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 578999999999999999999999999988753 677889999999999999999999999999999999998877
Q ss_pred eEEecc-------C-CCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC-----CeEEEEecCCCEEEEEcC
Q 039044 82 PVTVAM-------H-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-----DRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 82 ~~~~~~-------~-~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 148 (194)
...+.. . ...+..++|+|++..++....|+.|++|+...++....+... ...+.|+|.|+|||+++.
T Consensus 173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 655432 1 345678999999888888888999999999988877665432 357899999999999999
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
+|.|-|||..+... ......|.+++|.|+...+-
T Consensus 253 ~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 253 DGQILVWNVDTHER------HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred CCcEEEEecccchh------ccccceeEEEecCCCCCeeE
Confidence 99999999998321 22456799999999886653
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=149.84 Aligned_cols=162 Identities=18% Similarity=0.311 Sum_probs=139.6
Q ss_pred CCeeeEEE-cCCCCEEEEeeCCCeEEEEecccCCc-----cccccccccc-CCCCCeeEEEEecCCCeEEEecCCCeEEE
Q 039044 1 DSVSSLCF-SPKANILVATSWDNQVRCWEISRGGT-----GVASVPKASI-SHDHPVLCSTWKDDGTTVFSGGCDKQVKM 73 (194)
Q Consensus 1 ~~v~~~~~-~p~~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 73 (194)
|.|.|+++ .++..++|+|+-|+.|.+||++.+.. ........+. ++..+|.+++.++.|..|++|+..+.+++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 46889999 78899999999999999999997632 0011112222 78889999999999999999999999999
Q ss_pred EecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCC
Q 039044 74 WPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg 150 (194)
||.++++.+..+++|...|..+..+++|..+++++.||+|++||++..+++.++..+. -++..+|+-..+++|+.||
T Consensus 198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred eccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999998877654 3456667778999999999
Q ss_pred cEEEEECCCCCe
Q 039044 151 NLVVFNLQNPQT 162 (194)
Q Consensus 151 ~v~~~d~~~~~~ 162 (194)
.|..=|+++...
T Consensus 278 ~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 278 NIYRTDLRNPAK 289 (735)
T ss_pred cEEecccCCchh
Confidence 999999998643
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=142.13 Aligned_cols=186 Identities=23% Similarity=0.356 Sum_probs=139.6
Q ss_pred eeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCCCc
Q 039044 4 SSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 4 ~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+.++|+|-. ..|++|.--+.|++|...++.-.. -...+.+|+..|-.++|+|. ...|++++-||.|+|||++.+..
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v--d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV--DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred eeeecccccccccccCccccceEeeeeccCceee--cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 578999943 458888888899999988854321 23445679999999999994 56899999999999999998832
Q ss_pred --eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC---CceeE---EecCCeEEEEecCC-CEEEEEcCCCcE
Q 039044 82 --PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP---NPVHT---QQLPDRCYALTVRY-PLMVVGTADRNL 152 (194)
Q Consensus 82 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---~~~~~---~~~~~~~~~~~~~~-~~l~~~~~dg~v 152 (194)
-...++|...|+.+.|+....+|++|++||+++|||+|+- +++.. ++.+++++.|+|.. ..+++++.|.+|
T Consensus 293 ~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 293 KAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred cceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 2233789999999999998889999999999999999964 34444 45577899999965 568888889999
Q ss_pred EEEECCCCCe---------------ee-EEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 153 VVFNLQNPQT---------------EF-KRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 153 ~~~d~~~~~~---------------~~-~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.+||+..... +. ..+.......+..+.|++.-..++++.
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence 9999863211 11 111111234578889998766655543
No 114
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=152.74 Aligned_cols=179 Identities=23% Similarity=0.343 Sum_probs=146.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+.|.++++..-+.++++|+.|.++++||+.++.+ ...+.+|...+.++...+ ..+++|+.|.+|++|+++++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence 4688899987789999999999999999988854 677779999999998764 478889999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe-EEEEecCC-CEEEEEcCCCcEEEEECC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYALTVRY-PLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~~dg~v~~~d~~ 158 (194)
.+..+.+|..+|+++..+ +.++++|+.|++|++||++++++++++..+.. ..++..++ ..+++|+.|+.|++||++
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCC
Confidence 999999999999999996 78999999999999999999999999988653 44556666 999999999999999999
Q ss_pred CCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 159 NPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+...... ....|..-+.++.+ .++.|+++.
T Consensus 401 ~~~~c~~-tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 401 TKRKCIH-TLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred chhhhhh-hhcCCccccccccc--ccceeEecc
Confidence 9832222 23345555544443 345555543
No 115
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=2.1e-23 Score=139.10 Aligned_cols=187 Identities=20% Similarity=0.309 Sum_probs=147.3
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCccccccc---ccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCC
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVP---KASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~ 78 (194)
..+++|+|||.+|++|. .+.|++||+....+...... ....+..+.+.|++|+| +.+.++.|+....+-||.-..
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 46899999999999987 56899999954433111111 11234577899999999 556999999999999999888
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCC-ceeEEecCC-----e-EEEEecCCCEEEEEcCCC
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPN-PVHTQQLPD-----R-CYALTVRYPLMVVGTADR 150 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vwd~~~~~-~~~~~~~~~-----~-~~~~~~~~~~l~~~~~dg 150 (194)
..++..+-+|.+.|+.++|.++|+.|++|+. |..|..||+|... ++..+..+. + -+.+.|++++|++|+.+|
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 8899989999999999999999999999876 6799999999754 443333221 2 357778999999999999
Q ss_pred cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 151 NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.|++||+.+...+.. ....++..++.++++|--..+++++
T Consensus 320 ~V~vwdlk~~gn~~s-v~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVS-VTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cEEEEecCCCCCccc-ccccccccccceecCcccceeeecc
Confidence 999999998554333 3345778899999999988888775
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.4e-25 Score=159.66 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=157.5
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
|.++..-..++.+++|+.|-.+-+|.+..... ...+.+|..+|.++.|+++..+|++|+.+|.|++||++.++.+
T Consensus 31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-----i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 31 VGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-----ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hceeeeeccceeeccCCCceeeccccccCCch-----hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 34444444568899999999999999877643 3347899999999999999999999999999999999999999
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+++.+|...+.++.|+|-+.++++++.|..+++||.+...+.+.+..+. .++.|+|+|++++.+++|..+++||+..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a 185 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA 185 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence 9999999999999999999999999999999999999888888887654 5778999999999999999999999987
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++. ......|.+.+.++.|+|..-.++.|++
T Consensus 186 gk~--~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 186 GKL--SKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ccc--ccccccccccccccccCchhhhhccCCC
Confidence 763 3333457888999999998877777654
No 117
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2e-22 Score=148.16 Aligned_cols=178 Identities=19% Similarity=0.283 Sum_probs=148.7
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
+.+..|+ ..++++++.|++|++|+...+. .....+.+|.+.+.++++..-+.++++|+.|.++++||..++++.
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeecccce----EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 4556666 5689999999999999998875 234448899999999999887889999999999999999999999
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC-CeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
..+.+|...|.++...+ .++++|+.|.+|++|++.++..++.+..+ ....++.-++.++++|+.|++|.+||.++++
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhce
Confidence 99999999999998744 57888999999999999999999888743 3344555559999999999999999999765
Q ss_pred eeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 162 TEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 162 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
. .....+|..+|.++.+.+. ..+++|+
T Consensus 363 c--l~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 363 C--LKSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred e--eeeecCCcceEEEEEecCc-ceEEeee
Confidence 3 3444569999999988766 6777665
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.9e-23 Score=141.28 Aligned_cols=178 Identities=20% Similarity=0.358 Sum_probs=141.9
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccc----------------cccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEE
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVA----------------SVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMW 74 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~ 74 (194)
|+++|.|+.|..|.|||+.-...... .......+|+..+..+.|+.. .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999864321000 001112358888889999874 4688999999999999
Q ss_pred ecCCCCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC---ceeEEecCCeEEEEecCCC-EEEEEcCC
Q 039044 75 PLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN---PVHTQQLPDRCYALTVRYP-LMVVGTAD 149 (194)
Q Consensus 75 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~~~-~l~~~~~d 149 (194)
|+.++++...+..|...|.+++|+| ....|++|+.|++|.+.|.|... ...++...+..++|.|... .+++++.|
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 9999999999999999999999999 56789999999999999999532 3455666778899998664 57778889
Q ss_pred CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 150 RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
|+|+-+|+|+...+.-. ...|..+|.++.+++.-..+++.
T Consensus 352 G~v~~~D~R~~~~~vwt-~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWT-LKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred ceEEeeecCCCCCceeE-EEeccCCcceEEecCCCCcceee
Confidence 99999999998755433 45689999999999887765554
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6e-22 Score=131.62 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=140.7
Q ss_pred EEEEeeCCCeEEEEecccCC-------cccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEec
Q 039044 14 ILVATSWDNQVRCWEISRGG-------TGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA 86 (194)
Q Consensus 14 ~l~~~~~d~~i~i~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 86 (194)
.|++|+....|.-+++.... .........+..|.++|++++.+ +.++++|+.|.+|+|||+++...+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 46778887777777765432 11112234566799999999995 7899999999999999999999999999
Q ss_pred cCCCcEEEEEecCCCC--EEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 87 MHDAPIKEVAWIPEMN--LLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 87 ~~~~~v~~~~~~~~~~--~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
.|.+.|+++.|.++.. +|++|++||.|.+|+....+.++.++. .++.++++|.++..++.+.|+.+++||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998654 899999999999999999888777654 46789999999999999999999999998887
Q ss_pred eeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 162 TEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 162 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..+... .+.....+.|+|.|.++++...
T Consensus 161 ~a~v~~---L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 161 VAFVLN---LKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred cceeec---cCCcceeeEEcCCCCEEEEEec
Confidence 544332 2333456999999998887653
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=8.1e-23 Score=141.51 Aligned_cols=190 Identities=12% Similarity=0.156 Sum_probs=146.4
Q ss_pred CCeeeEEEcCCC--CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecC
Q 039044 1 DSVSSLCFSPKA--NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 1 ~~v~~~~~~p~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~ 77 (194)
+.|++++|+|.. +++|+|.+-|+|-+||+...+.. ..-......|..+|.++.|+| +..++++.+.||+|++-|++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 368999999964 68899999999999999633221 122455678999999999999 55789999999999999998
Q ss_pred CCCceEEe--ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc----eeEEecCCeEEEEecCC-CEEEEEcCCC
Q 039044 78 SGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP----VHTQQLPDRCYALTVRY-PLMVVGTADR 150 (194)
Q Consensus 78 ~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~-~~l~~~~~dg 150 (194)
.+.....+ ......+..+.|+.+...++.+..=|...+||+|+... +..++..+..++++|.. .++++++.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 76543333 33456778899998888888888778999999998654 23334466788999954 5789999999
Q ss_pred cEEEEECCCCCeee--EEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 151 NLVVFNLQNPQTEF--KRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 151 ~v~~~d~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++|||+|...... ......|...|.+..|||.+-.|++..
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 99999999754322 133456889999999999887776654
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=7.3e-24 Score=136.87 Aligned_cols=182 Identities=18% Similarity=0.332 Sum_probs=152.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|.+...+.+...-|+++.|-+-++||.-++.. .....|..-|..++|+.|.++|++|+.+..+++||++..+
T Consensus 60 gavw~~~l~~na~~aasaaadftakvw~a~tgde------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 60 GAVWSATLNKNATRAASAAADFTAKVWDAVTGDE------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred cceeeeecCchhhhhhhhcccchhhhhhhhhhhh------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 4677777877778889999999999999888752 3445688899999999999999999999999999998876
Q ss_pred -ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 -QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
+..++.+|.+.|..+.|....+.++++++|++|++||.++++.++++.. +.+++.++++|++|.++. .+.|.+||.
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwda 212 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDA 212 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecc
Confidence 4568899999999999999889999999999999999999999988765 567899999998777665 566999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+... .+... ....|.+.+++|+...+++|-+
T Consensus 213 ksf~~-lKs~k--~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 213 KSFGL-LKSYK--MPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred ccccc-eeecc--CccccccccccCCCceEEecCc
Confidence 98763 33333 3456899999999988777654
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=6.9e-23 Score=147.71 Aligned_cols=160 Identities=19% Similarity=0.323 Sum_probs=133.1
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCc--ccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGT--GVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~ 77 (194)
.|+++.|.| |...||+++.||.|++|.+..+.. ........+..|...|+++.|+| -...|++++.|-+|++||++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 478999999 778999999999999999986543 22233456778999999999999 55689999999999999999
Q ss_pred CCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEEecC----CeEEEEecCCCEEEEEcCC---
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQLP----DRCYALTVRYPLMVVGTAD--- 149 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~----~~~~~~~~~~~~l~~~~~d--- 149 (194)
+++....+.+|.++|.+++|+|+|+.+++.+.||+|++|..++.+ ++.+-+.+ ...+.|..+|+++++.+.|
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S 788 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS 788 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence 999988999999999999999999999999999999999998765 45444433 2467788899998887654
Q ss_pred -CcEEEEECCCCC
Q 039044 150 -RNLVVFNLQNPQ 161 (194)
Q Consensus 150 -g~v~~~d~~~~~ 161 (194)
.+|.+||..+..
T Consensus 789 eRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 789 ERQVQMYDAQTLD 801 (1012)
T ss_pred hhhhhhhhhhhcc
Confidence 458888876543
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.7e-22 Score=138.29 Aligned_cols=186 Identities=23% Similarity=0.302 Sum_probs=148.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccccc-----------cc-ccc-cCCCCCeeEEEEecCCCeEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVAS-----------VP-KAS-ISHDHPVLCSTWKDDGTTVFSGGCD 68 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~-----------~~-~~~-~~~~~~i~~~~~~~~~~~l~~~~~d 68 (194)
+|.+++++|+..+.++++.+++|.-|++.++...... .+ ... ..|...+.+++.++|+++|++|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 5789999999999999999999999999876521000 01 111 3688899999999999999999999
Q ss_pred CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEE
Q 039044 69 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVV 145 (194)
Q Consensus 69 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 145 (194)
..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++..+. ..+.....++.+-+
T Consensus 224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence 999999999999999999999999999998888889999999999999999877776655543 23333445666777
Q ss_pred EcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 146 GTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 146 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+.|+++++|++.... +.+..++.+.+-|++|-.+ .++++|+
T Consensus 304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred ccccceeEEEeccccc---eeeeeCCCCCeeeEEEecc-cceeecc
Confidence 7799999999995533 3344456778999999755 4566665
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5e-22 Score=132.71 Aligned_cols=177 Identities=19% Similarity=0.368 Sum_probs=148.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC-
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG- 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~- 80 (194)
.|.+..|-..++.+++++.|.+..+||+++++ ....+.+|....+-++-+|..+++++.+.|.+.++||.+..-
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-----~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDVETGE-----VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeeeccCc-----eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc
Confidence 46778888889999999999999999999985 477888999999999999999999999999999999998432
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEEe--cCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQ--LPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.+..|++|...|++..|..+ ..++++++|.+|++||+++.. ++.++. .+.+.++++..++.++.-..+..|++||+
T Consensus 349 sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 35578999999999999876 468899999999999999765 555554 45678889988899999999999999999
Q ss_pred CCCCee--eEEeeCCCcceeeEEEEecCC
Q 039044 158 QNPQTE--FKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 158 ~~~~~~--~~~~~~~~~~~v~~i~~~p~~ 184 (194)
+..... ...-..+|...|.|++|..+.
T Consensus 428 nG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 428 NGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred CCCccccCCcccccccceeeeeeeccccC
Confidence 865432 122345688899999997653
No 125
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.8e-22 Score=136.32 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=140.0
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
.+++|+++|..+++|+.||++|+|+.+.... ......|...|.++.|+|||+.|++-+.| ..+||+.+++..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 4789999999999999999999999877642 45556789999999999999999999999 89999999997766
Q ss_pred Eecc--CCCcEEEEEecCCC---C--EEEEeeCCCeEEEEeCCCCCc---e---eE--EecCCeEEEEecCCCEEEEEcC
Q 039044 84 TVAM--HDAPIKEVAWIPEM---N--LLATGSWDKTLKYWDTRQPNP---V---HT--QQLPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 84 ~~~~--~~~~v~~~~~~~~~---~--~l~~~~~d~~v~vwd~~~~~~---~---~~--~~~~~~~~~~~~~~~~l~~~~~ 148 (194)
.... .+.....+.|+.++ . .++.-..-+.|+.||+..... + +. ......+++++++|++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 5542 23446677887766 2 233334455677766543222 1 11 1224578999999999999999
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
||.|-|++..+.+. .+.....|...|+.+.|+||.++++.-
T Consensus 302 dGsVai~~~~~lq~-~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQR-LQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CCcEEEEEeceeee-eEeehhhheeeeeeEEEcCCcCccccc
Confidence 99999999998874 455667799999999999999988763
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.5e-22 Score=131.48 Aligned_cols=155 Identities=21% Similarity=0.340 Sum_probs=127.5
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC---CCeEEEecCCCeEEEEecC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD---GTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~d~~ 77 (194)
+|.++.|-| |..++.+++.|.++++||.++... ......++.|.+-+|+|- ..++++|..+-.|++-|+.
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~------a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE------AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeeccccee------eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 478899999 677999999999999999988642 333345677888888883 4578899999999999999
Q ss_pred CCCceEEeccCCCcEEEEEecCCCCE-EEEeeCCCeEEEEeCCCC-CceeEE-----------------ecCCeEEEEec
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIPEMNL-LATGSWDKTLKYWDTRQP-NPVHTQ-----------------QLPDRCYALTV 138 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~vwd~~~~-~~~~~~-----------------~~~~~~~~~~~ 138 (194)
+|.....+.+|...|.++.|+|...+ |++++.||.+++||+|.. .+...+ ......+++..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999997665 888999999999999864 222111 11235789999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCe
Q 039044 139 RYPLMVVGTADRNLVVFNLQNPQT 162 (194)
Q Consensus 139 ~~~~l~~~~~dg~v~~~d~~~~~~ 162 (194)
++.++++++.|..+++|+..+++.
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cchhhhhccCccceEEeecccCcc
Confidence 999999999999999999987653
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=135.39 Aligned_cols=185 Identities=17% Similarity=0.248 Sum_probs=145.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCC----cccccccccccCCCCCeeEEEEecC--CCeEEEecCCCeEEEEe
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG----TGVASVPKASISHDHPVLCSTWKDD--GTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d 75 (194)
+|+|+.|+-|+.+|++|++||.|.+|.+..-. .........+..|.-+|+++...+. ..+++|++.|.++++||
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 68999999999999999999999999985421 1122345667789999999998774 46899999999999999
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC----------------ceeEE---ec--CCeEE
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----------------PVHTQ---QL--PDRCY 134 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~----------------~~~~~---~~--~~~~~ 134 (194)
+..+..+.++. .+..+.+++..|-++.+..|+.+|.|.+.++.+.. .+..+ .. +++|+
T Consensus 205 lS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 205 LSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL 283 (476)
T ss_pred eccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE
Confidence 99998887765 57889999999999999999999999998875432 11111 12 45799
Q ss_pred EEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 135 ALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 135 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
+++.||..|++|+.||+|.|||..+.+. .+.. ...+++|+.+.+.|-.+..+.
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~Q~-iRtl-~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSKQC-IRTL-QTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchHHH-HHHH-hhhccccceeEeeccccceec
Confidence 9999999999999999999999987653 2322 225678888888665444433
No 128
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=2.5e-21 Score=127.54 Aligned_cols=192 Identities=17% Similarity=0.315 Sum_probs=143.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccc-cccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASV-PKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~ 77 (194)
+.|.|+.|.|++..+++-. |..|.+|++.......... .....++....++-+|+| +++.+++. .|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEcc
Confidence 3589999999999999877 7889999998775421111 122234667788999999 78888776 58899999999
Q ss_pred CCCceEEe-ccCCCcEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCC-ceeEEecCC---eEEEEec-CCCEEEEEcCCC
Q 039044 78 SGGQPVTV-AMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPN-PVHTQQLPD---RCYALTV-RYPLMVVGTADR 150 (194)
Q Consensus 78 ~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~---~~~~~~~-~~~~l~~~~~dg 150 (194)
+.++...+ .+|...|.++.|+|+.+ +|++|++||.|++||.|+.+ ++++...+. -++.|.| ..+.+++|+.|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 88776655 57888999999999755 68899999999999999755 666666554 3667777 457889999999
Q ss_pred cEEEEECCCCCe-----------------------eeE----EeeCCCcceeeEEEEecCCCeeEEEEeeC
Q 039044 151 NLVVFNLQNPQT-----------------------EFK----RINSPLKYQTRCVAAFPDQQGFLVCIHLF 194 (194)
Q Consensus 151 ~v~~~d~~~~~~-----------------------~~~----~~~~~~~~~v~~i~~~p~~~~l~~~~~~~ 194 (194)
.|.+|...+-.. +.. .....|...|.+++|+.-..++.++..++
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 999997653210 000 01234677899999998888877776553
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.6e-21 Score=141.22 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=143.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
-|.|++...++. +++|+.|.++++|....- .....+|...|.+++.-|++ .++||+.|..|++|.- ++.
T Consensus 103 nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l-------~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~ 171 (745)
T KOG0301|consen 103 NVCSLSIGEDGT-LISGSWDSTAKVWRIGEL-------VYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL 171 (745)
T ss_pred ceeeeecCCcCc-eEecccccceEEecchhh-------hcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch
Confidence 366677666666 999999999999998754 34588999999999999987 8899999999999985 778
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
++++.+|..-|+.+++-+++ .|++++.||.|+.|++ +++.+.++..+. -+++...++..++++++|+++++|+..
T Consensus 172 l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 172 LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 88999999999999999874 5789999999999999 677777766654 355666788899999999999999987
Q ss_pred CCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 159 NPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
. ..+.+.. ....++++.+-++|+.++.|+.|
T Consensus 250 e---~~q~I~l-PttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 250 E---CVQVITL-PTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred c---eEEEEec-CccceEEEEEeeCCCEEEeccCc
Confidence 3 2233322 23468999999999999988875
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=135.35 Aligned_cols=182 Identities=21% Similarity=0.327 Sum_probs=135.9
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+|.+++|+.. .+.||+|+.|.+|++||+.++++ ...+..|.+.|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP-----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCc-----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 4567777774 57899999999999999999864 555667999999999999 5678999999999999999964
Q ss_pred CceEEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCC-CceeEEe---cCCeEEEEecCC-CEEEEEcCCCcEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQP-NPVHTQQ---LPDRCYALTVRY-PLMVVGTADRNLV 153 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~-~~~~~~~---~~~~~~~~~~~~-~~l~~~~~dg~v~ 153 (194)
......-...+.|..++|.|. ...++++..||+|+-+|+|+. +++.+.+ .++..++++..- ..+++++.|+.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 433222224678999999994 556888889999999999986 6665554 455778887754 5788899999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
+|++............-.-+...|.++.|+-..++
T Consensus 400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l 434 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL 434 (463)
T ss_pred EEeecCCCCcccccccccccceeecccCCCcceEE
Confidence 99997644322111111123367777777765443
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=143.64 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=155.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.+++++.++.|++.+.|+..|+|-+|++..+-.. ........|..+|+.++...-++.+++++.+|.++.||..++..
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r--~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR--KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeee--cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 4789999999999999999999999999887320 11122357999999999999999999999999999999988876
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+..++ -...+.++..+.....++.+.+|-.|.++|..+.+.++.+.+ ..+.++|+|+|+++++++.|++|++||+.
T Consensus 528 ~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 528 KKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 66665 456788899998888999999999999999999888877664 45789999999999999999999999999
Q ss_pred CCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 159 NPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++... ..+ ....++.++.|+|+|++|++...
T Consensus 607 t~~lI-D~~--~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 607 TGTLI-DGL--LVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred Cccee-eeE--ecCCcceeeEECCCCCEEEEEEe
Confidence 98743 222 24577899999999999998753
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=6.7e-22 Score=144.25 Aligned_cols=183 Identities=13% Similarity=0.175 Sum_probs=149.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec---CCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD---DGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~ 78 (194)
.+.+++.+|+++.||+|..-|.+++|++...+ .......|+..|.|+.|+. ..++|++++.|..|++||+..
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELE-----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhh-----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 47899999999999999999999999998764 3556678999999999976 357899999999999999753
Q ss_pred C-CceEEeccC-------------------------------------------------CCcEEEEEecCCCCEEEEee
Q 039044 79 G-GQPVTVAMH-------------------------------------------------DAPIKEVAWIPEMNLLATGS 108 (194)
Q Consensus 79 ~-~~~~~~~~~-------------------------------------------------~~~v~~~~~~~~~~~l~~~~ 108 (194)
. ..+.++.+| +..+++|+..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 2 111122222 23466777778778999999
Q ss_pred CCCeEEEEeCCCCCceeEEecCC------eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEec
Q 039044 109 WDKTLKYWDTRQPNPVHTQQLPD------RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 109 ~d~~v~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
.|+.|+|||+.+++..+.++... -.+.+.|.|.|+++.+.|.++.++|.-+++... . ..+|...|+.+.|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA-~-m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA-Q-MTGHSEAVTGVKFLN 693 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh-h-hcCcchheeeeeecc
Confidence 99999999999999998887643 357889999999999999999999999987533 2 346889999999999
Q ss_pred CCCeeEEEE
Q 039044 183 DQQGFLVCI 191 (194)
Q Consensus 183 ~~~~l~~~~ 191 (194)
|-++|++.+
T Consensus 694 DCkHlISvs 702 (1080)
T KOG1408|consen 694 DCKHLISVS 702 (1080)
T ss_pred cchhheeec
Confidence 999998764
No 133
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=2.2e-21 Score=129.66 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=140.9
Q ss_pred eeEEEcCC----CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCC
Q 039044 4 SSLCFSPK----ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 4 ~~~~~~p~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~ 78 (194)
+.++|+-+ ..++|+|+.-|.|++.|+.... ......+|...|+.+.+.|+ .+++++++.|..|++|++++
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 45666543 3588999999999999998874 36777899999999999995 47899999999999999999
Q ss_pred CCceEEe---ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc------------------e-------------
Q 039044 79 GGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP------------------V------------- 124 (194)
Q Consensus 79 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~------------------~------------- 124 (194)
..++..+ .+|...|.++.|+++|.++++++.|.+|++|++..++. .
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9998876 57999999999999999999999999999999873210 0
Q ss_pred --eE-------------------------------------------------EecCC-----eEEEEecCCCEEEEEcC
Q 039044 125 --HT-------------------------------------------------QQLPD-----RCYALTVRYPLMVVGTA 148 (194)
Q Consensus 125 --~~-------------------------------------------------~~~~~-----~~~~~~~~~~~l~~~~~ 148 (194)
+. ++.+. ..+++.|.++.|+.|.+
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 00 00000 02344455567899999
Q ss_pred CCcEEEEECCCCCeee--EEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 149 DRNLVVFNLQNPQTEF--KRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.|.|++||++..+.+. ..........|+..+|+.|+..|+...
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC 372 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence 9999999999766431 112233456799999999999887643
No 134
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.8e-22 Score=132.42 Aligned_cols=184 Identities=17% Similarity=0.286 Sum_probs=153.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec----
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL---- 76 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~---- 76 (194)
+.|..++.......+.+++.|.+.+||.++++.+ .....+|.+.+++++|++.+.++++++.|++-.||..
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-----L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLESGAC-----LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeeccccc-----eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 3566676666677899999999999999999964 7788899999999999999999999999999999962
Q ss_pred --CC------------------------------C----CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 77 --LS------------------------------G----GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 77 --~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
.+ + .++..+.+|...|.+..|...|+.+++++.|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 10 0 13456778999999999999999999999999999999999
Q ss_pred CCceeEEecCC---eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 121 PNPVHTQQLPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 121 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++++.+.++. +.++-+|..+.+++.+.|.+.++||.+..- +......+|...|+++.|..+.+ +++|+
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-~sV~VFQGHtdtVTS~vF~~dd~-vVSgS 375 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-QSVAVFQGHTDTVTSVVFNTDDR-VVSGS 375 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-ceeeeecccccceeEEEEecCCc-eeecC
Confidence 99998887765 456778899999999999999999999544 34455678999999999987654 45554
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=4.7e-22 Score=135.94 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=148.9
Q ss_pred CCeeeEEEcCCCC-EEEEeeCCCeEEEEecccCCcc----cccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 1 DSVSSLCFSPKAN-ILVATSWDNQVRCWEISRGGTG----VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~~-~l~~~~~d~~i~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
.+|.++.|.++.. .+++|+.|..|++|.++..... .......+..|...++++.|+|+|+.|++|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3688999998765 9999999999999998765432 2233455678999999999999999999999999999998
Q ss_pred cC--------C-----C---CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEE
Q 039044 76 LL--------S-----G---GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYAL 136 (194)
Q Consensus 76 ~~--------~-----~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~ 136 (194)
.. + . .....+.+|...|..++|+|++.++++++.|+.+++||++.++.......+ ...++|
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvaw 173 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAW 173 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeec
Confidence 65 2 1 112345789999999999999999999999999999999999987766544 467899
Q ss_pred ecCCCEEEEEcCCCcEEEEECCCCCeeeE----E-----------------eeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 137 TVRYPLMVVGTADRNLVVFNLQNPQTEFK----R-----------------INSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 137 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----~-----------------~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|-.+++++-+.|...+.+.+...+.... . .....+.--+.++|+|+|..+++...
T Consensus 174 Dpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 174 DPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred chhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 99999999999888777776654321100 0 00112233578899999999988654
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=139.27 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=134.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
++|.++.|-|-...|++++.|.++++||+..... .-.....+|...+.+++|.| +...|++|+.||.|.|||++..
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l---~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL---VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeecccee---ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 4688999999778899999999999999998753 11234779999999999999 4567899999999999998643
Q ss_pred C---------------------------ceEEeccCCCcEEE---EEecCCCCEEEEeeC-CCeEEEEeCCCCCceeEE-
Q 039044 80 G---------------------------QPVTVAMHDAPIKE---VAWIPEMNLLATGSW-DKTLKYWDTRQPNPVHTQ- 127 (194)
Q Consensus 80 ~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~- 127 (194)
. .+....++...|.+ +.+..|...|++++. |+.|+|||+|+.......
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e 257 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE 257 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence 2 01112234444444 555568888999887 999999999976433211
Q ss_pred -------------ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCC--cceeeEEEEecCCCeeEEEE
Q 039044 128 -------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPL--KYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 128 -------------~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~l~~~~ 191 (194)
.....++..+..|.++++.+.|+.|++|++++..........++ ...-..-..+|++.++++|+
T Consensus 258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 11234677777889999988899999999997654322221111 11112234589999998875
No 137
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-20 Score=124.18 Aligned_cols=189 Identities=19% Similarity=0.319 Sum_probs=138.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
-|+++.|.+.|+.+|+++.|++++|||.+.. ............|.+.|..+.|.+ -|+.+++++.|+++.||.-...
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~-s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSD-SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCC-CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 4899999999999999999999999997443 223344455667999999999966 5889999999999999986321
Q ss_pred C---------ceEEeccCCCcEEEEEecC--CCCEEEEeeCCCeEEEEeCCCC------CceeEEe----------cCCe
Q 039044 80 G---------QPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQP------NPVHTQQ----------LPDR 132 (194)
Q Consensus 80 ~---------~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~------~~~~~~~----------~~~~ 132 (194)
+ ...++......|+++.|.| -|-.|++++.||.++||+.-.. ...++++ .+..
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 1 1234556678999999999 4778999999999999976443 3333333 2234
Q ss_pred EEEEecC---CCEEEEEcCC-----CcEEEEECCCCCeeeEEe--eCCCcceeeEEEEecCC----CeeEEEE
Q 039044 133 CYALTVR---YPLMVVGTAD-----RNLVVFNLQNPQTEFKRI--NSPLKYQTRCVAAFPDQ----QGFLVCI 191 (194)
Q Consensus 133 ~~~~~~~---~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~--~~~~~~~v~~i~~~p~~----~~l~~~~ 191 (194)
|+.|+|. .++|+.|+.+ +.++||............ ...+..+|+.++|.|+- ..|+++.
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 5666653 3678888876 478999877655333332 23688999999999962 3455554
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.1e-22 Score=152.50 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=144.8
Q ss_pred eeEEEcCCCCE----EEEeeCCCeEEEEecccC-CcccccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEecC
Q 039044 4 SSLCFSPKANI----LVATSWDNQVRCWEISRG-GTGVASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 4 ~~~~~~p~~~~----l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~ 77 (194)
+.++|.+.+.. |+.|..||.|.+||.... .............|.+.|..+.|++.. +.|++|+.||.|.|||+.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 57899887654 899999999999998763 122223455667899999999999955 599999999999999998
Q ss_pred CCCceEEe--ccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCceeEEecC-----CeEEEEecCC-CEEEEEcC
Q 039044 78 SGGQPVTV--AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVHTQQLP-----DRCYALTVRY-PLMVVGTA 148 (194)
Q Consensus 78 ~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-----~~~~~~~~~~-~~l~~~~~ 148 (194)
+.+..... ......|.+++|+.. ...|++++.+|.+.|||+|..+++..+... ...+.|+|+. ..++++++
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence 87665554 224678999999984 567889999999999999998887666543 3478999976 45666666
Q ss_pred CC---cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC-CeeEEE
Q 039044 149 DR---NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ-QGFLVC 190 (194)
Q Consensus 149 dg---~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~ 190 (194)
|. .|.+||+|....+.+.. ..|...|.++.|++.+ +++++|
T Consensus 228 dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcc
Confidence 44 49999999877666555 5688899999999987 444444
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-20 Score=132.49 Aligned_cols=178 Identities=13% Similarity=0.201 Sum_probs=146.4
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccccccccccc-CCCCCeeEEEEecCCC-eEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGT-TVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~ 78 (194)
+.|+++.++-...+||+++..|.|.|..+.++.. ...+. +....+.-+.|+|..+ +|.+++.+|.|.+||+..
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCcc-----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 3589999999999999999999999999887742 22222 2344566899999665 566889999999999988
Q ss_pred CCceEEe-ccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEE--ecCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 79 GGQPVTV-AMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 79 ~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
..++..+ ..|..+...++|+| +..+|++.+.|..|.+||.+..+....+ ..+-..++|.++|.+|++|+..|.|..
T Consensus 197 ~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 197 MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEE
Confidence 7776654 67999999999999 4567889999999999999977765544 456689999999999999999999999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
||+|..+.+.... ..|+..|++++|-|.-
T Consensus 277 YD~R~~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 277 YDMRSTKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred EecccCCCCceEe-eecccceeEEEeeecc
Confidence 9999988776655 4588889999998764
No 140
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=132.93 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=126.4
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc---eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEE
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW 116 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vw 116 (194)
...+..|.+.|.-+.|+++|++||+++.|.+.-+|++..... ..++.+|..+|.-+.|+||.++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456678999999999999999999999999999999765544 55778999999999999999999999999999999
Q ss_pred eCCCCCceeEEec----CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 117 DTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 117 d~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
|..++...+.+.. ...+.+|.|||..+++|+.|+.+..||+..... ..........|.+++..+||+++++.
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~--~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL--GNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh--hcccccccceeEEEEEcCCCcEEEEE
Confidence 9999998766544 457899999999999999999999999986542 22222233568999999999998764
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=3.2e-21 Score=131.92 Aligned_cols=118 Identities=22% Similarity=0.373 Sum_probs=99.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccC------C-----cccccccccccCCCCCeeEEEEecCCCeEEEecCCCe
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRG------G-----TGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ 70 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~------~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 70 (194)
+|+++.|+|+|++||+|+.+|.|.+|..... . ...........+|...+..++|+|+++++++++.|+.
T Consensus 67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS 146 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence 6899999999999999999999999987621 1 0112223445679999999999999999999999999
Q ss_pred EEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 71 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 71 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
+++||+..|+....+..|...+..++|.|.++++++-+.|...+.+.+.
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999999999999988888765555443
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=3.4e-20 Score=130.36 Aligned_cols=181 Identities=21% Similarity=0.271 Sum_probs=143.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC-
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG- 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~- 80 (194)
-|.|++|.++++ +++|..+|.|.||+..... .......|.+.|.+++.-.+|.+|- |+.|..|..||-.-.+
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~-----~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~ 320 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNR-----ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKL 320 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCce-----EEeEeeecCCceEEEEEecCccEee-cCccceEEecccccccc
Confidence 378999999886 7899999999999986553 2333448999999999999987655 9999999999832100
Q ss_pred ----------c-----------------------------eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q 039044 81 ----------Q-----------------------------PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121 (194)
Q Consensus 81 ----------~-----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 121 (194)
. .....+|..+...++.+|+.+.+++++.|+.+++|+-...
T Consensus 321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~ 400 (626)
T KOG2106|consen 321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKL 400 (626)
T ss_pred ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCce
Confidence 0 0112347778889999999999999999999999993333
Q ss_pred CceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 122 NPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
+..+.+..+..+..|+|.| .++.|+..|...+.|.++... .... .. ..++++++|+|+|.+|++|+|.
T Consensus 401 ~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~-~d-~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 401 EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIH-TD-NEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred eEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEE-ec-CCceEEEEEcCCCCEEEEecCC
Confidence 3445566788899999999 999999999999999998442 2222 22 7889999999999999999874
No 143
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.3e-21 Score=135.60 Aligned_cols=189 Identities=19% Similarity=0.296 Sum_probs=147.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEeccc---CCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISR---GGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
.|+.++|+|....|++++.||++++|++.. ...........+.+|.++|.|+++.++++.+++|+.||.|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 467889999999999999999999999933 22222234566778999999999999999999999999999996642
Q ss_pred C----------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce------------------------
Q 039044 79 G----------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV------------------------ 124 (194)
Q Consensus 79 ~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~------------------------ 124 (194)
. .....+.+|...|+.+++++....|++++.||+++.|+.....+.
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 1 122357899999999999998889999999999999987644320
Q ss_pred --------------------eEEec----------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcce
Q 039044 125 --------------------HTQQL----------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQ 174 (194)
Q Consensus 125 --------------------~~~~~----------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~ 174 (194)
..+.. ....+...|.....+++.+|+.|+++|..++...... ..|...
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~s 533 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDS 533 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe--eeccce
Confidence 00000 0123455667778999999999999999988754332 247788
Q ss_pred eeEEEEecCCCeeEEEEe
Q 039044 175 TRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 175 v~~i~~~p~~~~l~~~~~ 192 (194)
++++++.|+|-+|++++|
T Consensus 534 vtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 534 VTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred ecceeecCCCceEEeecC
Confidence 999999999999999876
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=7.4e-22 Score=133.46 Aligned_cols=155 Identities=15% Similarity=0.299 Sum_probs=126.2
Q ss_pred CCeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
+.|.++.|+|.. ..|++++.|+.|.+||+..... .......-.-+.++|+|++-.|++|++|..++.||++..
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P------l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASP------LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCc------cceeeeeccccceecCccccceeeccccccceehhhhhh
Confidence 468899999965 6778888999999999998753 111223344578999998888999999999999999875
Q ss_pred C-ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---eEE-ecCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 80 G-QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQ-QLPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 80 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
. ++....+|...|.+++|+|.|+-+++||.|.+|+||..+.+..- ++- ..++.++.++-|.+++++|+.|++|++
T Consensus 262 ~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 262 SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 4 45567889999999999999999999999999999998866532 221 234568999999999999999999999
Q ss_pred EECCCCC
Q 039044 155 FNLQNPQ 161 (194)
Q Consensus 155 ~d~~~~~ 161 (194)
|.....+
T Consensus 342 Wka~Ase 348 (433)
T KOG0268|consen 342 WKAKASE 348 (433)
T ss_pred eecchhh
Confidence 9876543
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=5.3e-20 Score=129.42 Aligned_cols=187 Identities=14% Similarity=0.198 Sum_probs=147.3
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccc-----------------------------------cccccC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASV-----------------------------------PKASIS 45 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-----------------------------------~~~~~~ 45 (194)
+.|.+++...+|.+|- |++|+.|..||-+-......+. .....+
T Consensus 288 ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g 366 (626)
T KOG2106|consen 288 GGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG 366 (626)
T ss_pred CceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence 4678888888886555 9999999999943221100000 112245
Q ss_pred CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q 039044 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 125 (194)
Q Consensus 46 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~ 125 (194)
|......++.+|+.++++|++.|+.+++|+ ..+.+... .-..++.++.|+|.| .++.|...|...+.|.++...+.
T Consensus 367 h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence 777888999999999999999999999999 33444433 246788999999999 99999999999999999866554
Q ss_pred EE--ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 126 TQ--QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.. ..+.+++.++|+|.+++.|+.|+.|++|-+......+.+...-+..+++.+.|++|++++.+-+-
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 43 44568999999999999999999999999987776777766666689999999999999987553
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=123.93 Aligned_cols=187 Identities=19% Similarity=0.286 Sum_probs=139.0
Q ss_pred CCeeeEEEcC-CCCEEEEeeCC-------CeEEEEecccCCccc----cccccccc-CCCCCeeEEEEecCCCeEEEecC
Q 039044 1 DSVSSLCFSP-KANILVATSWD-------NQVRCWEISRGGTGV----ASVPKASI-SHDHPVLCSTWKDDGTTVFSGGC 67 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d-------~~i~i~~~~~~~~~~----~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 67 (194)
+.|..++-+| +.+.|+++..+ ..+.||.+....... ......+. .+-+.+.|+.|.|++..+++-.
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~- 142 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD- 142 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence 4688888899 56777777653 247799987653211 11111222 3456899999999999888875
Q ss_pred CCeEEEEecCCCCc-eEEe-----ccCCCcEEEEEecC--CCCEEEEeeCCCeEEEEeCCCCCceeEEecC----CeEEE
Q 039044 68 DKQVKMWPLLSGGQ-PVTV-----AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYA 135 (194)
Q Consensus 68 d~~i~~~d~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~ 135 (194)
|..|.+|++..+.. ...+ ..+....++-+|+| +++.+++.+ |+++..||+|+.+....++.. .+.+.
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLD 221 (370)
T ss_pred cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeecc
Confidence 88899999988766 2222 23566788889999 788888776 899999999988776655432 46778
Q ss_pred EecCCC-EEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 136 LTVRYP-LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 136 ~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
|.|+-+ +|++|+.||.|++||.|..+.+...+ .+|...|.++.|+|....|+..
T Consensus 222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-PGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred CCCCceEEEEEcCCCccEEEEeccCCCcccccc-CCCceEEEEEEecCccceEEEe
Confidence 888765 57889999999999999988766555 5689999999999987766654
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.5e-21 Score=133.88 Aligned_cols=179 Identities=12% Similarity=0.201 Sum_probs=145.4
Q ss_pred eEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEE
Q 039044 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT 84 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 84 (194)
|++......++++|+..+.|+|||+... .....+..|...|+++.++....+|++++..|.|.|..+.++....+
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 4455555689999999999999999865 34667788999999999999999999999999999999999888777
Q ss_pred eccC-CCcEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCceeE----EecCCeEEEEecCC-CEEEEEcCCCcEEEEEC
Q 039044 85 VAMH-DAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHT----QQLPDRCYALTVRY-PLMVVGTADRNLVVFNL 157 (194)
Q Consensus 85 ~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~~~~~~~~~-~~l~~~~~dg~v~~~d~ 157 (194)
|... ...|+-+.|+|..+ +|.+++++|.|.+||+....+++. +..+...++|+|.. ..+++.+.|..|.+||.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence 7644 34567899999765 466789999999999998777654 44566789999965 56788999999999999
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.... ...+. ...+...++|.|+|.+|++|.
T Consensus 239 ~s~~s-~~~l~--y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQAS-TDRLT--YSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ccccc-cceee--ecCCcceeeecCCceEEEeec
Confidence 86442 23332 456789999999999999884
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=5.7e-19 Score=123.34 Aligned_cols=179 Identities=13% Similarity=0.036 Sum_probs=129.0
Q ss_pred eeeEEEcCCCCEEEEe-eCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCC-eEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVAT-SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK-QVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~ 80 (194)
+..++|+|+++.++++ ..++.+++||+.+... .... .....+.+++|+|++++++++..++ .+..||.++++
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-----~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKV-----LAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-----EeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 4578899999877654 5689999999987532 1111 2233467899999999999888765 56778988776
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEe-eCCCeEEEEeCCCCCceeEEecC----------CeEEEEecCCCEEEEE-cC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPVHTQQLP----------DRCYALTVRYPLMVVG-TA 148 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~-~~ 148 (194)
...... ....+..++|+|++++++.+ ..++.|++||+++++.+..+... ...++++|++++++++ ..
T Consensus 149 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 149 IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 655443 23456789999999988654 46899999999988776554321 1357789999986554 45
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++.+.+||+++.+.. .... +...+.+++|+|+|++|+++.
T Consensus 228 ~~~i~v~d~~~~~~~-~~~~--~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 228 ANRVAVVDAKTYEVL-DYLL--VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred CCeEEEEECCCCcEE-EEEE--eCCCcceEEECCCCCEEEEEc
Confidence 667999999876532 2222 334688999999999998764
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.9e-19 Score=129.32 Aligned_cols=183 Identities=19% Similarity=0.228 Sum_probs=144.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.+|.++|++.+.+.||.+-.||.|.+|++...-. .......+....|.+++|. ++.+|++.+.+|.|.-||+.+++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~---~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF---LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce---eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 3689999999999999999999999999987532 2223333556789999999 55678888899999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe-----cCCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ-----LPDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
+...+....+.|.+++.+|.+..++.+++||.+..++...++...... ...-+++|.+++..++.|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999999889999999999999999999999988888887776554432 233477888899999999999999999
Q ss_pred ECCCCCeeeEE------eeCCCcceeeEEEEecCCCee
Q 039044 156 NLQNPQTEFKR------INSPLKYQTRCVAAFPDQQGF 187 (194)
Q Consensus 156 d~~~~~~~~~~------~~~~~~~~v~~i~~~p~~~~l 187 (194)
|..++...... .......-|+++.|-.++..+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~ 219 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIA 219 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEE
Confidence 99988754411 111233457788877666544
No 150
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.2e-19 Score=118.03 Aligned_cols=142 Identities=16% Similarity=0.229 Sum_probs=126.9
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
++-++|+-++++++.....|+|.|.....-+ ....+..|.....|+.|+|+|++|++|+.|..+.+||++..-++
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-----pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLK-----PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE 224 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccc-----cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh
Confidence 5678888778888777778999999988653 36778889999999999999999999999999999999998899
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCC
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTAD 149 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d 149 (194)
+.+..+.-+|+.+.|+.+|++|++++.|..|-|=+++++..+.+++. +...++|+|....|+-++.|
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999999999999999999999999999988765 45689999999998887765
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=123.24 Aligned_cols=141 Identities=15% Similarity=0.246 Sum_probs=115.9
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec
Q 039044 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 129 (194)
Q Consensus 50 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~ 129 (194)
..|+.|++-|.+|+.|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..+.+||+..+.+++.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 78999999999999999999999999999888888999999999999999999999999999999999998876544321
Q ss_pred CC-------------------------------------------------eEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 130 PD-------------------------------------------------RCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 130 ~~-------------------------------------------------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
+. .+..+.+.|+++++|...|.+.++|..+.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 10 12235566789999999999999999987
Q ss_pred CeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 161 QTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 161 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.. ..........|..+.++..|+.|+.-.
T Consensus 186 e~v-as~rits~~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 186 ECV-ASFRITSVQAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred eee-eeeeechheeeeEEEEeccCcEEEEec
Confidence 642 223222346789999999999888753
No 152
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=7.4e-20 Score=122.01 Aligned_cols=190 Identities=15% Similarity=0.191 Sum_probs=150.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC-
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG- 79 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~- 79 (194)
++|+|.+|++|+..+|.+.....|.||....... ......+..|...+++++|+|..+.|++++.|..-++|....+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCC--ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4799999999999999999999999999876642 2345677889999999999999999999999999999998443
Q ss_pred --CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-------eeEEecCCeEEEEecCCCEEEEEcCCC
Q 039044 80 --GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-------VHTQQLPDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 80 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg 150 (194)
++...+..++..++++.|+|.++.|++++..+.|.||-++..+. .+.+...+.+++|+|++-.+++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 23445667899999999999999999999999999998876442 122344457899999999999999999
Q ss_pred cEEEEECC-----CCC--------eeeEE---eeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 151 NLVVFNLQ-----NPQ--------TEFKR---INSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 151 ~v~~~d~~-----~~~--------~~~~~---~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..++|..- ... .++-. ......+.+..+.|+|+|..|+--.|
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 99998542 110 11111 11134578999999999999886554
No 153
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1.6e-18 Score=121.14 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=126.6
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeE-EEecCCCeEEEEecCCCCceEEeccCCC
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTV-FSGGCDKQVKMWPLLSGGQPVTVAMHDA 90 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 90 (194)
+..+++++.|+.+++||+.++.. ......+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-
Confidence 35788999999999999977642 2233333 336789999999876 567788999999999888776665443
Q ss_pred cEEEEEecCCCCEEEEe-eCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCC-cEEEEECCCCCeeeEE
Q 039044 91 PIKEVAWIPEMNLLATG-SWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADR-NLVVFNLQNPQTEFKR 166 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~-~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~ 166 (194)
.+..++|+|+++.++++ +.++.+++||+++.+.+..+.. ....++++|++++++++..++ .+.+||.++.+.. ..
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~-~~ 152 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV-DN 152 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-EE
Confidence 35678999999877554 5689999999998877766653 346789999999999988775 4677898876532 22
Q ss_pred eeCCCcceeeEEEEecCCCeeEEEE
Q 039044 167 INSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 167 ~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.. ......+++|+|+++.++++.
T Consensus 153 ~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 153 VL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EE--cCCCccEEEECCCCCEEEEEc
Confidence 22 223457899999999886653
No 154
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=3.6e-20 Score=136.77 Aligned_cols=153 Identities=13% Similarity=0.224 Sum_probs=133.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+.++...-++.+++++.+|.++.||..... ......-...+.++..+.....++.+..|-.|+++|..+.+
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcc------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 478999998888999999999999999998764 22233445678888888888899999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCC-cEEEEEC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADR-NLVVFNL 157 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg-~v~~~d~ 157 (194)
.++.+.+|.+.|++++|+|+|++|++++.|++|++||+-++.++-.+.. +...+.++|+|.+|++...|+ -|++|--
T Consensus 568 vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 568 VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999999999999999999999999999999999877655 456789999999999999984 4999965
Q ss_pred CC
Q 039044 158 QN 159 (194)
Q Consensus 158 ~~ 159 (194)
.+
T Consensus 648 ks 649 (910)
T KOG1539|consen 648 KS 649 (910)
T ss_pred hh
Confidence 44
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=3.8e-20 Score=128.48 Aligned_cols=188 Identities=20% Similarity=0.193 Sum_probs=139.1
Q ss_pred CCeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 1 DSVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 1 ~~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.+|.++.|+|. ..++++.+.||+|++-|++.... ............+..+.|+.+...++.+..=|...+||++++
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~---e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS---EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD 311 (498)
T ss_pred ccccceEecCCChhheeeeccCceeeeeeecchhh---HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence 36899999995 57899999999999999987642 222223334556788899888888888888889999999987
Q ss_pred Cc-eEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCc-----eeEE--ecCCeEEEEecCCCEEEEEcCCC
Q 039044 80 GQ-PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP-----VHTQ--QLPDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 80 ~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~dg 150 (194)
+. ...+.-|+..|+.++++| ...+|++++.|++++|||+|+-.. +... ...+.+..|+|.+-.|++.+.|.
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence 76 556777889999999999 456799999999999999986432 2222 23456889999888899999999
Q ss_pred cEEEEECC---CCCeeeEEeeCC--Ccc--eeeEEEEecCCCeeEEEE
Q 039044 151 NLVVFNLQ---NPQTEFKRINSP--LKY--QTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 151 ~v~~~d~~---~~~~~~~~~~~~--~~~--~v~~i~~~p~~~~l~~~~ 191 (194)
.|+|||.. ....+...+... +.. ..-...|.|+..++++|-
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec
Confidence 99999984 222222222111 111 123457889888887763
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-20 Score=142.09 Aligned_cols=186 Identities=17% Similarity=0.291 Sum_probs=140.4
Q ss_pred CCeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~ 78 (194)
++|..+.|++.+ +.||+|+.||.|.|||+...+... ..........|.+++|+.. .+.|++++.+|.+.|||++.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~ 193 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK 193 (1049)
T ss_pred CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence 579999999965 599999999999999998864311 1113335678999999884 45788899999999999999
Q ss_pred CCceEEeccCCC--cEEEEEecCCC-CEEEEeeCCC---eEEEEeCCCCC-ceeEEec---CCeEEEEecCC-CEEEEEc
Q 039044 79 GGQPVTVAMHDA--PIKEVAWIPEM-NLLATGSWDK---TLKYWDTRQPN-PVHTQQL---PDRCYALTVRY-PLMVVGT 147 (194)
Q Consensus 79 ~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~v~vwd~~~~~-~~~~~~~---~~~~~~~~~~~-~~l~~~~ 147 (194)
.+.+..+..+.. .+..++|+|+. ..+++++.|. .|.+||+|... +++.++. ...++.|++.+ .++++++
T Consensus 194 ~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 194 KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence 988887766544 57899999964 4566666553 69999999643 4444444 44567777755 7899999
Q ss_pred CCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 148 ADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 148 ~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.|+.|.+|+.++++.. ..+ ......+..+.|+|....++++.
T Consensus 274 kD~~ii~wN~~tgEvl-~~~-p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGEVL-GEL-PAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred CCCCeeEecCCCceEe-eec-CCCCcceeeeeecCCCcchhhhh
Confidence 9999999999997743 223 23567889999999877555543
No 157
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=6.7e-20 Score=130.34 Aligned_cols=189 Identities=19% Similarity=0.258 Sum_probs=142.6
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~ 78 (194)
|-|+|++|+.+|.+|++|+.|-.+.|||.-..+ .......+|...|.+++|-| +.+.+++|..|..|+++|+..
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 458999999999999999999999999987553 33456678999999999999 556889999999999999974
Q ss_pred C----------CceEEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeE-------------EecCCeEE
Q 039044 79 G----------GQPVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHT-------------QQLPDRCY 134 (194)
Q Consensus 79 ~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~-------------~~~~~~~~ 134 (194)
. .....+..|...|..++-.|++ +.+.+++.||+++-+|+|....... ......++
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 2 2334467789999999999987 7899999999999999997432111 11234688
Q ss_pred EEecCC-CEEEEEcCCCcEEEEECCCCCee-----------------eEEeeCCCc-----------ceeeEEEEecCCC
Q 039044 135 ALTVRY-PLMVVGTADRNLVVFNLQNPQTE-----------------FKRINSPLK-----------YQTRCVAAFPDQQ 185 (194)
Q Consensus 135 ~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~-----------------~~~~~~~~~-----------~~v~~i~~~p~~~ 185 (194)
.++|.. .+|++|+.|-..++||.|...++ .......|- ..++-+.|+|+|.
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGt 286 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGT 286 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCc
Confidence 999965 57889999999999995421110 111111111 1256678999999
Q ss_pred eeEEEEee
Q 039044 186 GFLVCIHL 193 (194)
Q Consensus 186 ~l~~~~~~ 193 (194)
.|++...+
T Consensus 287 ElLvs~~g 294 (758)
T KOG1310|consen 287 ELLVSWGG 294 (758)
T ss_pred EEEEeeCC
Confidence 98887543
No 158
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.84 E-value=1.6e-18 Score=113.17 Aligned_cols=149 Identities=15% Similarity=0.375 Sum_probs=111.1
Q ss_pred eEEEcCCCCEEEEeeC----------CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE--ecCCCeEE
Q 039044 5 SLCFSPKANILVATSW----------DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS--GGCDKQVK 72 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~ 72 (194)
.+.|+|+|+.|+.-.. -+...+|.++.... ..........++|.+++|+|+++.|+. |..+..|.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 5789999987765433 23466777755432 112222234567999999999998754 44677999
Q ss_pred EEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC---CCeEEEEeCCCCCceeEEecC-CeEEEEecCCCEEEEEcC
Q 039044 73 MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 148 (194)
+||++ ++.+..+. ...++.+.|+|+|+++++++. .|.|.+||.++.+.+.+.+.. ...++|+|+|+++++++.
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 99996 55655554 567889999999999999875 367999999988888776654 467899999999999874
Q ss_pred ------CCcEEEEECCC
Q 039044 149 ------DRNLVVFNLQN 159 (194)
Q Consensus 149 ------dg~v~~~d~~~ 159 (194)
|..++||+...
T Consensus 164 ~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ccceeccccEEEEEecC
Confidence 67789999864
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-18 Score=125.92 Aligned_cols=181 Identities=13% Similarity=0.206 Sum_probs=142.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|.+++|++ +..|++.+.+|.|.-||+.+.+. ........+.|.+++.+|.+..++.|++||.+..++...++.
T Consensus 71 sIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~-----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 71 SIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ-----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred ceeeEEEcc-CCeEEeecCCceEEEEecccCce-----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 578999995 45677777899999999998853 556667789999999999999999999999777777765554
Q ss_pred eE--EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-----C--CeEEEEec---CCCEEEEEcCC
Q 039044 82 PV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-----P--DRCYALTV---RYPLMVVGTAD 149 (194)
Q Consensus 82 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-----~--~~~~~~~~---~~~~l~~~~~d 149 (194)
.. .+...++.|.+++|+|++..+++|+.||.|++||..++..++.... . ..++.|+- ....+++|.+-
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence 33 3444568999999999999999999999999999999887763221 1 23344332 45679999999
Q ss_pred CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 150 RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
|+|.+||...+... +.. ..|...|.+++..+++.+++++
T Consensus 225 G~V~FWd~~~gTLi-qS~-~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLI-QSH-SCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ceEEEEcccCcchh-hhh-hhhhcceeEEEEcCCCCeEEEc
Confidence 99999999887642 222 3477889999999998777765
No 160
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.84 E-value=4.1e-19 Score=128.93 Aligned_cols=144 Identities=22% Similarity=0.323 Sum_probs=122.4
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+|.+++.-|++ .++||+.|.+|++|.-.+ ....+.+|.+.|..+++-+++ .|++++.||.|+.|++ +++.
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence 57888888877 899999999999998643 367788999999999999765 5789999999999998 7889
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe-E--EEEecCCCEEEEEcCCCcEEEEECC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-C--YALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
+.++.+|..-|+++...+++..+++++.|+++++|+.. ++.+.+..|.. + ..+-++| -+++|++||.||||..+
T Consensus 212 l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEEEEec
Confidence 99999999999999988888899999999999999977 77777777763 2 3333444 57888999999999876
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=118.09 Aligned_cols=186 Identities=17% Similarity=0.307 Sum_probs=135.4
Q ss_pred CeeeEEEcCCC-----CEEEEeeCCCeEEEEecccCCccccc----ccccccCCCCCeeEEEEec-CCCeEEEecCCCeE
Q 039044 2 SVSSLCFSPKA-----NILVATSWDNQVRCWEISRGGTGVAS----VPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQV 71 (194)
Q Consensus 2 ~v~~~~~~p~~-----~~l~~~~~d~~i~i~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i 71 (194)
+++.+.|.|+. ++||+.+ | .+|+|.+...+..... .......+..++++..|+. +.++|.+.+-|.+.
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred CccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 56788999975 3566654 3 6999999854321111 1122334678999999988 77899999999999
Q ss_pred EEEecCCCCc---eEEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEEe-cC---C--eEEEEec-CC
Q 039044 72 KMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQ-LP---D--RCYALTV-RY 140 (194)
Q Consensus 72 ~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~---~--~~~~~~~-~~ 140 (194)
.|||++++.. ...+-+|..+|.+++|...+ +.|+++|.||.+++||+|..+--..+. .+ . ..+++++ +.
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp 255 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP 255 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence 9999998743 34567899999999999854 579999999999999999866433222 11 1 2445554 34
Q ss_pred CEEEEEcCC-CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCC-eeEEE
Q 039044 141 PLMVVGTAD-RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ-GFLVC 190 (194)
Q Consensus 141 ~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~ 190 (194)
+++++-..| ..|.+.|+|.+..++..+ ..|.+.|+.++|.|... ++++|
T Consensus 256 nymATf~~dS~~V~iLDiR~P~tpva~L-~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 256 NYMATFAMDSNKVVILDIRVPCTPVARL-RNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred hHHhhhhcCCceEEEEEecCCCcceehh-hcCcccccceEecCCCCceeeec
Confidence 677776555 459999999998777666 45899999999999764 44443
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=6.2e-19 Score=120.70 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=122.0
Q ss_pred ccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC-------CceEEeccCCCcEEEEEecCC-CCEEEEeeCCC
Q 039044 41 KASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDK 111 (194)
Q Consensus 41 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~ 111 (194)
...-+|.+++..++|+| +.+.|++|++|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 44568999999999999 6678999999999999998654 346678899999999999995 56899999999
Q ss_pred eEEEEeCCCCCceeEEecCCe--EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 112 TLKYWDTRQPNPVHTQQLPDR--CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 112 ~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
+|.+||+.+++.+.++.++.. +++|+.+|..+++.+.|..|+|||.++++..... ..........+.|-.+|..+.+
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeee
Confidence 999999999998888776654 6677889999999999999999999998754433 2222234466778888886655
Q ss_pred EE
Q 039044 190 CI 191 (194)
Q Consensus 190 ~~ 191 (194)
|.
T Consensus 234 Gf 235 (472)
T KOG0303|consen 234 GF 235 (472)
T ss_pred cc
Confidence 53
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=8.6e-19 Score=127.33 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=135.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCC-----eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec
Q 039044 2 SVSSLCFSPKANILVATSWDN-----QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 76 (194)
.|++++.+|+++++|++++.. .|++|+...-. ....+..|.-.|+.++|+||+++|++.++|.++.+|..
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~-----~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL-----QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh-----hhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 589999999999999998754 48899977653 24567899999999999999999999999999999997
Q ss_pred CCCCce----EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC--CceeE-----EecCCeEEEEec-----CC
Q 039044 77 LSGGQP----VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP--NPVHT-----QQLPDRCYALTV-----RY 140 (194)
Q Consensus 77 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~--~~~~~-----~~~~~~~~~~~~-----~~ 140 (194)
...... ...+.|..-|.++.|+|++.+|+|+|+|++|++|..... +.+.. +....+.+++.| .+
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence 554321 235789999999999999999999999999999988766 33322 233455666665 22
Q ss_pred CEEEEEcCCCcEEEEECCCCCee-------eE---EeeCCCcceeeEEEEecC
Q 039044 141 PLMVVGTADRNLVVFNLQNPQTE-------FK---RINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 141 ~~l~~~~~dg~v~~~d~~~~~~~-------~~---~~~~~~~~~v~~i~~~p~ 183 (194)
..++.|.+.|.|.+|......+. .. ....++...|+.+.|.|.
T Consensus 682 ~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 682 DVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred ceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 36888999999999985511110 00 012345678999999975
No 164
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.5e-19 Score=122.59 Aligned_cols=182 Identities=14% Similarity=0.192 Sum_probs=142.1
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
+.....+|++++|+..+..|.|.+....+++ ........+.+..++|+.+++.|++.+.+|.|.+||+++..++
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~e------li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKE------LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL 379 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhh------hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence 4566789999999999999999999887764 2333346788999999999999999999999999999999888
Q ss_pred EEeccCCCcE--EEEEecCCCCEEEEeeCCCeEEEEeCCC------CCceeEE---ecCCeEEEEecCCCEEEEEcC--C
Q 039044 83 VTVAMHDAPI--KEVAWIPEMNLLATGSWDKTLKYWDTRQ------PNPVHTQ---QLPDRCYALTVRYPLMVVGTA--D 149 (194)
Q Consensus 83 ~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~---~~~~~~~~~~~~~~~l~~~~~--d 149 (194)
..+.. .+.| ++++.++++.+||+|+..|.|.|||..+ ++++..+ ...+..+.|+++.+.|+.++. .
T Consensus 380 ~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k 458 (514)
T KOG2055|consen 380 HRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK 458 (514)
T ss_pred EEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc
Confidence 88763 2333 5677778999999999999999999653 3454443 345678999999999998886 5
Q ss_pred CcEEEEECCCCCeeeEEeeC--CCcceeeEEEEecCCCeeEEEEe
Q 039044 150 RNLVVFNLQNPQTEFKRINS--PLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..+++..+.+.. .+...+. ..-+.|+|++|+|.+.+|++|-.
T Consensus 459 nalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 459 NALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred cceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 568888877643 2222221 12356899999999999999853
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3e-19 Score=122.61 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=141.3
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccc--cCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKAS--ISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
+-|+++.|+.++++|++|+.|..+++|+++..-......+..+ ..|...|.|++|+....++++|..+++|.+.|+++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 4588999999999999999999999999875322111122222 34668899999999999999999999999999999
Q ss_pred CCceEEecc--CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEE---ecC--CeEEEEecCC-CEEEEEcCC
Q 039044 79 GGQPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQ---QLP--DRCYALTVRY-PLMVVGTAD 149 (194)
Q Consensus 79 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~---~~~--~~~~~~~~~~-~~l~~~~~d 149 (194)
.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... ++..+ ..+ -..+.|+|.. ..|++.++.
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~ 216 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSET 216 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecccc
Confidence 888776542 23589999999998999999999999999998755 22222 111 2466788855 567788888
Q ss_pred CcEEEEECCCCCeeeEEee--CCCc---ceeeEEEEecCCCeeEE
Q 039044 150 RNLVVFNLQNPQTEFKRIN--SPLK---YQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~--~~~~---~~v~~i~~~p~~~~l~~ 189 (194)
+-+.+||.+..+.+..... .... ..-.++.|+|+|..+++
T Consensus 217 ~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 217 GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 8899999998765433221 1111 22367889999987654
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=2.1e-19 Score=130.73 Aligned_cols=173 Identities=17% Similarity=0.303 Sum_probs=134.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+.++|.|||..|+.+. +..+.+||.+++. ....+.+|++.|.|++|+.||+++++|+.|..|.+|.-+- +-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EG 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-----cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cc
Confidence 478999999998888776 4479999999985 3788899999999999999999999999999999998543 23
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC--CeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP--DRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+..+ .|...|.||.|+|-...|++++. ...-+|...... +.+.+.. ..+.+|..||++++.|..+|+|.+-+...
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eeee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 3334 48999999999999899999885 345678765433 3333333 34667778999999999999999986544
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCC
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
.+........+...+|.+++|+|..
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCC
Confidence 3322222334567889999999964
No 167
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.3e-19 Score=126.04 Aligned_cols=190 Identities=19% Similarity=0.242 Sum_probs=147.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccc-------------------------------------------
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVA------------------------------------------- 37 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~------------------------------------------- 37 (194)
+.|.+|...|.|..|++|+.||+|+||.+.++.+...
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG 480 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence 4689999999999999999999999999976542000
Q ss_pred ------------cc-------------------cccccCCCCCeeEEEEecCCCeEEEecCC---CeEEEEecCCCCceE
Q 039044 38 ------------SV-------------------PKASISHDHPVLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPV 83 (194)
Q Consensus 38 ------------~~-------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~ 83 (194)
.. ......|...|..+.|+..|.+|++..-+ ..|.|+++.......
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~ 560 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS 560 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC
Confidence 00 00112345667778888888888876543 457788877666655
Q ss_pred EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
.|+...+.|.++.|+|...+|++++ ...|++||+...+.++++... ...++++|.|..|+.|+.|+.+..||+.-.
T Consensus 561 PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 561 PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC
Confidence 6666678899999999988888887 689999999987776655443 457899999999999999999999999988
Q ss_pred CeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 161 QTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 161 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..+++.+. .|...+++++|++.-..+++|+.
T Consensus 640 skPyk~lr-~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 640 SKPYKTLR-LHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred cchhHHhh-hhhhhhhhhhhccccceeeeecC
Confidence 77776664 47888999999999888888865
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-17 Score=107.42 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=127.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccc-------cccccc-cCCCCCeeEEEEecCCCeEEEecCCCeEE
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVA-------SVPKAS-ISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~-------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 72 (194)
++|+.++|+ .++|++|+ ||.|+-|..++...... ..+... ...-..|++|-..|..+-++.++.|+.++
T Consensus 63 gpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 63 GPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred CCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEE
Confidence 478889997 45677776 69999998765432100 001111 11234689999999888888888999999
Q ss_pred EEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC-----------eEEEEecCCC
Q 039044 73 MWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-----------RCYALTVRYP 141 (194)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~ 141 (194)
-||+++|+..+++++|.+.|.++.--.....+++|+.||++++||.++++.+..+.... -..++.-+..
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed 219 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED 219 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc
Confidence 99999999999999999999999985555678899999999999999999877664321 1356667778
Q ss_pred EEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEec
Q 039044 142 LMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 142 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
++++|+ ...+.+|.+++.+. ...+ +...++..+.|..
T Consensus 220 WlvCGg-Gp~lslwhLrsse~-t~vf--pipa~v~~v~F~~ 256 (325)
T KOG0649|consen 220 WLVCGG-GPKLSLWHLRSSES-TCVF--PIPARVHLVDFVD 256 (325)
T ss_pred eEEecC-CCceeEEeccCCCc-eEEE--ecccceeEeeeec
Confidence 888776 45699999998764 2222 2345566666653
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1e-18 Score=126.51 Aligned_cols=193 Identities=18% Similarity=0.293 Sum_probs=143.8
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccC-CCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
+-|+++.|+| +..+||+++.|..|+||.+..+.......+....+ ....+.++.|+|...-|+..+..|.+++||+.+
T Consensus 80 d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~st 159 (1012)
T KOG1445|consen 80 DQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDIST 159 (1012)
T ss_pred ceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEccc
Confidence 3588999999 56789999999999999998543322222333333 455788999999766666666789999999999
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeEEecCC----eEEEEecCCCEEEEEcC----C
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PNPVHTQQLPD----RCYALTVRYPLMVVGTA----D 149 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~----~~~~~~~~~~~l~~~~~----d 149 (194)
++.+.++.+|...|.++.|+.||..++++..|+.|+|||.|. +++++..+.+. ..+.|.-+...|++.+- -
T Consensus 160 qk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~ 239 (1012)
T KOG1445|consen 160 QKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRI 239 (1012)
T ss_pred CceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhh
Confidence 999999999999999999999999999999999999999986 45565554432 24444444445555443 3
Q ss_pred CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 150 RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
..|++||.+....+...+.......|.--.|.||.+.++.+..|
T Consensus 240 reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG 283 (1012)
T KOG1445|consen 240 REVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKG 283 (1012)
T ss_pred eeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCC
Confidence 56999999987766665554444445555688888887776543
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=124.18 Aligned_cols=185 Identities=15% Similarity=0.194 Sum_probs=134.3
Q ss_pred EEEcC---CCCEEEEeeCCCeEEEEecccCCcc-cccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 6 LCFSP---KANILVATSWDNQVRCWEISRGGTG-VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 6 ~~~~p---~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
..|++ ...+|+.+.+||.|.++|.....-. ..........|...|..+.|-|....|++++.|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45554 2468999999999999998765322 1122345567999999999999777899999999999999999887
Q ss_pred eEE--eccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCc--------------------eeE-------EecC-
Q 039044 82 PVT--VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP--------------------VHT-------QQLP- 130 (194)
Q Consensus 82 ~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~--------------------~~~-------~~~~- 130 (194)
... +.+|...|.+++|.| +...|++|+.||.+.|||+|-... ... -..+
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 665 789999999999999 456799999999999999874320 000 0000
Q ss_pred --Ce---EEEEecCCCEEEEEcC-CCcEEEEECCCCCeeeEEeeC---------CCcceeeEEEEecCCCeeEEE
Q 039044 131 --DR---CYALTVRYPLMVVGTA-DRNLVVFNLQNPQTEFKRINS---------PLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 131 --~~---~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~~---------~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.. .+.+..|...|++++. |+.|+|||+++....+..... .....+.++.....|.+|.+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 01 2455668888999888 999999999986543332211 112346677777777766554
No 171
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.9e-19 Score=125.49 Aligned_cols=183 Identities=17% Similarity=0.198 Sum_probs=146.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|..+.|-|.--+|++++..|.++--|+..+. .+..+....+.+..|+-+|-+..+-+|..+|+|.+|.....++
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-----lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-----LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhh-----hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 46778888888889999999999999999885 3555666678888999999888999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEEE-CC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVFN-LQ 158 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d-~~ 158 (194)
+..+..|.++|.++++.++|+|++|.+.|..++|||+|+...+++... +...+++|..| +++.+....|.||. .-
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDAL 363 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhh
Confidence 999999999999999999999999999999999999999887777655 34556666554 55666667799994 22
Q ss_pred C--CCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 159 N--PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 159 ~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
. +......+.....++|..+.|.|-.+.|-+|-
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 2 12222333444556899999999888776653
No 172
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.7e-17 Score=121.28 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=121.5
Q ss_pred CeeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec-CCCeEEEE--e
Q 039044 2 SVSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-CDKQVKMW--P 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~--d 75 (194)
.+.+.+|+|||+.|+..+.+ ..|++||+.++.. .... ...+....++|+|||+.|+.+. .+|.+.|| |
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---~~l~---~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---KVVA---SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---EEEe---cCCCccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 47789999999999887653 4699999977642 1111 1222334689999999888764 67766555 6
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCCCC-ceeEEecCCeEEEEecCCCEEEEEcCCCcEE
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPN-PVHTQQLPDRCYALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 153 (194)
+.+++ ...+..+...+....|+|+|+.|+.++ .++...+|++.... .............++|+++.++..+.++ +.
T Consensus 279 ~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~-i~ 356 (429)
T PRK01742 279 ANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN-VV 356 (429)
T ss_pred CCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC-EE
Confidence 55544 455666777788999999999877655 56788888765322 2222222113467899999998887765 66
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+||+.+++... +.... ....+.|+|+|++++.++.
T Consensus 357 ~~Dl~~g~~~~--lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 357 KQDLTSGSTEV--LSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEE--ecCCC--CCCCceECCCCCEEEEEEc
Confidence 69998876432 22222 2357889999999998753
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=9.1e-17 Score=116.52 Aligned_cols=182 Identities=27% Similarity=0.460 Sum_probs=145.0
Q ss_pred eeeEEE-cCCCC-EEEEeeC-CCeEEEEeccc-CCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CCeEEEEecC
Q 039044 3 VSSLCF-SPKAN-ILVATSW-DNQVRCWEISR-GGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQVKMWPLL 77 (194)
Q Consensus 3 v~~~~~-~p~~~-~l~~~~~-d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~ 77 (194)
+..+.+ ++++. .++..+. |+.+.+|+... . ........|...+..++|+|+++.++.++. ++.+++|+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG-----KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred eeeEEEECCCcceEEeccCCCCccEEEEEecCCC-----eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 455556 77776 5555444 99999999987 3 235667789999999999999998888886 9999999999
Q ss_pred CCCceEEeccCCCcEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCcee-EEecCCeE-E-EEecCCCEEEEEcCCCcEE
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVH-TQQLPDRC-Y-ALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~-~~~~~~~~-~-~~~~~~~~l~~~~~dg~v~ 153 (194)
.+..+..+..|...+.+++|+|++. .+++++.|+.+++||.+.+..+. ....+... + .+++++..+++++.++.++
T Consensus 187 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEE
Confidence 8888888888999999999999988 55555899999999988776666 34443322 2 7889998899999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+|+++......... ..|...+.++.|.|++..++++
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEe
Confidence 99999776523333 4567889999999988888774
No 174
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=2.9e-17 Score=111.64 Aligned_cols=153 Identities=12% Similarity=0.152 Sum_probs=121.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEe--cCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSG--GCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~ 79 (194)
+|.++.++ .+.|++.-++ .|+|||+.+.+... .......+...+.++.+++.+.+++-- ...|.|.+||+.+-
T Consensus 89 ~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLh--TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 89 SILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLH--TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEEc--cceEEEEEcc-cEEEEecccceeeh--hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 45666665 3556666655 49999999875310 011222355567777777777788743 34689999999999
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCe-EEEEeCCCCCceeEEecCC-----eEEEEecCCCEEEEEcCCCcEE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQLPD-----RCYALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~v~ 153 (194)
++...+..|++.+-+++|+++|.+||+++..|+ |+|+.+.+++.+.++.... -.++|++++++|.+.+..++|+
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 999999999999999999999999999999986 6899999999998887643 4679999999999999999999
Q ss_pred EEECCC
Q 039044 154 VFNLQN 159 (194)
Q Consensus 154 ~~d~~~ 159 (194)
+|.+..
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
Confidence 998875
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=7.8e-18 Score=111.33 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=141.5
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~ 79 (194)
++++..|+. +-+++.+.+-|.+..|||++.+.. .....++..|..+|..++|...+ +.|++.+.||.||+||++..
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccc--cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 678889987 568899999999999999998621 12356778899999999999855 57889999999999999986
Q ss_pred CceEEec---cCCCcEEEEEecC-CCCEEEEeeCC-CeEEEEeCCCCC-ce---eEEecCCeEEEEecCC-CEEEEEcCC
Q 039044 80 GQPVTVA---MHDAPIKEVAWIP-EMNLLATGSWD-KTLKYWDTRQPN-PV---HTQQLPDRCYALTVRY-PLMVVGTAD 149 (194)
Q Consensus 80 ~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d-~~v~vwd~~~~~-~~---~~~~~~~~~~~~~~~~-~~l~~~~~d 149 (194)
+....+. ....+...++|++ +.+++++-..| ..|.|.|+|.+. ++ ..++..++.++|.|.. ..|.+++.|
T Consensus 230 eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 230 EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 6533332 2245778899988 56778776554 579999999865 33 4455667889999965 689999999
Q ss_pred CcEEEEECCCCCeee---EEeeCCCcceeeEEEEec-CCCeeEEEE
Q 039044 150 RNLVVFNLQNPQTEF---KRINSPLKYQTRCVAAFP-DQQGFLVCI 191 (194)
Q Consensus 150 g~v~~~d~~~~~~~~---~~~~~~~~~~v~~i~~~p-~~~~l~~~~ 191 (194)
.++-+||+.+...+. ..+.-...+.|+.+.|+| ....+++++
T Consensus 310 ~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 310 CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred ceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 999999998654310 011112457899999996 457777765
No 176
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=3.1e-18 Score=124.51 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=147.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC--
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS-- 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-- 78 (194)
+.|.+++|+|.|++|++.+.|.+-|+|---..+. .......-+-|.-.++|+++-+....|++|.+...+|+|+...
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeeccccccc-ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 4689999999999999999999999987652222 1223334455888899999998777888998889999996511
Q ss_pred -----------------------------------------C---------------------------------CceEE
Q 039044 79 -----------------------------------------G---------------------------------GQPVT 84 (194)
Q Consensus 79 -----------------------------------------~---------------------------------~~~~~ 84 (194)
| ..+..
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 0 00112
Q ss_pred eccCCCcEEEEEecCCCCEEEEeeCCC-----eEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 85 VAMHDAPIKEVAWIPEMNLLATGSWDK-----TLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
+.+|...|++++.+|++++++++.... .|++|+..+......+.. .++.++|+|++++|++.+.|+++.+|.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 335888999999999999999987654 589999988776655544 457899999999999999999999998
Q ss_pred CCCCCeeeEE--eeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 157 LQNPQTEFKR--INSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 157 ~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.......... ....|..-|.+..|+|++.++++++.
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASR 638 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecC
Confidence 8544322111 13568888999999999999999875
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=1.1e-17 Score=112.15 Aligned_cols=157 Identities=17% Similarity=0.257 Sum_probs=124.4
Q ss_pred CeeeEEEcC----C-CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCC----CeEEEecCCCeEE
Q 039044 2 SVSSLCFSP----K-ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG----TTVFSGGCDKQVK 72 (194)
Q Consensus 2 ~v~~~~~~p----~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~ 72 (194)
+|..++|++ + -..+++++. ..+.+|..................+......++|+-+. .+++.|+.-|.|+
T Consensus 40 ~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 40 PIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred ccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 577888885 2 245666664 57889988765411111111222467778888887643 4788999999999
Q ss_pred EEecCCCCceEEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCceeEEec------CCeEEEEecCCCEEEE
Q 039044 73 MWPLLSGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVHTQQL------PDRCYALTVRYPLMVV 145 (194)
Q Consensus 73 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~l~~ 145 (194)
|.|+.+++....+.+|...|+.+.++|. .+++++++.|..|++|++++..++..+.+ .+.++.|++++.++++
T Consensus 119 Vid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 119 VIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred EEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeec
Confidence 9999999999999999999999999995 57899999999999999999998876643 3467899999999999
Q ss_pred EcCCCcEEEEECCC
Q 039044 146 GTADRNLVVFNLQN 159 (194)
Q Consensus 146 ~~~dg~v~~~d~~~ 159 (194)
++.|.++.+|++..
T Consensus 199 cGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 199 CGMDHSLKLWRLNV 212 (385)
T ss_pred cCCcceEEEEecCh
Confidence 99999999999984
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=1.3e-16 Score=113.16 Aligned_cols=188 Identities=14% Similarity=0.189 Sum_probs=125.0
Q ss_pred eeeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEe-cCCCeEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSG-GCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~ 80 (194)
...++++|+++++++++. ++.|.+|++++..... . ......+......++++|++++++++ ..++.|.+||+++..
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-A-PIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-C-ceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 457899999998888765 7899999997532110 0 11111223446778899999988655 456999999997643
Q ss_pred ceEE-----ec-cCCCcEEEEEecCCCCEEEEeeC-CCeEEEEeCCC--CC--ceeEEec-C--------CeEEEEecCC
Q 039044 81 QPVT-----VA-MHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQ--PN--PVHTQQL-P--------DRCYALTVRY 140 (194)
Q Consensus 81 ~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vwd~~~--~~--~~~~~~~-~--------~~~~~~~~~~ 140 (194)
.+.. .. ........++|+|++++++++.. ++.|.+||+.. ++ .+..... + ...+.++|++
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 2211 11 12344678999999999988775 89999999974 22 2222221 1 1247889999
Q ss_pred CEEEEEcC-CCcEEEEECCCCCeeeEEee-CCCcceeeEEEEecCCCeeEEEEe
Q 039044 141 PLMVVGTA-DRNLVVFNLQNPQTEFKRIN-SPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 141 ~~l~~~~~-dg~v~~~d~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++++++.. ++.|.+|++........... .......+.+.++|+|++|+++..
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 99999865 68899999865432211111 111234578999999999998764
No 179
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1e-17 Score=119.11 Aligned_cols=168 Identities=16% Similarity=0.272 Sum_probs=131.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+|.+-.|+|||.-|+++++||.|++|.-... ....+.....+|.|++|.|+.+.++-+ ..+.+.+=.+.....
T Consensus 106 A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------LRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------LRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK 178 (737)
T ss_pred hhhhcccCCCCceeeeecCCceEEEEeccch------HHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc
Confidence 5778899999999999999999999986543 234555678899999999988766554 345677777777777
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee--EEecCCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+..+++|.+-|.++.|++..+++++|+.|-..++||-....... ..+.+.++++|.|+ +.++.++. .+++
T Consensus 179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------ 250 (737)
T KOG1524|consen 179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------ 250 (737)
T ss_pred eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeee------
Confidence 88899999999999999999999999999999999976433332 24557789999999 55665553 2333
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+..+..+.|..++|+|||..++.|.
T Consensus 251 -------~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 251 -------FSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -------ecCCCccceEEEEEcCCCceeeccc
Confidence 3344567799999999999988764
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=3.4e-17 Score=111.30 Aligned_cols=181 Identities=14% Similarity=0.195 Sum_probs=132.0
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCCCc
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+..++|++.-..++++..|-.|++|+-..... ..........++|++|-|. ++.|+.|+..| |.+|.......
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~p-----t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-----TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCC-----ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 56789999877899999999999999776421 2222334567999999994 45677777665 99997643211
Q ss_pred --------------eEEeccCCCcEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceeEE--ec-CCeEEEEecCCCEE
Q 039044 82 --------------PVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPNPVHTQ--QL-PDRCYALTVRYPLM 143 (194)
Q Consensus 82 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~--~~-~~~~~~~~~~~~~l 143 (194)
+....+| .+|++|+|.+||..+++++. |..|.|||..++..+.-. .. ...-+.|+|++.++
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 1112333 68999999999999999875 678999999987754333 22 34578999999999
Q ss_pred EEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 144 VVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 144 ~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++++-|+..++|+............ ..+.|....|+|+|+.|+....
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEc
Confidence 9999999999996654332222221 3358999999999999887653
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=5.8e-17 Score=108.74 Aligned_cols=186 Identities=15% Similarity=0.260 Sum_probs=136.1
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCccc--------ccccccccCCCCCeeEEEEe-------cCCCeEEEecCC
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGV--------ASVPKASISHDHPVLCSTWK-------DDGTTVFSGGCD 68 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~d 68 (194)
..+.|+|||.-|++-+.|..+++|++....-.. .............|..-+|. |+.+++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 467899999999999999999999986432100 01111112234557777776 567899999999
Q ss_pred CeEEEEecCCCCceEEecc--CCC---cEEEEEecCCCCEEEEeeCCCeEEEEeC-CCCCce---eE-------EecCCe
Q 039044 69 KQVKMWPLLSGGQPVTVAM--HDA---PIKEVAWIPEMNLLATGSWDKTLKYWDT-RQPNPV---HT-------QQLPDR 132 (194)
Q Consensus 69 ~~i~~~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~v~vwd~-~~~~~~---~~-------~~~~~~ 132 (194)
..|++||.-+|+....+++ |.. ...+++|+|||.+|+.| ..+.|+++|+ |.+... .+ ...-..
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999988776643 333 34689999999999855 5899999999 544321 11 122236
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 133 CYALTVRY-PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 133 ~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+++++|.. ..++.|+....+-||.-..... . .+..+|.+.|+.+.|.++|..|.+|..
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l-~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-L-QLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCc-e-eeecccCCCeeeEEeccCcCeeccccc
Confidence 88999955 5889999888888887766553 2 334478999999999999999998864
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=4.1e-16 Score=110.60 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=123.4
Q ss_pred eeeEEEcCCCCEEEEee-CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CCeEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVATS-WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~ 80 (194)
...++++|++++|++++ .++.|.+|++...... .... ..........+.++|+++++++++. ++.|.+|++++..
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--~~~~-~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--TFAA-ESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCCce--EEee-eecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 46789999999887765 4788999999732210 1111 1112334678999999998887764 7899999997432
Q ss_pred ----ceEEeccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCceeE-----E----ecCCeEEEEecCCCEEEEE
Q 039044 81 ----QPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVHT-----Q----QLPDRCYALTVRYPLMVVG 146 (194)
Q Consensus 81 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~~~~~~-----~----~~~~~~~~~~~~~~~l~~~ 146 (194)
.+..+. +......++++|+++++++++ .++.|.+||+.+...+.. . ....+.+.|+|++++++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 122222 334567789999999886555 569999999976432211 1 1123578999999999888
Q ss_pred cC-CCcEEEEECCCC--Ce-eeEEeeC-C----CcceeeEEEEecCCCeeEEEEe
Q 039044 147 TA-DRNLVVFNLQNP--QT-EFKRINS-P----LKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 147 ~~-dg~v~~~d~~~~--~~-~~~~~~~-~----~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+ ++.|.+|++... +. ....... + .......+.++|++++++++..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence 77 899999999742 21 1111111 0 1122346889999999988743
No 183
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=117.90 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=124.8
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCC---------
Q 039044 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSG--------- 79 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~--------- 79 (194)
|.+--++.|-.-|.+.+.|....+... .......-.+..++|++|-| +...++.+-.+|.+++||..-.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345567777777888888765532100 01111222457899999999 4456677778999999975311
Q ss_pred -------------------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---eEEecCCeEEEEe
Q 039044 80 -------------------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HTQQLPDRCYALT 137 (194)
Q Consensus 80 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~ 137 (194)
.++..+.--...|+..+|+|||++||+.+.||.++|||..+.+.+ +.....-.|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 112222223457889999999999999999999999999987765 4445566899999
Q ss_pred cCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEec
Q 039044 138 VRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 138 ~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
|||++|++|++|.-|.||.+...+ +.....+|+..|..++|.|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erR--VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERR--VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccce--EEEeccccccceeeEeecc
Confidence 999999999999999999998755 3344568999999999997
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.8e-16 Score=101.20 Aligned_cols=150 Identities=15% Similarity=0.269 Sum_probs=120.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.|+++-..|..+-++.++.|+.++-||++++. ....+.+|++.+.++.-......+++|++||++++||.++++.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~-----i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGR-----IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCE-----EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 57899999987777777789999999999984 4678889999999999866677899999999999999999988
Q ss_pred eEEecc---------CC-CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCc
Q 039044 82 PVTVAM---------HD-APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 82 ~~~~~~---------~~-~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
+..+.. |. ..|-+++- +..++++|+ ...+.+|+++..++...+..+.+.-.+......++++++...
T Consensus 191 v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~ 267 (325)
T KOG0649|consen 191 VSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNH 267 (325)
T ss_pred eEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccc
Confidence 766532 21 23445554 556887665 678999999999999888887776666667778888888888
Q ss_pred EEEEECCC
Q 039044 152 LVVFNLQN 159 (194)
Q Consensus 152 v~~~d~~~ 159 (194)
|.-|.+..
T Consensus 268 v~~~~l~G 275 (325)
T KOG0649|consen 268 VQSYTLNG 275 (325)
T ss_pred eeeeeecc
Confidence 88888764
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=1e-18 Score=129.59 Aligned_cols=110 Identities=20% Similarity=0.376 Sum_probs=101.5
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+|..|...|.++++|+.|..++||.+++.. ......+|.+.|+.++.+.+..++++++.|..|++|.+..+.
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccchh-----hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 369999999999999999999999999988774 367778999999999999999999999999999999999999
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
++..+.+|.+.|++++|+|-. +.+.||++++||.+
T Consensus 266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 999999999999999999953 77889999999987
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=6.7e-17 Score=118.86 Aligned_cols=190 Identities=19% Similarity=0.272 Sum_probs=136.6
Q ss_pred CCeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcc-cccccccccCCCCCeeEEEEecCCC--eEEEecCCCeEEEEec
Q 039044 1 DSVSSLCFSP-KANILVATSWDNQVRCWEISRGGTG-VASVPKASISHDHPVLCSTWKDDGT--TVFSGGCDKQVKMWPL 76 (194)
Q Consensus 1 ~~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~ 76 (194)
.+|.|+.|+| +..+++.|..+|.|.+||+...... ..........|..+++.+.|..+.. -|++++.||.|..|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 3689999999 5688899999999999999876542 2222344557899999999977544 4999999999999986
Q ss_pred CCC---------------------------------------------------------Cc------eEEeccCCCcEE
Q 039044 77 LSG---------------------------------------------------------GQ------PVTVAMHDAPIK 93 (194)
Q Consensus 77 ~~~---------------------------------------------------------~~------~~~~~~~~~~v~ 93 (194)
+.- .. ...+..|.++|+
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 421 00 112234678889
Q ss_pred EEEecCCCC-EEEEeeCCCeEEEEeCC-CCCceeEEecC---CeEEEEecCC-CEEEEEcCCCcEEEEECCCCCe-eeEE
Q 039044 94 EVAWIPEMN-LLATGSWDKTLKYWDTR-QPNPVHTQQLP---DRCYALTVRY-PLMVVGTADRNLVVFNLQNPQT-EFKR 166 (194)
Q Consensus 94 ~~~~~~~~~-~l~~~~~d~~v~vwd~~-~~~~~~~~~~~---~~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~-~~~~ 166 (194)
++.++|=+. .+++++ |.++++|... ...++...... ...++|+|.. ..++++..+|.+.+||+..... +...
T Consensus 403 ~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred eeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 999999444 455555 9999999887 55565554432 4578999965 4677788899999999986543 3333
Q ss_pred eeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 167 INSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 167 ~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
... .....+.+.|+++|+.+++|..
T Consensus 482 ~~~-~~~~l~~~~~s~~g~~lavGd~ 506 (555)
T KOG1587|consen 482 QKV-CSPALTRVRWSPNGKLLAVGDA 506 (555)
T ss_pred ccc-cccccceeecCCCCcEEEEecC
Confidence 322 3556678889999999998854
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=7e-17 Score=108.80 Aligned_cols=167 Identities=13% Similarity=0.185 Sum_probs=127.3
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecCCCCceE--EeccC
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPV--TVAMH 88 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~ 88 (194)
..+|++...|.|++||..++. ....+.++...++.+.|.. ....+.+++.||.|++||++...... .+.++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 458899999999999999864 3677778888889999977 46789999999999999999866543 34445
Q ss_pred C-CcEEEEEecCCCCEEEEee----CCCeEEEEeCCCCCc-e----eEEecCCeEEEEecC-CCEEEEEcCCCcEEEEEC
Q 039044 89 D-APIKEVAWIPEMNLLATGS----WDKTLKYWDTRQPNP-V----HTQQLPDRCYALTVR-YPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 89 ~-~~v~~~~~~~~~~~l~~~~----~d~~v~vwd~~~~~~-~----~~~~~~~~~~~~~~~-~~~l~~~~~dg~v~~~d~ 157 (194)
. .+..+++.+-.++.+++|. .+-.|.+||+|+.+. + ..+...++++.|+|. .+.|++|+.||-|.+||+
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 4 4667777766777888775 366899999998776 3 334456789999995 578999999999999999
Q ss_pred CCCCee-eEEeeCCCcceeeEEEEecCC
Q 039044 158 QNPQTE-FKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~v~~i~~~p~~ 184 (194)
...... .......+...|.++.|..++
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCC
Confidence 865422 111112355678999998887
No 188
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.2e-16 Score=107.45 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=128.8
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcccc---------cccccccCCCCCeeEEEEecCCCeEEEecC-CCe
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTGVA---------SVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQ 70 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~ 70 (194)
-|+|++|-|. +..|+.|+..| |.+|.......... .......+| .+|++|.|++||..+++++. |..
T Consensus 142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence 3789999995 57888888765 89998764322111 111122233 68999999999999998876 568
Q ss_pred EEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeE--EecCCeEEEEecCCCEEEEEc
Q 039044 71 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PNPVHT--QQLPDRCYALTVRYPLMVVGT 147 (194)
Q Consensus 71 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 147 (194)
|.|||..++..+.......+.++-+.|+||+.+|+.+.-|+..++|+..+ .....- ........+|+|+|.+|+...
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 99999999877654444567889999999999999999999999995543 222222 223456779999998876655
Q ss_pred CCCcEEEEECCCCCe-----------eeEEe-----------eCCCcceeeEEEEecCCCeeEEEEee
Q 039044 148 ADRNLVVFNLQNPQT-----------EFKRI-----------NSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 148 ~dg~v~~~d~~~~~~-----------~~~~~-----------~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
. |.-++|.+.-.++ ..... .....+++.+++|.|.|.+|++...+
T Consensus 300 s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 300 S-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred c-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 3 2234443321110 00000 01124678999999999999997653
No 189
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3e-16 Score=114.63 Aligned_cols=180 Identities=12% Similarity=0.113 Sum_probs=120.5
Q ss_pred CeeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCCeEEEEec-
Q 039044 2 SVSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDKQVKMWPL- 76 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~- 76 (194)
.+.+.+|+||++.|+..+.+ ..|.+||+.++.. ..+....+......|+|||+.|+ +.+.+|...+|.+
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 46788999999998877643 4599999987642 12222334566889999999876 5677777666654
Q ss_pred -CCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-CCeEEEEeC--CCCCceeE-Eec-CCeEEEEecCCCEEEEEcCCC
Q 039044 77 -LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDT--RQPNPVHT-QQL-PDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 77 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vwd~--~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~dg 150 (194)
..+ ....+..+........|+|||++|+..+. ++...+|.+ ..++.... ... ......|+|+|++++..+.++
T Consensus 271 ~~~~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 271 ADGS-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CCCC-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 443 34555555555677899999998886664 455566644 44432211 111 123578999999998776554
Q ss_pred ---cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 151 ---NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 151 ---~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|.+||+.+++.. .+... .......|+|||+.|+.+..
T Consensus 350 g~~~I~v~d~~~g~~~--~lt~~--~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 350 GAFKLYVQDLATGQVT--ALTDT--TRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CcEEEEEEECCCCCeE--EccCC--CCccCceECCCCCEEEEEEe
Confidence 5999999876532 22222 23467899999999988764
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.77 E-value=1.8e-16 Score=103.56 Aligned_cols=137 Identities=14% Similarity=0.228 Sum_probs=97.2
Q ss_pred eEEEEecCCCeEEEecC----------CCeEEEEecCCC-CceEEecc-CCCcEEEEEecCCCCEEEEe--eCCCeEEEE
Q 039044 51 LCSTWKDDGTTVFSGGC----------DKQVKMWPLLSG-GQPVTVAM-HDAPIKEVAWIPEMNLLATG--SWDKTLKYW 116 (194)
Q Consensus 51 ~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~v~vw 116 (194)
..+.|+|+|++|+.-.. -+...+|.++.. .....+.- ..++|.+++|+|+|+.|++. ..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999987765433 134556665332 23333332 34579999999999987655 356799999
Q ss_pred eCCCCCceeEEec-CCeEEEEecCCCEEEEEcC---CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 117 DTRQPNPVHTQQL-PDRCYALTVRYPLMVVGTA---DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 117 d~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|++ .+.+..+.. ....+.|+|+|+++++++. .|.|.+||.++.+. .... ....+..++|+|||++++++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~---~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTF---EHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-eecc---ccCcEEEEEEcCCCCEEEEEEe
Confidence 997 666666544 4568999999999999864 46799999996553 2222 2234789999999999999864
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.3e-15 Score=110.44 Aligned_cols=183 Identities=24% Similarity=0.398 Sum_probs=139.8
Q ss_pred CeeeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCC-eEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT-TVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~ 79 (194)
.|.+++|+|++..++.++. |+.+++|+..... .......|...+.+++|+|++. .+++++.|+.|++||...+
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred cEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 5778999999998888886 9999999998742 2445556899999999999998 5555599999999998877
Q ss_pred CceE-EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc-eeEE---ecCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 80 GQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP-VHTQ---QLPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 80 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-~~~~---~~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
.... .+..|.... -..|+|++..+++++.|+.+++||.+.... .... ......+.+.|++..+++++.|+.+.+
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~ 310 (466)
T COG2319 232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310 (466)
T ss_pred cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEE
Confidence 7776 577787775 448999998888999999999999987665 3333 233456788888888888888988999
Q ss_pred EECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 155 FNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 155 ~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
||.+............+...+..+.|.+++..++.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 998877643332223455578888883332455444
No 192
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.2e-17 Score=107.90 Aligned_cols=152 Identities=12% Similarity=0.138 Sum_probs=114.3
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC------------------------------------CceE
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG------------------------------------GQPV 83 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------------------------------------~~~~ 83 (194)
...+.+|.+.|++++|+.||++|++++.|+.|++|+++.- ..+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4566789999999999999999999999999999997531 1111
Q ss_pred Ee-----------------------ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEe
Q 039044 84 TV-----------------------AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALT 137 (194)
Q Consensus 84 ~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~ 137 (194)
.+ +.|...+.++-....+.+|++++.|..|.+||++ ++.+..+... ....+++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 00 0123344445555567899999999999999999 7777666543 3567899
Q ss_pred cCCCEEEEEcCCCcEEEEECC---CCC-eeeE--EeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 138 VRYPLMVVGTADRNLVVFNLQ---NPQ-TEFK--RINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 138 ~~~~~l~~~~~dg~v~~~d~~---~~~-~~~~--~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
|+|+++++++---.|++|..- .++ ++.. ....+|...|...+|+|+.+.+++.+.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 999999999998889999863 221 1111 224578999999999999999988764
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=6.4e-18 Score=119.88 Aligned_cols=94 Identities=24% Similarity=0.404 Sum_probs=83.4
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++|+.++|+|||++||+.+.||.+||||..+.+ .......--+...|++|+|||++|++|++|-.|.||.+...+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 368899999999999999999999999998864 234444455779999999999999999999999999999998
Q ss_pred ceEEeccCCCcEEEEEecC
Q 039044 81 QPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~ 99 (194)
.+..=++|+..|+.++|.|
T Consensus 366 VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccccccceeeEeecc
Confidence 8888899999999999984
No 194
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.4e-15 Score=111.20 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=120.8
Q ss_pred CeeeEEEcCCCCEEEEeeC---CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEe-cCCC--eEEEEe
Q 039044 2 SVSSLCFSPKANILVATSW---DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSG-GCDK--QVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~--~i~~~d 75 (194)
.+.+.+|+|||+.|+..+. +..+.+|++..+.. ..+...........|+|||+.|+.. +.+| .|.+||
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 4678999999998886542 45788999876642 1222223334568999999988754 4444 588999
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC-C--eEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcCC-
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD-K--TLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTAD- 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d- 149 (194)
+++++.. .+..+...+....|+|+|+.|+..+.+ + .|.++|+.+++...... .......++|+|++++..+.+
T Consensus 274 ~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 274 LASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence 9877554 444455567889999999988877754 3 45555776654322211 123467899999998876543
Q ss_pred --CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 150 --RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 150 --g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
..|.+||+.+++.. .+... .......|+|||+.++.+..
T Consensus 353 g~~~I~~~dl~~g~~~--~Lt~~--~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 353 GQQHIAKQDLATGGVQ--VLTDT--FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CCceEEEEECCCCCeE--EeCCC--CCCCCceECCCCCEEEEEEc
Confidence 34888999877532 23222 22356789999999988764
No 195
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.4e-16 Score=103.40 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=134.5
Q ss_pred CCeeeEEEcC--CCCEEEEeeCCCeEEEEecccCCc----ccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEE
Q 039044 1 DSVSSLCFSP--KANILVATSWDNQVRCWEISRGGT----GVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVK 72 (194)
Q Consensus 1 ~~v~~~~~~p--~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~ 72 (194)
++|..+.|.+ -|+.+|+++.|+++.||.-..... ........+......++.++|.| -|-.+++++.||.+|
T Consensus 60 ~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR 139 (361)
T KOG2445|consen 60 GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR 139 (361)
T ss_pred CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence 4678888865 389999999999999998632211 12223345556778999999999 567899999999999
Q ss_pred EEecCCCCceE------Eec-------cCCCcEEEEEecCC---CCEEEEeeCC-----CeEEEEeCCCCC--c--e---
Q 039044 73 MWPLLSGGQPV------TVA-------MHDAPIKEVAWIPE---MNLLATGSWD-----KTLKYWDTRQPN--P--V--- 124 (194)
Q Consensus 73 ~~d~~~~~~~~------~~~-------~~~~~v~~~~~~~~---~~~l~~~~~d-----~~v~vwd~~~~~--~--~--- 124 (194)
||+.-....+. ++. .+..+..|+.|+|. ..+|+.|+.+ +.++||...... . +
T Consensus 140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 99876543222 222 35667789999983 5678888765 478888765432 1 1
Q ss_pred eEEecCCeEEEEecCC----CEEEEEcCCCcEEEEECCCCC----------------eeeE--EeeCCCcceeeEEEEec
Q 039044 125 HTQQLPDRCYALTVRY----PLMVVGTADRNLVVFNLQNPQ----------------TEFK--RINSPLKYQTRCVAAFP 182 (194)
Q Consensus 125 ~~~~~~~~~~~~~~~~----~~l~~~~~dg~v~~~d~~~~~----------------~~~~--~~~~~~~~~v~~i~~~p 182 (194)
..+..+++.++|.|+- ..|++++.|| |+||.++... .+.. .....|+++|..+.|+-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 2233466789999853 5799999999 9999987411 1111 22356889999999999
Q ss_pred CCCeeEEE
Q 039044 183 DQQGFLVC 190 (194)
Q Consensus 183 ~~~~l~~~ 190 (194)
.|..|++.
T Consensus 299 tGtiLsSt 306 (361)
T KOG2445|consen 299 TGTILSST 306 (361)
T ss_pred eeeEEeec
Confidence 99888765
No 196
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1e-15 Score=112.30 Aligned_cols=179 Identities=14% Similarity=0.101 Sum_probs=124.9
Q ss_pred CeeeEEEcCCCCEEEEeeC---CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCCe--EEEEe
Q 039044 2 SVSSLCFSPKANILVATSW---DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDKQ--VKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~~~d 75 (194)
.+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+....|+|||+.|+ +.+.++. |.+||
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5778999999998887653 46899999977642 22334556677889999998775 5555554 77778
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-C--CeEEEEeCCCCCceeEE--ecCCeEEEEecCCCEEEEEcCC-
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-D--KTLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMVVGTAD- 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d- 149 (194)
+.+++. ..+..+........|+|+|++++..+. + ..|.++|+..++..... ........|+|+|+.|+....+
T Consensus 277 ~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 277 LRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred CCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 877654 445556666778999999998887764 3 36888898765543222 1223457899999998876643
Q ss_pred --CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 150 --RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 150 --g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..|.+||+.+... ..+... ..+....|+|||+.++...
T Consensus 356 ~~~~i~~~d~~~~~~--~~lt~~--~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 356 GQFSIGVMKPDGSGE--RILTSG--FLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred CceEEEEEECCCCce--EeccCC--CCCCCCeECCCCCEEEEEE
Confidence 3588888865442 222222 2467889999999988754
No 197
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.2e-15 Score=111.86 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=122.8
Q ss_pred CeeeEEEcCCCCEEEEeeC---CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCC--eEEEEe
Q 039044 2 SVSSLCFSPKANILVATSW---DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDK--QVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~~~d 75 (194)
.+.+.+|+||++.|+..+. +..|.+|++..+.. ..+...........|+|||+.++ +.+.+| .|.+||
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4678899999999888764 34699999977642 12222334455789999999775 445555 599999
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-CC--eEEEEeCCCCCceeEE-e-cCCeEEEEecCCCEEEEEcCCC
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVHTQ-Q-LPDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~vwd~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~dg 150 (194)
+.+++. ..+..+.......+|+|+|++|+..+. ++ .|.++|+.+++..... . ......+|+|+|++++..+.++
T Consensus 279 ~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 279 LGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence 987764 445555555678899999998887764 34 4777777665532221 1 1233679999999988765433
Q ss_pred ---cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 151 ---NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 151 ---~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|.+||+.+++.. .+... .......|+|||+.++....
T Consensus 358 ~~~~I~v~d~~~g~~~--~Lt~~--~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 358 GQYRIAVMDLSTGSVR--TLTPG--SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CceeEEEEECCCCCeE--ECCCC--CCCCCceECCCCCEEEEEEe
Confidence 5999999876532 22222 23456799999999887654
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=6e-17 Score=115.28 Aligned_cols=168 Identities=17% Similarity=0.279 Sum_probs=128.0
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcE
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPI 92 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 92 (194)
+.|+.++.||.+.+.+-... .......|.+.+.+-.|+|||.-|+++++||.|++|. ++|....++-....+|
T Consensus 76 d~~~i~s~DGkf~il~k~~r------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecccch------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCcee
Confidence 56888889999888775443 2455678999999999999999999999999999998 5666655666677899
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeC
Q 039044 93 KEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINS 169 (194)
Q Consensus 93 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 169 (194)
+|++|.|+.+.++.+- .+.+.+=-+.....+...+.+ .-++.|++..+.+++|++|-..++||..... . ....
T Consensus 149 ~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-L--f~S~ 224 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-L--FTSA 224 (737)
T ss_pred EEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-c--ccCC
Confidence 9999999877666554 355665555544333333333 3577888889999999999999999986532 2 3345
Q ss_pred CCcceeeEEEEecCCCeeEEEEe
Q 039044 170 PLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 170 ~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|..+|++++|.|+ +.++++++
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred hhccceeeeeeccc-cceeeeee
Confidence 68899999999999 66666654
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2e-16 Score=115.64 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=115.5
Q ss_pred eeeEEEcCCCCEEEEee-CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEe-cCCCeEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVATS-WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSG-GCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~ 80 (194)
...++|+|||+.|+.+. .+|.+.||.++.... ....+..+...+....|+|||+.|+.. ..++...+|++....
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34689999999888764 688777765543211 123334456667889999999977654 467888888875432
Q ss_pred -ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE-ecCCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 81 -QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 81 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
....+ .+.. ....|+|+|++++..+.++ +.+||+.+++..... ........|+|+++.++.++.++...+|++.
T Consensus 326 ~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 326 GGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 22223 3333 4678999999998887755 556999887643221 1233567899999999999999988887763
Q ss_pred C--CCeeeEEeeCCCcceeeEEEEecC
Q 039044 159 N--PQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 159 ~--~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
. +. ....+ ..+.+.+...+|+|-
T Consensus 402 ~~~G~-~~~~l-~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 402 SADGR-FKARL-PGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCC-ceEEc-cCCCCCCCCcccCCC
Confidence 2 32 22333 346677889999985
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=9.6e-17 Score=107.38 Aligned_cols=147 Identities=18% Similarity=0.343 Sum_probs=124.9
Q ss_pred CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC---ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-
Q 039044 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP- 121 (194)
Q Consensus 46 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~- 121 (194)
...+|+|.+|++|...++.+..+..|.||...... ...++..|...|+.++|+|..+.|++++.|+.-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999999999999999999999987665 45678899999999999999999999999999999998433
Q ss_pred C-----ceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCe--eeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 122 N-----PVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQT--EFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 122 ~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+ .+..+....+++.|+|.++.+++|+....|.||-.+.... ..+.+..++...|.+++|+|++-.|++|+.
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 2 2455667788999999999999999999999998875432 123456678889999999999999999873
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1.6e-15 Score=110.98 Aligned_cols=188 Identities=18% Similarity=0.345 Sum_probs=138.3
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccc-----------cc---------------------ccccccCCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV-----------AS---------------------VPKASISHDH 48 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~-----------~~---------------------~~~~~~~~~~ 48 (194)
|.|+|++|+.||+.+|+|+.|..|.+|+-....... .. ..........
T Consensus 54 DtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~ 133 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSS 133 (1081)
T ss_pred ceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhhe
Confidence 468999999999999999999999999865322100 00 0000011235
Q ss_pred CeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEec---cCCCcEEEEEecCCC-----CEEEEeeCCCeEEEEeCCC
Q 039044 49 PVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIPEM-----NLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 49 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~d~~v~vwd~~~ 120 (194)
.+.+++|..||++++.|-.+|+|.+-+.. ++....+. +.+.+|.+++|+|.. ..+++.....++..+.+..
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 67888999999999999999999998754 34333333 467899999999942 4788888888888888764
Q ss_pred CCce--eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 121 PNPV--HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 121 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
...- +.+.....|+.+.++|++++.|+.|+.+++|..+.-. .-.. ......|+.++..|+++++++|..
T Consensus 213 ~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTv-g~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 213 KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTV-GEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeE--Eeec-cccceeEEEEEEccCCceEEEEEc
Confidence 3322 3344556789999999999999999999999765422 2222 336789999999999999998864
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.1e-16 Score=111.83 Aligned_cols=161 Identities=14% Similarity=0.292 Sum_probs=129.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcc-----cccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTG-----VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
++|.|+++.++++.+++|+.||+|+.|++...... .......+.+|.+.+..+++++...+|++++.||++++|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 57999999999999999999999999987632210 1123456678999999999999999999999999999998
Q ss_pred cCCCCc--------------------------------------------eEEec-------cCCCcEEEEEecCCCCEE
Q 039044 76 LLSGGQ--------------------------------------------PVTVA-------MHDAPIKEVAWIPEMNLL 104 (194)
Q Consensus 76 ~~~~~~--------------------------------------------~~~~~-------~~~~~v~~~~~~~~~~~l 104 (194)
.....+ +..+. .....+..+.++|...+.
T Consensus 425 ~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 425 PTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred cCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 644322 00000 012346678889988999
Q ss_pred EEeeCCCeEEEEeCCCCCceeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 105 ATGSWDKTLKYWDTRQPNPVHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 105 ~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
+++..|+.|+++|..++++++.... ...++++.|+|.+|++++.|+.+++|.+....
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999999999999999887654 34788999999999999999999999987654
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=3e-16 Score=102.60 Aligned_cols=156 Identities=22% Similarity=0.367 Sum_probs=118.9
Q ss_pred CeeeEEEcC-CC--CEEEEeeCCCeEEEEecccCCc-----ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEE
Q 039044 2 SVSSLCFSP-KA--NILVATSWDNQVRCWEISRGGT-----GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKM 73 (194)
Q Consensus 2 ~v~~~~~~p-~~--~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 73 (194)
.+.|..+.- ++ -++++|.++|.+.+||+.++.. ...........|..++.++.+.+.-..=++|+.+..+.+
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 455665433 22 3577888999999999988632 111223344578999999999986666678888888999
Q ss_pred EecCCC--Cc--eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe---cCCeEEEEecCCCEEEEE
Q 039044 74 WPLLSG--GQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVG 146 (194)
Q Consensus 74 ~d~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 146 (194)
|.++.. .. ..++.-.+..|..+..-||++.+++++.|+.|+||..++..++..++ ...++++|+|+.+.++++
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc
Confidence 988643 21 12223335578899999999999999999999999999998875544 456899999999999999
Q ss_pred cCCCcEEEEEC
Q 039044 147 TADRNLVVFNL 157 (194)
Q Consensus 147 ~~dg~v~~~d~ 157 (194)
+.|+.|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999986
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.8e-16 Score=117.89 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=133.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCCc---
Q 039044 6 LCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQ--- 81 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--- 81 (194)
+.|......|++++.-..|+|||...... ....-.+....++++.-+. .|+.+++|..||.|++||.+....
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEeccccee----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 46766555666666688999999976532 1222223455667765544 568999999999999999886543
Q ss_pred eEEeccCCCc--EEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCce--eEE----e-c-CCeEEEEecCCCEEEEEcCCC
Q 039044 82 PVTVAMHDAP--IKEVAWIPEMNL-LATGSWDKTLKYWDTRQPNPV--HTQ----Q-L-PDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 82 ~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~~v~vwd~~~~~~~--~~~----~-~-~~~~~~~~~~~~~l~~~~~dg 150 (194)
+...+.|+.. |..+.+.+.|-- |++++.+|.|++||+|..... .++ + + ..+++.++++...+++|+. +
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c
Confidence 5667888877 999999986654 999999999999999984221 111 1 2 2578999999999999998 8
Q ss_pred cEEEEECCCCCeeeEE----eeCCCcceeeEEEEecCCCeeEEEEee
Q 039044 151 NLVVFNLQNPQTEFKR----INSPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~----~~~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
.|.||++...+....+ ......+.+.|++|+|..-.+++|++.
T Consensus 1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 9999999764432211 222345667999999999888888653
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.5e-15 Score=111.24 Aligned_cols=177 Identities=18% Similarity=0.245 Sum_probs=138.1
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCC---eEEEecCCCeEEEEecCCCCceE
Q 039044 7 CFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGT---TVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 7 ~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
.|++|+++++... +..|.+|...++.+ ...+..|..++..+.+.|... ++.+.+.+|.|++||...+..+.
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~~-----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTATGEC-----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecchHhh-----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 5788888887766 56899999999854 557888999999999988543 67799999999999864321000
Q ss_pred Ee------------------------------------------------------------------------------
Q 039044 84 TV------------------------------------------------------------------------------ 85 (194)
Q Consensus 84 ~~------------------------------------------------------------------------------ 85 (194)
.+
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 00
Q ss_pred -------------------------ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC-------CCceeEEecCCeE
Q 039044 86 -------------------------AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-------PNPVHTQQLPDRC 133 (194)
Q Consensus 86 -------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~-------~~~~~~~~~~~~~ 133 (194)
..|...+++.+++|++++++++..||.|.+|.--. ...++-+.....+
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 01444578899999999999999999999995322 2234445557789
Q ss_pred EEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 134 YALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 134 ~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
++|+++|.+|++|+.+|.+.+|.+.++++. +.....++|..+.++||+...++..+
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq---fLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQ---FLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcc---cccccCCeeEEEEEcCCCCeEEEEec
Confidence 999999999999999999999999998743 33447789999999999999887654
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=3.4e-14 Score=96.94 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=117.7
Q ss_pred eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEec---cCCCcEEEEEecC
Q 039044 23 QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA---MHDAPIKEVAWIP 99 (194)
Q Consensus 23 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~ 99 (194)
.+++++...... ........+|.++.++. ++|+..-.+ .|+|||+++.+.+.++. .+...+.++.+++
T Consensus 69 ~Lkv~~~Kk~~~------ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 69 KLKVVHFKKKTT------ICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN 139 (391)
T ss_pred eEEEEEcccCce------EEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC
Confidence 466666654421 11122456788888864 456665444 49999999988877664 4555677777777
Q ss_pred CCCEEEEee--CCCeEEEEeCCCCCceeEEe---cCCeEEEEecCCCEEEEEcCCCc-EEEEECCCCCeeeEEeeCCCcc
Q 039044 100 EMNLLATGS--WDKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTADRN-LVVFNLQNPQTEFKRINSPLKY 173 (194)
Q Consensus 100 ~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~~~~~~~~~~ 173 (194)
.+.+++.-+ ..|.|.+||..+-+++..+. .+..+++|+++|..||++++.|+ ||||.+.++++.+.........
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 777888643 36899999999888766655 45579999999999999999998 7999999988755544333456
Q ss_pred eeeEEEEecCCCeeEEEEe
Q 039044 174 QTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 174 ~v~~i~~~p~~~~l~~~~~ 192 (194)
.|.+++|+|++++|++.+.
T Consensus 220 ~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EEEEEEECCCCCeEEEecC
Confidence 7899999999999988753
No 207
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.7e-15 Score=109.77 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=142.0
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEeccc--CCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISR--GGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
+++.+++|+++++|+|..||.|.+|.=-. ... .....+.=|..+|.++.|+++|.+|++|+..+.+.+|.+.+++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccccccc---ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 57899999999999999999999997433 211 2344555688999999999999999999999999999999988
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe--------------cCCeEEEEecCCCEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--------------LPDRCYALTVRYPLMVVG 146 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~ 146 (194)
.+-+..-.++|..+.++|++.+.+....|+.|++....+.+...++. .-.+.++++|..+.++..
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln 363 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN 363 (792)
T ss_pred -cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec
Confidence 44455567899999999999999999999999999875443322211 112467888988888999
Q ss_pred cCCCcEEEEECCCCCeeeEEeeC---------CCcceeeEEEEecCCCeeEEE
Q 039044 147 TADRNLVVFNLQNPQTEFKRINS---------PLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~~~~~---------~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+..|.|.+||+-+.+..++.... .+.-.++.++.+-.|.++++.
T Consensus 364 ~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred CCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 99999999999877654332211 122346777777778887775
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.8e-16 Score=104.86 Aligned_cols=132 Identities=18% Similarity=0.257 Sum_probs=106.6
Q ss_pred CeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecC--CCCEEEEeeCCCeEEEEeCCCCCceeEEe--c----CC
Q 039044 60 TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP--EMNLLATGSWDKTLKYWDTRQPNPVHTQQ--L----PD 131 (194)
Q Consensus 60 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~----~~ 131 (194)
..++++..+|.|++||..+++.+..+++++..++.+.|.. ....+.+++.||+|++||+|.......+. . +-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688899999999999999999999999999999999987 46679999999999999999866443322 1 22
Q ss_pred eEEEEecCCCEEEEEcC----CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC-CeeEEEE
Q 039044 132 RCYALTVRYPLMVVGTA----DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ-QGFLVCI 191 (194)
Q Consensus 132 ~~~~~~~~~~~l~~~~~----dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~~ 191 (194)
.+++....++.+++|++ +-.|.+||.|..+++.......|...|+++.|+|.. ..|++|+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 35555557778888875 567999999998876777778899999999999976 4555554
No 209
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.69 E-value=2.6e-14 Score=104.62 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=122.6
Q ss_pred CeeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCC--eEEEEe
Q 039044 2 SVSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDK--QVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~~~d 75 (194)
.+.+.+|+|+++.|+.+..+ ..|++|++.++.. .....+.....+++|+||++.|+ +.+.++ .|.+||
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 36678899999999877653 4799999877642 22223445566789999998776 444444 588889
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC-C--eEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcCCC
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD-K--TLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg 150 (194)
+.+++. ..+..+........|+|+|++|+..+.. + .|.++|+.+++...... .......++|++++++..+.++
T Consensus 265 ~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 265 LDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 877643 3444455555677999999988776543 3 68888887665432221 2234678999999998888765
Q ss_pred ---cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 151 ---NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 151 ---~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|.+||+.+... ..+... .......|+|+|+.|+....
T Consensus 344 ~~~~i~~~d~~~~~~--~~l~~~--~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE--RVLTDT--GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CceEEEEEeCCCCCe--EEccCC--CCCCCceECCCCCEEEEEEe
Confidence 789999987543 222221 22456689999999887654
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4.3e-14 Score=94.76 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=113.9
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE-ecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS-GGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~ 80 (194)
+|.++.+.+ ..|++.- .+.|.+|...+...... ............+++-..+...|+. |-.-|.|+|-|+...+
T Consensus 96 ~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~--~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 96 EIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred ceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhhee--eeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 567777765 3466655 56899999886532111 1111122333444444334445554 4456999999998765
Q ss_pred c--eEEeccCCCcEEEEEecCCCCEEEEeeCCCe-EEEEeCCCCCceeEEecC-----CeEEEEecCCCEEEEEcCCCcE
Q 039044 81 Q--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQLP-----DRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~v 152 (194)
. ...+.+|...|.+++.+.+|..+||+|..|+ |+|||.++++.+.++... .-+++|+|+..+|+++|..|++
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 5 4678899999999999999999999999996 789999999999887653 3589999999999999999999
Q ss_pred EEEECCCC
Q 039044 153 VVFNLQNP 160 (194)
Q Consensus 153 ~~~d~~~~ 160 (194)
+||.++..
T Consensus 251 HiF~l~~~ 258 (346)
T KOG2111|consen 251 HIFSLRDT 258 (346)
T ss_pred EEEEeecC
Confidence 99998763
No 211
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=7.6e-14 Score=102.45 Aligned_cols=180 Identities=13% Similarity=0.095 Sum_probs=119.8
Q ss_pred CeeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCC--eEEEEe
Q 039044 2 SVSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDK--QVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~~~d 75 (194)
.+...+|+|||+.|+..+.+ ..|.+|++.++.. ..+....+......|+|||+.|+ +...+| .|.+||
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 46778999999988776543 3688889877642 12222233455789999999877 444454 688889
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-C--CeEEEEeCCCCCceeEE-ec-CCeEEEEecCCCEEEEEcCC-
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-D--KTLKYWDTRQPNPVHTQ-QL-PDRCYALTVRYPLMVVGTAD- 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~vwd~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~d- 149 (194)
+.+++. ..+..+........|+|+|+.++..+. + ..|.++|+.+++..... .. ......++|+++.++..+.+
T Consensus 274 ~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 274 LASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC
Confidence 887654 345555556677899999998776664 3 35777888776643221 11 12346899999998877653
Q ss_pred C--cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 150 R--NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 150 g--~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+ .|.++|+.+++.. .+... .......|+|||+.++....
T Consensus 353 ~~~~l~~~dl~tg~~~--~lt~~--~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 353 GNFHVAAQDLQRGSVR--ILTDT--SLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CceEEEEEECCCCCEE--EccCC--CCCCCceECCCCCEEEEEEe
Confidence 3 4888999876532 22222 12235689999999987653
No 212
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.68 E-value=3.2e-15 Score=110.05 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=126.9
Q ss_pred CeeeEEEcCCC--CEEEEeeCCCeEEEEecccCCc-ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPKA--NILVATSWDNQVRCWEISRGGT-GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~--~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
+|+++.|.-+| ..+++++.|..|. |+...... ...............+..|+..|..+++++++.|..|+||++++
T Consensus 549 sITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 68999998876 7888999998664 55443211 00011111222345689999999999999999999999999999
Q ss_pred CCceEEec---cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecCCCEEEEEcCCCcE
Q 039044 79 GGQPVTVA---MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 79 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~v 152 (194)
++..+.|+ .|.+..-.+...|.|.|+++...|+++.++|.-+++++..+.++. +.+.|.+|-+.|++.+.||-|
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 99998886 466778889999999999999999999999999999998877654 678999999999999999999
Q ss_pred EEEECC
Q 039044 153 VVFNLQ 158 (194)
Q Consensus 153 ~~~d~~ 158 (194)
.||.+.
T Consensus 708 FvW~lp 713 (1080)
T KOG1408|consen 708 FVWKLP 713 (1080)
T ss_pred EEEECc
Confidence 999886
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9e-16 Score=105.91 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=103.8
Q ss_pred eEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC
Q 039044 51 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP 130 (194)
Q Consensus 51 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~ 130 (194)
.+++|+++|..+++|+.||.+|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988878877788899999999999999999999999 9999999998655444321
Q ss_pred -----CeEEEEecCC---CEE-EE-EcCCCcEEEEECCCCCe----eeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 131 -----DRCYALTVRY---PLM-VV-GTADRNLVVFNLQNPQT----EFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 131 -----~~~~~~~~~~---~~l-~~-~~~dg~v~~~d~~~~~~----~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
-..+.|+.++ .++ ++ ....+.|+.||+..... +..... .....+.+++.+++|++++.|..
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEecc
Confidence 1244555554 222 22 22345577776653322 111111 12346899999999999999864
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.5e-15 Score=101.38 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=132.2
Q ss_pred eeEEEcCC-CCEEEEeeCC--CeEEEEecccCCccccc---ccccccCC--CCCeeEEEEecC--CCeEEEecCCCeEEE
Q 039044 4 SSLCFSPK-ANILVATSWD--NQVRCWEISRGGTGVAS---VPKASISH--DHPVLCSTWKDD--GTTVFSGGCDKQVKM 73 (194)
Q Consensus 4 ~~~~~~p~-~~~l~~~~~d--~~i~i~~~~~~~~~~~~---~~~~~~~~--~~~i~~~~~~~~--~~~l~~~~~d~~i~~ 73 (194)
..+.-+|. ..++++|+.. ..+.+||++.... ... .+....+- .-.++++.|-+. ...|++++.-+.+++
T Consensus 152 ~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~ 230 (412)
T KOG3881|consen 152 YDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRL 230 (412)
T ss_pred eeeccCCCCCceEecCchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEE
Confidence 34444553 3566779988 7899999987632 111 11111111 223577888887 789999999999999
Q ss_pred EecCCCC-ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE----EecCCeEEEEecCCCEEEEEcC
Q 039044 74 WPLLSGG-QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT----QQLPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 74 ~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 148 (194)
||.+.+. ++..+.....+++++...|+++.++++..-+.+..||++.++.... +.+..+.+..+|..+++++++.
T Consensus 231 YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 231 YDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred ecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc
Confidence 9998664 4567777788999999999999999999999999999999876533 4567788999999999999999
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
|..|+|+|+.+.+...+.. .+..+++|.+.++
T Consensus 311 DRyvRIhD~ktrkll~kvY---vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLLHKVY---VKSRLTFILLRDD 342 (412)
T ss_pred ceeEEEeecccchhhhhhh---hhccccEEEecCC
Confidence 9999999999855443333 3455677777554
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-14 Score=111.50 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=130.9
Q ss_pred CeeeEEEcCC-CCEEEEeeCCCeEEEEecccCCcc--cccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPK-ANILVATSWDNQVRCWEISRGGTG--VASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~-~~~l~~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
.|..++.++. +.++++|+.||+|++|+....... .............++.++.+.+.++.++.++.||.|++.++..
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence 3456667664 599999999999999998764321 1111222333567899999999999999999999999999876
Q ss_pred CCc-------eEEeccC-CCcEEEE-EecC-CCC-EEEEeeCCCeEEEEeCCCCCceeEEe-----cCCeEEEEecCCCE
Q 039044 79 GGQ-------PVTVAMH-DAPIKEV-AWIP-EMN-LLATGSWDKTLKYWDTRQPNPVHTQQ-----LPDRCYALTVRYPL 142 (194)
Q Consensus 79 ~~~-------~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~ 142 (194)
.+. .+....+ .+.+.+| +|.. .+. .++.+..-+.|..||+++.......+ +-+++++.+|.+++
T Consensus 1130 ~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1130 YNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred cccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence 211 1111122 2333333 3433 233 68888888999999999876554433 33578999999999
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCC
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ 185 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 185 (194)
+++|+..|.+.+||+|= +.+......++..+++.+..+|-.+
T Consensus 1210 lviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred EEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCC
Confidence 99999999999999984 4456667777778888888877543
No 216
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.9e-15 Score=106.38 Aligned_cols=185 Identities=18% Similarity=0.207 Sum_probs=142.9
Q ss_pred CeeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 2 SVSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
+|..+.|+..|.+|++...+ ..|.|+++..... ...+....+.+.++.|+|...+|+.++. ..|++||+..
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s-----Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k 596 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS-----QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK 596 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccc-----cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhH
Confidence 58899999999999988764 4688999877643 2334456678999999999888888864 4699999988
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC-CceeEE---ecCCeEEEEecCCCEEEEEcCCCcEEE
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP-NPVHTQ---QLPDRCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
...+..+......|..++.+|.|..|+.++.|+.+..+|+.-. ++.+++ ....+.+++++.-..+++|+.||++.|
T Consensus 597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 7777777777788999999999999999999999999999754 344444 344578899999999999999999998
Q ss_pred EECC-------CCCeeeEEeeCCCcce----eeEEEEecCCCeeEEEEe
Q 039044 155 FNLQ-------NPQTEFKRINSPLKYQ----TRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 155 ~d~~-------~~~~~~~~~~~~~~~~----v~~i~~~p~~~~l~~~~~ 192 (194)
|--. ++.........+|... |....|+|...+|.++.+
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA 725 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA 725 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence 8432 1111122233345443 788889999999988643
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.5e-13 Score=92.25 Aligned_cols=181 Identities=13% Similarity=0.196 Sum_probs=111.2
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCC------CeEEEEe
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCD------KQVKMWP 75 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d------~~i~~~d 75 (194)
..+++|+.|..-+++|..+| .+||+++.-.. ..........-.+..|-|- .++++ .|+.+ +.|.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke---~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKE---SASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhh---hhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 45689999999999999777 89999876432 0011111111222223332 33333 23222 4688998
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEee---------------------------------------------CC
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS---------------------------------------------WD 110 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------------------------------------------~d 110 (194)
=....++.++. ...+|.++.+.++ .+++.- .-
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 55555554443 3455555555443 222222 22
Q ss_pred CeEEEEeCCCCCc-----eeEEecCCeEEEEecCCCEEEEEcCCCc-EEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 111 KTLKYWDTRQPNP-----VHTQQLPDRCYALTVRYPLMVVGTADRN-LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 111 ~~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
|.|+|-|+...+. +..+.....+++++.+|..+|+++..|+ |||||.++++.............+.+++|+|+.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 4444444433222 2223344568899999999999999998 899999998865444444456789999999999
Q ss_pred CeeEEEEe
Q 039044 185 QGFLVCIH 192 (194)
Q Consensus 185 ~~l~~~~~ 192 (194)
.+|++++.
T Consensus 239 s~LavsSd 246 (346)
T KOG2111|consen 239 SWLAVSSD 246 (346)
T ss_pred cEEEEEcC
Confidence 99999864
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=5.2e-14 Score=102.97 Aligned_cols=171 Identities=11% Similarity=0.089 Sum_probs=113.3
Q ss_pred eeeEEEcCCCCEEEEe-eCCC--eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC-Ce--EEEEec
Q 039044 3 VSSLCFSPKANILVAT-SWDN--QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD-KQ--VKMWPL 76 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--i~~~d~ 76 (194)
+...+|+|||+.|+.. ..+| .|.+||+.++.. ..+..+...+....|+|||+.|+..+.+ +. |.++|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 3467999999988754 4454 588888876542 2233334567789999999988766543 44 444566
Q ss_pred CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeEEec-CCeEEEEecCCCEEEEEcCCCc-
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPVHTQQL-PDRCYALTVRYPLMVVGTADRN- 151 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~- 151 (194)
.+++. ..+..+........|+|+|++++..+.+ ..|.+||+.+++....... ......|+|+|+.|+..+.++.
T Consensus 319 ~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 319 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred CCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCc
Confidence 65543 3444344456678999999998876643 3588899987764322111 2345789999999999887764
Q ss_pred --EEEEECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 152 --LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 152 --v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+.++++..... ..+ ..+.+.+...+|+|-
T Consensus 398 ~~l~~~~~~G~~~--~~l-~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 398 SVLNLVSTDGRFK--ARL-PATDGQVKFPAWSPY 428 (429)
T ss_pred eEEEEEECCCCCe--EEC-ccCCCCcCCcccCCC
Confidence 67778754332 223 235667888899873
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.7e-15 Score=106.15 Aligned_cols=151 Identities=18% Similarity=0.286 Sum_probs=114.3
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEe-ccCCCcEEEEEecC--CCCEEEEeeCCCeEEEE
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIP--EMNLLATGSWDKTLKYW 116 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~vw 116 (194)
...+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999999877777665 58999999999999 46789999999999999
Q ss_pred eCCCCCc----------eeEE---ecCCeEEEEecCC-CEEEEEcCCCcEEEEECCCCCeeeEEee--------CCCcce
Q 039044 117 DTRQPNP----------VHTQ---QLPDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQTEFKRIN--------SPLKYQ 174 (194)
Q Consensus 117 d~~~~~~----------~~~~---~~~~~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~--------~~~~~~ 174 (194)
|+...+. .+.. ...++.++..|.+ ..+.++++||+++-+|+|.+........ .+.--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9985221 1111 1233567777877 6788999999999999997542111110 011134
Q ss_pred eeEEEEecCCC-eeEEE
Q 039044 175 TRCVAAFPDQQ-GFLVC 190 (194)
Q Consensus 175 v~~i~~~p~~~-~l~~~ 190 (194)
..|+..+|... +|++|
T Consensus 203 lk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVG 219 (758)
T ss_pred eeeeeecCCCCceEEec
Confidence 67899999764 45554
No 220
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.4e-13 Score=99.97 Aligned_cols=180 Identities=13% Similarity=0.086 Sum_probs=115.2
Q ss_pred CeeeEEEcCCCCEEEEeeC-CC--eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE-ecCCCe--EEEEe
Q 039044 2 SVSSLCFSPKANILVATSW-DN--QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS-GGCDKQ--VKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~--i~~~d 75 (194)
.+.+..|+|||+.|+..+. ++ .|.+||+.++.. ..............|+|||+.|+. .+.++. |.++|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 4567899999998887654 33 577888876542 111112233446899999998764 455664 77778
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-CC--eEEEEeCCCCCceeE-Eec-CCeEEEEecCCCEEEEEcC-C
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DK--TLKYWDTRQPNPVHT-QQL-PDRCYALTVRYPLMVVGTA-D 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~-d 149 (194)
+.+++. ..+..+.......+|+|+|++++..+. ++ .|.++|+.+++.... ... .....+++|+|++++..+. +
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC
Confidence 876654 445545556678899999998876654 33 577778876664322 121 1234689999998877655 3
Q ss_pred C--cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 150 R--NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 150 g--~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+ .|.++|+.+++.. .+... .......|+|||+.++....
T Consensus 372 g~~~I~~~dl~~g~~~--~lt~~--~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 372 GKFNIARQDLETGAMQ--VLTST--RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CceEEEEEECCCCCeE--EccCC--CCCCCceECCCCCEEEEEEe
Confidence 4 3566788776532 22221 11234589999999887653
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.6e-13 Score=99.68 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=111.3
Q ss_pred eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC---CCeEEEEecCCCCceEEeccCCCcEEEEEecC
Q 039044 23 QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 23 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
.|.++|.+... ...+..+...+...+|+|||+.|+..+. +..|.+||+.+++. ..+..+...+...+|+|
T Consensus 183 ~l~~~d~dg~~------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP 255 (435)
T PRK05137 183 RLAIMDQDGAN------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP 255 (435)
T ss_pred EEEEECCCCCC------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC
Confidence 67778875443 3445567788999999999998887653 46899999987765 34455666778899999
Q ss_pred CCCEEE-EeeCCC--eEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcC-CC--cEEEEECCCCCeeeEEeeCCC
Q 039044 100 EMNLLA-TGSWDK--TLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNPQTEFKRINSPL 171 (194)
Q Consensus 100 ~~~~l~-~~~~d~--~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~~~ 171 (194)
+|+.|+ +.+.++ .|.+||+.+++....... ......|+|+++.++..+. +| .|+++|+.+.+. ..+.. .
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~-~ 332 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--RRISF-G 332 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--EEeec-C
Confidence 998875 445555 477789887664332222 2356799999998887764 33 588888876543 22322 2
Q ss_pred cceeeEEEEecCCCeeEEEE
Q 039044 172 KYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 172 ~~~v~~i~~~p~~~~l~~~~ 191 (194)
...+....|+|||+.++...
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred CCcccCeEECCCCCEEEEEE
Confidence 34456788999999998754
No 222
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=7.4e-14 Score=106.77 Aligned_cols=191 Identities=14% Similarity=0.175 Sum_probs=127.3
Q ss_pred CeeeEEEcC--CCCEEEEeeCCCeEEEEecccCCcccccccc-------cccCCCCCeeEEEEecCCCeEEEecCCCeEE
Q 039044 2 SVSSLCFSP--KANILVATSWDNQVRCWEISRGGTGVASVPK-------ASISHDHPVLCSTWKDDGTTVFSGGCDKQVK 72 (194)
Q Consensus 2 ~v~~~~~~p--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 72 (194)
.|+.+.+-. |..++++|+.||.|+||+-..........+. ...+..+.-.-+.|.....+|++++.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 366666654 4578999999999999975433210001111 1111122224567887666777777788999
Q ss_pred EEecCCCCceEEec-cCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCc---ee---EEecC--CeEEEEecCCC-
Q 039044 73 MWPLLSGGQPVTVA-MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP---VH---TQQLP--DRCYALTVRYP- 141 (194)
Q Consensus 73 ~~d~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~---~~---~~~~~--~~~~~~~~~~~- 141 (194)
|||.........+. +....|+++.-+- .|+.++.|-.||.|++||.|...+ +. .+... +..+.+-+.|-
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 99998877666554 2345677776543 579999999999999999997653 21 12222 34566666664
Q ss_pred EEEEEcCCCcEEEEECCCC-CeeeEEeeCCC--cceeeEEEEecCCCeeEEEEe
Q 039044 142 LMVVGTADRNLVVFNLQNP-QTEFKRINSPL--KYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 142 ~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~--~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+++|+.+|.|++||+|.. ...+....... .+..+++..++....+++|+.
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 5999999999999999984 22222222222 335899999999999999873
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=7.8e-15 Score=102.84 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=139.3
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCccccccc------------------------cccc---------CCCCCe
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVP------------------------KASI---------SHDHPV 50 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~------------------------~~~~---------~~~~~i 50 (194)
+.+.+..+|+.++.|+.-|.|-.+|..+......... .... ....++
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v 212 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRV 212 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCch
Confidence 4577888999999999999999999876542110000 0000 012346
Q ss_pred eEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE---E
Q 039044 51 LCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---Q 127 (194)
Q Consensus 51 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~ 127 (194)
..+.|-|..-+|++++..|.++--|+..|+.+..+....+.+..|+-+|-...+-+|...|+|.+|...+.+++.. +
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH 292 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH 292 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence 6677888877899999999999999999999988887888899999999888899999999999999999887644 5
Q ss_pred ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 128 QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
..+++.+++.++|+++++.+.|..++|||+|...++.... . ..+...+++|..|
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~-t--p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR-T--PHPASNLSLSQKG 346 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceee-c--CCCcccccccccc
Confidence 6678899999999999999999999999999877543333 2 2345677777554
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2.8e-15 Score=98.18 Aligned_cols=116 Identities=17% Similarity=0.322 Sum_probs=96.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
+|.++.+.+.-..=++|+.+-.+..|+++...... .......-....+..+...||++.++|++.|+.||+|..++.++
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p 285 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP 285 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCcc-cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc
Confidence 67788888766666778888889999987653211 11222223445688999999999999999999999999999999
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeC
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~ 118 (194)
+..+..|...|++++|+|+...++.++.|+.|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999986
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=9.5e-14 Score=92.33 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=121.7
Q ss_pred eeeEEEcC---CCC-EEEEeeCCCeEEEEecccCCcccccccccccC-CCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 3 VSSLCFSP---KAN-ILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 3 v~~~~~~p---~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
+..+.|.- ++. .++-+..+|.|.+|.................. ......++.|++.+..++++..+|.+.+-+..
T Consensus 72 ~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t 151 (339)
T KOG0280|consen 72 EFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET 151 (339)
T ss_pred cceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc
Confidence 34455542 344 56666778888888776543211111111111 11135688899999999999999999966654
Q ss_pred CCCc--eEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC-ceeE----EecCCeEEEEe-cCCCEEEEEcC
Q 039044 78 SGGQ--PVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN-PVHT----QQLPDRCYALT-VRYPLMVVGTA 148 (194)
Q Consensus 78 ~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~-~~~~----~~~~~~~~~~~-~~~~~l~~~~~ 148 (194)
.... .+.++.|..+..-.+|+. +.+.+.+|++|+.+..||+|.++ .+.. +...+.++.-+ |.+.++++|+.
T Consensus 152 ~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 152 EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY 231 (339)
T ss_pred eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc
Confidence 4433 347889999999999987 45789999999999999999443 2222 12222233333 35679999999
Q ss_pred CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCC
Q 039044 149 DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ 185 (194)
Q Consensus 149 dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 185 (194)
|-.|++||.|+..++.... ...+.|+.+.++|.-.
T Consensus 232 De~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIF 266 (339)
T ss_pred ccceeeeehhcccCccccC--ccccceEEEEecchhh
Confidence 9999999999877665433 3457899999999643
No 226
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.9e-12 Score=92.59 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=116.2
Q ss_pred CEEE-EeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCc
Q 039044 13 NILV-ATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP 91 (194)
Q Consensus 13 ~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 91 (194)
++++ +-..++.|.+.|..+.+. ..........-..+.++||++++++.+.||.|.++|+.+.+.+.++... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SE
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CC
Confidence 4444 455689999999887642 3333333333456789999999999999999999999999988888754 45
Q ss_pred EEEEEecCCCCEEEEee-CCCeEEEEeCCCCCceeEEecCC----------eEEEEecCCC-EEEEEcCCCcEEEEECCC
Q 039044 92 IKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVHTQQLPD----------RCYALTVRYP-LMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 92 v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~-~l~~~~~dg~v~~~d~~~ 159 (194)
..+++++++|++++++. .++.+.++|.++.++++.+.... ..+..++... +++..-+.+.|-+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 68899999999988775 58999999999999888765421 2344466666 555556668898889877
Q ss_pred CCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 160 PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+....... ..........|+|++++++++..
T Consensus 160 ~~~~~~~~i-~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 160 PKNLKVTTI-KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp SSCEEEEEE-E--TTEEEEEE-TTSSEEEEEEG
T ss_pred ccccceeee-cccccccccccCcccceeeeccc
Confidence 653322222 23345678999999999988653
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.7e-13 Score=91.14 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=129.6
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCC-c
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-Q 81 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-~ 81 (194)
.++.|++.+..++++..+|.+.+-+...... ...+....|+-++...+|+. +.+.+++|+.|+.+..||++..+ .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l---e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVL---EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeee---eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 4788999999999999999988555444322 33456778999999999976 45789999999999999999443 3
Q ss_pred eEE-eccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCC-CCCceeEEecCC--eEEEEecC--CCEEEEEcCCCcEEE
Q 039044 82 PVT-VAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTR-QPNPVHTQQLPD--RCYALTVR--YPLMVVGTADRNLVV 154 (194)
Q Consensus 82 ~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~--~~~~~~~~--~~~l~~~~~dg~v~~ 154 (194)
+.. .+.|...|.++.-+| .+.++++|+.|..|++||.| .++++..-.... -.+..+|. ...++++..+| .+|
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki 280 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKI 280 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence 333 456888999999887 57899999999999999999 567776655443 34445553 23455555555 677
Q ss_pred EECCCCCee---eEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 155 FNLQNPQTE---FKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 155 ~d~~~~~~~---~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
-+......+ .......|.+-+..-.|......+++|+
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 777665444 2333344555556666644445666665
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.6e-13 Score=98.83 Aligned_cols=179 Identities=13% Similarity=0.183 Sum_probs=128.5
Q ss_pred eEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE
Q 039044 5 SLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 5 ~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
+++++. .-.+++.|+ ...|+-++++.+. ....+....+.++++..++-..+|++|+.+|.|..||.+....+.
T Consensus 138 Dm~y~~~scDly~~gs-g~evYRlNLEqGr-----fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGS-GSEVYRLNLEQGR-----FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred cccccCCCccEEEeec-CcceEEEEccccc-----cccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 344443 334444444 4567778887774 244455566889999999999999999999999999998876655
Q ss_pred Eec------cCCC-----cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE----ecCCeEEEEecCC-CEEEEEc
Q 039044 84 TVA------MHDA-----PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ----QLPDRCYALTVRY-PLMVVGT 147 (194)
Q Consensus 84 ~~~------~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~-~~l~~~~ 147 (194)
.+. .|.. .|+++.|+.+|-.+++|..+|.+.|||+|..+++..- ..+...+.|.+.+ +-.+...
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 443 2333 4999999999999999999999999999998876443 3345566665542 2233334
Q ss_pred CCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 148 ADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 148 ~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
....++|||-.+++. +..+.. ...++.+++-|++..++++..
T Consensus 292 Dk~~~kiWd~~~Gk~-~asiEp--t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 292 DKRILKIWDECTGKP-MASIEP--TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred chHHhhhcccccCCc-eeeccc--cCCcCceeeecCCceEEEecC
Confidence 456799999998874 444432 344899999999988888743
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=5.5e-13 Score=97.91 Aligned_cols=169 Identities=13% Similarity=0.102 Sum_probs=109.7
Q ss_pred eeEEEcCCCCEEE-EeeCCC--eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec-CCCe--EEEEecC
Q 039044 4 SSLCFSPKANILV-ATSWDN--QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-CDKQ--VKMWPLL 77 (194)
Q Consensus 4 ~~~~~~p~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~--i~~~d~~ 77 (194)
.+.+|+|||+.|+ +.+.+| .|.+||+.++.. ..+..+.......+|+||++.|+..+ .+|. |.++++.
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 4679999998775 445555 588888876642 22333444456789999999887665 3444 6666766
Q ss_pred CCCceEEeccCCCcEEEEEecCCCCEEEEeeCCC---eEEEEeCCCCCceeEEec-CCeEEEEecCCCEEEEEcCC---C
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK---TLKYWDTRQPNPVHTQQL-PDRCYALTVRYPLMVVGTAD---R 150 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d---g 150 (194)
+++. ..+..+.......+|+|+|++++..+.++ .|.+||+.+++....... ......|+|++++++..+.+ +
T Consensus 325 ~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 325 GGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRG 403 (433)
T ss_pred CCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCce
Confidence 6553 33332334455789999999988765443 699999987764422111 23456899999988776653 3
Q ss_pred cEEEEECCCCCeeeEEeeCCCcceeeEEEEec
Q 039044 151 NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 151 ~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
.++++++.... ...+. .+.+.+...+|+|
T Consensus 404 ~L~~~~~~g~~--~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 404 VLAAVSTDGRV--RQRLV-SADGEVREPAWSP 432 (433)
T ss_pred EEEEEECCCCc--eEEcc-cCCCCCCCCccCC
Confidence 58888886533 22222 2345677778877
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.8e-13 Score=99.21 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=109.3
Q ss_pred eeeEEEcCCCCEEE-EeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CCeEEEEec--CC
Q 039044 3 VSSLCFSPKANILV-ATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQVKMWPL--LS 78 (194)
Q Consensus 3 v~~~~~~p~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~--~~ 78 (194)
+.+.+|+|||+.|+ +.+.++...+|.++.... ....+..+........|+|||+.|+..+. ++...+|.+ .+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCC----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 45789999998876 567788877777654321 12233334445567889999998875543 456666654 44
Q ss_pred CCceEEeccCCCcEEEEEecCCCCEEEEeeCCC---eEEEEeCCCCCceeEEec-CCeEEEEecCCCEEEEEcCCC---c
Q 039044 79 GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK---TLKYWDTRQPNPVHTQQL-PDRCYALTVRYPLMVVGTADR---N 151 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg---~ 151 (194)
++. ..+..........+|+|+|++++..+.++ .|.+||+.+++....... ......|+|+++.|+..+.++ .
T Consensus 318 g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 318 GAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred Cce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEE
Confidence 432 22322233345678999999998877654 699999987764322211 235678999999888877543 3
Q ss_pred EEEEECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 152 LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 152 v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+++.++.... ...+. ...+.+...+|+|-
T Consensus 397 l~~~~~~g~~--~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSSDGRI--KQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred EEEEECCCCc--eEEee-cCCCCCCCCccCCC
Confidence 6666664322 22222 24456777888874
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=2.5e-13 Score=91.94 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=125.7
Q ss_pred eEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE-ecCCCeEEEEecCCCCceE
Q 039044 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS-GGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~ 83 (194)
-+.|+|+|+++|+++.- .+.|-|.++-+. ..+..--..|.-+.|..|..+++. ...++.|.+|++...+--.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 36899999999999865 677777666431 222222456778899988876654 5678899999999888888
Q ss_pred EeccCCCcEEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCcee--EEecCCeEEEEecCCCEEEEEcC------------
Q 039044 84 TVAMHDAPIKEVAWIPEMNL-LATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYALTVRYPLMVVGTA------------ 148 (194)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~------------ 148 (194)
.+.....++..+.|+|+|+. |.+...+-.|.+|.+.+.+... -.+.....++|+|+|++.+.++.
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 88888899999999999965 5566678999999998876433 23344578899999987766642
Q ss_pred -----------------------C-CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 149 -----------------------D-RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 149 -----------------------d-g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
| ..+.+||--- +++.......-.+..++|+|.++.|++|+-
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L---eykv~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL---EYKVYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchh---hheeeeeeeccceeEEEeccccceEEeecc
Confidence 1 2244554321 122122223345788899999999998864
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=1.3e-13 Score=101.80 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=117.3
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCc---ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGT---GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
.+++++|.| +-..++.|+.+|.|.-=+-..... ...........|.++|.++.++|=+..++..+.|-.++||...
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 468899998 457899999999886522221111 0111233456789999999999966555544459999999987
Q ss_pred -CCCceEEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCC--ceeEEecC---CeEEEEecCCCEEEEEcCCC
Q 039044 78 -SGGQPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN--PVHTQQLP---DRCYALTVRYPLMVVGTADR 150 (194)
Q Consensus 78 -~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~---~~~~~~~~~~~~l~~~~~dg 150 (194)
...++..+..+...|++++|+|. ...|+++..||.|.+||+.... ++.+.... ...+.+++.++.+++|...|
T Consensus 429 ~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 429 VIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred CCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCC
Confidence 66677777778888999999995 4568888889999999997643 44443322 24667888899999999999
Q ss_pred cEEEEECCC
Q 039044 151 NLVVFNLQN 159 (194)
Q Consensus 151 ~v~~~d~~~ 159 (194)
++++|++..
T Consensus 509 ~~~~~~l~~ 517 (555)
T KOG1587|consen 509 TTHILKLSE 517 (555)
T ss_pred cEEEEEcCc
Confidence 999999964
No 233
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=95.16 Aligned_cols=180 Identities=9% Similarity=0.028 Sum_probs=108.9
Q ss_pred eeeEEEcCCCCEE---EEeeCCC--eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CC----eEE
Q 039044 3 VSSLCFSPKANIL---VATSWDN--QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DK----QVK 72 (194)
Q Consensus 3 v~~~~~~p~~~~l---~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~----~i~ 72 (194)
+.+-+|+|||+.+ ++...+| .|.+.++..+.. ..+....+......|+|||+.|+..+. +| .+.
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~------~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG------KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCCCc------eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 3456899998742 2444444 466667766542 222223444556899999988876542 22 344
Q ss_pred EEecCCC--CceEEec-cCCCcEEEEEecCCCCEEEEee-CCCeEEEE--eCCC-CCceeEE---ecCCeEEEEecCCCE
Q 039044 73 MWPLLSG--GQPVTVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYW--DTRQ-PNPVHTQ---QLPDRCYALTVRYPL 142 (194)
Q Consensus 73 ~~d~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vw--d~~~-~~~~~~~---~~~~~~~~~~~~~~~ 142 (194)
.|++..+ .....+. .........+|+|||+.|+..+ .+|...+| ++.. +.....+ ........|+|+|+.
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence 4776653 2223333 2223456789999999887765 45644444 5432 2222222 123356789999998
Q ss_pred EEEEcCC---CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 143 MVVGTAD---RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 143 l~~~~~d---g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+..+.+ ..|.+||+.+++.. .+.. ....+....|+|||+.|+...
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDY--QLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeE--EccC-CCCCccceEECCCCCEEEEEE
Confidence 8876543 36999999887642 2222 233567899999999987643
No 234
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=2.4e-12 Score=92.75 Aligned_cols=176 Identities=10% Similarity=0.150 Sum_probs=135.4
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEe------c--------------CCCeEEEecCCC
Q 039044 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK------D--------------DGTTVFSGGCDK 69 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--------------~~~~l~~~~~d~ 69 (194)
|-..++|....||.+++|+...+..... ......-.+..++..|. | +...++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e--~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQE--FAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeee--eccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999887653111 11112223444455553 1 223678888999
Q ss_pred eEEEEecCCCCceEEec--cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC---CeEEEEecCCCEEE
Q 039044 70 QVKMWPLLSGGQPVTVA--MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP---DRCYALTVRYPLMV 144 (194)
Q Consensus 70 ~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~ 144 (194)
.|.+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+......+...... ...++++||+..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999988877664 68899999999998889999999999999999988877776543 46789999999998
Q ss_pred EEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecC-----CCeeEEEE
Q 039044 145 VGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD-----QQGFLVCI 191 (194)
Q Consensus 145 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~-----~~~l~~~~ 191 (194)
+++ ++|.+||+++.+. .....+|.++|++++|-.+ |.+++++.
T Consensus 161 ~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 876 6799999998763 3445679999999999887 77777654
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.5e-13 Score=94.91 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=127.9
Q ss_pred eeeEEEcCCCCEE-EEeeCCCeEEEEecccCCccc----ccccccc-------------------cCC-----------C
Q 039044 3 VSSLCFSPKANIL-VATSWDNQVRCWEISRGGTGV----ASVPKAS-------------------ISH-----------D 47 (194)
Q Consensus 3 v~~~~~~p~~~~l-~~~~~d~~i~i~~~~~~~~~~----~~~~~~~-------------------~~~-----------~ 47 (194)
-+.|..+|||+++ |+|..--.|++||+..-.... ...+..+ .-| .
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Confidence 4678999999875 567777899999987542100 0000000 000 1
Q ss_pred CCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE
Q 039044 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 127 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 127 (194)
..-..++++.-..-|+.++....|+-++++.|..+..+......++++..++...+|++|+.+|.|..||.|....+..+
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 11223444332333555556667888999999988888877789999999999889999999999999999987765444
Q ss_pred ec--------------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 128 QL--------------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 128 ~~--------------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
.. .++++.|+.+|-.+++|+.+|.+.|||++..+. ..........+|..+.|.+.
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-LLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-eeecccCCccceeeeccccc
Confidence 32 145788888899999999999999999998764 44444455677888998775
No 236
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.8e-13 Score=93.11 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=118.7
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC------CCceEEec-cCCCcEEEEEecCCCCEEEEeeCCCe
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS------GGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKT 112 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~ 112 (194)
...+.+|.+.|+++.|+.++++|++|+.|..+++|++.. .+++.... .|...|.+++|.....++.+|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 344567999999999999999999999999999999753 35555443 45589999999998899999999999
Q ss_pred EEEEeCCCCCceeEEec-----CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeE-EeeCCCcceeeEEEEecCCCe
Q 039044 113 LKYWDTRQPNPVHTQQL-----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFK-RINSPLKYQTRCVAAFPDQQG 186 (194)
Q Consensus 113 v~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~-~~~~~~~~~v~~i~~~p~~~~ 186 (194)
|..-|+++.+.+..+.. .+-.+..+|..+.+++.+.++.|.+||.+..+.+.. ...........++.|+|....
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999887766544 334678889999999999999999999987653222 222334455688899998766
Q ss_pred eEE
Q 039044 187 FLV 189 (194)
Q Consensus 187 l~~ 189 (194)
|+.
T Consensus 209 Li~ 211 (609)
T KOG4227|consen 209 LIL 211 (609)
T ss_pred eEE
Confidence 554
No 237
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-11 Score=89.77 Aligned_cols=178 Identities=8% Similarity=0.014 Sum_probs=114.7
Q ss_pred eeeEEEcCCCCE-EEEeeC---CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE-ecCC--CeEEEEe
Q 039044 3 VSSLCFSPKANI-LVATSW---DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS-GGCD--KQVKMWP 75 (194)
Q Consensus 3 v~~~~~~p~~~~-l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d--~~i~~~d 75 (194)
+....|+||++. ++..+. +..|.++|+.+++. ..+....+......|+|||+.++. .+.+ ..|.++|
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~------~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK------EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE------EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 456799999974 554333 34688888876642 222234455667889999987664 3333 4688888
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC-C--eEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCC---
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD-K--TLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTAD--- 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--- 149 (194)
+.+++. ..+..+........|+|||+.|+..+.. + .|.+.|+.+++.............++|+|+.++.....
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCc
Confidence 877653 4444444434456899999987776642 2 68888888766532222121235899999988776653
Q ss_pred ------CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 150 ------RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 150 ------g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..|.+.|+.++.. ..+... .......|+|||+.++...
T Consensus 343 ~~~~~~~~I~v~d~~~g~~--~~LT~~--~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI--RRLTAN--GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred ccCCCCcEEEEEECCCCCe--EECCCC--CCcCCeEECCCCCEEEEEE
Confidence 2588889887653 233222 2234688999999888764
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=2e-13 Score=103.84 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=121.1
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE-Ee
Q 039044 7 CFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TV 85 (194)
Q Consensus 7 ~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~ 85 (194)
.++++.-++++|+--+.|.+|+....+ .+..+.+|++.|..+.|+.||+++++.++|..+++|++++.+... ..
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn-----~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~ 214 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDN-----KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG 214 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccC-----CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc
Confidence 345566688999999999999988443 244688999999999999999999999999999999999988765 56
Q ss_pred ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec----CCeEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 86 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
-+|...|..+.|.|+ ++++++.|-+.++|+... +.+..+.. +...++..+....+++++.||.+++||+...
T Consensus 215 fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 689999999999998 999999999999996653 33333332 3356778888889999999999999998753
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.4e-13 Score=94.57 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=111.2
Q ss_pred eeeEEEcCC--CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 3 VSSLCFSPK--ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 3 v~~~~~~p~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
++++.|-|. ...|++++.-+.+++||...+.. ....+.-.+.+++++...|+++++++|...+.+..||+++++
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR----PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCc----ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 567888886 78999999999999999987754 344455568899999999999999999999999999999998
Q ss_pred ceEE-eccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEec
Q 039044 81 QPVT-VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTV 138 (194)
Q Consensus 81 ~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~ 138 (194)
.... +.+..+.|+++..+|.+++++++|.|+.|+|+|+.+.++++.... ..+.+-+.+
T Consensus 281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~ 341 (412)
T KOG3881|consen 281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRD 341 (412)
T ss_pred eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecC
Confidence 8766 788899999999999999999999999999999999777766543 233444433
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=6.8e-11 Score=84.47 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=121.5
Q ss_pred eeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccc-ccc--------ccCCCCCeeEEEEecCCCeEEEecC-CCeEE
Q 039044 4 SSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASV-PKA--------SISHDHPVLCSTWKDDGTTVFSGGC-DKQVK 72 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~-~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~ 72 (194)
..++++|++++|+++.. +|.+.++++.......... ... .........++.++|+++++++... ...|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 45889999999888864 8999999998753211110 000 0112345789999999998887643 45799
Q ss_pred EEecCCCCc-eE---Eec-cCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCC--CCCc--eeEEec---------CCeE
Q 039044 73 MWPLLSGGQ-PV---TVA-MHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTR--QPNP--VHTQQL---------PDRC 133 (194)
Q Consensus 73 ~~d~~~~~~-~~---~~~-~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~--~~~~--~~~~~~---------~~~~ 133 (194)
+|++..... +. .+. ......+.++|+|+++++.... .++.|.++++. .++. +..... ....
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 999977652 21 222 3446689999999999876654 57889999988 3321 122211 2357
Q ss_pred EEEecCCCEEEEEcC-CCcEEEEECCC--CCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 134 YALTVRYPLMVVGTA-DRNLVVFNLQN--PQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 134 ~~~~~~~~~l~~~~~-dg~v~~~d~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.++|++++|+++.. ...|.+|++.. +...............+.++++|+|++|+++.+
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 899999999888765 66799999943 332222222212344799999999999998764
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=6.6e-12 Score=85.19 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=76.5
Q ss_pred CcEEEEEecCCCCEEEEeeC--CCeEEEEeCCCCCce--eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 90 APIKEVAWIPEMNLLATGSW--DKTLKYWDTRQPNPV--HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~--d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
..+.-++|++|..++++-.+ -+.+.+||++..+.. -....+.+.+.++|....++.+.....+++|...... .
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~---~ 395 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR---V 395 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce---E
Confidence 34667999999999988764 367999999987643 3345677889999999999999888889999987633 2
Q ss_pred EeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 166 RINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 166 ~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.........|..+.|.-+|..++.+..
T Consensus 396 V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 396 VGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred EecCCCCceeeeEEecCCCcEEEEEcC
Confidence 222223467999999999998887643
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-11 Score=89.76 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=108.6
Q ss_pred eeEEEcCCCCEEEEeeC-CC----eEEEEecccCCccccccccccc-CCCCCeeEEEEecCCCeEEEec-CCCeEEEE--
Q 039044 4 SSLCFSPKANILVATSW-DN----QVRCWEISRGGTGVASVPKASI-SHDHPVLCSTWKDDGTTVFSGG-CDKQVKMW-- 74 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~-d~----~i~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~-- 74 (194)
...+|+|||+.|+..+. +| .+..|++..+.. .....+. ..........|+|||+.|+..+ .+|...+|
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI---GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCC---CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 45689999988876543 22 344466654311 0111122 2223345779999999877654 46655555
Q ss_pred ecCC-CCceEEeccCCCcEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcC
Q 039044 75 PLLS-GGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 75 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 148 (194)
++.. +.....+..+...+....|+|+|++|+..+.+ ..|.+||+.+++...... .......|+|+++.|+....
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 4432 23344455555667789999999998877653 479999998876543322 23356889999998775433
Q ss_pred ---CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 149 ---DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 149 ---dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
...|+++|+.+++.. .+.. ..+.+...+|+|-.
T Consensus 391 ~~g~~~L~~vdl~~g~~~--~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTR--KIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEE--Eeec-CCCcccCceecCCC
Confidence 346888999876532 2222 33456778888854
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.5e-11 Score=90.08 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=107.6
Q ss_pred eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC---CeEEEEecCCCCceEEeccCCCcEEEEEecC
Q 039044 23 QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 23 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
.|.++|..... ...+..+...+....|+|++++|+.+..+ ..|++||+.+++... +..+...+..++|+|
T Consensus 171 ~l~~~d~~g~~------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence 57777765432 23344566678899999999998876543 479999998875533 334556677899999
Q ss_pred CCCEEEEe-eCCC--eEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcC-CC--cEEEEECCCCCeeeEEeeCCC
Q 039044 100 EMNLLATG-SWDK--TLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNPQTEFKRINSPL 171 (194)
Q Consensus 100 ~~~~l~~~-~~d~--~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~~~ 171 (194)
+|+.|+.. +.++ .|++||+.+++...... .......|+|+++.|+..+. ++ .|+++|+.+.+. ..+.. .
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l~~-~ 320 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RRLTF-R 320 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeec-C
Confidence 99877644 4343 58889988765332222 12345688999998877654 33 588888876553 22222 3
Q ss_pred cceeeEEEEecCCCeeEEEEe
Q 039044 172 KYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 172 ~~~v~~i~~~p~~~~l~~~~~ 192 (194)
........|+|+|+.++.+..
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CCCccCeEECCCCCEEEEEEc
Confidence 345678899999999888653
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=9e-13 Score=89.65 Aligned_cols=187 Identities=14% Similarity=0.205 Sum_probs=126.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCC------------CCCeeEEEEecCCC--eEEEecC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISH------------DHPVLCSTWKDDGT--TVFSGGC 67 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~--~l~~~~~ 67 (194)
-|.++.|...|++||+|.++|.|.+|.-..............+.| ...|..+.|.++++ .++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 478999999999999999999999997554322111112222223 35688999988664 5677778
Q ss_pred CCeEEEEecCCCCc-----------------------------------eEEe-ccCCCcEEEEEecCCCCEEEEeeCCC
Q 039044 68 DKQVKMWPLLSGGQ-----------------------------------PVTV-AMHDAPIKEVAWIPEMNLLATGSWDK 111 (194)
Q Consensus 68 d~~i~~~d~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~ 111 (194)
|.+|++|.+..... .+.+ .+|...|+++.++.|+..++++. |-
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dL 185 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DL 185 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ce
Confidence 99999998753211 0111 24778899999999998888764 88
Q ss_pred eEEEEeCCCCCceeE-Eec----------CCeEEEEecCC-CEEEEEcCCCcEEEEECCCCCee------eEEeeCC---
Q 039044 112 TLKYWDTRQPNPVHT-QQL----------PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQTE------FKRINSP--- 170 (194)
Q Consensus 112 ~v~vwd~~~~~~~~~-~~~----------~~~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~------~~~~~~~--- 170 (194)
.|.+|++.-...-.. ... -.++..|+|.. +.++-.++.|+|++-|+|..... +.....+
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 999999875432211 111 12466788854 56777888999999999953211 1111111
Q ss_pred -----CcceeeEEEEecCCCeeEE
Q 039044 171 -----LKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 171 -----~~~~v~~i~~~p~~~~l~~ 189 (194)
.-..|..+.|+++|+++++
T Consensus 266 sffseiIsSISDvKFs~sGryils 289 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILS 289 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEE
Confidence 1245889999999999886
No 245
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=4.6e-14 Score=105.53 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=115.1
Q ss_pred ccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 41 KASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 41 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
..+.+|...|.|..|...|.++++|+.|..++||..+++.++....+|.+.|+.++.+.+..++++++.|..|++|.+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 34567999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CCceeE---EecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEee----CCCcceeeEEEEecCCCeeEEEE
Q 039044 121 PNPVHT---QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRIN----SPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 121 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.++.. +.+.+++++|+|-. +.+.||++++||.+-.. ..... ...+.-+.++.|..++..+++++
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccc--cccCCCCCCcccccceeeeecccccccccccc
Confidence 987654 45566788888866 67789999999998211 11111 11223455566666665555543
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=8e-13 Score=93.45 Aligned_cols=187 Identities=19% Similarity=0.232 Sum_probs=140.4
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec--CCCeEEEecCCCeEEEEecCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~ 78 (194)
|.|+.+.|+..|..|++|+.|..|.+||...... ......+|...|..-+|-| +.+.+++.+.||.+++=.+..
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4578999999999999999999999999987752 3445567888888888988 446899999999999887654
Q ss_pred CCce---EEeccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEEec---------CCeEEEEecCCC-EEE
Q 039044 79 GGQP---VTVAMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQL---------PDRCYALTVRYP-LMV 144 (194)
Q Consensus 79 ~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~-~l~ 144 (194)
.+.. ..+..|.++|..++.-|+. .-|.+++.|+.+.-+|++...+...+.. .-..++..|... .++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 4332 3456799999999999954 4699999999999999998765433211 123567777654 789
Q ss_pred EEcCCCcEEEEECCCCCee-----eEEee-----CCCcceeeEEEEecCCCeeEEEE
Q 039044 145 VGTADRNLVVFNLQNPQTE-----FKRIN-----SPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 145 ~~~~dg~v~~~d~~~~~~~-----~~~~~-----~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+++.|..+++||.+..... ...+. ......|++++++.++.-++++.
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence 9999999999999865432 11111 12345689999998877666653
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=3.5e-10 Score=80.81 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=123.1
Q ss_pred eeeEEEcCCCCEEEEeeC----CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec-CCCeEEEEecC
Q 039044 3 VSSLCFSPKANILVATSW----DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-CDKQVKMWPLL 77 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~ 77 (194)
..-++++|++++|.+..+ ++.|..|++....... ...............++++|++++|+++. .+|.|.++++.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 356889999999998877 4689999988752111 11122222445567899999999998886 48999999998
Q ss_pred CCCceEEe---c-----------cCCCcEEEEEecCCCCEEEEeeC-CCeEEEEeCCCCC--ce--eEEec----CCeEE
Q 039044 78 SGGQPVTV---A-----------MHDAPIKEVAWIPEMNLLATGSW-DKTLKYWDTRQPN--PV--HTQQL----PDRCY 134 (194)
Q Consensus 78 ~~~~~~~~---~-----------~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vwd~~~~~--~~--~~~~~----~~~~~ 134 (194)
....+... . .......++.|+|+++++++... ...|.+|++.... .. ..... ..+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 74332221 1 12345789999999998887653 4589999987655 22 22222 23689
Q ss_pred EEecCCCEEEEEcC-CCcEEEEECC--CCCee-eEEee---CCC--cceeeEEEEecCCCeeEEEEe
Q 039044 135 ALTVRYPLMVVGTA-DRNLVVFNLQ--NPQTE-FKRIN---SPL--KYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 135 ~~~~~~~~l~~~~~-dg~v~~~d~~--~~~~~-~~~~~---~~~--~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|+|+++++++..+ ++.|.++++. ++... ..... ... ......|.++|||++|.++..
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 99999998877665 7779999988 33211 11111 111 125688999999999988754
No 248
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.45 E-value=4.8e-12 Score=87.48 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=105.7
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec---CCCeEEEEecCCCC
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG---CDKQVKMWPLLSGG 80 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~ 80 (194)
..+..+|.++++|.+..+....++++...... ........-...-+.+.|..+......+. ....+.+|....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG--AKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc--ceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 34566788999999988888778887765420 11111112223334555555554444443 4445555655543
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC----CeEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP----DRCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
+...+.+|-..+++++|+||+++++++..|..|++-.....-.+..+-.. +..+++-++ ..|++++.|++|++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 33445689999999999999999999999999999887766666655442 234555444 4589999999999999
Q ss_pred CCCCCee
Q 039044 157 LQNPQTE 163 (194)
Q Consensus 157 ~~~~~~~ 163 (194)
+++++.+
T Consensus 222 ~~sgk~L 228 (390)
T KOG3914|consen 222 ITSGKLL 228 (390)
T ss_pred cccCCcc
Confidence 9988753
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=5.6e-10 Score=76.68 Aligned_cols=190 Identities=13% Similarity=0.168 Sum_probs=129.9
Q ss_pred eeeEEEcCCCCEEEEeeCC---CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CCeEEEEecCC
Q 039044 3 VSSLCFSPKANILVATSWD---NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQVKMWPLLS 78 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~ 78 (194)
++=|+|+|+++.|.++.++ |.|.-|.++...-.. ...........+.+.+++++++++++++.. .|.|.++.++.
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 4568999999999888665 678888887642111 112222223344488999999999998865 57899999876
Q ss_pred CCceE---EeccCCCc----------EEEEEecCCCCEEEEeeC-CCeEEEEeCCCCCceeEEe------cCCeEEEEec
Q 039044 79 GGQPV---TVAMHDAP----------IKEVAWIPEMNLLATGSW-DKTLKYWDTRQPNPVHTQQ------LPDRCYALTV 138 (194)
Q Consensus 79 ~~~~~---~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~vwd~~~~~~~~~~~------~~~~~~~~~~ 138 (194)
...+. ....|... +....+.|+++++++... ...|.+|++..+.....-. ...+.+.|+|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp 200 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP 200 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC
Confidence 32221 12224333 788899999999998864 3579999998665432211 2347899999
Q ss_pred CCCEEEEEcC-CCcEEEEECCCCCeeeEEe------eC--CCcceeeEEEEecCCCeeEEEEee
Q 039044 139 RYPLMVVGTA-DRNLVVFNLQNPQTEFKRI------NS--PLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 139 ~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~------~~--~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
++++.++.++ +++|-+|........+..+ .. ........|..+|||++|.++-.+
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence 9999888776 8999999988743222222 11 123456788999999999887443
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=9.5e-11 Score=86.25 Aligned_cols=159 Identities=12% Similarity=0.098 Sum_probs=103.9
Q ss_pred eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC---CeEEEEecCCCCceEEeccCCCcEEEEEecC
Q 039044 23 QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 23 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
.|.++|.+... ......+...+....|+|||+.|+..+.+ ..|.+|++.+++... +......+....|+|
T Consensus 180 ~l~~~d~~g~~------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGAR------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCC------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC
Confidence 36666765442 23344566788999999999988765533 368999998776533 333344556789999
Q ss_pred CCCEEEE-eeCCC--eEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcC-CC--cEEEEECCCCCeeeEEeeCCC
Q 039044 100 EMNLLAT-GSWDK--TLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNPQTEFKRINSPL 171 (194)
Q Consensus 100 ~~~~l~~-~~~d~--~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~~~ 171 (194)
+|++|+. .+.++ .|.+||+.+++...... .......|+|+++.++..+. +| .|+++|+.+++... +...
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~--lt~~- 329 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER--VTFV- 329 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--eecC-
Confidence 9998774 44444 68888998766432211 22345789999998776654 33 47777887665322 2111
Q ss_pred cceeeEEEEecCCCeeEEEE
Q 039044 172 KYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 172 ~~~v~~i~~~p~~~~l~~~~ 191 (194)
........|+|+|+.++...
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CCCccceEECCCCCEEEEEE
Confidence 12234578999999988764
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=6e-13 Score=106.60 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=116.0
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC--
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-- 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-- 79 (194)
.|.++.=+|...+.++|+.||.+++|....+.. .......+. ..++.+.|+.+|+.+..+..||.+.+|.+...
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~---v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~ 2285 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ---VVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY 2285 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCe---EEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce
Confidence 467777889889999999999999999887653 112222233 78888999999999988888999988875311
Q ss_pred -----------------------------------------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeC
Q 039044 80 -----------------------------------------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 80 -----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~ 118 (194)
..-..-..|.+.++++++.|..+.|++||.+|.|.+||+
T Consensus 2286 ~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 000011458888999999999999999999999999999
Q ss_pred CCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 119 RQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
+..+..+.++. +. ...++++|+..|.++||++....
T Consensus 2366 rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2366 RQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred HHHHHHHHhhh------hh-hhheeeccCcccceEEEEccccc
Confidence 98888877765 33 56789999999999999998764
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-10 Score=86.04 Aligned_cols=159 Identities=12% Similarity=0.088 Sum_probs=102.0
Q ss_pred eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-C--CeEEEEecCCCCceEEeccCCCcEEEEEecC
Q 039044 23 QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-D--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 23 ~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
.+.++|.+... ...+......+....|+|||+.|+..+. + ..|.+||+.+++... +..........+|+|
T Consensus 199 ~l~i~d~dG~~------~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYN------EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCC------ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC
Confidence 46666665442 2334455678889999999998886643 2 358889988776432 322233445789999
Q ss_pred CCCEEEE-eeCCC--eEEEEeCCCCCceeEEe--cCCeEEEEecCCCEEEEEcC-CC--cEEEEECCCCCeeeEEeeCCC
Q 039044 100 EMNLLAT-GSWDK--TLKYWDTRQPNPVHTQQ--LPDRCYALTVRYPLMVVGTA-DR--NLVVFNLQNPQTEFKRINSPL 171 (194)
Q Consensus 100 ~~~~l~~-~~~d~--~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~~~ 171 (194)
+|+.|+. .+.++ .|.++|+.+++...... .......|+|+++.++..+. ++ .|+++|+.+++.. .+.. .
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~--~Lt~-~ 348 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS--RLTF-E 348 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EEec-C
Confidence 9998765 45555 47888988765432222 22356789999998876654 34 4677787766532 2221 1
Q ss_pred cceeeEEEEecCCCeeEEEE
Q 039044 172 KYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 172 ~~~v~~i~~~p~~~~l~~~~ 191 (194)
.......+|+|||+.++...
T Consensus 349 g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCcCeeECCCCCEEEEEE
Confidence 12234578999999988764
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=3.1e-11 Score=92.30 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=125.8
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCC-Cee---EEEEecCCCeEEEecCCCeEEEEecCCCCceEEe
Q 039044 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDH-PVL---CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV 85 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~i~---~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 85 (194)
-+..+++.++.+..+.+||...... ......... ... -+-++++.-++++|+--+.|.+|+....+....+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~-----~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSV-----LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCce-----ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence 3456788888899999999876632 222222111 111 1233556668999999999999998855555568
Q ss_pred ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee--EEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCee
Q 039044 86 AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTE 163 (194)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 163 (194)
.+|.+.+..+.|+.+|++++++|+|+++++|++.+.+... -+.++.+.++.......++++++|-+.++|+.+..+..
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~ 251 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLE 251 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccceeh
Confidence 8999999999999999999999999999999999887654 34445555544443449999999999999977654432
Q ss_pred eEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 164 FKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 164 ~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.........+..++..++....+++.
T Consensus 252 --~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 252 --VYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred --hhhhhhhcceeEEEEcCCceEEEeec
Confidence 33333445678888877776666653
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.43 E-value=4.8e-12 Score=87.45 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=77.2
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEe-ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeC
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~ 118 (194)
.....+|-..++.++|+||+++|+++.+|..|++-.......+..+ .+|+.-|..++.-++ ..|+++|.|++|++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 4556689999999999999999999999999999988776666654 579999999998765 55899999999999999
Q ss_pred CCCCceeEEecC
Q 039044 119 RQPNPVHTQQLP 130 (194)
Q Consensus 119 ~~~~~~~~~~~~ 130 (194)
++++.++++..+
T Consensus 223 ~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 223 TSGKLLDTCDLS 234 (390)
T ss_pred ccCCcccccchh
Confidence 999988776543
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=7.7e-12 Score=85.23 Aligned_cols=156 Identities=12% Similarity=0.211 Sum_probs=109.7
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccc---cccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCC
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVA---SVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~ 78 (194)
|+++.++.|++.++++. |=.|.+|+++-...... ..+.....-...|++..|+|. .+.++-.+..|.|++-|++.
T Consensus 167 iNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 78999999999999876 77899999875432110 111222223456888999994 46777788899999999984
Q ss_pred CCc------eEE----------eccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC-CCCceeEEecCC----------
Q 039044 79 GGQ------PVT----------VAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR-QPNPVHTQQLPD---------- 131 (194)
Q Consensus 79 ~~~------~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~-~~~~~~~~~~~~---------- 131 (194)
... +.+ +..--..|.++.|+++|+++++-. =-+|++||+. ..+++.+.+.+.
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 321 111 111235688999999999999764 3799999994 455666555432
Q ss_pred --------eEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 132 --------RCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 132 --------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
-.++|+-++.++++|+.....++|++..+
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 24566667779999999999999996543
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=1.1e-11 Score=96.43 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=111.8
Q ss_pred cccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEecCCCC-------ceEEeccCCCcEEEEEecCCCCEEEEeeCCC
Q 039044 40 PKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPLLSGG-------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDK 111 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 111 (194)
...+..|...+..++.+++. .+|++|+.||+|++|+.++-. ...++......+.++.+.+.++.+|.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 45566788888888887755 899999999999999986421 1223444567899999999999999999999
Q ss_pred eEEEEeCCCCCcee-------E--EecCCeEEEEe---c-CC-CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeE
Q 039044 112 TLKYWDTRQPNPVH-------T--QQLPDRCYALT---V-RY-PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRC 177 (194)
Q Consensus 112 ~v~vwd~~~~~~~~-------~--~~~~~~~~~~~---~-~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~ 177 (194)
.|++.++...+..+ . .......+.+. . .+ ..++.+...+.|..||++..............+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 99999987622111 1 11112222222 1 22 3688888899999999998765555455556788999
Q ss_pred EEEecCCCeeEEEEe
Q 039044 178 VAAFPDQQGFLVCIH 192 (194)
Q Consensus 178 i~~~p~~~~l~~~~~ 192 (194)
++.+|.+.++++|..
T Consensus 1201 i~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS 1215 (1431)
T ss_pred EEecCCceEEEEecC
Confidence 999999999999853
No 257
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.3e-12 Score=86.45 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=110.3
Q ss_pred EEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC-----CceEEeccCCC
Q 039044 16 VATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-----GQPVTVAMHDA 90 (194)
Q Consensus 16 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~ 90 (194)
++.+.+..+.+-+++++. .........|.++.|...+++++.|..+|.|..+|++.+ .+...+ .|..
T Consensus 228 fs~G~sqqv~L~nvetg~-------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDS 299 (425)
T ss_pred ecccccceeEEEEeeccc-------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCc
Confidence 344456678888888874 222336677899999998999999999999999999875 233344 4889
Q ss_pred cEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCc---eeEEecCCeE-----EEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 91 PIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNP---VHTQQLPDRC-----YALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 91 ~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~-----~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
.|+++..-. ++++|++.+.+|+|++||+|..+. +...+++++. +-+.+....+++++.|...+||.++.+.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 999998877 788999999999999999998776 7777777643 3455667789999999999999999876
Q ss_pred e
Q 039044 162 T 162 (194)
Q Consensus 162 ~ 162 (194)
.
T Consensus 380 L 380 (425)
T KOG2695|consen 380 L 380 (425)
T ss_pred e
Confidence 4
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.9e-09 Score=74.16 Aligned_cols=187 Identities=10% Similarity=0.131 Sum_probs=127.5
Q ss_pred eeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccccccccCCCCC----------eeEEEEecCCCeEEEecCC-CeE
Q 039044 4 SSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASVPKASISHDHP----------VLCSTWKDDGTTVFSGGCD-KQV 71 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~d-~~i 71 (194)
.-+++++++++++++.. -|.|.++.+...... ........|.++ +....+.|++++|++.+.. -.|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l--~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL--QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcc--ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 45788999999888865 578999998764321 112222233333 7889999999999987542 369
Q ss_pred EEEecCCCCceEE---eccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCCC-CceeEEec------------CCeEE
Q 039044 72 KMWPLLSGGQPVT---VAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQP-NPVHTQQL------------PDRCY 134 (194)
Q Consensus 72 ~~~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~-~~~~~~~~------------~~~~~ 134 (194)
.+|++..++.... .-......+.|.|+|++++..... .+++|.+|..... ..+..++. ....+
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 9999997654321 112345678999999999866655 5899999998763 22222211 12478
Q ss_pred EEecCCCEEEEEcC-CCcEEEEECCCC--CeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 135 ALTVRYPLMVVGTA-DRNLVVFNLQNP--QTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 135 ~~~~~~~~l~~~~~-dg~v~~~d~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.++++|++|.++.. ...|-+|.+... +..+......+....+...|+|+|++|+++.+
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 89999999998876 346888876543 33333333334444799999999999998754
No 259
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=1.9e-10 Score=82.45 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=91.8
Q ss_pred EEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC--eEEEEecC
Q 039044 62 VFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTVR 139 (194)
Q Consensus 62 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~ 139 (194)
+++-..++.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+.+.+.+..... ..++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 3456678999999999999888887554444557899999999999999999999999999998887654 57899999
Q ss_pred CCEEEEEc-CCCcEEEEECCCCCeeeEEeeCC------CcceeeEEEEecCCCeeEEEE
Q 039044 140 YPLMVVGT-ADRNLVVFNLQNPQTEFKRINSP------LKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 140 ~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~------~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|++++++. ..+.+.++|.++.+. .+.+... ...++..+..+|.+..++++.
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 99998776 488999999998764 3333221 234567888888888777654
No 260
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.38 E-value=1.4e-10 Score=76.76 Aligned_cols=168 Identities=8% Similarity=-0.034 Sum_probs=113.8
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-CCeEEEecCCCeEEEEecCCCCceEEeccCCCc
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP 91 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 91 (194)
..||.|+.-|...+|...+.+. .......+...|+-+.=..+ .-.+..++.|.++++.+++.+..........-.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 5789999999999999987653 12222233333322221112 224566778888888887654433222211233
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeEEec----CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 92 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQQL----PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 92 v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~----~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
+.+++++++++++++.++...|..|.+..... +..... +.-+.+|+.....+|+++.||++.|||+|....+..
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 88999999999999999999999998875432 221222 234677888888999999999999999998765543
Q ss_pred Ee---eCCCcceeeEEEEecCC
Q 039044 166 RI---NSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 166 ~~---~~~~~~~v~~i~~~p~~ 184 (194)
.. ...|.+.++.+.|+|.|
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred hhcccCCCCCCceEEEEecCCC
Confidence 32 33578999999999866
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=1.2e-09 Score=77.85 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=125.1
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCC-eEEEEecCCCCceEEeccCC
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK-QVKMWPLLSGGQPVTVAMHD 89 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~ 89 (194)
+|++++..++ |...+.+...+ .....++...|.-..+.-+++-++.|..|| .+-+||.++++. ..+...-
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~-------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~l 401 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDG-------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDL 401 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCC-------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCc
Confidence 5788888884 56777765544 233446777788888888888999999999 899999887654 4455567
Q ss_pred CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE---EecCCeEEEEecCCCEEEEEcCCC----cEEEEECCCCCe
Q 039044 90 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT---QQLPDRCYALTVRYPLMVVGTADR----NLVVFNLQNPQT 162 (194)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg----~v~~~d~~~~~~ 162 (194)
+.|.++..+|+|++++.+.+...+.+.|+.+++.... -..-...+.|+|++++++-+--+| .|+++|+.+.+.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 8899999999999999999889999999998875422 223456789999999999887665 589999998764
Q ss_pred eeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 163 EFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 163 ~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
.-.+....+ =-+-+|.||+++|..
T Consensus 482 y~vTT~ta~---DfsPaFD~d~ryLYf 505 (668)
T COG4946 482 YDVTTPTAY---DFSPAFDPDGRYLYF 505 (668)
T ss_pred EEecCCccc---ccCcccCCCCcEEEE
Confidence 322222222 256678899988754
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=83.01 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=119.2
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCC
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA 90 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 90 (194)
+...++-|...|.|.+|+...++. ........|.+++.++.++.+...|.+++.|+.+..|+...+..++.+...+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~i---t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEI---TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeE---EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 345788899999999999988764 22334467999999999999999999999999999999999999999998899
Q ss_pred cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEecC-----CCEEEEEcC-CCcEEEEECCC
Q 039044 91 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTVR-----YPLMVVGTA-DRNLVVFNLQN 159 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~~-----~~~l~~~~~-dg~v~~~d~~~ 159 (194)
.+.+++.+||+..+++++ ++|++||+++++.+..+.++. ++++|.-. |.+++++.. +..+.+|-.+.
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999999886 799999999999999988754 67777665 666666543 45577776654
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2.7e-10 Score=84.91 Aligned_cols=187 Identities=11% Similarity=0.155 Sum_probs=129.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCc----------ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeE
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGT----------GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQV 71 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 71 (194)
...|++|+.+..++++|+.||.+++..+.+... ......+.+.+|...|..+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 357999999999999999999999998876432 1122345678899999999999999999999999999
Q ss_pred EEEecCCCCceEEe--ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC---------ce----------------
Q 039044 72 KMWPLLSGGQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN---------PV---------------- 124 (194)
Q Consensus 72 ~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---------~~---------------- 124 (194)
.+|-+-++.-..+. ...++.|.+|+|+.+|..++..-.||.|.+=.+.... .+
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh
Confidence 99999887654433 2345678999999999988888888776543322110 00
Q ss_pred -----eEE----------------ec-------C--CeEE--------EEecCCCEEEEEcCCCcEEEEECCCCCeeeEE
Q 039044 125 -----HTQ----------------QL-------P--DRCY--------ALTVRYPLMVVGTADRNLVVFNLQNPQTEFKR 166 (194)
Q Consensus 125 -----~~~----------------~~-------~--~~~~--------~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 166 (194)
+.. .. + ...+ -.-|+-+.++.+-.+|.+.+-.-.+...|..
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv- 254 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV- 254 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE-
Confidence 000 00 0 0011 1123556788888888777754444333322
Q ss_pred eeCCCcceeeEEEEecCCCeeEEEE
Q 039044 167 INSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 167 ~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.. .-.+..+.|+|+|..|++|.
T Consensus 255 ~dt--gm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 255 VDT--GMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred Eec--ccEeecceecCCCcEEEEcc
Confidence 222 25688999999999999874
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.7e-09 Score=77.11 Aligned_cols=182 Identities=16% Similarity=0.275 Sum_probs=119.6
Q ss_pred CeeeEEEcCCC--CEEEE-----eeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE---EecCC---
Q 039044 2 SVSSLCFSPKA--NILVA-----TSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF---SGGCD--- 68 (194)
Q Consensus 2 ~v~~~~~~p~~--~~l~~-----~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~---~~~~d--- 68 (194)
.|+.+.++|.. ..+|+ .+.-+.++||.+.............+ ....=..+.|++-|.-|+ +..-|
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCC
Confidence 46778888863 34443 34556899999874332111111111 122334688888776322 22222
Q ss_pred ------CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEe--eCCCeEEEEeCCCCCceeEE-ecCCeEEEEecC
Q 039044 69 ------KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG--SWDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVR 139 (194)
Q Consensus 69 ------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~~~~ 139 (194)
..+++++++.......+. ..++|.++.|+|+++-++++ -.-..+.++|++ +.++..+ +++-+++-|+|.
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPH 322 (566)
T ss_pred ccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCC
Confidence 357888877333433433 57899999999999877665 346789999998 5566555 456679999999
Q ss_pred CCEEEEEcC---CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 140 YPLMVVGTA---DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 140 ~~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|++++.++- .|.+-|||..+.+. ..... -...+-..|+|||++++++.
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~---a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKL-IAKFK---AANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhh-ccccc---cCCceEEEEcCCCcEEEEEe
Confidence 999887664 58899999998543 22222 22346789999999999875
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.8e-11 Score=88.65 Aligned_cols=156 Identities=16% Similarity=0.262 Sum_probs=115.6
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCc--ccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGT--GVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
..++--.+.+-++++++|.+|++|.+..... ...........|+.+|.++.|-.+.++++++ ||.|.+||.--+..
T Consensus 739 Rai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~ 816 (1034)
T KOG4190|consen 739 RAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRL 816 (1034)
T ss_pred HHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccch
Confidence 3344444667899999999999999875432 2223456677899999999999988887765 78899999877766
Q ss_pred eEEe--ccCCCcEEEEEecCC--CCEEEE-eeCCCeEEEEeCCCCCceeEEecC--------CeEEEEecCCCEEEEEcC
Q 039044 82 PVTV--AMHDAPIKEVAWIPE--MNLLAT-GSWDKTLKYWDTRQPNPVHTQQLP--------DRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 82 ~~~~--~~~~~~v~~~~~~~~--~~~l~~-~~~d~~v~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ 148 (194)
+... ....+.+..+..-++ ...++. ++...+|+++|.|..+...+.+.. .+++++.+.|++++.+-.
T Consensus 817 Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS 896 (1034)
T KOG4190|consen 817 LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS 896 (1034)
T ss_pred hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc
Confidence 5422 222344445555443 344443 478899999999998877665432 368999999999999999
Q ss_pred CCcEEEEECCCCC
Q 039044 149 DRNLVVFNLQNPQ 161 (194)
Q Consensus 149 dg~v~~~d~~~~~ 161 (194)
+|.|.+.|.|++.
T Consensus 897 nGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 897 NGCIAILDARNGK 909 (1034)
T ss_pred CCcEEEEecCCCc
Confidence 9999999999876
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2e-10 Score=82.79 Aligned_cols=113 Identities=12% Similarity=0.263 Sum_probs=88.3
Q ss_pred CCeeeEEEcCCCCEEEEee--CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC---CeEEEEe
Q 039044 1 DSVSSLCFSPKANILVATS--WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD---KQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d 75 (194)
++|+++.|+|+++.+++.. .-.++.+||++... ...-..++-+++-|+|.|++++.++.+ |.+.+||
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 6899999999998877654 35679999987652 222345677899999999999887654 7899999
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC------CCeEEEEeCCCCCce
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW------DKTLKYWDTRQPNPV 124 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~vwd~~~~~~~ 124 (194)
+.+.+.+..+..-.. +-+.|+|||++|+|+.. |+.++||+.. |..+
T Consensus 343 v~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 343 VPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred ccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 999888877765443 45799999999999875 6889999975 4443
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.5e-11 Score=82.81 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=101.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.|.++.|...++++..|.++|.|..+|++........ .....-|...|+++..-. ++++|.+.+.+|+|++||++..+
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~-~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW-CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc-ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence 4677888888899999999999999999876432222 334456888999998877 78899999999999999998766
Q ss_pred c---eEEeccCCCcEE--EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC
Q 039044 81 Q---PVTVAMHDAPIK--EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD 131 (194)
Q Consensus 81 ~---~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 131 (194)
+ +..+.+|-..-. -+...++...++++++|...++|.++.+..+.+++.+.
T Consensus 333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 6 777777754322 23345566788889999999999999999888876653
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.24 E-value=3.1e-09 Score=84.17 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=126.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEE----ecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCW----EISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
.|.++.+-++...++.+..+|.|.+. +..... ......-...|.+++|+||+..|+..+.++++.+..-.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~------~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDE------IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce------eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 57889999999999999999999999 333332 23334457789999999999999999888888776421
Q ss_pred ---------------C--------CCceEE-------------------------eccCCCcEEEEEecCCCCEEEEeeC
Q 039044 78 ---------------S--------GGQPVT-------------------------VAMHDAPIKEVAWIPEMNLLATGSW 109 (194)
Q Consensus 78 ---------------~--------~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~ 109 (194)
. |+.... +. +...-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 0 000000 11 2234467899999999998875
Q ss_pred ------CCeEEEEeCCCCCceeEEe---cCCeEEEEecCCCEEEEEcC---CCcEEEEECCCCCee-eEEeeCCCcceee
Q 039044 110 ------DKTLKYWDTRQPNPVHTQQ---LPDRCYALTVRYPLMVVGTA---DRNLVVFNLQNPQTE-FKRINSPLKYQTR 176 (194)
Q Consensus 110 ------d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~---dg~v~~~d~~~~~~~-~~~~~~~~~~~v~ 176 (194)
-+.++||+-+ ++.....+ +-...++|-|.|+.|++... ...|.+|..+..+.- +.....+....|.
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 2579999965 54333222 22357899999999988765 345888886654422 2212224567899
Q ss_pred EEEEecCCCeeEEEE
Q 039044 177 CVAAFPDQQGFLVCI 191 (194)
Q Consensus 177 ~i~~~p~~~~l~~~~ 191 (194)
.+.|++|+..|++-.
T Consensus 309 ~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 309 ELAWNSDSEILAVWL 323 (928)
T ss_pred EEEECCCCCEEEEEe
Confidence 999999999999865
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=5.9e-09 Score=83.94 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=107.0
Q ss_pred eeEEEcC-CCCEEEEeeCCCeEEEEecccCCccccc---cccccc------CCCCCeeEEEEecCCCeE-EEecCCCeEE
Q 039044 4 SSLCFSP-KANILVATSWDNQVRCWEISRGGTGVAS---VPKASI------SHDHPVLCSTWKDDGTTV-FSGGCDKQVK 72 (194)
Q Consensus 4 ~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~------~~~~~i~~~~~~~~~~~l-~~~~~d~~i~ 72 (194)
..++++| ++.++++.+.++.|++||...+...... ...... ..-.....++++|+++.| ++-..++.|+
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 4689999 5666677777889999998665321000 000000 111345679999999854 4556678999
Q ss_pred EEecCCCCceEEe-------------cc--------CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe---
Q 039044 73 MWPLLSGGQPVTV-------------AM--------HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ--- 128 (194)
Q Consensus 73 ~~d~~~~~~~~~~-------------~~--------~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--- 128 (194)
+||+.++...... .. .-.....++++++|+.+++-..++.|++||..++.......
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 9998876432110 00 01134688999999988888889999999998765432211
Q ss_pred -------------cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 129 -------------LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 129 -------------~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
.....++++++|+.+++-+.++.|++||+++.+
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 123578999999988888889999999998765
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=2.2e-09 Score=76.62 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=107.3
Q ss_pred eeEEEcCCCCEEEEeeCCC-eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 4 SSLCFSPKANILVATSWDN-QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
.=..+..+++.++.|..|| .+-+||.++++ .......-+.|.+++.+|+|++++.+.....+-+.|+.+++..
T Consensus 363 rY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 363 RYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 3344555666889999999 89999998875 3445566678999999999999999999999999999999876
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCC----eEEEEeCCCCCceeEE--ecCCeEEEEecCCCEEEEEc
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDK----TLKYWDTRQPNPVHTQ--QLPDRCYALTVRYPLMVVGT 147 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 147 (194)
..-+...+-|+.++|+|+++++|-+--+| .|+++|+..++..... ....-+.+|.|++++|..-+
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 65555677899999999999999876654 7999999987754332 23344667888888765543
No 271
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.22 E-value=5.9e-11 Score=56.86 Aligned_cols=38 Identities=39% Similarity=0.680 Sum_probs=35.7
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEe
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd 117 (194)
+++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46678899999999999999999999999999999997
No 272
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=8.3e-10 Score=82.93 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=107.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.++|++++ +++|+-|+.+|.+++++..... .....|... ..+|.++++++.||+|.|-.+-+.+.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-------ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 35566664 5789999999999999976541 222233332 56899999999999999999988877
Q ss_pred eEEeccCCCcEEEEEecCC-----CCEEEEeeCCCeEEEEeCCC---CCceeEEecCCeEEEEecCCCEEEEEcCCCcEE
Q 039044 82 PVTVAMHDAPIKEVAWIPE-----MNLLATGSWDKTLKYWDTRQ---PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLV 153 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~ 153 (194)
...+. ...++.+++++|+ .+.+++||..| +.++.-+- ...+..........++++.|++++-++.+| |+
T Consensus 106 ~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 106 ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VK 182 (846)
T ss_pred ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cE
Confidence 76665 4578999999996 56789999888 77775432 223333344556677888999999999988 99
Q ss_pred EEECCCCCe
Q 039044 154 VFNLQNPQT 162 (194)
Q Consensus 154 ~~d~~~~~~ 162 (194)
+||+...+.
T Consensus 183 vyd~~~~~~ 191 (846)
T KOG2066|consen 183 VYDTPTRQR 191 (846)
T ss_pred EEeccccce
Confidence 999987653
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=3.2e-10 Score=76.77 Aligned_cols=188 Identities=12% Similarity=0.145 Sum_probs=122.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCC------------CCeeEEEEecCC--CeEEEec
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHD------------HPVLCSTWKDDG--TTVFSGG 66 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~--~~l~~~~ 66 (194)
+.|+++.|...|.++++|.+.|.|.+|.-+....-.......+++|. ..|..+.|..++ ..++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 35889999999999999999999999975543210011112233333 457888887654 3566677
Q ss_pred CCCeEEEEecCCCC-------------------c-----------------------eEEe-ccCCCcEEEEEecCCCCE
Q 039044 67 CDKQVKMWPLLSGG-------------------Q-----------------------PVTV-AMHDAPIKEVAWIPEMNL 103 (194)
Q Consensus 67 ~d~~i~~~d~~~~~-------------------~-----------------------~~~~-~~~~~~v~~~~~~~~~~~ 103 (194)
.|.+|++|.+.... + .+.+ ..|...++++.|+.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 89999999875320 0 0011 346777889999988887
Q ss_pred EEEeeCCCeEEEEeCCCCCceeE---Eec--------CCeEEEEecCC-CEEEEEcCCCcEEEEECCCCCee------eE
Q 039044 104 LATGSWDKTLKYWDTRQPNPVHT---QQL--------PDRCYALTVRY-PLMVVGTADRNLVVFNLQNPQTE------FK 165 (194)
Q Consensus 104 l~~~~~d~~v~vwd~~~~~~~~~---~~~--------~~~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~------~~ 165 (194)
++++ +|-.|.+|++.-...... ++. -.++..|+|.. ..+.-.+..|.|++-|+|..... +.
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 7765 478999999875432211 111 12456777754 45666778999999999943211 11
Q ss_pred Eee--------CCCcceeeEEEEecCCCeeEE
Q 039044 166 RIN--------SPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 166 ~~~--------~~~~~~v~~i~~~p~~~~l~~ 189 (194)
... ......|..+.|+|+|+++++
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 111 112345788999999999876
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=5.4e-08 Score=68.93 Aligned_cols=181 Identities=10% Similarity=0.006 Sum_probs=111.5
Q ss_pred EEcCCCCEEEEeeC----------CCeEEEEecccCCcccccccc-c-ccCCCCCeeEEEEecCCCeEEEec-C-CCeEE
Q 039044 7 CFSPKANILVATSW----------DNQVRCWEISRGGTGVASVPK-A-SISHDHPVLCSTWKDDGTTVFSGG-C-DKQVK 72 (194)
Q Consensus 7 ~~~p~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~l~~~~-~-d~~i~ 72 (194)
.++||++.|+++.. +..|.+||..+.+........ . ..........++++|||++++... . +..|.
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 38999988877655 678999999887531100000 0 000122344788999999998776 3 68899
Q ss_pred EEecCCCCceEEecc----------------C---------------CCcEEEE--------------EecC-CCCEEEE
Q 039044 73 MWPLLSGGQPVTVAM----------------H---------------DAPIKEV--------------AWIP-EMNLLAT 106 (194)
Q Consensus 73 ~~d~~~~~~~~~~~~----------------~---------------~~~v~~~--------------~~~~-~~~~l~~ 106 (194)
+.|+.+++.+.++.. | +...... .|.+ +|+++..
T Consensus 132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 999987655433211 0 0001111 1233 6666665
Q ss_pred eeCCCeEEEEeCCCCC-----ceeEEecC----------CeEEEEecCCCEEEEEcC----------CCcEEEEECCCCC
Q 039044 107 GSWDKTLKYWDTRQPN-----PVHTQQLP----------DRCYALTVRYPLMVVGTA----------DRNLVVFNLQNPQ 161 (194)
Q Consensus 107 ~~~d~~v~vwd~~~~~-----~~~~~~~~----------~~~~~~~~~~~~l~~~~~----------dg~v~~~d~~~~~ 161 (194)
... |+|.+.|+...+ ....+... ...++++++++.++.... .+.|.++|..+.+
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 554 999999965433 22222111 134899999998887431 2469999998876
Q ss_pred eeeEEeeCCCcceeeEEEEecCCC-eeEEEE
Q 039044 162 TEFKRINSPLKYQTRCVAAFPDQQ-GFLVCI 191 (194)
Q Consensus 162 ~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~~ 191 (194)
.. ..+. ....+..++++||++ .|.+..
T Consensus 291 vi-~~i~--vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 291 RL-RKIE--LGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred EE-EEEe--CCCceeeEEECCCCCeEEEEeC
Confidence 43 3333 245789999999999 665543
No 275
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=2.4e-09 Score=73.28 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=115.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec-----
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL----- 76 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~----- 76 (194)
+++++.+.++.+.|+.|-..|++.-+.+...-.. ...+.....|..++..+-|+...+++++.+.|..+.---.
T Consensus 70 ~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 70 PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred CceEeeeeccceEEEEEEecceEEEEEhhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 5788999999999999999999998887654221 1234455678888888888777777777666654332111
Q ss_pred ------------------------------------CCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 77 ------------------------------------LSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 77 ------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
..-..+.++.+|...+.+++|.|....|+++..|..+.+||+..
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccC
Confidence 11134556778999999999999999999999999999999975
Q ss_pred CCc-eeEEec---CCeEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 121 PNP-VHTQQL---PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 121 ~~~-~~~~~~---~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
.+- ..+... .++.+...+.-+.++++++||.|.+||++...
T Consensus 229 ~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 229 RKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 442 222222 33455556667889999999999999998643
No 276
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=81.71 Aligned_cols=186 Identities=9% Similarity=0.104 Sum_probs=127.5
Q ss_pred CCeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCC---CeeEEEEecCC-CeEEEecCCCeEEEEe
Q 039044 1 DSVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDH---PVLCSTWKDDG-TTVFSGGCDKQVKMWP 75 (194)
Q Consensus 1 ~~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~~l~~~~~d~~i~~~d 75 (194)
++|+-++.-|+. ..|.+++.|+.+.-+|+......... .....+.. ....++.+|.. ..+++|+.|..+++||
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCcccee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 467788888864 67899999999999998876532111 11222222 57888999955 4899999999999999
Q ss_pred cCCCCc------eEEec------cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC------------ceeE-EecC
Q 039044 76 LLSGGQ------PVTVA------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN------------PVHT-QQLP 130 (194)
Q Consensus 76 ~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~------------~~~~-~~~~ 130 (194)
.+.-.. +..+. ...-.|++++|+.++.-|+++-.|-.|+++.-..+. .++. ++++
T Consensus 311 ~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH 390 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH 390 (559)
T ss_pred ccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccc
Confidence 764221 12222 223568999999887777777778999999543221 1111 2222
Q ss_pred C-----e-EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 131 D-----R-CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 131 ~-----~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
. + .-.|.|..+++++|+..|.|.||+-.+.+.. ..+ .+-..-|+|+.-+|--..|+++
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii-~~M-egDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII-RFM-EGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecchhHHH-HHh-hcccceEeccCCCCCCchhhcc
Confidence 1 2 2356788899999999999999999887642 223 2334488999999988777764
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=5.1e-09 Score=71.76 Aligned_cols=186 Identities=15% Similarity=0.196 Sum_probs=137.1
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC----
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL---- 77 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~---- 77 (194)
.|++...-|..+-+++.+.|.++++|--.+... .-+........+++++.+.++...|+.|-.+|.+.-+.+.
T Consensus 26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn 102 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---YWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN 102 (404)
T ss_pred hhhhheeccCCCCeEEccccceeeeEEeccccc---cCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh
Confidence 345556667677899999999999997555433 2234444567789999999999999999999999988653
Q ss_pred CCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCCCcEEEE
Q 039044 78 SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 78 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
+...++.+..|...+..+-|+....++++.+.|..+.---.+.+..+..... ....+.+... +.+.|...|.|..-
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITML 180 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEE
Confidence 3345566778999999999999889999999998877555566655543322 2223333222 77778888888777
Q ss_pred ECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 156 NLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 156 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+............+|.+.+.+++|.|..+.|.+|+.
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 6665554455556779999999999999999988864
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=8.9e-08 Score=77.39 Aligned_cols=186 Identities=8% Similarity=0.017 Sum_probs=116.3
Q ss_pred eeeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccc---c-ccccC-------CCCCeeEEEEec-CCCeEEEecCCC
Q 039044 3 VSSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASV---P-KASIS-------HDHPVLCSTWKD-DGTTVFSGGCDK 69 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~---~-~~~~~-------~~~~i~~~~~~~-~~~~l~~~~~d~ 69 (194)
...++++++++.|+++.. +..|+.+|..++......- . ....+ .-.....++++| ++..+++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 357889988876666544 5678888876542100000 0 00000 012345899999 556667777889
Q ss_pred eEEEEecCCCCceEEecc---------------CCCcEEEEEecCCCCE-EEEeeCCCeEEEEeCCCCCceeEE------
Q 039044 70 QVKMWPLLSGGQPVTVAM---------------HDAPIKEVAWIPEMNL-LATGSWDKTLKYWDTRQPNPVHTQ------ 127 (194)
Q Consensus 70 ~i~~~d~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~-l~~~~~d~~v~vwd~~~~~~~~~~------ 127 (194)
.|++||..++... .+.+ .-.....++++|++++ +++-+.++.|++||+.++......
T Consensus 706 ~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 706 QIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred eEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999998765432 1111 1134567999999885 445556789999999865422110
Q ss_pred ------------------ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCC------------CcceeeE
Q 039044 128 ------------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSP------------LKYQTRC 177 (194)
Q Consensus 128 ------------------~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~------------~~~~v~~ 177 (194)
......++++++|+.+++-..++.|++||..+.... .....+ .-.....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceE
Confidence 012247888999998888888999999999875432 111100 1124678
Q ss_pred EEEecCCCeeEEE
Q 039044 178 VAAFPDQQGFLVC 190 (194)
Q Consensus 178 i~~~p~~~~l~~~ 190 (194)
++++|+|+.+++-
T Consensus 864 Iavd~dG~lyVaD 876 (1057)
T PLN02919 864 LALGENGRLFVAD 876 (1057)
T ss_pred EEEeCCCCEEEEE
Confidence 9999999876654
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.14 E-value=2.9e-08 Score=78.91 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=115.0
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccC-------------C------------c------ccc--------ccc-
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRG-------------G------------T------GVA--------SVP- 40 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~-------------~------------~------~~~--------~~~- 40 (194)
+.|.+++|+||++.|+..+.++++.+..-.-. . . ... ..+
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~ 200 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPK 200 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCc
Confidence 36899999999999999999999887754200 0 0 000 000
Q ss_pred ---ccccCCCCCeeEEEEecCCCeEEEecC---C---CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC--
Q 039044 41 ---KASISHDHPVLCSTWKDDGTTVFSGGC---D---KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-- 109 (194)
Q Consensus 41 ---~~~~~~~~~i~~~~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 109 (194)
.... ....-..++|..||+++++.+- . ..++||+-+ |.....-..-.+--.+++|-|+|+++++.-.
T Consensus 201 ~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 201 VDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred cccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence 0011 3345678899999999998764 2 479999954 5433332322333457899999999998764
Q ss_pred -CCeEEEEeCCCCCceeEEec-------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEe-eCCCcceeeEEEE
Q 039044 110 -DKTLKYWDTRQPNPVHTQQL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRI-NSPLKYQTRCVAA 180 (194)
Q Consensus 110 -d~~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~~~v~~i~~ 180 (194)
...|.+|.- +|..-.++.. ....+.|++++..|+....|. |.+|-..+..-..+.. .......+..+.|
T Consensus 279 ~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W 356 (928)
T PF04762_consen 279 DRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW 356 (928)
T ss_pred CCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence 345666663 3433333322 346789999999999977666 9999988765322222 1222334556889
Q ss_pred ecCC
Q 039044 181 FPDQ 184 (194)
Q Consensus 181 ~p~~ 184 (194)
+|..
T Consensus 357 dpe~ 360 (928)
T PF04762_consen 357 DPEK 360 (928)
T ss_pred CCCC
Confidence 9854
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.14 E-value=6.9e-08 Score=64.79 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=103.8
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccc-cccCCCCCeeEEEEecCC------CeEEEecCCCeEEEEec
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPK-ASISHDHPVLCSTWKDDG------TTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~------~~l~~~~~d~~i~~~d~ 76 (194)
.-++|+||+.+||.+...|+|++||+............ ....-...|..|.|.+.. ..|+.-..+|.++-|-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 35899999999999999999999999764321111111 111234567777775521 24566667888887775
Q ss_pred CCC-----CceEE--ec-cCCCcEEEEEecCCCCEEEEeeCCC-----------eEEEEeCCCCCcee------------
Q 039044 77 LSG-----GQPVT--VA-MHDAPIKEVAWIPEMNLLATGSWDK-----------TLKYWDTRQPNPVH------------ 125 (194)
Q Consensus 77 ~~~-----~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d~-----------~v~vwd~~~~~~~~------------ 125 (194)
..+ +.... +. .+...|.++.++|..++|+.+|... -+.-|.+-++.+-.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~ 206 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITA 206 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccc
Confidence 322 12222 22 3477899999999988888876421 25556543322110
Q ss_pred -----------E---E------ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCe
Q 039044 126 -----------T---Q------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQT 162 (194)
Q Consensus 126 -----------~---~------~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~ 162 (194)
. + +...-.+.++|+++.|++...+|.|.+|++.+...
T Consensus 207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 0 0 01123688999999999999999999999988654
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.14 E-value=3.9e-10 Score=74.37 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=78.8
Q ss_pred CeeEEEEec-CCCeEEEecCCCeEEEEecCCCCce-EEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCC---
Q 039044 49 PVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPN--- 122 (194)
Q Consensus 49 ~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~--- 122 (194)
.+.+++-+| +.+.+++|+.||.+.+||.+....+ ..+..|+.+++.+.|+| ++..|++++.||.+..||..+.-
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i 260 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSI 260 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEe
Confidence 388999999 4567788999999999999987543 35688999999999999 67889999999999999976321
Q ss_pred --------------ceeE-Eec----CC---eEEEEecCCCEEEEEcCCCcEEEEE
Q 039044 123 --------------PVHT-QQL----PD---RCYALTVRYPLMVVGTADRNLVVFN 156 (194)
Q Consensus 123 --------------~~~~-~~~----~~---~~~~~~~~~~~l~~~~~dg~v~~~d 156 (194)
+++. ++. +. ..-.|.-.|..+++|+.-+.|++++
T Consensus 261 ~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1111 110 11 1224445677788888777777764
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=3.7e-08 Score=65.62 Aligned_cols=169 Identities=12% Similarity=-0.034 Sum_probs=112.4
Q ss_pred EEEEeeCCCeEEEEecccCCcccccccccccCCC--CCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc-eEE--eccC
Q 039044 14 ILVATSWDNQVRCWEISRGGTGVASVPKASISHD--HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ-PVT--VAMH 88 (194)
Q Consensus 14 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~--~~~~ 88 (194)
.+..++.|.++++++++.+.. ....|. -...++.++++++++++.+....|..|.+..... +.. ....
T Consensus 130 ~~~i~sndht~k~~~~~~~s~-------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSN-------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred ceeeccCCcceeEEEEecCcc-------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 355667788888888776532 111222 2378899999999999999999999998875432 222 2334
Q ss_pred CCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeE--------EecCCeEEEEecCCC--EEEEEcCCCcEEEEECC
Q 039044 89 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHT--------QQLPDRCYALTVRYP--LMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~--~l~~~~~dg~v~~~d~~ 158 (194)
...-.+..|+.....+|++..||++.|||+|....... +.+..+.+.|++.|. .|+..-.-+.+++.|+|
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 45556788999889999999999999999997543221 233457888888664 45555556779999999
Q ss_pred CCCeeeEEeeCC-----Cc-ceeeEEEEecCCCeeEE
Q 039044 159 NPQTEFKRINSP-----LK-YQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 159 ~~~~~~~~~~~~-----~~-~~v~~i~~~p~~~~l~~ 189 (194)
+..........+ |. ..+..-.|+.++....+
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCccccc
Confidence 986433222211 11 22555566665554433
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.11 E-value=4.4e-09 Score=80.31 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=123.6
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCc
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP 91 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 91 (194)
+..++-|+....+..+|+++... .....-....+.-|. .+++.+++|...|+|.+-|.++.+.+.++.+|.+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e-----~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKE-----TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeeccccee-----eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccc
Confidence 34566676677777888877632 111111222344444 46789999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEeeC---------CCeEEEEeCCCCCceeEEecCC--eEEEEecCC-CEEEEEcCCCcEEEEECCC
Q 039044 92 IKEVAWIPEMNLLATGSW---------DKTLKYWDTRQPNPVHTQQLPD--RCYALTVRY-PLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 92 v~~~~~~~~~~~l~~~~~---------d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~-~~l~~~~~dg~v~~~d~~~ 159 (194)
|.++.. .|+.|+++|. |.-|+|||+|+.+.+..+..+. .-+.|.|.- ..+++++..|...+-|..+
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence 987765 7889999986 4568999999988766554432 456777754 5688889999999999433
Q ss_pred CCee--eEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 160 PQTE--FKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 160 ~~~~--~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
...+ -..+..+....+....++++++.++.|-+
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence 3222 12233445566899999999999998743
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1e-07 Score=69.80 Aligned_cols=137 Identities=10% Similarity=0.058 Sum_probs=90.2
Q ss_pred CeeEEEEecCCCe-EEEecC---CCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee-C--CCeEEEEeCCCC
Q 039044 49 PVLCSTWKDDGTT-VFSGGC---DKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-W--DKTLKYWDTRQP 121 (194)
Q Consensus 49 ~i~~~~~~~~~~~-l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--d~~v~vwd~~~~ 121 (194)
......|+|||+. ++..+. +..|.++|+.+++..... ...+......|+|||+.++... . +..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 553332 356999999877654433 3455566788999998766543 2 357888898776
Q ss_pred CceeEEecC--CeEEEEecCCCEEEEEcC-CC--cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 122 NPVHTQQLP--DRCYALTVRYPLMVVGTA-DR--NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~-dg--~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.......+ .....|+|+|+.|+..+. .+ .|++.|+.+++.. .+..... ....|+|||+.++...
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rlt~~g~---~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--QVVFHGK---NNSSVSTYKNYIVYSS 337 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--eCccCCC---cCceECCCCCEEEEEE
Confidence 643322222 345689999998777664 33 5888888876532 2221111 1248999999998765
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=8.4e-07 Score=60.63 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=110.9
Q ss_pred eeeEEEc-CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC--------CeEEE
Q 039044 3 VSSLCFS-PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD--------KQVKM 73 (194)
Q Consensus 3 v~~~~~~-p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~ 73 (194)
...+++. +++ .|+.+..++ +.++|..++..................+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 3456777 554 455555544 555687765321111110011145678899999999977776543 55777
Q ss_pred EecCCCCceEEeccCCCcEEEEEecCCCCEEE-EeeCCCeEEEEeCCCCCc-e------eEEecC---CeEEEEecCCCE
Q 039044 74 WPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLA-TGSWDKTLKYWDTRQPNP-V------HTQQLP---DRCYALTVRYPL 142 (194)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~vwd~~~~~~-~------~~~~~~---~~~~~~~~~~~~ 142 (194)
++.. ++. ......-...+.++|+|+++.|+ +-+..+.|..+++..... + ...... ...+++..+|+.
T Consensus 120 ~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 120 IDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp EETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred ECCC-CeE-EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 7765 333 33333345678999999998765 556778899999864332 2 111221 246889999988
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEe-cCCCeeEEEE
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAF-PDQQGFLVCI 191 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~l~~~~ 191 (194)
.++....+.|.++|.+ ++. ...+..+. ..+++++|. |+.+.|.+.+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~-~~~i~~p~-~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKL-LREIELPV-PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETTTEEEEEETT-SCE-EEEEE-SS-SSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccE-EEEEcCCC-CCEEEEEEECCCCCEEEEEe
Confidence 8887788999999988 543 33344442 378999994 6766666654
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=5.5e-10 Score=81.20 Aligned_cols=148 Identities=18% Similarity=0.303 Sum_probs=106.3
Q ss_pred cccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC-------CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEE
Q 039044 42 ASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG-------GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLK 114 (194)
Q Consensus 42 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 114 (194)
.+.+|...|..+.--.+.+-+++++.|.+|++|.++.. .+..+++.|+.+|.++.|-.+-++++++ |+.|+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 44577778888777677788999999999999998642 2455778999999999999988888765 89999
Q ss_pred EEeCCCCCceeEEec-----CCe-EEEEec-CCCEEEEE-cCCCcEEEEECCCCCe--eeEEeeC-CCcceeeEEEEecC
Q 039044 115 YWDTRQPNPVHTQQL-----PDR-CYALTV-RYPLMVVG-TADRNLVVFNLQNPQT--EFKRINS-PLKYQTRCVAAFPD 183 (194)
Q Consensus 115 vwd~~~~~~~~~~~~-----~~~-~~~~~~-~~~~l~~~-~~dg~v~~~d~~~~~~--~~~~~~~-~~~~~v~~i~~~p~ 183 (194)
+||.--++++..+.. ... ..++-. +...++.| +...+|+++|.|..+- +.+.-.. .....+++++..|.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 999877776643321 112 223222 34444444 6789999999998652 2232222 23466899999999
Q ss_pred CCeeEEEE
Q 039044 184 QQGFLVCI 191 (194)
Q Consensus 184 ~~~l~~~~ 191 (194)
|..++++.
T Consensus 888 GN~lAa~L 895 (1034)
T KOG4190|consen 888 GNKLAAAL 895 (1034)
T ss_pred cchhhHHh
Confidence 99988764
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=7.6e-09 Score=70.27 Aligned_cols=188 Identities=15% Similarity=0.195 Sum_probs=124.0
Q ss_pred CeeeEEEcCCC--CEEEEeeCCCeEEEEecccCCcc------------------ccc------------------ccc--
Q 039044 2 SVSSLCFSPKA--NILVATSWDNQVRCWEISRGGTG------------------VAS------------------VPK-- 41 (194)
Q Consensus 2 ~v~~~~~~p~~--~~l~~~~~d~~i~i~~~~~~~~~------------------~~~------------------~~~-- 41 (194)
.|..+.|..++ ..++..+.|.+|++|.+...... ... .+.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 46778887643 45666678999999998654100 000 000
Q ss_pred cccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc---eEEeccCC-----CcEEEEEecCC-CCEEEEeeCCCe
Q 039044 42 ASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHD-----APIKEVAWIPE-MNLLATGSWDKT 112 (194)
Q Consensus 42 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~~ 112 (194)
....|.--+.++.++.|.+.++++ .|=.|.+|++.-... +..+++|. .-|++..|+|. ...+..++..|.
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 113455668899999988888776 577899999875433 23344553 35788999994 456777788999
Q ss_pred EEEEeCCCCCc------eeEE-------------ecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCC--
Q 039044 113 LKYWDTRQPNP------VHTQ-------------QLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPL-- 171 (194)
Q Consensus 113 v~vwd~~~~~~------~~~~-------------~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-- 171 (194)
|++-|+|+... +... ......+.|+++|+++++-.. -+|.+||.+..+.+.+......
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence 99999995431 1111 113357889999999988764 4699999998777766553210
Q ss_pred ---------cce---eeEEEEecCCCeeEEEE
Q 039044 172 ---------KYQ---TRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 172 ---------~~~---v~~i~~~p~~~~l~~~~ 191 (194)
... --.+.|+.|.+.+++|+
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 011 23567888888877775
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.01 E-value=1.5e-07 Score=67.89 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=119.8
Q ss_pred CeeeEEEcCCC--CEEEE-----eeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec--------
Q 039044 2 SVSSLCFSPKA--NILVA-----TSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-------- 66 (194)
Q Consensus 2 ~v~~~~~~p~~--~~l~~-----~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------- 66 (194)
.|....|+|.+ ..|+. ...++.+++|.+..+.. .....-....=..+.|.+.|++++.--
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~-----l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV-----LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe-----eeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 46778888863 34443 45678899999885432 111111122335688999888766321
Q ss_pred ---CCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee--CCCeEEEEeCCCCCceeEE-ecCCeEEEEecCC
Q 039044 67 ---CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS--WDKTLKYWDTRQPNPVHTQ-QLPDRCYALTVRY 140 (194)
Q Consensus 67 ---~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~ 140 (194)
....+++++++........ ...++|.+.+|.|.++.+++.+ .+..+.++|++.. ....+ +...+.+.|+|.+
T Consensus 250 syfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~ 327 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHE 327 (561)
T ss_pred ceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcc
Confidence 1245788888754444333 5688999999999888777655 5788999999865 33333 3345678999999
Q ss_pred CEEEEEcC---CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 141 PLMVVGTA---DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 141 ~~l~~~~~---dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++++.++- .|.+-+||............ ....+-+.|+||++++.+..
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~---~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFN---GLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEee---cCCceEeeccCCceEEEecC
Confidence 99988665 57799999876543332232 22346678999999887653
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=5.5e-09 Score=78.34 Aligned_cols=183 Identities=13% Similarity=0.261 Sum_probs=127.5
Q ss_pred eeeEEEcCCC--CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCC-CeEEEecCCCeEEEEecCCC
Q 039044 3 VSSLCFSPKA--NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 3 v~~~~~~p~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~ 79 (194)
|....|+|.. .+-++......-.+|++...... .....+.+|...++.+.|+|.. ..+++++-|..+..||+++.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~--aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN--AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCcc--ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 4567787753 44455455556678998765431 3345667899999999999955 47889999999999999987
Q ss_pred Cc-eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEEecCCeEE---EEec-CCCEEEEEcCCCcEE
Q 039044 80 GQ-PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQLPDRCY---ALTV-RYPLMVVGTADRNLV 153 (194)
Q Consensus 80 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~~~~~~---~~~~-~~~~l~~~~~dg~v~ 153 (194)
.. +..+..-......++|+.....+++.+..+.|.+||.+.+. ++...+.+...+ .|.. ....+.+++.||+|+
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 64 33444445667889999855556666778899999999764 667777755433 2221 234688999999999
Q ss_pred EEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 154 VFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 154 ~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
+||..+...+.+.. ...+.++..-.+-|-|+...
T Consensus 228 fw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eeccccccccccee-ccccCcceeccccccCceeE
Confidence 99998765544433 23456677777777665543
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=1.4e-09 Score=51.95 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=33.5
Q ss_pred cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 40 PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 40 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
...+.+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 456778999999999999999999999999999997
No 291
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=7.4e-07 Score=63.30 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=76.2
Q ss_pred CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC----------CCeEEEEecCCCCceEEeccCC--
Q 039044 22 NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC----------DKQVKMWPLLSGGQPVTVAMHD-- 89 (194)
Q Consensus 22 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~-- 89 (194)
++|.+.|..+.+. ......-..+ ..+ ++||++.|+.+.. +..|.+||..+.+.+.++.-..
T Consensus 27 ~~v~ViD~~~~~v-----~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRV-----LGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEE-----EEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 7899999887642 2222221222 234 9999998887654 7899999999999888775321
Q ss_pred -----CcEEEEEecCCCCEEEEee-C-CCeEEEEeCCCCCceeEEecCC
Q 039044 90 -----APIKEVAWIPEMNLLATGS-W-DKTLKYWDTRQPNPVHTQQLPD 131 (194)
Q Consensus 90 -----~~v~~~~~~~~~~~l~~~~-~-d~~v~vwd~~~~~~~~~~~~~~ 131 (194)
.....++++|+|++|++.. . +..|.+.|+.+++.+.++..+.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 2234789999999988776 3 7899999999999999888765
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=6e-08 Score=70.62 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=102.2
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC-----------CCeEEE
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-----------DKTLKY 115 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~v~v 115 (194)
+-.-+-+.|+|.|.+|+|--..| |.+|--.+-..++.+. |+ .|.-+.|+|+.+||++=+. ...+.|
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred cceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 33457799999999999986665 8999876666666665 43 5888999999999998653 157999
Q ss_pred EeCCCCCceeEEecCC------eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 116 WDTRQPNPVHTQQLPD------RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 116 wd~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
||+++|.....+.... ..+.||.+++++|.-..++ |.||+..+.... ....-.-..|+...|+|.+..||.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~ll--d~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLL--DKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeee--cccccCCccccCcccCCCcceEEE
Confidence 9999999887776521 4678999999999877754 999998764321 111112345888899999888764
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=2.7e-06 Score=58.14 Aligned_cols=175 Identities=11% Similarity=0.028 Sum_probs=109.1
Q ss_pred eEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEe-cCCCeEEEecCCCeEEEEecCCCCce
Q 039044 5 SLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK-DDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 5 ~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
+..|.+ ++.++++-...+.|..|+..+... ... .... ...+++. +++ .++.+...+ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~------~~~-~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV------EVI-DLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE------EEE-ESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE------EEE-ecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEE
Confidence 578998 677777777789999999877642 111 1112 6778888 565 455554444 566698887543
Q ss_pred EEecc-----CCCcEEEEEecCCCCEEEEeeCC--------CeEEEEeCCCCCceeE--EecCCeEEEEecCCCEEE-EE
Q 039044 83 VTVAM-----HDAPIKEVAWIPEMNLLATGSWD--------KTLKYWDTRQPNPVHT--QQLPDRCYALTVRYPLMV-VG 146 (194)
Q Consensus 83 ~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~ 146 (194)
..... .....+++++.|+|++.++.... |.|..++.. ++.... -....+.++++|+++.|+ +-
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecc
Confidence 32221 34678999999999977776543 567777777 332221 223346899999998776 55
Q ss_pred cCCCcEEEEECCCCCe--e-eEEe-e-CCCcceeeEEEEecCCCeeEEE
Q 039044 147 TADRNLVVFNLQNPQT--E-FKRI-N-SPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~--~-~~~~-~-~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+..+.|..|++..... . .... . ....+..-.+++.++|..+++.
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 6678899999864332 1 1111 1 1122346788999988876653
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.93 E-value=8.5e-09 Score=68.22 Aligned_cols=144 Identities=12% Similarity=0.099 Sum_probs=89.2
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec-----CCCeEEEEecCCCCceEEec
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVA 86 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~ 86 (194)
++.+++++.||.+.+++.+.... ...........-.+.+....++.+.++. .-+..+.|+++..+....-.
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~----~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLA----LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred CCceEecCCCceEEEEechHHHh----hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 45789999999999998775321 1111111111112233333455444432 11235556654433322111
Q ss_pred cCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCce----eEEecCCeEEEEec-CCCEEEEEcCCCcEEEEECCC
Q 039044 87 MHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPV----HTQQLPDRCYALTV-RYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 87 ~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~~~dg~v~~~d~~~ 159 (194)
.-...|.+++-+|. .+.+++|+.||.+.+||.|+.... ..++.+...+-|+| ++..|+++++||.+--||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 12334899999995 456778888999999999987532 33344556788888 567899999999999999874
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.93 E-value=1.6e-08 Score=73.96 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=60.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
.|.|++++|+.+.++.|+.||.|.+||...+.. ......-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCee-------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 578999999999999999999999999876632 22234456789999999999999999999999998643
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.9e-07 Score=68.17 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=117.8
Q ss_pred CeeeEEEcCCCCEEEEeeCC-----CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEe----------c
Q 039044 2 SVSSLCFSPKANILVATSWD-----NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSG----------G 66 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~ 66 (194)
.|....|+|.++.||--... ..+.+..+..... .....-+.-.=..+-|-.+|.+|+.- +
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-----iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-----IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccce-----eeeccceeeeccEEEeccCCcEEEEEEEeeccccccc
Confidence 57788999998887754331 2345555554421 11111222223345676777777642 2
Q ss_pred CCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC---CCeEEEEeCCC-C---CceeEEe-cCCeEEEEec
Q 039044 67 CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQ-P---NPVHTQQ-LPDRCYALTV 138 (194)
Q Consensus 67 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~vwd~~~-~---~~~~~~~-~~~~~~~~~~ 138 (194)
.-..+.|+.++........-.-...|...+|-|.|+.+++-+. ..++.+|.+++ . +.+..+. ...+.+.|+|
T Consensus 423 ~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsP 502 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSP 502 (698)
T ss_pred eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcC
Confidence 2234667777766654444446678999999999998777653 35788888773 2 2333333 3457899999
Q ss_pred CCCEEEEE---cCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 139 RYPLMVVG---TADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 139 ~~~~l~~~---~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.|++++.+ +..|.+.++|+.-.. .+....+.....+.+.|.|.|+|+++++.
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~--~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYAD--LKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhh--hhhccCccccccccceECCCCCEEEEeee
Confidence 99998765 457889999998532 22233333345688999999999999875
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.92 E-value=3.3e-07 Score=72.37 Aligned_cols=181 Identities=11% Similarity=0.096 Sum_probs=122.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec----C
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL----L 77 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~----~ 77 (194)
.|.++.|..+...++.+..+|.|.+-|..+.. ......-...|.+++|+||++.++..+..+++.+-+- -
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 67889999999999999999999999777653 2333345678999999999999988887777765432 0
Q ss_pred C-------------------CCceEEecc---------------------CCCcEEEEEecCCCCEEEEee-----CCCe
Q 039044 78 S-------------------GGQPVTVAM---------------------HDAPIKEVAWIPEMNLLATGS-----WDKT 112 (194)
Q Consensus 78 ~-------------------~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~d~~ 112 (194)
. |+....+++ ....=+.+.|--||+++++.. ..+.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 0 000001111 011124589999999999843 3379
Q ss_pred EEEEeCCCCCceeE---EecCCeEEEEecCCCEEEEEc---CCCcEEEEECCCCCeeeEEeeCCCcc-eeeEEEEecCCC
Q 039044 113 LKYWDTRQPNPVHT---QQLPDRCYALTVRYPLMVVGT---ADRNLVVFNLQNPQTEFKRINSPLKY-QTRCVAAFPDQQ 185 (194)
Q Consensus 113 v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~---~dg~v~~~d~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~ 185 (194)
+++||.+ +..-.. ...-..+++|-|.|..+++-. .|+.|.+|..+....-.-.+..+... ++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 332221 123346899999999888753 35679999877654322222233333 389999999999
Q ss_pred eeEE
Q 039044 186 GFLV 189 (194)
Q Consensus 186 ~l~~ 189 (194)
.|++
T Consensus 303 iLAv 306 (1265)
T KOG1920|consen 303 ILAV 306 (1265)
T ss_pred ceee
Confidence 9987
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.92 E-value=2.6e-07 Score=66.61 Aligned_cols=167 Identities=12% Similarity=0.144 Sum_probs=112.9
Q ss_pred eEEEcCCCCEEEEee-----------CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEE--ecCCCeE
Q 039044 5 SLCFSPKANILVATS-----------WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFS--GGCDKQV 71 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~-----------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i 71 (194)
.+.|++.|++|+.-- ....+.|+++..... +.. ....++|...+|.|.++.+++ |-....+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~ 300 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----PVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASV 300 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-----cee-ccccccceeeeecccCCceeEEecccccce
Confidence 467888887765321 124577888774432 222 256789999999998887664 4578889
Q ss_pred EEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC---CeEEEEeCCCCCcee-EEecCC-eEEEEecCCCEEEEE
Q 039044 72 KMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD---KTLKYWDTRQPNPVH-TQQLPD-RCYALTVRYPLMVVG 146 (194)
Q Consensus 72 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~vwd~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~ 146 (194)
.++|++.. .. +......=+.+-|+|.+++++.++-| |.+-+||......+. .+.... +-+.|+|+++++.+.
T Consensus 301 s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 301 SVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred eecccccc-eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEec
Confidence 99998765 32 22234455678899999999998765 679999987655443 555544 455799999998876
Q ss_pred cC------CCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 147 TA------DRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 147 ~~------dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.. |..+.+||+..... + ..+.+.|.|.+++..+.
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~~-f---------el~~~~W~p~~~~~tts 417 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAKV-F---------ELTNITWDPSGQYVTTS 417 (561)
T ss_pred CCCcccccCcceEEEEecCchh-h---------hhhhccccCCcccceee
Confidence 53 67799999875431 1 23455566655554443
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.1e-07 Score=71.99 Aligned_cols=147 Identities=12% Similarity=0.199 Sum_probs=111.5
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCC------------CeEEEecCCCeE
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDG------------TTVFSGGCDKQV 71 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~~~~~d~~i 71 (194)
.++.|+|.| +||-|+ ...|.+-|..+-. .......|...|+.+.|.|.. -.|+++...|.|
T Consensus 19 ~A~Dw~~~G-LiAygs-hslV~VVDs~s~q-----~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS-HSLVSVVDSRSLQ-----LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccCccc-eEEEec-CceEEEEehhhhh-----hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 356788866 677666 4568888877653 355666788999999998732 257788889999
Q ss_pred EEEecCCCCceEEeccCCCcEEEEEecC---CC-CEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEEEec-CCCEE
Q 039044 72 KMWPLLSGGQPVTVAMHDAPIKEVAWIP---EM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYALTV-RYPLM 143 (194)
Q Consensus 72 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~~~~-~~~~l 143 (194)
.+||...+..+..+..|..++.+++|-+ +. ..|+.-.....+.+|+..+|+.+-+..... .++.+.| +.+.+
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 9999999988888999999999999977 33 467777778899999999999887766544 3566666 45666
Q ss_pred EEEcCCCcEEEEEC
Q 039044 144 VVGTADRNLVVFNL 157 (194)
Q Consensus 144 ~~~~~dg~v~~~d~ 157 (194)
..-+..|.+.+-+.
T Consensus 172 ~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKD 185 (1062)
T ss_pred EEEccCceEEEEec
Confidence 66666777666654
No 300
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.90 E-value=3.4e-10 Score=83.19 Aligned_cols=183 Identities=16% Similarity=0.225 Sum_probs=124.8
Q ss_pred eeeEEEcCC--CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec-CCCeEEEec----CCCeEEEEe
Q 039044 3 VSSLCFSPK--ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD-DGTTVFSGG----CDKQVKMWP 75 (194)
Q Consensus 3 v~~~~~~p~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~d~~i~~~d 75 (194)
+.|+++.-+ ..++++|..+|.|-+-....... .......++..+.++++|++ |.+.|++|- .|..+.|||
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCccc---ccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456666543 46889999999999988876543 22455667889999999998 667777773 345799999
Q ss_pred cCCC--CceE--Eecc-CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeEEec-CCeEEEEec-CCCEEEEEc
Q 039044 76 LLSG--GQPV--TVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHTQQL-PDRCYALTV-RYPLMVVGT 147 (194)
Q Consensus 76 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~~~~-~~~~~~~~~-~~~~l~~~~ 147 (194)
+.++ .+.. .+.. ......+++|..+.+.+++|...+.++++|+|... ....+.. -.+.+.++| .+.++++-.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence 9876 2222 1222 33456688999888999999999999999999432 2223322 335667788 666766655
Q ss_pred CCCcEEEEE-CCCCCeeeEEee---CCCcceeeEEEEecCCCeeEE
Q 039044 148 ADRNLVVFN-LQNPQTEFKRIN---SPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 148 ~dg~v~~~d-~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~l~~ 189 (194)
||.|-+|| .++-+.++.... .....++..++|.|....+++
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence 99999999 555544433221 122346889999997655443
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.3e-08 Score=76.28 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC---------------ceEEeccCCCcEEEEEecCCCCEEEEeeC
Q 039044 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG---------------QPVTVAMHDAPIKEVAWIPEMNLLATGSW 109 (194)
Q Consensus 45 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 109 (194)
.......|+.|+.+..++++|+.||.+++..+.+.. .-+++.+|+..|..+.|+.+.+.|-++..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 456678999999999999999999999999875421 12356789999999999999899999999
Q ss_pred CCeEEEEeCCCCCceeEEe-----cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 110 DKTLKYWDTRQPNPVHTQQ-----LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 110 d~~v~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
+|.|.+|-+-++....++. .-+.+++|..+|..+...-+||.|.+=.+...+ .+-+.. .......+.|+||.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeL--kg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKEL--KGQLLAHVLWSEDL 168 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhc--chheccceeecccH
Confidence 9999999988877543322 223567888899999999999998887776543 121111 11234578888887
Q ss_pred CeeEEE
Q 039044 185 QGFLVC 190 (194)
Q Consensus 185 ~~l~~~ 190 (194)
+.++.+
T Consensus 169 ~~~Lf~ 174 (1189)
T KOG2041|consen 169 EQALFK 174 (1189)
T ss_pred HHHHhh
Confidence 665543
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.7e-07 Score=67.58 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=95.8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecC-----CCeEEEecCCCeEEEEecCC--CCceE
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDD-----GTTVFSGGCDKQVKMWPLLS--GGQPV 83 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~--~~~~~ 83 (194)
+|.++++|+.||+|.|-.+.+... ........++.+++++|+ .+++++|+..| +.++.-+- .+...
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDE------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCcc------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 589999999999999998877642 333456788999999997 56899999999 87776432 11222
Q ss_pred EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---------eEEEEecCCCEEEEEcCCCcEEE
Q 039044 84 TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---------RCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
.+....++|.++.| .|+++|-++ |-.|++||+...+.+..++.+. ..+.|.++. .++. +...+|.|
T Consensus 155 ~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVI-GW~d~v~i 229 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVI-GWGDSVKI 229 (846)
T ss_pred eeecCccceEEEEe--cCcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEE-ecCCeEEE
Confidence 45567889999999 567888777 4557999999888776554432 133444333 3333 44455888
Q ss_pred EECC
Q 039044 155 FNLQ 158 (194)
Q Consensus 155 ~d~~ 158 (194)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7776
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.87 E-value=3.7e-08 Score=72.14 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=65.5
Q ss_pred cccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCC
Q 039044 42 ASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQP 121 (194)
Q Consensus 42 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 121 (194)
........+.|++++|+...++.|+.||.|.+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34457788999999999999999999999999998765433 2234566789999999999999999999999998643
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=4.5e-06 Score=57.71 Aligned_cols=184 Identities=11% Similarity=0.063 Sum_probs=119.8
Q ss_pred eeeEEEcC-CCCEEEEeeCCCe-EEEEecccCCcccccccccccCCCCC--eeEEEEecCCCeEEEecC-----CCeEEE
Q 039044 3 VSSLCFSP-KANILVATSWDNQ-VRCWEISRGGTGVASVPKASISHDHP--VLCSTWKDDGTTVFSGGC-----DKQVKM 73 (194)
Q Consensus 3 v~~~~~~p-~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~-----d~~i~~ 73 (194)
...++.+| ....++.+-.-|+ ..+||..++.. ...+....+. .---.|++||++|++.-. .|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-----~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-----LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-----eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEE
Confidence 46788999 4567777777665 77899987753 2122111111 112479999999998743 478999
Q ss_pred EecC-CCCceEEeccCCCcEEEEEecCCCCEEEEeeC------------------CCeEEEEeCCCCCceeEEec-----
Q 039044 74 WPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW------------------DKTLKYWDTRQPNPVHTQQL----- 129 (194)
Q Consensus 74 ~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~v~vwd~~~~~~~~~~~~----- 129 (194)
||.. +-..+.++..|.-....+.+.|+|+.|+.+.. +-++...|.++++.+.....
T Consensus 82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 9998 55667788877777788999999977776531 12466677788887766443
Q ss_pred --CCeEEEEecCCCEEEEEcCCCc-------EEEEECCCCCeeeEE---eeCCCcceeeEEEEecCCCeeEEEE
Q 039044 130 --PDRCYALTVRYPLMVVGTADRN-------LVVFNLQNPQTEFKR---INSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 130 --~~~~~~~~~~~~~l~~~~~dg~-------v~~~d~~~~~~~~~~---~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
+.+.+++..+|..++..-..|. |-+++....-..+.. ......+.+-+|++++++..+++++
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 4567888888876665544432 334443332111110 0123457789999999999887764
No 305
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.86 E-value=5.8e-06 Score=56.09 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=101.9
Q ss_pred CeeeEEEcCCC-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 2 SVSSLCFSPKA-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 2 ~v~~~~~~p~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.+..++|+|+. .++++....+.|..++.. ++. .........+..-.+++..++.++++--.++.+.++++....
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v----lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV----LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT---E----EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE----EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 47899999975 566677777877766654 221 111111224567888998888777777778999999884322
Q ss_pred c---e---EEe-----ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC---CCceeEE-----------ecCCeEEE
Q 039044 81 Q---P---VTV-----AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ---PNPVHTQ-----------QLPDRCYA 135 (194)
Q Consensus 81 ~---~---~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~-----------~~~~~~~~ 135 (194)
. . ..+ ..++..+..++|.|.++.|+.+-...-..++.++. ...+... ......+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1 1 112 12456789999999877777776665556665543 2222111 11235778
Q ss_pred EecCC-CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCc------ceeeEEEEecCCCeeEEE
Q 039044 136 LTVRY-PLMVVGTADRNLVVFNLQNPQTEFKRINSPLK------YQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 136 ~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~------~~v~~i~~~p~~~~l~~~ 190 (194)
++|.. .+++...++..|..+|....-.....+..+.. .+.-.|+|.|+|..++++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 88854 55666667788899995433222233332211 357899999999888775
No 306
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.9e-06 Score=57.56 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=91.2
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCc
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP 91 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 91 (194)
+..++.+..++.+..+|..+++..-...... ...............+..++.+..++.|..+|+++|+.+.........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeecccc-ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4456666677778888877665311100000 000111223333334778888888999999999999988776543322
Q ss_pred ----------E-EEEEecCCCCEEEEeeCCCe-EEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 92 ----------I-KEVAWIPEMNLLATGSWDKT-LKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 92 ----------v-~~~~~~~~~~~l~~~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+ ..+.+. ++ .+..++.++. +.+ |+.+++.+...............+..++.++.++.|..||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred CCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1 222222 44 6666666775 555 9999986654442222222667888888888999999999999
Q ss_pred CCeee
Q 039044 160 PQTEF 164 (194)
Q Consensus 160 ~~~~~ 164 (194)
++...
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 87544
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=5.2e-08 Score=73.31 Aligned_cols=173 Identities=16% Similarity=0.281 Sum_probs=118.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCC--CCCeeEEEEecCC--CeEEEecCCCeEEEEecC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISH--DHPVLCSTWKDDG--TTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~ 77 (194)
++.++..+|.|+-++.++.-| +.+-|+..... +.....| .-.+-.+.|+|.. .+-+.......-.+|++.
T Consensus 26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-----ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-----PPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred cccceeeccccchhhhhhhcC-eEEEeccCCCC-----CceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 467788999999999999877 66777776543 1111222 3346677888743 244444455567788876
Q ss_pred CCC--ce-EEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCC-ceeEEe---cCCeEEEEecCCCEEEEEcCC
Q 039044 78 SGG--QP-VTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPN-PVHTQQ---LPDRCYALTVRYPLMVVGTAD 149 (194)
Q Consensus 78 ~~~--~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~d 149 (194)
... .+ ..+.+|...|+++-|+|. ...+++++.|-.++.||+++.. ++.... .....+.|+-....+++.+..
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccC
Confidence 443 22 245689999999999995 5579999999999999999875 333332 344567787766666767777
Q ss_pred CcEEEEECCCCCeeeEEeeCCCcceeeEEEEe
Q 039044 150 RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAF 181 (194)
Q Consensus 150 g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~ 181 (194)
..|++||++.+..+...... +-..++.++|.
T Consensus 180 ~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fn 210 (1081)
T KOG0309|consen 180 NDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFN 210 (1081)
T ss_pred CceEEEeccCCCcceEEecc-cceeeehHHHh
Confidence 78999999998876655543 55556655543
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=9.8e-09 Score=78.67 Aligned_cols=146 Identities=14% Similarity=0.213 Sum_probs=110.6
Q ss_pred cccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCC--eEEEEeCC
Q 039044 42 ASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDK--TLKYWDTR 119 (194)
Q Consensus 42 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~vwd~~ 119 (194)
.+..+....+|++|+-+.+.|+.|+..|.|++|++.+|........|...|+.+.-+.+|..+++.+.-. ...+|++.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 3455778899999999999999999999999999999999989999999999999998998877765433 46789987
Q ss_pred C-CCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeC--CCcceeeEEEEecCCCeeE
Q 039044 120 Q-PNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 120 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~ 188 (194)
+ +.+.+++. ...++.|+...+.-+.|+......+||+.+.......+.. .....-++..|+|+.+.++
T Consensus 1176 s~~~~~Hsf~-ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1176 STGGPRHSFD-EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred cccCcccccc-ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 5 33444443 3457788877777777777778999999987643332221 1223336778888876654
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.2e-07 Score=71.26 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=85.2
Q ss_pred eEEEcCCCCEEEEeeC----CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 5 SLCFSPKANILVATSW----DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
-..|+|...++++++. .|.|.||- ++++ +.......-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGE------Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGE------PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCC------CCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3579999999998864 57888884 2332 22222223345679999998889999999999999987766
Q ss_pred ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 81 QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
.-.....|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 655556799999999999999999999999999999765
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.73 E-value=2e-05 Score=54.55 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=107.3
Q ss_pred EEEcCCCCEEEEeeC-----CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec--------------
Q 039044 6 LCFSPKANILVATSW-----DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG-------------- 66 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------------- 66 (194)
-.|+|||++|++.=. .|.|-+||....- .....+..+.-....+.+.||++.|+.+.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~----~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL 131 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGY----RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL 131 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCc----EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence 368999999988533 4789999998331 22344455555567788999998777662
Q ss_pred ----CCCeEEEEecCCCCceEE--e--ccCCCcEEEEEecCCCCEEEEeeCCC-------eEEEEeCCCCCceeEEec--
Q 039044 67 ----CDKQVKMWPLLSGGQPVT--V--AMHDAPIKEVAWIPEMNLLATGSWDK-------TLKYWDTRQPNPVHTQQL-- 129 (194)
Q Consensus 67 ----~d~~i~~~d~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~d~-------~v~vwd~~~~~~~~~~~~-- 129 (194)
.+..+...|..+|+.+.. + ..|...++.+++.++|..++..-..| .|-+++.. +.+..+..
T Consensus 132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~ 209 (305)
T PF07433_consen 132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPE 209 (305)
T ss_pred ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCCh
Confidence 223455666777777665 4 33777899999999987666554333 23444332 22332222
Q ss_pred --------CCeEEEEecCCCEEEEEc-CCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 130 --------PDRCYALTVRYPLMVVGT-ADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 130 --------~~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
-.-+++++.++..+++.+ ..+.+.+||..+++..- .. .-..+..++-.+++
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~-~~---~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG-SV---PLPDACGVAPTDDG 269 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee-cc---ccCceeeeeecCCc
Confidence 235789999998775554 56779999999876321 11 11224556555555
No 311
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=2.5e-05 Score=56.90 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=121.3
Q ss_pred eeEEEcCCCCEEE-EeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC---CCeEEEEecCCC
Q 039044 4 SSLCFSPKANILV-ATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC---DKQVKMWPLLSG 79 (194)
Q Consensus 4 ~~~~~~p~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~ 79 (194)
..++.++.+..++ ....+..|.+.|...... .....-......++++|+++.+..+.. ++.+.+.|..+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~------~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV------LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccce------eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 3567788777444 444458899999655432 111112225678999999988777655 688999998888
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCcee-E----Ee--cCCeEEEEecCCCEEEEEcCC--
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNPVH-T----QQ--LPDRCYALTVRYPLMVVGTAD-- 149 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~~~~~-~----~~--~~~~~~~~~~~~~~l~~~~~d-- 149 (194)
+.......-..+ ..+++.|+|+.+.... .++.|.+.|........ . .. .....+.+++++.++......
T Consensus 151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 887775443344 8999999999766655 68999999977665553 1 11 122568899999976665544
Q ss_pred -CcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 150 -RNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 150 -g~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+.+...|..+............. ....+..+|+|+.+.+.
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEE
Confidence 58999998876543221222222 56788999999887765
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=2.8e-07 Score=70.89 Aligned_cols=140 Identities=13% Similarity=0.095 Sum_probs=105.7
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC---------CCeEEEEecCCCC
Q 039044 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC---------DKQVKMWPLLSGG 80 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~ 80 (194)
.+++.+.+|...|+|.+-|.++.+ ....+..|.+.+..+.. .|+.|++++. |..|+|||++..+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~-----~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFE-----TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCc-----eeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 357899999999999999988774 36778889998877665 5888888874 4458999999877
Q ss_pred ceEEeccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeC---CCCCceeEE----ecCCeEEEEecCCCEEEEEcCCCcE
Q 039044 81 QPVTVAMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDT---RQPNPVHTQ----QLPDRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~---~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~v 152 (194)
.+..+.-+.++ .-+.|+|. ...+++++..|...+-|. .+...-..+ ......++++++++.++.|..+|.|
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 76665544443 45778885 456888888999999993 333211111 1224688999999999999999999
Q ss_pred EEEEC
Q 039044 153 VVFNL 157 (194)
Q Consensus 153 ~~~d~ 157 (194)
.+|--
T Consensus 337 ~~wa~ 341 (1118)
T KOG1275|consen 337 NLWAD 341 (1118)
T ss_pred eeecC
Confidence 99973
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=2.6e-08 Score=76.47 Aligned_cols=173 Identities=17% Similarity=0.286 Sum_probs=118.1
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCC--eEEEEecCC-C
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK--QVKMWPLLS-G 79 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~-~ 79 (194)
-+|++|+-+.+.|+.|+..|.|++|++.++. .......|..+++-+.-+.+|..+++.+.-. ...+|++.+ +
T Consensus 1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred eeeEEeecCCceEEeeeccceEEEEEccCcc-----ccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 4799999999999999999999999999884 3667788999999999998998777654433 467899865 2
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-------CCeEEEEecCCCEEEEEcCCCcE
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-------PDRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~v 152 (194)
.....+. .-.++.|+.....-+.|.......+||+.++.++.+.-. ..++..|+|+...++ .||
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--
Confidence 3333443 335678877654445555556788999999887655322 235778889887776 344
Q ss_pred EEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 153 VVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 153 ~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+||.|..+. ...+.. .. .--.-.|+|.|..++.-++
T Consensus 1250 vLWDvR~~~a-Ih~FD~-ft-~~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1250 VLWDVRIPEA-IHRFDQ-FT-DYGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred eeeeeccHHH-Hhhhhh-he-ecccccccCCCceEEeech
Confidence 5788887642 221111 11 1112247777777766554
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.68 E-value=3.1e-06 Score=61.55 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=88.3
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCC-
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA- 90 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~- 90 (194)
+..++.++.+|.+..||..+++.. -... .. ...... ..+..++.++.+|.+..+|..+++.+........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~-----W~~~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVL-----WKRD-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEE-----Eeec-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 456777888999999999876431 1110 11 111112 2466788888999999999999887655432111
Q ss_pred cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEec--CCCEEEEEcCCCcEEEE
Q 039044 91 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV--RYPLMVVGTADRNLVVF 155 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~~~ 155 (194)
....... .+..+++++.+|.|.++|.++++.+.+.+.....+..+| .++.|+.++.||.|+.|
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 1222222 456888899999999999999999887776543222222 34568899999998875
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=4e-06 Score=64.36 Aligned_cols=177 Identities=14% Similarity=0.157 Sum_probs=114.4
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCC-eeEEEEecCCCeEEEecCCC-----eEEEEecCCC-
Q 039044 7 CFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHP-VLCSTWKDDGTTVFSGGCDK-----QVKMWPLLSG- 79 (194)
Q Consensus 7 ~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~- 79 (194)
+|++.+..++.|+.+|.|.+++-.-. ....+..+... +..+....+.++|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 56788899999999998877764332 11333344444 44444444446777776664 4899998643
Q ss_pred --C---ceE--Eecc-----CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC---C-C-Cc--eeEEecCCeEEEEecCC
Q 039044 80 --G---QPV--TVAM-----HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR---Q-P-NP--VHTQQLPDRCYALTVRY 140 (194)
Q Consensus 80 --~---~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~---~-~-~~--~~~~~~~~~~~~~~~~~ 140 (194)
+ ++. .+.. ...++.+++.+.+-+.++.|-.+|.|..+.-. . + +. .+.-..+.+.+++..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1 221 1222 24578899999998889999999999988421 1 1 11 12223466788888888
Q ss_pred CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 141 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 141 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
..++....-..|.+|.+.... +.......++..++|..+++....+++|
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred ceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEe
Confidence 773333444569999998544 5555566678889999998876644443
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1e-06 Score=62.05 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=68.2
Q ss_pred cccCCCCCeeEEEEecCCC-eEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCC-EEEEeeCCCeEEEEeCC
Q 039044 42 ASISHDHPVLCSTWKDDGT-TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTR 119 (194)
Q Consensus 42 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~vwd~~ 119 (194)
....+...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+.+++|..+.. ++..|-..|.|.+||+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4556778899999999777 7888999999999999998888888877 7899999998654 56667778999999999
Q ss_pred CCC
Q 039044 120 QPN 122 (194)
Q Consensus 120 ~~~ 122 (194)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 765
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.67 E-value=3.2e-06 Score=61.96 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=106.5
Q ss_pred eeeEEEcCCCCEEEEee---CC-CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEE-EecCCCe--EEEEe
Q 039044 3 VSSLCFSPKANILVATS---WD-NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVF-SGGCDKQ--VKMWP 75 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~---~d-~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~~~d 75 (194)
+..-+|+|++..++... .. ..+.+++++.+.. .... ...+.-..-+|+|||++|+ +...||. |.++|
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---~~i~---~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---PVIL---NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---ceee---ccCCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 34557888887655432 22 3588888888754 1111 1333344568999998766 4555665 66667
Q ss_pred cCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC-C--eEEEEeCCCCCcee-EEe-cCCeEEEEecCCCEEEEEcC-C
Q 039044 76 LLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD-K--TLKYWDTRQPNPVH-TQQ-LPDRCYALTVRYPLMVVGTA-D 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~v~vwd~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~-d 149 (194)
+..+... .+....+.-..-.|+|+|++++..++. | .|.++|........ +.. .......++|+|++++..+. +
T Consensus 269 l~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 269 LDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG 347 (425)
T ss_pred CCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence 7766633 344333444467899999998877653 3 46667776555321 112 22236788999999888775 3
Q ss_pred Cc--EEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 150 RN--LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 150 g~--v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
|. |.+.|+.+... ...+. .......-.|.|+|+.+...
T Consensus 348 g~~~i~~~~~~~~~~-~~~lt--~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 348 GQWDIDKNDLASGGK-IRILT--STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CceeeEEeccCCCCc-EEEcc--ccccCCCCCcCCCCceEEEe
Confidence 44 66677766543 22221 22333456677777776654
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.67 E-value=2.9e-05 Score=52.55 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=90.6
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEe
Q 039044 6 LCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV 85 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 85 (194)
++.+++|+.||.-- |..|.|-...+.-................-..++|+||+..|+.+...|+|++||+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 56778898888755 77787776665432111111222233445678999999999999999999999998753 33333
Q ss_pred cc-------CCCcEEEEEecCC------CCEEEEeeCCCeEEEEeCCC-----CCceeEEec------CCeEEEEecCCC
Q 039044 86 AM-------HDAPIKEVAWIPE------MNLLATGSWDKTLKYWDTRQ-----PNPVHTQQL------PDRCYALTVRYP 141 (194)
Q Consensus 86 ~~-------~~~~v~~~~~~~~------~~~l~~~~~d~~v~vwd~~~-----~~~~~~~~~------~~~~~~~~~~~~ 141 (194)
.. -...|..|.|.+. ...|++-..+|.++-|-+.. .+..+++.. .+.++.++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 2356777777652 22577777888888776532 223344332 456788888877
Q ss_pred EEEEEcC
Q 039044 142 LMVVGTA 148 (194)
Q Consensus 142 ~l~~~~~ 148 (194)
.|+.|+.
T Consensus 161 LLlVgG~ 167 (282)
T PF15492_consen 161 LLLVGGC 167 (282)
T ss_pred EEEEecc
Confidence 7776653
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.66 E-value=8.4e-06 Score=60.05 Aligned_cols=162 Identities=11% Similarity=0.159 Sum_probs=91.6
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
...+.++|+++.+++++ ||.-.++...... . ...+.-....|.++ +.+++-..++.|.++.--+.+..
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r-------~---k~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWR-------N---KAFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTE-------E---EEEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCc-------c---cccCceeEEEEecC-ccEEEEECCCeEEEEEcCccccc
Confidence 46899999999999955 7777788732211 1 12344567889984 45777777888999743333332
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC-eEEEEecCCCEEEEEcCCCcEEEEECCCC-
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD-RCYALTVRYPLMVVGTADRNLVVFNLQNP- 160 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~v~~~d~~~~- 160 (194)
..+.. +..+..+-. |..|+..+ ++.|.+||+.+++.+..+..+. +.+.|++++++++..+.+ .+++++....
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred eEEcC-CcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 33332 223444433 77777776 4589999999999999999885 899999999999999866 4777665432
Q ss_pred ---------CeeeEEeeCCCcceeeEEEEecC
Q 039044 161 ---------QTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 161 ---------~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+..+.... .....|.+..|..+
T Consensus 177 ~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIH-EISERIKSGCWVED 207 (443)
T ss_dssp HHHBTTTB-GGGEEEEE-EE-S--SEEEEETT
T ss_pred cccccccCchhceEEEE-EecceeEEEEEEcC
Confidence 00122221 12356777777765
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.65 E-value=8.1e-06 Score=61.60 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=65.6
Q ss_pred CCeEEEEecCC----CCceEEeccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCCCCc------------eeEEec-
Q 039044 68 DKQVKMWPLLS----GGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQPNP------------VHTQQL- 129 (194)
Q Consensus 68 d~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~~~~------------~~~~~~- 129 (194)
++.|.+.|.++ +..+..+-.-......+.++|||+++++++ .+.++.|.|+.+.+. ..+.+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 35677888776 323333323456678899999999877765 489999999987553 222222
Q ss_pred -CCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 130 -PDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 130 -~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
.....+|+.+|....+...|..|..||+.+
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 224678888998888888899999999876
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.4e-05 Score=61.09 Aligned_cols=184 Identities=14% Similarity=0.183 Sum_probs=124.7
Q ss_pred CeeeEEEcCCC------------CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec---CC-CeEEEe
Q 039044 2 SVSSLCFSPKA------------NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD---DG-TTVFSG 65 (194)
Q Consensus 2 ~v~~~~~~p~~------------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~ 65 (194)
.|+.+.|.|.. -+||++...|.|.+||..... ....+..+..++..++|-+ +. ..|++-
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-----VINWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-----hhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 57788887731 257778888999999998774 3556677889999999977 33 355666
Q ss_pred cCCCeEEEEecCCCCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCC-CC---ceeEEec--C--------
Q 039044 66 GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ-PN---PVHTQQL--P-------- 130 (194)
Q Consensus 66 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~-~~---~~~~~~~--~-------- 130 (194)
.....+.+|+..+|+.............|+.+.| +.+.+..-+..|.+.+-+.-. .+ +.++++. +
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 6678899999999999988877777888899999 777777777778777765432 11 1121111 0
Q ss_pred -------------C--------eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCC-eeE
Q 039044 131 -------------D--------RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQ-GFL 188 (194)
Q Consensus 131 -------------~--------~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~ 188 (194)
. ..++|+|.-+.++.......+.++|++-.... ..... ..+.+.-+.+-|+++ -.+
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l-~vvpi-er~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL-AVVPI-ERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee-EEEEe-ccCCcceeEeccCCCcceE
Confidence 0 13567777776777777788999999865533 22222 223455666777653 344
Q ss_pred EEEe
Q 039044 189 VCIH 192 (194)
Q Consensus 189 ~~~~ 192 (194)
.|.|
T Consensus 290 fclH 293 (1062)
T KOG1912|consen 290 FCLH 293 (1062)
T ss_pred EEEe
Confidence 4544
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1e-06 Score=66.05 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=84.8
Q ss_pred EEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEE--
Q 039044 7 CFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT-- 84 (194)
Q Consensus 7 ~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-- 84 (194)
+++..+++++.|+.-|.+++|+-..+.. ......+....+.....+++..+++.|+..|.|.++.++...+...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~----~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEM----RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhh----hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3445678999999999999999777642 2222223455667778888889999999999999999877543211
Q ss_pred ---e-ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 85 ---V-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 85 ---~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
. ..|+..|++++|++++..+.+|...|+|..-.+..
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 23788999999999999999999999998877765
No 323
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=4.5e-07 Score=74.47 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEec-cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 46 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
+-..+.++.-+|...+-+||+.||.|++|....+..+..++ ..+..|+.+.|+.+|+.+..+..||.+.+|... +++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 34557777778888899999999999999998888877664 234889999999999999999999999999987 5555
Q ss_pred eEEecCCeEE-EEecCCCEEEEEc---CCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 125 HTQQLPDRCY-ALTVRYPLMVVGT---ADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 125 ~~~~~~~~~~-~~~~~~~~l~~~~---~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
...+.+...+ .|-.-+..+++++ .++.+.+||...+....... ..|.+.++++++-|..+.|++|..
T Consensus 2286 ~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC
Confidence 5444433211 2222224555543 47889999986544322222 558888999999999999999853
No 324
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.7e-07 Score=67.55 Aligned_cols=91 Identities=14% Similarity=0.253 Sum_probs=72.5
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCee-EEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVL-CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
|.-+.|+|.-.++|.+..+|.+.+..++-.. .....-+..+++ +++|.|||+.|+.|-.||+|++.|.+++..
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qR------lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQR------LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccce------eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 5678999999999999999999999887432 233333555555 999999999999999999999999999988
Q ss_pred eEEe-ccCCCcEEEEEecC
Q 039044 82 PVTV-AMHDAPIKEVAWIP 99 (194)
Q Consensus 82 ~~~~-~~~~~~v~~~~~~~ 99 (194)
+... ..-...|.++-|.|
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7652 12346778888864
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=4e-05 Score=52.03 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=91.8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEe-ccCC
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHD 89 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~ 89 (194)
++..+++++.++.+..||..+++. .-.... ..++.... ...+..++.+..++.+..+|..+|+.+... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~-----~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKV-----LWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEE-----EEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----EEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccc
Confidence 566777778899999999987753 111111 11111112 224556677778889999999999998774 3221
Q ss_pred ---CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe------------EEEEecCCCEEEEEcCCCcEEE
Q 039044 90 ---APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR------------CYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 90 ---~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
...........+..++.+..++.|..+|+++++.+........ .......+..++.++.++.+.-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVA 187 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEE
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEE
Confidence 1112222222477888888899999999999998766654321 1222223337888888886444
Q ss_pred EECCCCCeee
Q 039044 155 FNLQNPQTEF 164 (194)
Q Consensus 155 ~d~~~~~~~~ 164 (194)
+|+.+++...
T Consensus 188 ~d~~tg~~~w 197 (238)
T PF13360_consen 188 VDLATGEKLW 197 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEE
Confidence 4999987543
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=3e-05 Score=61.94 Aligned_cols=160 Identities=12% Similarity=0.165 Sum_probs=98.2
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCC---ccc---------c------ccccccc------------------
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGG---TGV---------A------SVPKASI------------------ 44 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~---~~~---------~------~~~~~~~------------------ 44 (194)
+.|.+++|+||++.++..+.++++.+....-.. ... . .....+.
T Consensus 110 ~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 110 NGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred CceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 368899999999999999988888776542100 000 0 0000000
Q ss_pred C---CCCCeeEEEEecCCCeEEEe-----cCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee---CCCeE
Q 039044 45 S---HDHPVLCSTWKDDGTTVFSG-----GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS---WDKTL 113 (194)
Q Consensus 45 ~---~~~~i~~~~~~~~~~~l~~~-----~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v 113 (194)
+ ....=+.+.|--||+++++. ..-..|++||-+ |..-..-......=.+++|-|.|.++++.. .|+.|
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I 268 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI 268 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence 0 11122458999999999873 333789999966 332221122233346799999999998864 35678
Q ss_pred EEEeCCC---CCceeEE---ecCCeEEEEecCCCEEEE---EcCCCcEEEEECCCCC
Q 039044 114 KYWDTRQ---PNPVHTQ---QLPDRCYALTVRYPLMVV---GTADRNLVVFNLQNPQ 161 (194)
Q Consensus 114 ~vwd~~~---~~~~~~~---~~~~~~~~~~~~~~~l~~---~~~dg~v~~~d~~~~~ 161 (194)
.++.-+. ++-.... ..+...++|+.++..|++ ......|++|-..+..
T Consensus 269 vffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 269 VFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred EEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 8887432 1111111 122567899999998887 4445559999887654
No 327
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.55 E-value=2.7e-05 Score=56.67 Aligned_cols=144 Identities=17% Similarity=0.110 Sum_probs=92.4
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCC
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA 90 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 90 (194)
.+..+++++.++.+..+|..+++..- ..... ........ .++..++.++.++.+..+|.++|+.+...... .
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W---~~~~~--~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLW---RVDLD--ERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-S 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEee---eecCC--CCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-c
Confidence 35678888889999999988775311 01111 11111112 24678888889999999999999887665422 2
Q ss_pred cEEE-EEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEE----e--cCCCEEEEEcCCCcEEEEECCCCCee
Q 039044 91 PIKE-VAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYAL----T--VRYPLMVVGTADRNLVVFNLQNPQTE 163 (194)
Q Consensus 91 ~v~~-~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~----~--~~~~~l~~~~~dg~v~~~d~~~~~~~ 163 (194)
.+.+ ... .+..++.++.++.+..||.++++.+-+.........+ + ..+..++.+..+|.+..+|+++++..
T Consensus 136 ~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 136 EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 2221 111 3456677778999999999999877665443211110 0 12346788888999999999888754
Q ss_pred e
Q 039044 164 F 164 (194)
Q Consensus 164 ~ 164 (194)
.
T Consensus 214 W 214 (377)
T TIGR03300 214 W 214 (377)
T ss_pred e
Confidence 4
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.6e-07 Score=63.27 Aligned_cols=95 Identities=14% Similarity=0.177 Sum_probs=72.1
Q ss_pred EEEEecCCCCceEEeccCCCcEEEEEecCCCC-EEEEeeCCCeEEEEeCCCCCceeEEecCC--eEEEEecCC-CEEEEE
Q 039044 71 VKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-LLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTVRY-PLMVVG 146 (194)
Q Consensus 71 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~-~~l~~~ 146 (194)
+++.+..+-+...-+..+...|.+++|+|..+ ++..++.+..|+|.|+++...+.....+. .+.+|+-+. .+++.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 55555444455555566778899999999766 78889999999999999988877766654 345555544 578889
Q ss_pred cCCCcEEEEECCCCCeeeE
Q 039044 147 TADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~ 165 (194)
-.+|.|.|||++..+.++.
T Consensus 255 l~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred ccCceEEEEEccCCCchHh
Confidence 9999999999998775443
No 329
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.49 E-value=9e-06 Score=63.34 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=90.2
Q ss_pred CCCeEEEe-cCCCeEEEEecCCCCceEEeccCCCc-EEEEEecC-----CCCEEEEeeCCCeEEEEeCCCCC--ceeE--
Q 039044 58 DGTTVFSG-GCDKQVKMWPLLSGGQPVTVAMHDAP-IKEVAWIP-----EMNLLATGSWDKTLKYWDTRQPN--PVHT-- 126 (194)
Q Consensus 58 ~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~v~vwd~~~~~--~~~~-- 126 (194)
+.++|+.- .....++-.|++.|+.+.++..+... |..++-.. +....+.|-.++.+..||.|-.. .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44444443 45678999999999999999877654 65554321 12345567778999999999643 2211
Q ss_pred --Eec--CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 127 --QQL--PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 127 --~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
... .-.|++-+.+| +||+|+.+|.||+||-- +. ..+....+...+|..|..+.||+++++...
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 111 11344444444 89999999999999943 33 245555667899999999999999988754
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=6.7e-06 Score=63.52 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=61.3
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
+++++|+|..-.|+.|-.-|.+.+|...+.+. ......|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 56899999998999999999999999887643 34455799999999999999999999999999999765
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.47 E-value=5.4e-05 Score=55.90 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred CCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 45 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
........+.++|++++++. +.+|...+|........ ..+.-...+|.++++ +++-...+.|.++.--+.+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence 34556789999999998888 46788888883222221 124456788998554 666666889999643333444
Q ss_pred eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 125 HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
..+..+..+-.+.. |..|...+.+ .|.+||..+.+. ...... .+|..+.|+++|++++..+
T Consensus 103 k~i~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~-i~~i~v---~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG-GNLLGVKSSD-FICFYDWETGKL-IRRIDV---SAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp -----SS-EEEEE--SSSEEEEETT-EEEEE-TTT--E-EEEESS----E-EEEEE-TTSSEEEEE-
T ss_pred eEEcCCcccceEEc-CcEEEEECCC-CEEEEEhhHcce-eeEEec---CCCcEEEEECCCCEEEEEe
Confidence 45555543333333 7777766644 799999998763 344422 2489999999999988764
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=4.5e-08 Score=72.42 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=99.8
Q ss_pred CeeeEEEcC-CCCEEEEeeC----CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEec
Q 039044 2 SVSSLCFSP-KANILVATSW----DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 76 (194)
..++++|++ |.+.||+|-. |..+.|||+.+.-...........+......+++|..+.+.+.+|.....+.++|+
T Consensus 104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL 183 (783)
T ss_pred cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence 357889998 5667777642 56799999987622111111111123445568999988899999999999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecC-CCCEEEEeeCCCeEEEEe-CCCCC-ceeEE-------ecCCeEEEEecCCC-EEEE
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIP-EMNLLATGSWDKTLKYWD-TRQPN-PVHTQ-------QLPDRCYALTVRYP-LMVV 145 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd-~~~~~-~~~~~-------~~~~~~~~~~~~~~-~l~~ 145 (194)
+...... .......+..+...| .+.++++-. |+.|.+|| .++-+ ++... ......++++|... .+++
T Consensus 184 Rqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~ 261 (783)
T KOG1008|consen 184 RQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAV 261 (783)
T ss_pred hhhhhhh-hhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhh
Confidence 8432211 112344567788888 778887766 99999999 44432 22111 11234677887543 3444
Q ss_pred EcC-CCcEEEEECCC
Q 039044 146 GTA-DRNLVVFNLQN 159 (194)
Q Consensus 146 ~~~-dg~v~~~d~~~ 159 (194)
.+. .++|+.+|+..
T Consensus 262 l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 262 LSRDSITIRLYDICV 276 (783)
T ss_pred hccCcceEEEecccc
Confidence 444 56799999863
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.42 E-value=2.5e-05 Score=57.40 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=92.5
Q ss_pred cCCCCCeeEEEEecCCCeEEEe---cCC-CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee-CCC--eEEEE
Q 039044 44 ISHDHPVLCSTWKDDGTTVFSG---GCD-KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS-WDK--TLKYW 116 (194)
Q Consensus 44 ~~~~~~i~~~~~~~~~~~l~~~---~~d-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~v~vw 116 (194)
......+..-+|+|+++.++-. ... ..+.++++++++...... ....-...+|+|+|++++.+. .|| .|.++
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 3344556677899988876543 222 468999999887765443 334445678999999877654 455 46677
Q ss_pred eCCCCCcee--EEecCCeEEEEecCCCEEEEEcC-CCc--EEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 117 DTRQPNPVH--TQQLPDRCYALTVRYPLMVVGTA-DRN--LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 117 d~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-dg~--v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
|+..++... ........-.|+|+|++++..+. .|. |.++|++.... ..+....... ..-.|+|||++++...
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~-~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGN-SNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCC-cCccCCCCCCEEEEEe
Confidence 887766333 11222346789999998877665 444 66667766553 2232222222 2778999999998865
No 334
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.8e-06 Score=63.11 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=69.8
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEE-EEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIK-EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 125 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~ 125 (194)
.-.+.-+.|+|.-..+|.+..+|.+.+..+. -+.+..+.-+...++ +++|.|||+.|+.|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4457789999999999999999999999987 677788876676777 99999999999999999999999999988766
Q ss_pred E
Q 039044 126 T 126 (194)
Q Consensus 126 ~ 126 (194)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 5
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.36 E-value=2e-06 Score=40.06 Aligned_cols=38 Identities=37% Similarity=0.554 Sum_probs=32.8
Q ss_pred CceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEe
Q 039044 80 GQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD 117 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd 117 (194)
+....+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556677888999999999889999999999999996
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=2.4e-05 Score=56.43 Aligned_cols=167 Identities=17% Similarity=0.209 Sum_probs=88.9
Q ss_pred cCCCCEEEEee---------CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 9 SPKANILVATS---------WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 9 ~p~~~~l~~~~---------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
|||+++++... ..+.+.+||+.++.. ..+......+....|+|+|+.++-.. ++.|.+++..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~------~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI------TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE------EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce------EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 58888777642 235688899888642 12222256788999999999988874 678999988766
Q ss_pred CceE-EeccC----------------CCcEEEEEecCCCCEEEEeeCC-CeEEEEe---CCCCCceeEEecCCeEEEEec
Q 039044 80 GQPV-TVAMH----------------DAPIKEVAWIPEMNLLATGSWD-KTLKYWD---TRQPNPVHTQQLPDRCYALTV 138 (194)
Q Consensus 80 ~~~~-~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d-~~v~vwd---~~~~~~~~~~~~~~~~~~~~~ 138 (194)
...+ +..+. -..-..+-|+|++++|+....| ..|..+. ...... .......+..-.
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~YPk 150 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRYPK 150 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE--B
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCcccccccCC
Confidence 3332 11110 1123568899999998887543 3333332 221111 000001111111
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeeeEEee---CCCcceeeEEEEecCCCeeEE
Q 039044 139 RYPLMVVGTADRNLVVFNLQNPQTEFKRIN---SPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 139 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~l~~ 189 (194)
-|.-.. .-.+.++|+.+++....... ......+..+.|.++++.+++
T Consensus 151 ~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 151 AGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp TTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 121111 11266788877664221221 234567889999999885544
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.6e-05 Score=55.37 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=104.4
Q ss_pred eeeEEEcCCCCEEEEeeC-CCeEEEEecccCCcccccccccccCCCCCeeEEEEe-cCC---CeEE-EecCCCeEEEEec
Q 039044 3 VSSLCFSPKANILVATSW-DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK-DDG---TTVF-SGGCDKQVKMWPL 76 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~---~~l~-~~~~d~~i~~~d~ 76 (194)
|.+++.+-++.++.+.+. |..++++|+..-..... ..+.--.+ .+.|. ..| ..++ +.-.++.+.++|-
T Consensus 56 I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm---iKL~~lPg---~a~wv~skGd~~s~IAVs~~~sg~i~VvD~ 129 (558)
T KOG0882|consen 56 ILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM---IKLVDLPG---FAEWVTSKGDKISLIAVSLFKSGKIFVVDG 129 (558)
T ss_pred HHhhhccccceeEeeccCcccceeEEEeeccchhhh---cccccCCC---ceEEecCCCCeeeeEEeecccCCCcEEECC
Confidence 456777888999999777 99999999987542100 11111111 12222 222 1233 3346789999997
Q ss_pred CCCCce--EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC------CCceeE------------EecCCeEEEE
Q 039044 77 LSGGQP--VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ------PNPVHT------------QQLPDRCYAL 136 (194)
Q Consensus 77 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~------~~~~~~------------~~~~~~~~~~ 136 (194)
....+. ..-.-|..+|..+.+++.+..+++....|.|.-|.... .+.... .+....++.+
T Consensus 130 ~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 130 FGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred cCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence 665432 22346889999999999999999988899999998763 111111 1223468999
Q ss_pred ecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 137 TVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 137 ~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
+|++..+.+-+.|..|++++.++++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccCcccccCcccEEEEEEeccch
Confidence 9999999999999999999998765
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.28 E-value=0.00063 Score=49.72 Aligned_cols=189 Identities=11% Similarity=0.035 Sum_probs=100.7
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccc---cccCCCCCeeEEEEec-----CC---CeEEEecCCC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPK---ASISHDHPVLCSTWKD-----DG---TTVFSGGCDK 69 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~-----~~---~~l~~~~~d~ 69 (194)
++|++++.+ |=-++|.|.++|.+.|.|++....-...... ........++++.|.- |+ -.+++|...|
T Consensus 87 g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 87 GPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp -SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 578899987 5569999999999999999665321111111 1122455688888863 22 3688999999
Q ss_pred eEEEEecC-CC-C-ce----EEeccCCCcEEEEE-ecCC-C-------------------CEEEEeeCCCeEEEEeCCCC
Q 039044 70 QVKMWPLL-SG-G-QP----VTVAMHDAPIKEVA-WIPE-M-------------------NLLATGSWDKTLKYWDTRQP 121 (194)
Q Consensus 70 ~i~~~d~~-~~-~-~~----~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~v~vwd~~~~ 121 (194)
.+.+|.+. .. . .. .....+.++|..+. ++.+ | +-++....+..++++...+.
T Consensus 166 ~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~ 245 (395)
T PF08596_consen 166 NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKS 245 (395)
T ss_dssp EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT--
T ss_pred CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCC
Confidence 99999874 11 1 11 11123555655554 2211 1 12333344789999999888
Q ss_pred CceeEEecC-C--eEEEEe-----cCCCEEEEEcCCCcEEEEECCCCCeeeEEee--CCCcceeeEEEEecCCCeeEEE
Q 039044 122 NPVHTQQLP-D--RCYALT-----VRYPLMVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 122 ~~~~~~~~~-~--~~~~~~-----~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+..++.... . ....+. ..+..|++-..+|.+++|.+...+....... ......+....++++|+.++..
T Consensus 246 k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 246 KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp -EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEe
Confidence 776655422 1 123332 2456788889999999999998775332221 1122345677889999877654
No 339
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8.9e-06 Score=58.31 Aligned_cols=176 Identities=15% Similarity=-0.026 Sum_probs=117.0
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC-CCeEEEEecCCCCceEE--ecc
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-DKQVKMWPLLSGGQPVT--VAM 87 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~--~~~ 87 (194)
-.+++.+++.||.++.|.-..... .........|...+.+++.+-++..+.+.+. |..++++|+++-..+.- +..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isG--vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISG--VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccc--eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc
Confidence 457899999999999998654211 1334556678889999999999999999887 99999999987654432 222
Q ss_pred CCCcEEEEEecCC-C-CEEEE-eeCCCeEEEEeCCCCCc-e----eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 88 HDAPIKEVAWIPE-M-NLLAT-GSWDKTLKYWDTRQPNP-V----HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 88 ~~~~v~~~~~~~~-~-~~l~~-~~~d~~v~vwd~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
-++.+..+ .++. . ..++. .-.++.+.++|-+...+ . ..+..+..++.+.+.+..+++....|.|.-|....
T Consensus 97 lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 97 LPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred CCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 23333222 1221 1 13333 34578999999876542 2 12234567888999999999999999999999873
Q ss_pred -CCeeeEE------------eeCCCcceeeEEEEecCCCeeEE
Q 039044 160 -PQTEFKR------------INSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 160 -~~~~~~~------------~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
.+.+-.. .....+....++.|+|+|..+..
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 1111110 11123456789999999877653
No 340
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.23 E-value=0.00032 Score=53.86 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=91.5
Q ss_pred eeeEEEcCCCCEEEEee------CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC--------
Q 039044 3 VSSLCFSPKANILVATS------WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD-------- 68 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------- 68 (194)
+.+.+++|+|+.++... .|..-.||-...+.. . .....+ .....-.|+|+|+.+.+....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---A-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---c-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 56788999998877655 244444554433321 1 111122 237788999998877766432
Q ss_pred ----CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEE---EeCCCCCc-e---eEEe----cCCeE
Q 039044 69 ----KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY---WDTRQPNP-V---HTQQ----LPDRC 133 (194)
Q Consensus 69 ----~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v---wd~~~~~~-~---~~~~----~~~~~ 133 (194)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|.+ -....++. + ..+. .....
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 233333443333222 2356799999999999988776 577776 33333431 1 1111 11245
Q ss_pred EEEecCCCEEEEEcCCCcEEEE--ECCCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 134 YALTVRYPLMVVGTADRNLVVF--NLQNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 134 ~~~~~~~~~l~~~~~dg~v~~~--d~~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+.|..++.. +++..++...+| ++...... .........++..++-+|+
T Consensus 502 l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 502 LDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred ceEecCCEE-EEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc
Confidence 777777774 455554444444 44433221 1011112455677776663
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.20 E-value=0.00024 Score=41.65 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=67.0
Q ss_pred eeeEEEcC-C--C-CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCC
Q 039044 3 VSSLCFSP-K--A-NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLS 78 (194)
Q Consensus 3 v~~~~~~p-~--~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 78 (194)
|+++++.. + | +.|++|+.|..||+|+-+.- .... .-...++++.-... ..|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-------~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-------VAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-------EEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeC--
Confidence 67777765 3 2 68999999999999985532 1222 23456777776655 67899999999999985
Q ss_pred CCceEEeccCCCcEEEEEecC---CC-CEEEEeeCCCeEE
Q 039044 79 GGQPVTVAMHDAPIKEVAWIP---EM-NLLATGSWDKTLK 114 (194)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~v~ 114 (194)
...+...+ .+..+.++++.. +| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33444444 234466766654 23 2577787788764
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.20 E-value=0.00083 Score=47.94 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=85.3
Q ss_pred CCEEEEeeC----------CCeEEEEecccC-CcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC
Q 039044 12 ANILVATSW----------DNQVRCWEISRG-GTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 12 ~~~l~~~~~----------d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 80 (194)
.++|++|+. .|.|.++++... ...............++|++++-. ++. |+.+ .++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcc
Confidence 467777754 288999999884 110011112223457889888877 444 4444 35889999998877
Q ss_pred ceEEe--ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC-CCceeEEe---cC--CeEEEEecCCCEEEEEcCCCcE
Q 039044 81 QPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ-PNPVHTQQ---LP--DRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~---~~--~~~~~~~~~~~~l~~~~~dg~v 152 (194)
.+... ......+.++... +++++.|.....+.++..+. ...+..+. .+ ..++.+-++++.++.+..+|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 33222 2233466666654 55899998888888775543 22222221 12 2455566566799999999999
Q ss_pred EEEECC
Q 039044 153 VVFNLQ 158 (194)
Q Consensus 153 ~~~d~~ 158 (194)
.++...
T Consensus 197 ~~l~~~ 202 (321)
T PF03178_consen 197 FVLRYN 202 (321)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 999876
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.19 E-value=0.00031 Score=51.59 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=86.2
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCC-C
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-A 90 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~ 90 (194)
+..++.++.+|.+..+|..+++..-. ... . ....+. ..+..++.++.+|.+..+|..+++.+....... .
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~---~~~-~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWK---REY-G---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEe---ecC-C---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 45667777889999999887753110 111 1 111122 246678888899999999999887755432111 1
Q ss_pred cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEec--CCCEEEEEcCCCcEEEEEC
Q 039044 91 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTV--RYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~v~~~d~ 157 (194)
...+... .+.+++.++.+|.+...|..+++.+...+.....+.-+| .+..|+.++.+|.|+.+++
T Consensus 327 ~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 1122222 245677888999999999999998877665322111122 3568899999999988765
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.18 E-value=0.0014 Score=49.65 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=77.9
Q ss_pred eEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEe------------------eCCCeEEEEeCCCCC
Q 039044 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATG------------------SWDKTLKYWDTRQPN 122 (194)
Q Consensus 61 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~v~vwd~~~~~ 122 (194)
.++.++.+|.+...|.++|+.+...... ...++..| ..+..+ ..+|.+.-.|..+++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 6788889999999999999987765321 11233333 222221 236788889999988
Q ss_pred ceeEEecC---------Ce--EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 123 PVHTQQLP---------DR--CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 123 ~~~~~~~~---------~~--~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.+-+.... .. .-.....+..++.++.||.++.+|.++++....... +......-+.+..+|+.++...
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence 77665543 11 112223567899999999999999999987655332 2222222234445665555543
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00084 Score=51.21 Aligned_cols=133 Identities=8% Similarity=-0.000 Sum_probs=80.7
Q ss_pred EecCCCeEEE-ecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee-------------------------
Q 039044 55 WKDDGTTVFS-GGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS------------------------- 108 (194)
Q Consensus 55 ~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------------- 108 (194)
+.|||+.+.. .-..+.+.+.|.++.+....+... .....++++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4556654432 233466777787765554444322 2345667777777776664
Q ss_pred ---------------CCCeEEEEeCCC-----CCceeEEecC--CeEEEEecCCCEEEEEcC-CCcEEEEECCCCCeee-
Q 039044 109 ---------------WDKTLKYWDTRQ-----PNPVHTQQLP--DRCYALTVRYPLMVVGTA-DRNLVVFNLQNPQTEF- 164 (194)
Q Consensus 109 ---------------~d~~v~vwd~~~-----~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~- 164 (194)
.++.|.+.|.++ .+.+..+..+ ...+.++|||+++++++. +.+|.|+|+.+.+..+
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 134578888877 3445555443 357899999999877665 8899999998855311
Q ss_pred --------EEeeCCCcceeeEEEEecCCCeeE
Q 039044 165 --------KRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 165 --------~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
..-...........+|.++|..+.
T Consensus 359 ~~~~~~~~vvaevevGlGPLHTaFDg~G~ayt 390 (635)
T PRK02888 359 GKIKPRDAVVAEPELGLGPLHTAFDGRGNAYT 390 (635)
T ss_pred ccCCccceEEEeeccCCCcceEEECCCCCEEE
Confidence 011111223346778888876443
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.16 E-value=0.0003 Score=41.20 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=64.9
Q ss_pred eeEEEEec---CC-CeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee
Q 039044 50 VLCSTWKD---DG-TTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH 125 (194)
Q Consensus 50 i~~~~~~~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~ 125 (194)
|++|++.. +| +.|++|+.|..|++|+-. +.+.++. ....|.+++-... ..|+.+..+|+|-+|+-.....-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence 45666654 33 589999999999999843 5566665 3456777776655 678889999999999864333222
Q ss_pred EEecCCeEEEE-ecC--C-CEEEEEcCCCcEE
Q 039044 126 TQQLPDRCYAL-TVR--Y-PLMVVGTADRNLV 153 (194)
Q Consensus 126 ~~~~~~~~~~~-~~~--~-~~l~~~~~dg~v~ 153 (194)
+-+....++.+ ..+ | +.|++|=.+|.|-
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22233333332 222 2 3688888888764
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.14 E-value=0.00098 Score=46.39 Aligned_cols=143 Identities=14% Similarity=0.075 Sum_probs=90.8
Q ss_pred CCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEE-----
Q 039044 10 PKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT----- 84 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----- 84 (194)
..++.|+.|+.+| +.+++..... ......+..+|..+...|+-+.+++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~------~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS------KPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc------cceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999998 8899983221 111122333499999999887777665 59999999875443321
Q ss_pred ---------eccCCCcEEEEE--ecCCCCEEEEeeCCCeEEEEeCCCC-----CceeEEecCCeEEEEecCCCEEEEEcC
Q 039044 85 ---------VAMHDAPIKEVA--WIPEMNLLATGSWDKTLKYWDTRQP-----NPVHTQQLPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 85 ---------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (194)
.......+...+ -...+...+.+...+.|.+|..... +..+++..+.....+...++.++.|..
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~ 156 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTS 156 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeC
Confidence 011223344444 1123444444555679998877653 456777777666555555888888886
Q ss_pred CCcEEEEECCCCC
Q 039044 149 DRNLVVFNLQNPQ 161 (194)
Q Consensus 149 dg~v~~~d~~~~~ 161 (194)
++ ..+.|+.++.
T Consensus 157 ~~-f~~idl~~~~ 168 (275)
T PF00780_consen 157 KG-FYLIDLNTGS 168 (275)
T ss_pred Cc-eEEEecCCCC
Confidence 55 8888988654
No 348
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.14 E-value=0.00068 Score=49.80 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=86.3
Q ss_pred EEEEeeCCCeEEEEecccCCcccccccccccC-CC-CCeeEEEEec--CCCeEEEecCCCeEEEEecCCCCceEEeccCC
Q 039044 14 ILVATSWDNQVRCWEISRGGTGVASVPKASIS-HD-HPVLCSTWKD--DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD 89 (194)
Q Consensus 14 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 89 (194)
.++.++.+|.+..+|..+++..-........+ +. .....+.-+| .+..++.++.+|.+..+|..+++.+.....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-- 284 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-- 284 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--
Confidence 46666778888888877664311000000000 00 0011111122 245677777899999999999987655431
Q ss_pred CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec-CC---eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 90 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL-PD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
.....+.. .+..++.++.++.+..+|..+++.+-.... .. ....+ .+..++.++.+|.++++|..+++....
T Consensus 285 ~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 285 GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 11112222 456777788899999999998876543321 11 11111 356788899999999999999875443
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.12 E-value=0.00073 Score=52.00 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=83.9
Q ss_pred CCeeEEEEecCCCeEEEec------CCC--eEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC---------
Q 039044 48 HPVLCSTWKDDGTTVFSGG------CDK--QVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD--------- 110 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 110 (194)
..+...+++|+|+.++... .|. .+.+++. +.....+.. ....+.-.|+|+|..+++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999877654 243 4555554 222233322 2237888999998877776532
Q ss_pred ---CeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEE---EECCCCCeee---EEeeCCCcceeeEEEEe
Q 039044 111 ---KTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVV---FNLQNPQTEF---KRINSPLKYQTRCVAAF 181 (194)
Q Consensus 111 ---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~---~d~~~~~~~~---~~~~~~~~~~v~~i~~~ 181 (194)
+.+.+.++..++....+......+.|+|||..++... +|.|++ -....+.... ..+.......+.++.|.
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 2344445554443334455678999999999888766 467777 4433343111 11222334446889999
Q ss_pred cCCCeeE
Q 039044 182 PDQQGFL 188 (194)
Q Consensus 182 p~~~~l~ 188 (194)
+++..++
T Consensus 506 ~~~~L~V 512 (591)
T PRK13616 506 TGDSLVV 512 (591)
T ss_pred cCCEEEE
Confidence 9998654
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.0012 Score=44.66 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC---eEEE
Q 039044 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD---RCYA 135 (194)
Q Consensus 59 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---~~~~ 135 (194)
..+++.|+..+.+.--|..+|+...+-. -...+.+-+.- -|++++.|...|.+++.+..+++....+.... ....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 3578899999999999999998766432 22333332222 46789999999999999999998776655432 2456
Q ss_pred EecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 136 LTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 136 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
+.+++..+..|+.|++.+..|.++....++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEe
Confidence 788999999999999999999998765554
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=5.5e-05 Score=57.21 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=84.5
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE-EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce-
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV-TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV- 124 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~- 124 (194)
...+.--+++..+++++.|+.-|.+++|+-..+.... ...+....+..+..+++..+++.|+..|.|.++.+....+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555667778999999999999999965554322 22234456667778888889999999999999988764322
Q ss_pred --------eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 125 --------HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 125 --------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+++...+++++|++++..+++|...|+|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11233457899999999999999999999988876
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.06 E-value=0.00011 Score=57.54 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=72.6
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcE
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPI 92 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v 92 (194)
...+.|-.+..+..||.+-...................+|++-..+| +||.|+.+|.||+||--..+....+.+-..+|
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 34567777888999998865421111111122345667888877766 78999999999999943333333456668899
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeC
Q 039044 93 KEVAWIPEMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 93 ~~~~~~~~~~~l~~~~~d~~v~vwd~ 118 (194)
..|..+.||++++..+ +..|.+++.
T Consensus 622 ~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999987665 677777775
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=3.9e-05 Score=60.67 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=73.3
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCC
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA 90 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 90 (194)
.+..++.|+..|.+...|+...-. ....-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 345688888889998888876421 1223334568999999999999999999999999999999999888877666
Q ss_pred cEEEEE---ecCCCCEEEEeeCCCe
Q 039044 91 PIKEVA---WIPEMNLLATGSWDKT 112 (194)
Q Consensus 91 ~v~~~~---~~~~~~~l~~~~~d~~ 112 (194)
+.+.+- +..++..++++...|.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc
Confidence 655443 3445556777766665
No 354
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.002 Score=50.33 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=88.3
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
++.+++.+.+-..+|+|-.+|.|..+.-+-.... ............+|+.+++..+++.++-...-..|.+|.+....+
T Consensus 127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p 205 (933)
T KOG2114|consen 127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP 205 (933)
T ss_pred cceEEEEEccccEEEEEecCcEEEEEcCcchhcc-ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence 5678899988889999999999998864321110 011222334567999999999888733333345699999885442
Q ss_pred -eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec
Q 039044 82 -PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL 129 (194)
Q Consensus 82 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~ 129 (194)
...+..|...++|-.+++....+++++ +..+.+||....++...+..
T Consensus 206 ~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 206 SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecC
Confidence 344777888999999988655455554 67899999887777666663
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.01 E-value=0.00076 Score=46.94 Aligned_cols=127 Identities=18% Similarity=0.273 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee-----------
Q 039044 57 DDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH----------- 125 (194)
Q Consensus 57 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~----------- 125 (194)
..++.|+.|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3577899998888 9999984333333332 334499999999877777665 5999999987644332
Q ss_pred ----EEecCCeEEEEe----cCCCEEEEEcCCCcEEEEECCCCC----eeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 126 ----TQQLPDRCYALT----VRYPLMVVGTADRNLVVFNLQNPQ----TEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 126 ----~~~~~~~~~~~~----~~~~~l~~~~~dg~v~~~d~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.......+..+. ..+...+.......|.+|...... ...+.+. ....+.+++|. ++.+++|
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEE
Confidence 111111233333 233444444445689888877642 2233332 44678899998 5566655
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.00012 Score=53.98 Aligned_cols=134 Identities=18% Similarity=0.231 Sum_probs=91.1
Q ss_pred EecCCCeEE-EecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCC-------EEEEeeCCCeEEEEeCCCCCc--e
Q 039044 55 WKDDGTTVF-SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMN-------LLATGSWDKTLKYWDTRQPNP--V 124 (194)
Q Consensus 55 ~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~vwd~~~~~~--~ 124 (194)
...+.++|+ ++.....++-.|++.|+.+.++.-+.. |+-+.+.|+.+ .-+.|-.++.|.-||+|-... +
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334445444 555667789999999999999987766 77777777532 223455688999999984322 1
Q ss_pred eEEec-----CC--eEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 125 HTQQL-----PD--RCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 125 ~~~~~-----~~--~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
...+. .. .|.+-. ..-++++|+.+|.|++||. .+. ..+....+...+|..|..+.+|++++....
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 11111 11 233333 3348999999999999997 333 244555678889999999999999887654
No 357
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=0.0018 Score=43.93 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=88.3
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCc
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP 91 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 91 (194)
..+++.|+..+.+.--|..+++. .....-..++.+-+.- -|++++.|..+|.+++.+.++|+....+.....-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~------~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL------IWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE------EeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 46778888888888888777652 1111122333333322 4678999999999999999999888776533222
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe---EEEEecCCCEEEEEcCCCcE
Q 039044 92 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 92 v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~dg~v 152 (194)
-......+++..+..++.|++.+..|.++...+.+.+-... ..++.+-...|+.+...|.+
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 22344567899999999999999999999888877654432 23445533344444444443
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=1.7e-05 Score=36.64 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=29.4
Q ss_pred ccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 43 SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 43 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
...|...+.++.|.++++.+++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346778899999999999999999999999996
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=7.8e-05 Score=49.08 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEE-EEecCCCeEEEecCCCeEEEEecCCCCceEEeccCC-
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS-TWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD- 89 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~- 89 (194)
+..+++|+.+|.|.+|+.+.... .......-..+|.++ .-..++.+..++..+|.|+.|++.-.+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccch----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 46789999999999999874332 111111122223222 223355688999999999999998777666555666
Q ss_pred CcEEEEEecCCCCEEEEe--eCCCeEEEEeCCC
Q 039044 90 APIKEVAWIPEMNLLATG--SWDKTLKYWDTRQ 120 (194)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~--~~d~~v~vwd~~~ 120 (194)
.++........++.+..+ |.|..++.|++..
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444444444455555555 5566666666553
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.91 E-value=5.1e-05 Score=37.32 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=27.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEeccc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISR 31 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~ 31 (194)
.|.+++|+|..++||.|+.+|.|.+|.++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 688999999999999999999999999843
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.83 E-value=0.0073 Score=45.81 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccc-cCCCCCee--EEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccC
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKAS-ISHDHPVL--CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMH 88 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~~i~--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 88 (194)
+..++.++.++.+.-.|..+++..-....... ......+. .+... ++..++.++.++.|.-+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45667777789999999887753111100000 00000110 11111 2267888889999999999999988776533
Q ss_pred CCc--EEEEEecC--CCCEEEEee---------CCCeEEEEeCCCCCceeEEecCC------------------------
Q 039044 89 DAP--IKEVAWIP--EMNLLATGS---------WDKTLKYWDTRQPNPVHTQQLPD------------------------ 131 (194)
Q Consensus 89 ~~~--v~~~~~~~--~~~~l~~~~---------~d~~v~vwd~~~~~~~~~~~~~~------------------------ 131 (194)
... -..+.-+| .+..++.++ .++.+.-+|..+++.+-..+...
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 221 01122222 123444443 36789999999998776554311
Q ss_pred eEEEEecCCCEEEEEcCCC------------------cEEEEECCCCCeeeEEe
Q 039044 132 RCYALTVRYPLMVVGTADR------------------NLVVFNLQNPQTEFKRI 167 (194)
Q Consensus 132 ~~~~~~~~~~~l~~~~~dg------------------~v~~~d~~~~~~~~~~~ 167 (194)
...++.+.+..++.++.++ .|.-+|+.+++......
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 1234455567788887665 69999999988766543
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.83 E-value=0.0051 Score=43.97 Aligned_cols=119 Identities=10% Similarity=0.132 Sum_probs=75.0
Q ss_pred CeEEEEecCCC----CceEEe--ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeE--EecCCeEEEEecC
Q 039044 69 KQVKMWPLLSG----GQPVTV--AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHT--QQLPDRCYALTVR 139 (194)
Q Consensus 69 ~~i~~~d~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~--~~~~~~~~~~~~~ 139 (194)
|.|.++++... ..+..+ ...+++|++++-. ++. |+.+. .+.|.+|++...+ .... ...+....++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999884 122221 3357889998866 444 44433 5899999998877 4433 3344567777777
Q ss_pred CCEEEEEcCCCcEEEEECCCCCeeeEE-eeCCCcceeeEEEEecCCCeeEEE
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQTEFKR-INSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+++++.|.....+.++..+.....+.. -.......+.++.|-++++.++++
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 889999999888888755442221222 223345668888888777655544
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.0032 Score=43.33 Aligned_cols=140 Identities=14% Similarity=0.186 Sum_probs=88.2
Q ss_pred eeEEEcCC-CCEEEEeeCCCe-EEEEecccCCcccccccccccCCC--CCeeEEEEecCCCeEEEecCC-----CeEEEE
Q 039044 4 SSLCFSPK-ANILVATSWDNQ-VRCWEISRGGTGVASVPKASISHD--HPVLCSTWKDDGTTVFSGGCD-----KQVKMW 74 (194)
Q Consensus 4 ~~~~~~p~-~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----~~i~~~ 74 (194)
..++++|. ..-++.+-.-|+ ..++|...... +......+ .-.---.|+|||.+|++.-.| |.|-||
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~-----pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQE-----PVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcC-----cEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 45777775 345555655554 55777766543 11111111 111123589999999987544 779999
Q ss_pred ecCCC-CceEEeccCCCcEEEEEecCCCCEEEEeeC------------------CCeEEEEeCCCCCceeEEecC-----
Q 039044 75 PLLSG-GQPVTVAMHDAPIKEVAWIPEMNLLATGSW------------------DKTLKYWDTRQPNPVHTQQLP----- 130 (194)
Q Consensus 75 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~v~vwd~~~~~~~~~~~~~----- 130 (194)
|.+.+ +.+-++..|.-....+.|.+||+.++.+.. .-++.+.|..+++.+.++..+
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 98854 345577888878889999999999887642 113556666667666555443
Q ss_pred --CeEEEEecCCCEEEEEcC
Q 039044 131 --DRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 131 --~~~~~~~~~~~~l~~~~~ 148 (194)
.+.++..+++...+.+-.
T Consensus 226 lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cceeeeeeCCCCcEEEEEEe
Confidence 456777778776555543
No 364
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.77 E-value=0.0029 Score=47.72 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=87.8
Q ss_pred CCCCCeeEEEEecCCCeEE-Eec--CCCeEEEEecCCCCceEEeccCCCcEEEEEecCC----CCEEEEeeCCCeEEEEe
Q 039044 45 SHDHPVLCSTWKDDGTTVF-SGG--CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPE----MNLLATGSWDKTLKYWD 117 (194)
Q Consensus 45 ~~~~~i~~~~~~~~~~~l~-~~~--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~v~vwd 117 (194)
..-.++..++|. ||+.++ |.- .+|.++.=| . ..-+.-..|..+.|.|- ..-+++.-..+.|.||.
T Consensus 17 qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 17 QAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---S----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hhhccccceEec-CCCEEEEEeeeeeCCccccCC---c----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 344678899998 565544 321 222222111 1 11233456899999984 33566667789999998
Q ss_pred CCC-----CCceeEE--ec------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 118 TRQ-----PNPVHTQ--QL------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 118 ~~~-----~~~~~~~--~~------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
+.. .+.+... +. -.....|+|....|+.-.....=.+++.+......+.-. ...+.|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence 752 2322221 11 224677899988888877776667778776654444333 456789999999999
Q ss_pred CeeEEEE
Q 039044 185 QGFLVCI 191 (194)
Q Consensus 185 ~~l~~~~ 191 (194)
+.|+++.
T Consensus 168 ~RLVVAv 174 (671)
T PF15390_consen 168 QRLVVAV 174 (671)
T ss_pred CEEEEEe
Confidence 9999875
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.0083 Score=44.39 Aligned_cols=170 Identities=10% Similarity=0.112 Sum_probs=82.7
Q ss_pred EEEcCCCCEEEEeeCC-----------CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEE
Q 039044 6 LCFSPKANILVATSWD-----------NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMW 74 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d-----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~ 74 (194)
++.+|.|..+|....+ ..|++|+...... ....... +.+.++.|+.+. .|+.-..||.+++|
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll-----~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLL-----SSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEe-----EEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEE
Confidence 4555655555555433 1477777654421 1111122 789999998754 55666789999999
Q ss_pred ecCCCC------ceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEe-CCCCCceeEE-ecCC------------eEE
Q 039044 75 PLLSGG------QPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TRQPNPVHTQ-QLPD------------RCY 134 (194)
Q Consensus 75 d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd-~~~~~~~~~~-~~~~------------~~~ 134 (194)
|+.... .+....-....+....+..+|-.+++ .++.+.+.. .......... ..+. ...
T Consensus 107 ~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~ 184 (410)
T PF04841_consen 107 DLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIP 184 (410)
T ss_pred eCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccce
Confidence 986333 01111111122222233335533433 244444332 2211111110 1110 012
Q ss_pred EEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 135 ALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 135 ~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.++.+....+....++.+.+.+-...+. + ...+++..+++||+|++++.-
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i--~~~~~i~~iavSpng~~iAl~ 234 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ----I--DSDGPIIKIAVSPNGKFIALF 234 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc----c--cCCCCeEEEEECCCCCEEEEE
Confidence 2333444444445555565444332211 1 124578999999999988764
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00048 Score=54.89 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCeEEEEecCCCCce-EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec---CCeE
Q 039044 58 DGTTVFSGGCDKQVKMWPLLSGGQP-VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL---PDRC 133 (194)
Q Consensus 58 ~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---~~~~ 133 (194)
.+-.++.|+..|.+...|+...-.. ..=..-..+|++++|+.+|..++.|-.+|.|.+||+..+++++.+.. +...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999999998663221 11122357899999999999999999999999999999888776653 2222
Q ss_pred ---EEEecCCCEEEEEcCCCc
Q 039044 134 ---YALTVRYPLMVVGTADRN 151 (194)
Q Consensus 134 ---~~~~~~~~~l~~~~~dg~ 151 (194)
+.+..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 233334456777777775
No 367
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.73 E-value=0.00018 Score=35.37 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
..+|.+++|+|...+|+.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456899999999999999999999999998 4443
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.011 Score=43.40 Aligned_cols=144 Identities=12% Similarity=0.017 Sum_probs=99.2
Q ss_pred CCeeEEEEecCCCeEE-EecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeC---CCeEEEEeCCCCCc
Q 039044 48 HPVLCSTWKDDGTTVF-SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW---DKTLKYWDTRQPNP 123 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~~ 123 (194)
..-..++.++.++.++ +...++.|.+.|............-. ....++++|+++.+..+.. ++.+.+.|..+.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 3445778888887554 44456899999977766655543222 6678999999987776655 68899999988887
Q ss_pred eeEEecC--CeEEEEecCCCEEEEEc-CCCcEEEEECCCCCeeeEE--eeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 124 VHTQQLP--DRCYALTVRYPLMVVGT-ADRNLVVFNLQNPQTEFKR--INSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 124 ~~~~~~~--~~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
+.+.... ...++++|+++.++... .++.|.++|.......... ...........+.++|+|..+.+...
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 7775442 36789999999766665 6888999997765422100 01122234578899999997766543
No 369
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.012 Score=43.50 Aligned_cols=177 Identities=10% Similarity=0.042 Sum_probs=88.9
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccccccccc---ccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKA---SISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
+.|-++.|..+. .|+....||.+++||+.... ....... ..-....+....+..+|-.+++ .++.+.+.+-.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCc
Confidence 357788998754 55566789999999986332 0001111 1111222223333334533333 34444433321
Q ss_pred CCC-ceEEec----------cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEE
Q 039044 78 SGG-QPVTVA----------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVG 146 (194)
Q Consensus 78 ~~~-~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (194)
... ..+.+. .+.....-..++.+....+....++.+.+.+-...+.+. ...+...+++||++++++.-
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~-~~~~i~~iavSpng~~iAl~ 234 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQID-SDGPIIKIAVSPNGKFIALF 234 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccccc-CCCCeEEEEECCCCCEEEEE
Confidence 111 111110 011000012334444455555555666655433322211 12456789999999999999
Q ss_pred cCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCC
Q 039044 147 TADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQ 184 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 184 (194)
..+|.+.+.+..-.+ ...............+.|.-+.
T Consensus 235 t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 235 TDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCC
Confidence 999999888754333 3333333334456677776654
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.63 E-value=0.013 Score=43.08 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=77.6
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCccc------c-c-------------------------------ccccc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGV------A-S-------------------------------VPKAS 43 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~------~-~-------------------------------~~~~~ 43 (194)
.|+.+.|.++...|++|...|.|-+|......... . . ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999999876432110 0 0 00011
Q ss_pred cCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEE--ecc------CCCcEEEEEecC-----CC---CEEEEe
Q 039044 44 ISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVT--VAM------HDAPIKEVAWIP-----EM---NLLATG 107 (194)
Q Consensus 44 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~---~~l~~~ 107 (194)
....++|++++.+ |=-+++.|..+|.+.|.|++....+.. +.. ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2235788999987 555899999999999999987766554 222 234678888863 33 468889
Q ss_pred eCCCeEEEEeCC
Q 039044 108 SWDKTLKYWDTR 119 (194)
Q Consensus 108 ~~d~~v~vwd~~ 119 (194)
...|.+.+|.+.
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 999999999875
No 371
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.63 E-value=0.0087 Score=40.97 Aligned_cols=150 Identities=12% Similarity=0.126 Sum_probs=81.0
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccc------cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecC
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASV------PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLL 77 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~ 77 (194)
-.|++..++.++++--+++.+.++++.......... ......++..+-.++|+|.++.|+.+-+.....+|.++
T Consensus 68 EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 68 EGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 456776666666665568899999985432211000 01112355678999999998888888888777788776
Q ss_pred C---CCceEEe--------ccCCCcEEEEEecCC-CCEEEEeeCCCeEEEEeCCCCCceeEEecC------------CeE
Q 039044 78 S---GGQPVTV--------AMHDAPIKEVAWIPE-MNLLATGSWDKTLKYWDTRQPNPVHTQQLP------------DRC 133 (194)
Q Consensus 78 ~---~~~~~~~--------~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~------------~~~ 133 (194)
. ...+... ......+.+++++|. +++++-+..+..|..+| .+++++..+... ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence 4 2222111 123345789999994 56677777788999999 667766555432 247
Q ss_pred EEEecCCCEEEEEcCCCcEEEE
Q 039044 134 YALTVRYPLMVVGTADRNLVVF 155 (194)
Q Consensus 134 ~~~~~~~~~l~~~~~dg~v~~~ 155 (194)
+++.++|+. +..++-+..++|
T Consensus 227 Ia~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 227 IAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp EEE-TT--E-EEEETTTEEEEE
T ss_pred EEECCCCCE-EEEcCCceEEEe
Confidence 888888854 444454444443
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.58 E-value=0.014 Score=42.29 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=75.6
Q ss_pred CCCCeeEEEEecCCCeEEEe--cCCC---eEEEEecCCCCceEEecc-CCC---cEEEEEec-CCCC-EEEEeeCCCe--
Q 039044 46 HDHPVLCSTWKDDGTTVFSG--GCDK---QVKMWPLLSGGQPVTVAM-HDA---PIKEVAWI-PEMN-LLATGSWDKT-- 112 (194)
Q Consensus 46 ~~~~i~~~~~~~~~~~l~~~--~~d~---~i~~~d~~~~~~~~~~~~-~~~---~v~~~~~~-~~~~-~l~~~~~d~~-- 112 (194)
....+..+.|.++++.|+.. .++. .+.+.|..++........ ... .-....|. +++. ++.....+|.
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 34557888999998844433 2222 466778777665433321 112 22345554 5544 4555556775
Q ss_pred EEEEeCCCCCceeEEe-c--CC-eEEEEecCCCEEE-EEcCC----CcEEEEECC-CCCeeeEEeeCCCcceeeEEEEec
Q 039044 113 LKYWDTRQPNPVHTQQ-L--PD-RCYALTVRYPLMV-VGTAD----RNLVVFNLQ-NPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 113 v~vwd~~~~~~~~~~~-~--~~-~~~~~~~~~~~l~-~~~~d----g~v~~~d~~-~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
|.+++...+... .+. + .+ ..+.++++++.++ ++..+ ..|+..++. .+. .+.+.... ..-..+.|||
T Consensus 262 ly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--~~~LT~~~-~~~~~~~~Sp 337 (353)
T PF00930_consen 262 LYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--PKCLTCED-GDHYSASFSP 337 (353)
T ss_dssp EEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--EEESSTTS-STTEEEEE-T
T ss_pred EEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--eEeccCCC-CCceEEEECC
Confidence 445555544422 222 1 22 3567788776554 45542 245555666 333 33333221 1115999999
Q ss_pred CCCeeEEEEe
Q 039044 183 DQQGFLVCIH 192 (194)
Q Consensus 183 ~~~~l~~~~~ 192 (194)
++++++....
T Consensus 338 dg~y~v~~~s 347 (353)
T PF00930_consen 338 DGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999887654
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.55 E-value=0.014 Score=41.49 Aligned_cols=132 Identities=11% Similarity=0.083 Sum_probs=86.7
Q ss_pred CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec----------CCCeEEEEecCCCCceEEe--ccC-
Q 039044 22 NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG----------CDKQVKMWPLLSGGQPVTV--AMH- 88 (194)
Q Consensus 22 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~--~~~- 88 (194)
+.+.++|.+.++. .... ..+..-.+..+|+++.+++++ +.-.|.+||..+.....++ ..-
T Consensus 17 ~rv~viD~d~~k~-----lGmi--~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKL-----LGMI--DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEE-----EEEE--EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcE-----EEEe--ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 4678888766531 1111 122233466789999888643 3456999999988766544 221
Q ss_pred C----CcEEEEEecCCCCEEEEeeC--CCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 89 D----APIKEVAWIPEMNLLATGSW--DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 89 ~----~~v~~~~~~~~~~~l~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
. .....++++.++++++.... ..+|.|.|+...+.+.++..+.-...+-...+.+.+-+.||.+.-..+...
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETST
T ss_pred hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCC
Confidence 1 12244678889988777643 468999999999999988888755555444467888888999988888743
No 374
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.51 E-value=0.016 Score=40.94 Aligned_cols=145 Identities=11% Similarity=0.080 Sum_probs=75.7
Q ss_pred CCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEe-CCCCCc
Q 039044 45 SHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWD-TRQPNP 123 (194)
Q Consensus 45 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd-~~~~~~ 123 (194)
.....+..+.-+++|++++++.......-||--...-...-+.....|..|.|.|++.+.+.+ ..|.|+.=+ ....+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 445678888889999999888777777778753322222334456889999999998765544 788888877 222222
Q ss_pred eeEEec-------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeC--CCcceeeEEEEecCCCeeEEEEee
Q 039044 124 VHTQQL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINS--PLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 124 ~~~~~~-------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
-..... ....+++.++.+..++|+ .|.+. .....++ ..++... ........+.|.++.+.++.|-.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGk-tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGK-TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTS-S-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCc-cceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 111111 123556776766666555 55333 3444443 3444432 345568899999888898887543
No 375
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.017 Score=39.98 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred EEcCCCCEEEEeeCC-----CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecC--------------
Q 039044 7 CFSPKANILVATSWD-----NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGC-------------- 67 (194)
Q Consensus 7 ~~~p~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------- 67 (194)
.|+|||++|+..-.| |.|-+||....- ........|.-....+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f----qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN 195 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF----QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN 195 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc----ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence 588999988876443 678899988553 233445566667788999999999887632
Q ss_pred ----CCeEEEEecCCCCceEE--ec--cCCCcEEEEEecCCCCEEEEeeCCCe-----EEEEeCCCCCceeEEecCC---
Q 039044 68 ----DKQVKMWPLLSGGQPVT--VA--MHDAPIKEVAWIPEMNLLATGSWDKT-----LKYWDTRQPNPVHTQQLPD--- 131 (194)
Q Consensus 68 ----d~~i~~~d~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~vwd~~~~~~~~~~~~~~--- 131 (194)
.-.+.+.|..+|+.+.+ +. .+...++.++..++|...+.+-..|. -.+=..+.++++.-+..+.
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 11233334344444332 22 34456788888888877665543332 1122223455554444432
Q ss_pred -------eEEEEecCCCEEEEEcCCC-cEEEEECCCCCe
Q 039044 132 -------RCYALTVRYPLMVVGTADR-NLVVFNLQNPQT 162 (194)
Q Consensus 132 -------~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~ 162 (194)
-+++.+.+..+++..+-.| ...+||..++..
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 2566666566666555544 478999998864
No 376
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.44 E-value=0.013 Score=40.33 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=62.3
Q ss_pred cEEEEEecCCCCEEEEee---CCCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCcEEEEE-CCCCCeeeEE
Q 039044 91 PIKEVAWIPEMNLLATGS---WDKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRNLVVFN-LQNPQTEFKR 166 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d-~~~~~~~~~~ 166 (194)
.+.+.+++++++.++... ....+.++...................|++++...+....+...+++. ...+......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999999877665 334566665443222221222345668888877666666666666663 3333322222
Q ss_pred eeCCCc-ceeeEEEEecCCCeeEEEE
Q 039044 167 INSPLK-YQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 167 ~~~~~~-~~v~~i~~~p~~~~l~~~~ 191 (194)
...... ..|..+.+||||..+++-.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEE
Confidence 322222 2899999999999988765
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.021 Score=39.64 Aligned_cols=184 Identities=15% Similarity=0.200 Sum_probs=110.1
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
|.++.|+|+.+.|++......-.++=-.++.. ...++. .+ -...-.+.+..++++.++--+++.+.++.+......
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL--~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPL--TG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecc--cc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 77899999988887777665554543333321 111111 11 223446788888888888888888888887655332
Q ss_pred EE-------e--ccC-CCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-ceeE------------EecCCeEEEEec-
Q 039044 83 VT-------V--AMH-DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-PVHT------------QQLPDRCYALTV- 138 (194)
Q Consensus 83 ~~-------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-~~~~------------~~~~~~~~~~~~- 138 (194)
.. + ..+ +.....++|.|....|+.+-..+-+.||.+.... .+.. +-.....+.+.+
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 21 1 112 5677899999988888888777767777655332 1110 111234556665
Q ss_pred CCCEEEEEcCCCcEEEEECCCCCeeeEEeeCC---Cc---ceeeEEEEecCCCeeEEE
Q 039044 139 RYPLMVVGTADRNLVVFNLQNPQTEFKRINSP---LK---YQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 139 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~---~~---~~v~~i~~~p~~~~l~~~ 190 (194)
.+..++.+.+++.+.-.|+...-.....+..+ .. -+...++..++|...+++
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 44566667778878888876543222222211 11 234678888888877664
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.011 Score=41.81 Aligned_cols=104 Identities=15% Similarity=0.079 Sum_probs=66.5
Q ss_pred eeEEEcCCCCEEEEeeC-CCeEEEEeccc--CCcccccccccccCCCCCeeEEEEecCCCeEEEecCCC-eEEEEecCCC
Q 039044 4 SSLCFSPKANILVATSW-DNQVRCWEISR--GGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK-QVKMWPLLSG 79 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~-d~~i~i~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~ 79 (194)
+.|+|+||++.|+.+.. .+.|.-|++.. ................+..-.++...+|++.+++..+| .|.+|+.+ +
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 57999999977776654 47787787763 11100011112222345556778888888876555554 89999987 8
Q ss_pred CceEEeccCCCcEEEEEecC-CCCEEEEee
Q 039044 80 GQPVTVAMHDAPIKEVAWIP-EMNLLATGS 108 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 108 (194)
+.+..+.-....+++++|-- +.+.|...+
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88887776657788888843 445444443
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.33 E-value=0.035 Score=40.89 Aligned_cols=188 Identities=9% Similarity=0.037 Sum_probs=87.5
Q ss_pred eEEEcCCCCEEEEeeC--C----CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec------------
Q 039044 5 SLCFSPKANILVATSW--D----NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG------------ 66 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~--d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------ 66 (194)
.+..-|+|++++++-. + |-+.++|-++.+..-. -..-.....--..+-|.|..+.++|..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~--We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~ 211 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR--WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFN 211 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE----SB-TT------EEEETTTTEEEE-B---HHHHTT---
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce--eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCC
Confidence 3444578888776532 2 3466666554321000 000111122345667777777777653
Q ss_pred --------CCCeEEEEecCCCCceEEeccCC--CcEEEEEecC--CCCE-EEEeeCCCeEEEEeC-CCCCc----eeEE-
Q 039044 67 --------CDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIP--EMNL-LATGSWDKTLKYWDT-RQPNP----VHTQ- 127 (194)
Q Consensus 67 --------~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~d~~v~vwd~-~~~~~----~~~~- 127 (194)
....+.+||+.+.+.++++.--. ..+..+.|.. +..+ ++.+....+|..|-- ..++. +..+
T Consensus 212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 34679999999999988876432 2355676654 4444 444444556665543 33321 1111
Q ss_pred -------------------ecCCeEEEEecCCCEEEEEcC-CCcEEEEECCCCCeeeEEeeC-----------------C
Q 039044 128 -------------------QLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQNPQTEFKRINS-----------------P 170 (194)
Q Consensus 128 -------------------~~~~~~~~~~~~~~~l~~~~~-dg~v~~~d~~~~~~~~~~~~~-----------------~ 170 (194)
..-.+.+.+|.|.++|...+. .|.|+.||+..+..+...-.. .
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 111256788999999887765 899999999887655333210 1
Q ss_pred CcceeeEEEEecCCCeeEEEEeeC
Q 039044 171 LKYQTRCVAAFPDQQGFLVCIHLF 194 (194)
Q Consensus 171 ~~~~v~~i~~~p~~~~l~~~~~~~ 194 (194)
..+...-+..|-||+.|.+...+|
T Consensus 372 l~GgPqMvqlS~DGkRlYvTnSLy 395 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTNSLY 395 (461)
T ss_dssp --S----EEE-TTSSEEEEE----
T ss_pred cCCCCCeEEEccCCeEEEEEeecc
Confidence 122346788999999998876654
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.30 E-value=0.04 Score=40.92 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=82.6
Q ss_pred eeEEEcCCCCEEEEe-eCC----CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC----------
Q 039044 4 SSLCFSPKANILVAT-SWD----NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD---------- 68 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~-~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 68 (194)
....++|+++++|.+ +.. ..++++|+.++.. ....+.. .....+.|.++++.|+-...+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~----l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF----LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE----EEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC----cCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 467899999988854 333 3599999988742 1111111 112249999998876654322
Q ss_pred -CeEEEEecCCCCce--EEeccCCCc--EEEEEecCCCCEEEEeeC---C-CeEEEEeCCCC----CceeEEec--CCeE
Q 039044 69 -KQVKMWPLLSGGQP--VTVAMHDAP--IKEVAWIPEMNLLATGSW---D-KTLKYWDTRQP----NPVHTQQL--PDRC 133 (194)
Q Consensus 69 -~~i~~~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~v~vwd~~~~----~~~~~~~~--~~~~ 133 (194)
..|+.|.+.++... ..+...... ...+..++++++++.... + ..+.+.|+... .....+.. ....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 23777787665443 334333322 567888999998765432 2 45788888874 12222221 2222
Q ss_pred EEE-ecCCCEEEEEcC---CCcEEEEECCCCC
Q 039044 134 YAL-TVRYPLMVVGTA---DRNLVVFNLQNPQ 161 (194)
Q Consensus 134 ~~~-~~~~~~l~~~~~---dg~v~~~d~~~~~ 161 (194)
..+ ...+.+++.... ++.|.-.++....
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 222 223333333322 4567777887765
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0047 Score=46.01 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=73.3
Q ss_pred eeeEEEcCCCC-------EEEEeeCCCeEEEEecccCCcccccc-cccccCCCCCeeEEEEecCCCeEEEecCCCeEEEE
Q 039044 3 VSSLCFSPKAN-------ILVATSWDNQVRCWEISRGGTGVASV-PKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMW 74 (194)
Q Consensus 3 v~~~~~~p~~~-------~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~ 74 (194)
|+-+.+.|+.+ .-+.|-.|..|.-||.+-........ ............|.+-..+| +|+.|+.+|.|++|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLY 456 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEee
Confidence 34455666532 23456667888889887543211000 01111223445666665555 79999999999999
Q ss_pred ecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 75 PLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 75 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
|--.......+.+-..+|..+..+.+|++++..+ +..+.+.++.
T Consensus 457 dri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 457 DRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred hhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 9633333445677888999999999999987554 6777777654
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.22 E-value=0.04 Score=41.96 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=71.6
Q ss_pred CeeeEEEcCC----CCEEEEeeCCCeEEEEecccCCccccccc-ccccCC----CCCeeEEEEecCCCeEEEecCCCeEE
Q 039044 2 SVSSLCFSPK----ANILVATSWDNQVRCWEISRGGTGVASVP-KASISH----DHPVLCSTWKDDGTTVFSGGCDKQVK 72 (194)
Q Consensus 2 ~v~~~~~~p~----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~ 72 (194)
.|..+.|.|- ...|++......|.+|.+........... ...-.. .---..+.|+|....|+.-.....-.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 5889999994 33455556678999999874322110100 000011 11224678999888777665555445
Q ss_pred EEecCCCCceEEe-ccCCCcEEEEEecCCCCEEEEee-CCCeEEEEeCCC
Q 039044 73 MWPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGS-WDKTLKYWDTRQ 120 (194)
Q Consensus 73 ~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~vwd~~~ 120 (194)
+++++........ -...+.|.|.+|.+||+.|+++- ..-.-++||-..
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5666554433222 23567899999999999877654 333567888554
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.014 Score=47.57 Aligned_cols=144 Identities=14% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCeeEEEEecCCCeEEE--ecCCCeEEEEecCCCCceE-----Eec------cCCCcEEEEEecCCC-CEEEEeeCCCe
Q 039044 47 DHPVLCSTWKDDGTTVFS--GGCDKQVKMWPLLSGGQPV-----TVA------MHDAPIKEVAWIPEM-NLLATGSWDKT 112 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~-----~~~------~~~~~v~~~~~~~~~-~~l~~~~~d~~ 112 (194)
.-++..+...+|+...+. .+.+-.|..||+++-.... -+. .......++.|+|.- ...+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345666667777665443 3344478899987532211 111 123445688899853 34666778999
Q ss_pred EEEEeCCCCCc-eeE--EecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCee-eEEeeCCCcceeeEEEEecCCCeeE
Q 039044 113 LKYWDTRQPNP-VHT--QQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTE-FKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 113 v~vwd~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
|++..+..... +.. +.....+++|+|.|..++.|-..|++.-|...-.... ...........|.+|.|-....+++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 99887764332 222 2345579999999999999999999999876532111 1111111247799999988877776
Q ss_pred EE
Q 039044 189 VC 190 (194)
Q Consensus 189 ~~ 190 (194)
+=
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 53
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.048 Score=38.71 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=85.5
Q ss_pred CCeeEEEEecCCCeEEEecC---------CCeEEEEecC-CCCceEEeccCCCcEEEEEecCCCCEEEEeeC-CCeEEEE
Q 039044 48 HPVLCSTWKDDGTTVFSGGC---------DKQVKMWPLL-SGGQPVTVAMHDAPIKEVAWIPEMNLLATGSW-DKTLKYW 116 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~---------d~~i~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~vw 116 (194)
...+.+...|+|.+.++... ...-.+|-+. .+..++.+..+-..-+.|+|+||++.|..+.. .+.|+-|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 55678888999887776544 1112445444 45555555555666789999999987766644 4788888
Q ss_pred eCCC--CCce-----eEEe---cCCeEEEEecCCCEEEEEcCCC-cEEEEECCCCCeeeEEeeCCCcceeeEEEEe-cCC
Q 039044 117 DTRQ--PNPV-----HTQQ---LPDRCYALTVRYPLMVVGTADR-NLVVFNLQNPQTEFKRINSPLKYQTRCVAAF-PDQ 184 (194)
Q Consensus 117 d~~~--~~~~-----~~~~---~~~~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~-p~~ 184 (194)
++.. +... .... ...-.+++..+|.+-+++..+| .|..|+.. ++. ......+. ..+++++|- |+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l-~~~i~lP~-~~~t~~~FgG~~~ 267 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL-LGEIKLPV-KRPTNPAFGGPDL 267 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE-EEEEECCC-CCCccceEeCCCc
Confidence 7752 1111 1111 1123567777887765555554 89999988 443 33343333 456777774 555
Q ss_pred CeeEEEE
Q 039044 185 QGFLVCI 191 (194)
Q Consensus 185 ~~l~~~~ 191 (194)
+.|.+.+
T Consensus 268 ~~L~iTs 274 (307)
T COG3386 268 NTLYITS 274 (307)
T ss_pred CEEEEEe
Confidence 6665554
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.12 E-value=0.043 Score=37.77 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=77.8
Q ss_pred CCeeEEEEecCCCeEEEecCCC--eEEEEecCCCCceEEecc-CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 48 HPVLCSTWKDDGTTVFSGGCDK--QVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
.-...+.|..++.++-+.+.-| .|+.+|+.+++......- ...--..++...+ +...-.=.++...+||..+-+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEE
Confidence 4456788877888888877776 689999999887654331 2222344554433 33333446889999999999999
Q ss_pred eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCe
Q 039044 125 HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQT 162 (194)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~ 162 (194)
.++..+....-+..+++.|+.......++++|..+.+.
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEEecCCcceEEEcCCCEEEEECCccceEEECCcccce
Confidence 88888877777778888888888888899999887653
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.12 E-value=0.028 Score=39.70 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=72.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.+..+.-+++|++++++.......-|+-.... -.+. .......|..|.|.|++...+.+ +.|.|+.=+.. ..
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~----w~~~-~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~--~~ 217 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTT----WQPH-NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP--DD 217 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-----EEE-E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T--TE
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCcc----ceEE-ccCccceehhceecCCCCEEEEe-CCcEEEEccCC--CC
Confidence 56778888999999998766666677754321 1111 12245789999999998876655 88888877721 11
Q ss_pred eEEec-------cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEec----C--CeEEEEecCCCEEEEEcC
Q 039044 82 PVTVA-------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQL----P--DRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 82 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----~--~~~~~~~~~~~~l~~~~~ 148 (194)
...+. ...-.+.+++|.+++...++++ .|.+. .....++.-+.... + -..+.|.... .-++.+.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~ 294 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQ 294 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-S
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCC-ceEEECC
Confidence 11221 1233478999998877777665 45433 23344443333221 2 2345555443 3444455
Q ss_pred CCcEEE
Q 039044 149 DRNLVV 154 (194)
Q Consensus 149 dg~v~~ 154 (194)
+|.|--
T Consensus 295 ~G~ll~ 300 (302)
T PF14870_consen 295 DGVLLR 300 (302)
T ss_dssp TTEEEE
T ss_pred CcEEEE
Confidence 776543
No 387
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.12 E-value=0.06 Score=39.39 Aligned_cols=137 Identities=9% Similarity=-0.036 Sum_probs=75.4
Q ss_pred CCeeEEEEecCCCeEEEec-----------CCC-eEEEEecCC--CCc--eEEeccCCCcEEEEEecCCCCEEEEeeCCC
Q 039044 48 HPVLCSTWKDDGTTVFSGG-----------CDK-QVKMWPLLS--GGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDK 111 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 111 (194)
.....|+|.++|+++++-. ..+ .|.+++-.. ++. ...+.........+++.+++ .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456789999998777643 223 677776443 222 23333334456889999988 444 44343
Q ss_pred eEEEEeCCCC-----C--ce-eEEec-------CCeEEEEecCCCEEEEEcCC-------------------CcEEEEEC
Q 039044 112 TLKYWDTRQP-----N--PV-HTQQL-------PDRCYALTVRYPLMVVGTAD-------------------RNLVVFNL 157 (194)
Q Consensus 112 ~v~vwd~~~~-----~--~~-~~~~~-------~~~~~~~~~~~~~l~~~~~d-------------------g~v~~~d~ 157 (194)
..++.|.... + .+ ..+.. ....+.+.|+|...++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 1 11 11211 13468889998765544421 34555555
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
.+.+ ......++ .....++|+|+|+.+++
T Consensus 172 dg~~--~e~~a~G~-rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGK--LRVVAHGF-QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCe--EEEEecCc-CCCccceECCCCCEEEE
Confidence 5433 23333333 33578999999988765
No 388
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.074 Score=40.02 Aligned_cols=135 Identities=11% Similarity=0.141 Sum_probs=87.3
Q ss_pred EEecCCCeEE-EecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCC-------CEEEEeeCCCeEEEEeCCCCC-ce
Q 039044 54 TWKDDGTTVF-SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEM-------NLLATGSWDKTLKYWDTRQPN-PV 124 (194)
Q Consensus 54 ~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~d~~v~vwd~~~~~-~~ 124 (194)
....+.++|+ .|.....++-.|++.|+.+.++..|..- -+.|.|.. ..-+.|-.+..|.-.|.|-.. .+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 3344555544 5566677888899999999999877655 47777742 123345557777777876433 22
Q ss_pred eEEec--CCe----EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 125 HTQQL--PDR----CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 125 ~~~~~--~~~----~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
...+. -.. ........-++++++..|-|++||.-... .+....+....|..+..+.+|+++++...
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEeec
Confidence 22111 111 12222345699999999999999965432 23444557788999999999999887654
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.065 Score=38.28 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=89.4
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCee-EEEEecCCCeEEEecCCCeEEEEecCCCCceE--Eecc--
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVL-CSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV--TVAM-- 87 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~-- 87 (194)
+.+.+-+.||.+.-..++............+.....++. .-++...+..++--+.+|.|+--|+....... .+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 567788889999999998654422221122223333332 33455555566667789999999887654321 1110
Q ss_pred --------CCCcEEEEEecCCCCEEEEee---CCC-------eEEEEeCCCCCceeEEec--CCeEEEEecCCC-EEEEE
Q 039044 88 --------HDAPIKEVAWIPEMNLLATGS---WDK-------TLKYWDTRQPNPVHTQQL--PDRCYALTVRYP-LMVVG 146 (194)
Q Consensus 88 --------~~~~v~~~~~~~~~~~l~~~~---~d~-------~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~-~l~~~ 146 (194)
..+.-.-+++++..++|.+-- .++ .|.++|+.+++.+..+.. +..++.++.+.+ .|++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence 122334577777554444321 122 488889999999888775 345688888765 55444
Q ss_pred -cCCCcEEEEECCCCCe
Q 039044 147 -TADRNLVVFNLQNPQT 162 (194)
Q Consensus 147 -~~dg~v~~~d~~~~~~ 162 (194)
..++.+.+||..+++.
T Consensus 308 ~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ETTTTEEEEEETTT--E
T ss_pred cCCCCeEEEEeCcCCcE
Confidence 4578999999999864
No 390
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=97.01 E-value=0.0073 Score=28.87 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred CcEEEEEecCC-C--CEEEEeeCCCeEEEEeCCC
Q 039044 90 APIKEVAWIPE-M--NLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 90 ~~v~~~~~~~~-~--~~l~~~~~d~~v~vwd~~~ 120 (194)
+.+++++|+|+ + .+|+.+-..+.+.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 35788888874 3 4777777788889999885
No 391
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.99 E-value=0.08 Score=38.74 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=74.6
Q ss_pred eeeEEEcCCCCEEEEee-----------CCC-eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCe
Q 039044 3 VSSLCFSPKANILVATS-----------WDN-QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ 70 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~-----------~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 70 (194)
...|+|.++|+++++-. ..+ .|.+++-..+.- .......+...-.....+++.+++ . +.+.....
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-KYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-CcceeEEeecCCCCccceeEecCC-E-EEeCCCeE
Confidence 45789999999877743 223 666665332211 001112222233456789999888 4 44444443
Q ss_pred EEEEecCCC-----CceE---Eecc----CCCcEEEEEecCCCCEEEEeeCC-------------------CeEEEEeCC
Q 039044 71 VKMWPLLSG-----GQPV---TVAM----HDAPIKEVAWIPEMNLLATGSWD-------------------KTLKYWDTR 119 (194)
Q Consensus 71 i~~~d~~~~-----~~~~---~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~v~vwd~~ 119 (194)
.++.|.... +... .+.. +......++|.|+|.+.++.+.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334454321 1111 1221 23457889999999876655521 345555554
Q ss_pred CCCceeEEec---CCeEEEEecCCCEEEEEc
Q 039044 120 QPNPVHTQQL---PDRCYALTVRYPLMVVGT 147 (194)
Q Consensus 120 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 147 (194)
.++. ..+.. ....++|+++++.+++-.
T Consensus 173 g~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 4332 12211 124688888888776544
No 392
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.065 Score=37.37 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=90.1
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce---eE
Q 039044 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV---HT 126 (194)
Q Consensus 50 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~---~~ 126 (194)
+..+.++ +++.+.+..+.-+++.|+.+......+..-+-.-..-.|.-.|++..++..|.-+.+.|+.+.+.. -.
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 4445554 457777778888999999987765544322211223334447889988887888888898765422 22
Q ss_pred EecCCe-EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 127 QQLPDR-CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 127 ~~~~~~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
...+.. .....-.|++-..+..|+-+.+.|+..+..+...-.......+.++..+++..+++..
T Consensus 167 ya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 167 YALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred eccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc
Confidence 222221 1344456888888888889999999987765443333333367888888887777654
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.97 E-value=0.046 Score=42.45 Aligned_cols=92 Identities=21% Similarity=0.447 Sum_probs=63.3
Q ss_pred CCeEEEEecccCCcccccccccccCCCCCeeEEEEe--cCCCeEEEecCCCeEEEEecC-----CC----CceEE--ecc
Q 039044 21 DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK--DDGTTVFSGGCDKQVKMWPLL-----SG----GQPVT--VAM 87 (194)
Q Consensus 21 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~d~~-----~~----~~~~~--~~~ 87 (194)
...+.|||...... .........+.|..+.|. |+++.+++.+..+.|.+|.-. .. ..++. +..
T Consensus 50 ~~~LtIWD~~~~~l----E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 50 RSELTIWDTRSGVL----EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred CCEEEEEEcCCcEE----EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 45689999987642 122222567889999995 588999999999999998642 11 12232 233
Q ss_pred CC-CcEEEEEecCCCCEEEEeeCCCeEEEEeC
Q 039044 88 HD-APIKEVAWIPEMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 88 ~~-~~v~~~~~~~~~~~l~~~~~d~~v~vwd~ 118 (194)
+. .+|.+..|.++|..++.+ .+.+.|+|-
T Consensus 126 ~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 126 HTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 43 678999999998766654 468888874
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.96 E-value=0.035 Score=37.36 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=63.7
Q ss_pred eeEEEcCCCCEE-EEeeCCCeEEEEec--ccCCcccccccccc---cCC-CCCeeEEEEecCCCeEEEecCCCeEEEEec
Q 039044 4 SSLCFSPKANIL-VATSWDNQVRCWEI--SRGGTGVASVPKAS---ISH-DHPVLCSTWKDDGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 4 ~~~~~~p~~~~l-~~~~~d~~i~i~~~--~~~~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~ 76 (194)
+.++|+.+.+.+ ++-+.+-+|.-||. .++..........+ ... ....-.++...+|++.++.-..++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 467888776554 45556777877884 34322111111111 111 111234556778889999989999999999
Q ss_pred CCCCceEEeccCCCcEEEEEecC
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
.+|+.+.++.-...+|++++|--
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999887789999999954
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.91 E-value=0.13 Score=40.03 Aligned_cols=104 Identities=15% Similarity=0.245 Sum_probs=64.2
Q ss_pred EEEecCCCeEEEecCCCeEEEEecCCCCceEEec-cCCCcEEEEEec--CCCCEEEEeeCCCeEEEEeCC-----C----
Q 039044 53 STWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVA-MHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTR-----Q---- 120 (194)
Q Consensus 53 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~v~vwd~~-----~---- 120 (194)
+.-+.-++.-+.-+....+.|||.+.+....+.. ...+.|.++.|. |+++.+++.|..+.|.++--. .
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3333333333333445579999998876433222 346789999996 588999999999999998532 1
Q ss_pred CCceeEEe------cCCeEEEEecCCCEEEEEcCCCcEEEEECC
Q 039044 121 PNPVHTQQ------LPDRCYALTVRYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 121 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~ 158 (194)
..++.++. .+.....|.++|..++ |+ +..+.|+|-.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS-GNQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEE-Ee-CCEEEEECCC
Confidence 12333332 2344667777775544 33 3458888754
No 396
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.89 E-value=0.098 Score=38.11 Aligned_cols=178 Identities=12% Similarity=0.133 Sum_probs=83.1
Q ss_pred EEcCCCCEEE-EeeCCCe--EEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE
Q 039044 7 CFSPKANILV-ATSWDNQ--VRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 7 ~~~p~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
+|.++|+.|+ .+..||. +.+.|+.+++. .+...+.........++|+.+.++-......++-.|+++.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-----~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEI-----TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-----EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEE-----EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 5677886555 4445665 44555555531 22222222223356677888877655555688999999887655
Q ss_pred EeccCCCcEEEEEec--CCCCEEEEeeC---C-------------------CeEEEEeCCCCCceeEEecCC--eEEEEe
Q 039044 84 TVAMHDAPIKEVAWI--PEMNLLATGSW---D-------------------KTLKYWDTRQPNPVHTQQLPD--RCYALT 137 (194)
Q Consensus 84 ~~~~~~~~v~~~~~~--~~~~~l~~~~~---d-------------------~~v~vwd~~~~~~~~~~~~~~--~~~~~~ 137 (194)
.+......+-...|. .++..++..-. | ..|.-.|+.+++....+.... ..+.++
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fs 196 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFS 196 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccC
Confidence 555555555445553 35555543211 1 125566777776554444433 577888
Q ss_pred cCCC-EEEEEcC---CCc-EEEEECCCCCeeeEEeeC-CCcceeeEEEEecCCCeeEE
Q 039044 138 VRYP-LMVVGTA---DRN-LVVFNLQNPQTEFKRINS-PLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 138 ~~~~-~l~~~~~---dg~-v~~~d~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~l~~ 189 (194)
|... .|+.|-+ +.. -+||-+++.......+.. .....+..=-|.|||..+..
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8654 4555544 221 367766543322222211 11233444567788876654
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.88 E-value=0.034 Score=42.99 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=38.0
Q ss_pred CCCEEEEeeCC------CeEEEEeCCC-CCcee--EEecCCe-EEEEecCCCEEEEEcCCC--cEEEEECCCCC
Q 039044 100 EMNLLATGSWD------KTLKYWDTRQ-PNPVH--TQQLPDR-CYALTVRYPLMVVGTADR--NLVVFNLQNPQ 161 (194)
Q Consensus 100 ~~~~l~~~~~d------~~v~vwd~~~-~~~~~--~~~~~~~-~~~~~~~~~~l~~~~~dg--~v~~~d~~~~~ 161 (194)
++++.+.|+.+ ..+..||.++ .+... .+..+.. .-...-++...++|+.+| .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 56677777654 2467899887 45432 2222211 222333778888888888 67788887755
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.0098 Score=39.55 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred CCeEEEecCCCeEEEEecCCCCceEEe-ccCCCcEE-EEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe----cCCe
Q 039044 59 GTTVFSGGCDKQVKMWPLLSGGQPVTV-AMHDAPIK-EVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ----LPDR 132 (194)
Q Consensus 59 ~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~~~~ 132 (194)
+..++.|+.+|.|.+|........... ..-...|. .+.-..++.+..++..|+.|+.|++.-.+.+-... .+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457899999999999987632222211 11122222 22223356688899999999999988766553322 2333
Q ss_pred EEEEecCCCEEEEE--cCCCcEEEEECCCC
Q 039044 133 CYALTVRYPLMVVG--TADRNLVVFNLQNP 160 (194)
Q Consensus 133 ~~~~~~~~~~l~~~--~~dg~v~~~d~~~~ 160 (194)
.....-.++.+... +.|..++.|++...
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 44455556666666 67777888877653
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.089 Score=36.65 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=83.2
Q ss_pred cCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEecc-CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q 039044 44 ISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAM-HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122 (194)
Q Consensus 44 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 122 (194)
.+....+.++.|+|+.+.|++......-.++=...|+.++++.- .-.....+.+..++++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 44455699999999999999888887777776677888776531 12334567888888888888888999988776553
Q ss_pred cee-----EEec--------CCeEEEEecCCCEEEEEcCCCcEEEEECCC
Q 039044 123 PVH-----TQQL--------PDRCYALTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 123 ~~~-----~~~~--------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
.+. .+.. .-..++++|....++.+=+-.-+.||....
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 221 1111 114689999998888888877777776653
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.085 Score=36.36 Aligned_cols=178 Identities=11% Similarity=-0.050 Sum_probs=97.7
Q ss_pred eEEEcCCCCEEEEeeCCC--eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 5 SLCFSPKANILVATSWDN--QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
.+.|..++.++-+.+.-| .|+.+|+.+++.. ........----.++.. +++...-.-.++...+||..+-+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~----~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL----QSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEE----EEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE----EEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 455655666667766655 6888888877531 11111111122233333 2334445557889999999988888
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCC--------eEEEEecCCCEEEEEcCCCcEEE
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPD--------RCYALTVRYPLMVVGTADRNLVV 154 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~dg~v~~ 154 (194)
.++. ....-..++ .+++.|+.+.....|+.+|..+.+....+.... +.+.+. +|...+=.=....|..
T Consensus 124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 7775 345667777 467777777778899999998877766654321 122222 4433333333445666
Q ss_pred EECCCCCeeeEEe-------------eCCCcceeeEEEEecCCCeeEEEE
Q 039044 155 FNLQNPQTEFKRI-------------NSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 155 ~d~~~~~~~~~~~-------------~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
.|..+++..-..- ..+...-.+.|++.|..+.+.+..
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6666655321110 001134579999999877766553
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.71 E-value=0.037 Score=43.45 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=71.8
Q ss_pred CCCEEEEeeCCCeEEEEecccCCc--------------ccccccccccCCCCCeeEEEEe--cCCCeEEEecCCCeEEEE
Q 039044 11 KANILVATSWDNQVRCWEISRGGT--------------GVASVPKASISHDHPVLCSTWK--DDGTTVFSGGCDKQVKMW 74 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~ 74 (194)
..+.|+.+..||.|.+|....-.. .....+.........+.+++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 457889999999999997743110 0001112222345578899998 788899999888888888
Q ss_pred ecCCC--Cc-eEEeccCCCcEEEEEecCCC---C---EEEEeeCCCeEEEEeC
Q 039044 75 PLLSG--GQ-PVTVAMHDAPIKEVAWIPEM---N---LLATGSWDKTLKYWDT 118 (194)
Q Consensus 75 d~~~~--~~-~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~v~vwd~ 118 (194)
-.... +. ...-..+...|.++.|-++. . ++++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65432 11 11111356678899997732 2 7888888999998887
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.69 E-value=0.14 Score=36.97 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCC-cccccccccccCCCCCeeEEEEecC---CCeEEEecC-C--------
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGG-TGVASVPKASISHDHPVLCSTWKDD---GTTVFSGGC-D-------- 68 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d-------- 68 (194)
.-++|+|.|+++++++ .+.|.|++++..... ...................++++|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999887665 569999999922221 1111112233445677899999994 334443322 1
Q ss_pred CeEEEEecCCC-------CceE-Eecc---CCCcEEEEEecCCCCEEEEeeCCC
Q 039044 69 KQVKMWPLLSG-------GQPV-TVAM---HDAPIKEVAWIPEMNLLATGSWDK 111 (194)
Q Consensus 69 ~~i~~~d~~~~-------~~~~-~~~~---~~~~v~~~~~~~~~~~l~~~~~d~ 111 (194)
..|.-|....+ +.+. .+.. .......|+|.|+|.+.++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444444433 1111 1121 234456799999998777766543
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.033 Score=45.56 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=74.8
Q ss_pred eeeEEEcCCCCEEEE--eeCCCeEEEEecccCCcccccccc------cccCCCCCeeEEEEecCC-CeEEEecCCCeEEE
Q 039044 3 VSSLCFSPKANILVA--TSWDNQVRCWEISRGGTGVASVPK------ASISHDHPVLCSTWKDDG-TTVFSGGCDKQVKM 73 (194)
Q Consensus 3 v~~~~~~p~~~~l~~--~~~d~~i~i~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~ 73 (194)
|..+...+|+...++ .+.+-.|..||+..-......... ..........++.|+|.- ...+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 455666677654443 334447889998765331111111 122234456788898843 24556667888888
Q ss_pred EecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 74 WPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 74 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
..+........-..-....++++|+|.|+.++.|-..|++.-|...
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 8776544333222345678999999999999999999999988654
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.59 E-value=0.091 Score=38.90 Aligned_cols=94 Identities=18% Similarity=0.310 Sum_probs=60.2
Q ss_pred eEEEcCCCCEEEEeeCCCeEEE---EecccCC--ccccccc-ccccCC--CCCeeEEEEec-----------CCCeEEEe
Q 039044 5 SLCFSPKANILVATSWDNQVRC---WEISRGG--TGVASVP-KASISH--DHPVLCSTWKD-----------DGTTVFSG 65 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~d~~i~i---~~~~~~~--~~~~~~~-~~~~~~--~~~i~~~~~~~-----------~~~~l~~~ 65 (194)
.++.+|+++.|+.|..+..+.+ |+..... ....... .....+ ...|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5688999999999987776555 5432221 1000100 111112 15677777654 35689999
Q ss_pred cCCCeEEEEecCCCCceEEeccCCCcEEEEEecC
Q 039044 66 GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIP 99 (194)
Q Consensus 66 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 99 (194)
..+|.|++|.. +|..+....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999995 6666655556788888887743
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.54 E-value=0.016 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCeeeEEEcCCC---CEEEEeeCCCeEEEEeccc
Q 039044 1 DSVSSLCFSPKA---NILVATSWDNQVRCWEISR 31 (194)
Q Consensus 1 ~~v~~~~~~p~~---~~l~~~~~d~~i~i~~~~~ 31 (194)
|+|.++.|+|+. ++|+.+-..|.|.++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 689999999853 5777777779999999985
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.54 E-value=0.25 Score=38.11 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCCceeEEecCCe--EEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeE
Q 039044 111 KTLKYWDTRQPNPVHTQQLPDR--CYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFL 188 (194)
Q Consensus 111 ~~v~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~ 188 (194)
+.|.-+|+.+++..-..+.... .-.+.-.+..++.++.+|.++.+|.++++...+.... ....-.=+.+.-+|+.++
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g-~~~~a~P~ty~~~G~qYv 519 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG-SGIVGPPVTYEQDGKQYV 519 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC-CCceecCEEEEeCCEEEE
Confidence 4577778877776655543221 1112235567778888999999999999876654332 222223344556787766
Q ss_pred EEEee
Q 039044 189 VCIHL 193 (194)
Q Consensus 189 ~~~~~ 193 (194)
+...+
T Consensus 520 ~~~~G 524 (527)
T TIGR03075 520 AVLSG 524 (527)
T ss_pred EEEec
Confidence 65443
No 407
>PHA03098 kelch-like protein; Provisional
Probab=96.43 E-value=0.3 Score=37.75 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=52.2
Q ss_pred CCCeEEEecCC-----CeEEEEecCCCCceE--EeccCCCcEEEEEecCCCCEEEEeeCC------CeEEEEeCCCCCce
Q 039044 58 DGTTVFSGGCD-----KQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWDTRQPNPV 124 (194)
Q Consensus 58 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~vwd~~~~~~~ 124 (194)
+++.++.|+.+ ..+..||..+++-.. .+. +...-.+++ .-+++..+.||.+ +.+..||+.+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777765 346778876543211 111 111111122 2256677777632 45888998765543
Q ss_pred eEEecCC---eEEEEecCCCEEEEEcCC--------CcEEEEECCCCC
Q 039044 125 HTQQLPD---RCYALTVRYPLMVVGTAD--------RNLVVFNLQNPQ 161 (194)
Q Consensus 125 ~~~~~~~---~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~~~ 161 (194)
.....+. ...+...++..++.|+.+ ..+.+||..+.+
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 2222111 112233455666666542 138888987754
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.41 E-value=0.043 Score=36.96 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=12.1
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCc
Q 039044 100 EMNLLATGSWDKTLKYWDTRQPNP 123 (194)
Q Consensus 100 ~~~~l~~~~~d~~v~vwd~~~~~~ 123 (194)
+++++++.+.+|.+++||+.+.+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCee
Confidence 444555555555555555554443
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.40 E-value=0.18 Score=34.87 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=84.2
Q ss_pred CeeeEEEcCCCCEEEEee---CCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe-cC
Q 039044 2 SVSSLCFSPKANILVATS---WDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP-LL 77 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d-~~ 77 (194)
.+.+.+++++++.++... ....++++...... .... ....+..-.|++++...+....+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------RPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------eeec--cCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 367889999998777665 23345555443321 1111 233677889999988777776666666663 23
Q ss_pred CCCce-EEeccC--CCcEEEEEecCCCCEEEEee---CCCeEEEEeCCC---C--C----ceeEE---ecCCeEEEEecC
Q 039044 78 SGGQP-VTVAMH--DAPIKEVAWIPEMNLLATGS---WDKTLKYWDTRQ---P--N----PVHTQ---QLPDRCYALTVR 139 (194)
Q Consensus 78 ~~~~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~v~vwd~~~---~--~----~~~~~---~~~~~~~~~~~~ 139 (194)
.+... ...... ...|..+.++|||..++... .++.|.+=-+.. + . +.... ......+.|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 33322 222211 12899999999999887765 346676654431 2 1 11111 123457888888
Q ss_pred CCEEEEEcCCCc
Q 039044 140 YPLMVVGTADRN 151 (194)
Q Consensus 140 ~~~l~~~~~dg~ 151 (194)
+..++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 887777665443
No 410
>PHA02713 hypothetical protein; Provisional
Probab=96.29 E-value=0.38 Score=37.46 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=52.6
Q ss_pred CCCeEEEecCCC-----eEEEEecCCCCceE--EeccCCCcEEEEEecCCCCEEEEeeCC--------------------
Q 039044 58 DGTTVFSGGCDK-----QVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD-------------------- 110 (194)
Q Consensus 58 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------- 110 (194)
+++..+.|+.++ .+..||..+.+-.. .+.........+.. ++.+.+.||.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 567777777654 47888877643211 11111111112222 67777777754
Q ss_pred ---CeEEEEeCCCCCceeEEec--CC-eEEEEecCCCEEEEEcCC------CcEEEEECCC
Q 039044 111 ---KTLKYWDTRQPNPVHTQQL--PD-RCYALTVRYPLMVVGTAD------RNLVVFNLQN 159 (194)
Q Consensus 111 ---~~v~vwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~d------g~v~~~d~~~ 159 (194)
..+..||.++.+....-.. +. ..-...-+++..+.|+.+ ..+..||.++
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 2477788876654322211 11 112233456666667653 2367899887
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=0.19 Score=34.02 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=57.1
Q ss_pred CeeEEEEecCCCeEE-EecCCCeEEEEe--cCCCCc-----eEEecc----CCCcEEEEEecCCCCEEEEeeCCCeEEEE
Q 039044 49 PVLCSTWKDDGTTVF-SGGCDKQVKMWP--LLSGGQ-----PVTVAM----HDAPIKEVAWIPEMNLLATGSWDKTLKYW 116 (194)
Q Consensus 49 ~i~~~~~~~~~~~l~-~~~~d~~i~~~d--~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~vw 116 (194)
--+.++|+.+.+.+. +-+.+-.|.-|| ..+|.. +..++. .....-.++...+|++.+++-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 345789998877655 455677787787 444432 222221 11123345666788988888889999999
Q ss_pred eCCCCCceeEEecCC
Q 039044 117 DTRQPNPVHTQQLPD 131 (194)
Q Consensus 117 d~~~~~~~~~~~~~~ 131 (194)
|..+++.+.++..+.
T Consensus 239 dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPT 253 (310)
T ss_pred CCCCCcEEEEEEcCC
Confidence 999999999998875
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.28 E-value=0.0027 Score=50.24 Aligned_cols=95 Identities=7% Similarity=0.122 Sum_probs=54.8
Q ss_pred CeEEEEecccCC--cccccccccccCCCCCeeEEEEec---CCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEE
Q 039044 22 NQVRCWEISRGG--TGVASVPKASISHDHPVLCSTWKD---DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVA 96 (194)
Q Consensus 22 ~~i~i~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 96 (194)
|.+.+|+++.-. ............-...+.-+.|.| +.-++..+..++.+++........ ..++.|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567889876422 111111222223334445666666 566788888899999887765433 33455777776665
Q ss_pred e-----------cCCCCEEEEeeCCCeEEEEe
Q 039044 97 W-----------IPEMNLLATGSWDKTLKYWD 117 (194)
Q Consensus 97 ~-----------~~~~~~l~~~~~d~~v~vwd 117 (194)
| +|||..++....||.++.|.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 5 45555555555555555554
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.10 E-value=0.13 Score=34.63 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=51.5
Q ss_pred EecCCCeEEEecCCCeEEEEecCCCCceEEe-------c-------cCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCC
Q 039044 55 WKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV-------A-------MHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 55 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 120 (194)
+..+++++++-+.+|.+++||+.+++.+..- . .....|..+..+.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4557889999999999999999987653321 1 2446788888888888777665 57888898776
Q ss_pred CCcee
Q 039044 121 PNPVH 125 (194)
Q Consensus 121 ~~~~~ 125 (194)
+..+.
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 55443
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.07 E-value=0.2 Score=37.23 Aligned_cols=43 Identities=7% Similarity=-0.167 Sum_probs=35.5
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCC
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD 89 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 89 (194)
...+.++..+|.+++.++...-|.|.++|+.++..++.+++-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 4557899999999988888888999999999988777666543
No 415
>PRK10115 protease 2; Provisional
Probab=96.05 E-value=0.59 Score=37.44 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=64.4
Q ss_pred CeeEEEEecCCCeEEEec-----CCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCC------CeEEEEe
Q 039044 49 PVLCSTWKDDGTTVFSGG-----CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWD------KTLKYWD 117 (194)
Q Consensus 49 ~i~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~vwd 117 (194)
.+..+.|+|++++|+-+. +...+++.|+.++..+........ ..++|.++++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 466788999999887543 334688999988764322211111 469999998876665442 3677788
Q ss_pred CCCC--CceeEEec--CCe--EEEEecCCCEEEEEcC---CCcEEEEECC
Q 039044 118 TRQP--NPVHTQQL--PDR--CYALTVRYPLMVVGTA---DRNLVVFNLQ 158 (194)
Q Consensus 118 ~~~~--~~~~~~~~--~~~--~~~~~~~~~~l~~~~~---dg~v~~~d~~ 158 (194)
+.++ +....+.. ... ....+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8877 22222221 111 1222337777665443 4568888853
No 416
>PHA03098 kelch-like protein; Provisional
Probab=96.00 E-value=0.52 Score=36.44 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCCEEEEeeCC-----CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC------CeEEEEecCCC
Q 039044 11 KANILVATSWD-----NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD------KQVKMWPLLSG 79 (194)
Q Consensus 11 ~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~ 79 (194)
++.+++.|+.+ ..+..||..+..- ....... ....-.+++ .-+++..+.|+.+ ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W---~~~~~lp-~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW---REEPPLI-FPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce---eeCCCcC-cCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 45666777765 2466677655431 1111111 111111222 2256666666632 35788887764
Q ss_pred CceE--EeccCCCcEEEEEecCCCCEEEEeeCC--------CeEEEEeCCCCCceeEEec--CC-eEEEEecCCCEEEEE
Q 039044 80 GQPV--TVAMHDAPIKEVAWIPEMNLLATGSWD--------KTLKYWDTRQPNPVHTQQL--PD-RCYALTVRYPLMVVG 146 (194)
Q Consensus 80 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~vwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~ 146 (194)
+-.. .+....... +++ ..++..++.|+.+ ..+.+||..+.+....-.. +. .......++..++.|
T Consensus 417 ~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 494 (534)
T PHA03098 417 KWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVG 494 (534)
T ss_pred eeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEc
Confidence 3211 111011111 122 2255666666643 2388899887654322111 11 111222366666777
Q ss_pred cCC-----CcEEEEECCCCC
Q 039044 147 TAD-----RNLVVFNLQNPQ 161 (194)
Q Consensus 147 ~~d-----g~v~~~d~~~~~ 161 (194)
+.+ ..+.+||..+.+
T Consensus 495 G~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcCCcccceeEEEeCCCCE
Confidence 654 468888887654
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.99 E-value=0.55 Score=36.67 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=77.6
Q ss_pred CCCEEEEeeCC-C-----eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCe-----EEEEecCCC
Q 039044 11 KANILVATSWD-N-----QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQ-----VKMWPLLSG 79 (194)
Q Consensus 11 ~~~~l~~~~~d-~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~ 79 (194)
++...++|+.| | ++..||.....- ............. .++ .-+|...+.|+.||. +..||..+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W---~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQW---TPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCce---eccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCC
Confidence 35677888888 2 466677665531 1111111111111 111 126778888988864 677776654
Q ss_pred CceEEeccCCCcEEEEEec-CCCCEEEEeeCCC------eEEEEeCCCCCceeEEecC--CeEE-EEecCCCEEEEEcCC
Q 039044 80 GQPVTVAMHDAPIKEVAWI-PEMNLLATGSWDK------TLKYWDTRQPNPVHTQQLP--DRCY-ALTVRYPLMVVGTAD 149 (194)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~------~v~vwd~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~~d 149 (194)
+-...- ............ -+|...+.||.++ ++..||..+.+....-... -... ...-++...+.|+.|
T Consensus 407 ~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 407 KWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred cccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCcc
Confidence 422111 111122222222 2778888888654 5778998877654332222 1222 223466677777776
Q ss_pred Cc-----EEEEECCCCC
Q 039044 150 RN-----LVVFNLQNPQ 161 (194)
Q Consensus 150 g~-----v~~~d~~~~~ 161 (194)
+. |..||..+.+
T Consensus 486 ~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQ 502 (571)
T ss_pred CCCccceEEEEcCCCCc
Confidence 63 6778888765
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.96 E-value=0.66 Score=37.24 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=51.2
Q ss_pred CCeeEEEEecCCCeEEEecCCCeEEEEecC----------CCCc--eE-Ee--------ccCCCcEEEEEecCC---CCE
Q 039044 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLL----------SGGQ--PV-TV--------AMHDAPIKEVAWIPE---MNL 103 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~----------~~~~--~~-~~--------~~~~~~v~~~~~~~~---~~~ 103 (194)
-.|..+..+|+|++++..+..|.. |..+. .++. .. .+ ..+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 457888999999999988877643 33332 1111 11 11 123467899999995 578
Q ss_pred EEEeeCCCeEEEEeCCCC
Q 039044 104 LATGSWDKTLKYWDTRQP 121 (194)
Q Consensus 104 l~~~~~d~~v~vwd~~~~ 121 (194)
|+.=..|+.+++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888888999999999754
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=95.92 E-value=0.41 Score=34.62 Aligned_cols=141 Identities=10% Similarity=0.088 Sum_probs=78.1
Q ss_pred CCCeeEEEEecCCCeEEEecCCCeEEE-EecCCCCceEEe-ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQVKM-WPLLSGGQPVTV-AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
...+..+.+.|++.+++++. .|.+.. ++ ..++.-... ..-...++++.+.++++.++++ ..|.+.+=....++.-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688999999887666654 554442 22 122222222 2334678999999998876655 4576653223333322
Q ss_pred eEEec-------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEee--CCCcceeeEEEEecCCCeeEEEEee
Q 039044 125 HTQQL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 125 ~~~~~-------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
..... ....+.+.+++..++ ++.+|.+. .....++ ...... .........+.|..+++.+++|..+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC-CCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 21111 123566777666544 55567554 3333333 222221 1223457888888888899888654
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.74 E-value=0.53 Score=34.50 Aligned_cols=134 Identities=12% Similarity=0.081 Sum_probs=65.6
Q ss_pred EEEEecCCCeEEE-ecCCC--eEEEEecCCCCceEEeccCC-CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE
Q 039044 52 CSTWKDDGTTVFS-GGCDK--QVKMWPLLSGGQPVTVAMHD-APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 127 (194)
Q Consensus 52 ~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 127 (194)
.=+|.++|+.|+- +..+| .+.+.|+.+++..+ +.... .......++|+.+.++.......|.-.|+++.+.....
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 3467888866554 44455 56777887766554 33222 22224566788888776666789999999988754444
Q ss_pred ecCCe-----EEEEecCCCEEEEEc----------------------CCCcEEEEECCCCCeeeEEeeCCCcceeeEEEE
Q 039044 128 QLPDR-----CYALTVRYPLMVVGT----------------------ADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAA 180 (194)
Q Consensus 128 ~~~~~-----~~~~~~~~~~l~~~~----------------------~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~ 180 (194)
..+.. ....+.++..++..- -...|.-.|+.+++...... ....+..+.|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH~~f 195 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGHVQF 195 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccCccc
Confidence 44331 222334454443221 01235556777765322211 3456788999
Q ss_pred ecCCCeeEE
Q 039044 181 FPDQQGFLV 189 (194)
Q Consensus 181 ~p~~~~l~~ 189 (194)
+|....+++
T Consensus 196 sP~dp~li~ 204 (386)
T PF14583_consen 196 SPTDPTLIM 204 (386)
T ss_dssp ETTEEEEEE
T ss_pred CCCCCCEEE
Confidence 997655444
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.63 E-value=0.16 Score=39.40 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCCCEEEEeeCCCeEEEEeccc---CCcccccc----------cccc--------cCCCCCeeEEEEec----CCCeEEE
Q 039044 10 PKANILVATSWDNQVRCWEISR---GGTGVASV----------PKAS--------ISHDHPVLCSTWKD----DGTTVFS 64 (194)
Q Consensus 10 p~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~----------~~~~--------~~~~~~i~~~~~~~----~~~~l~~ 64 (194)
++...++.+..||.+....... ........ .... .........+++.+ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999988887765 11100000 0000 11123455666666 6788999
Q ss_pred ecCCCeEEEEecCCCCceEEe
Q 039044 65 GGCDKQVKMWPLLSGGQPVTV 85 (194)
Q Consensus 65 ~~~d~~i~~~d~~~~~~~~~~ 85 (194)
.+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999885544
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.58 E-value=1 Score=36.57 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=70.5
Q ss_pred CCeEEEecCCCeEEEEecCCCCceEEeccCCCc--------EEEEEecC----------------CCCEEEEeeCCCeEE
Q 039044 59 GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAP--------IKEVAWIP----------------EMNLLATGSWDKTLK 114 (194)
Q Consensus 59 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~d~~v~ 114 (194)
+..++.++.++.|.-.|.++|+.+.++...... .+.+++.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777888899999999999988776532211 11222211 334777888899999
Q ss_pred EEeCCCCCceeEEecCCeE---------------EEEec--CCCEEEEEcC----------CCcEEEEECCCCCeeeEEe
Q 039044 115 YWDTRQPNPVHTQQLPDRC---------------YALTV--RYPLMVVGTA----------DRNLVVFNLQNPQTEFKRI 167 (194)
Q Consensus 115 vwd~~~~~~~~~~~~~~~~---------------~~~~~--~~~~l~~~~~----------dg~v~~~d~~~~~~~~~~~ 167 (194)
-.|.++++.+..+...... ..-.| .+..+++|+. +|.|+-+|.++++......
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 9999999988654322110 01111 2345666643 6889999999998765543
No 423
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.56 E-value=0.69 Score=34.54 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=86.8
Q ss_pred CCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec----CCCeEEEecCCCeEEEEecCCC--C-----
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD----DGTTVFSGGCDKQVKMWPLLSG--G----- 80 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~~~d~~~~--~----- 80 (194)
...+++|+..|.++||+....+.... .......-+.||..+..-. .....++.-.-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 46899999999999999855432111 1111223457888776543 2223333346677888887322 1
Q ss_pred --ceEEeccCC--CcEEEEEecC----C-CCEEEEeeCCCeEEEEeCCCCCceeEEec--CCeEEEEecCCCEEEEEcCC
Q 039044 81 --QPVTVAMHD--APIKEVAWIP----E-MNLLATGSWDKTLKYWDTRQPNPVHTQQL--PDRCYALTVRYPLMVVGTAD 149 (194)
Q Consensus 81 --~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d 149 (194)
.+..+..|. .....++.-| . ..++++-+.||.+.+++-+.-.-.+.+.. -...+.+.+.-..+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 112222232 2334444433 2 35788889999999998664322222111 12467888888889999888
Q ss_pred CcEEEEEC
Q 039044 150 RNLVVFNL 157 (194)
Q Consensus 150 g~v~~~d~ 157 (194)
..+..|..
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 88888864
No 424
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.55 E-value=0.67 Score=34.41 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=75.5
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEecCCCCc--eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-----
Q 039044 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ--PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN----- 122 (194)
Q Consensus 50 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~----- 122 (194)
...+...+++.+++.+.....++-||- +.. ...-......++.+.|.+++..++++ ..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 344556677776666654433334442 222 11122335678999999998877765 4565443 223332
Q ss_pred ceeEEecC-----CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEee--CCCcceeeEEEEecCCCeeEEEEee
Q 039044 123 PVHTQQLP-----DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRIN--SPLKYQTRCVAAFPDQQGFLVCIHL 193 (194)
Q Consensus 123 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~l~~~~~~ 193 (194)
........ ...+.+.+++.. +.++..|.+.... ..++ .+.... .........+.|.++++.+++|.++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~G~-tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G 391 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEA-WAAGGSGILLRST-DGGK-SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDG 391 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcE-EEEECCCcEEEeC-CCCc-ceeEccccCCCCcceeEEEEcCCCceEEEeCCc
Confidence 22322222 234556656554 5555577655543 3332 233322 2334567899999999999988654
No 425
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.53 E-value=0.24 Score=38.40 Aligned_cols=73 Identities=19% Similarity=0.116 Sum_probs=45.7
Q ss_pred cCCCeEEEecCCCeEEEEecCC----CCceEE--ecc--------------------CCCcEEEEEecC----CCCEEEE
Q 039044 57 DDGTTVFSGGCDKQVKMWPLLS----GGQPVT--VAM--------------------HDAPIKEVAWIP----EMNLLAT 106 (194)
Q Consensus 57 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~--~~~--------------------~~~~v~~~~~~~----~~~~l~~ 106 (194)
++...++.+..||.+....... +..... +.. ....+..++.+. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999888887654 111111 100 123455666666 6789999
Q ss_pred eeCCCeEEEEeCCCCCceeEEec
Q 039044 107 GSWDKTLKYWDTRQPNPVHTQQL 129 (194)
Q Consensus 107 ~~~d~~v~vwd~~~~~~~~~~~~ 129 (194)
.+.|+++++||+.+++++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999998665533
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.73 Score=34.54 Aligned_cols=138 Identities=9% Similarity=0.041 Sum_probs=81.6
Q ss_pred eeEEEEecCCCeEEEecCCCeEEEEecCCCCc---eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce--
Q 039044 50 VLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ---PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV-- 124 (194)
Q Consensus 50 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-- 124 (194)
-+.+-|.. .+..+.+...|.+.-|-...... +..-...+++|.++.|++|.+.+++--.+..|.+++....+..
T Consensus 25 sngvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 34455554 34344444555566676554332 2222234679999999999999999999999999998443322
Q ss_pred --eEEecC---CeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEE
Q 039044 125 --HTQQLP---DRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 125 --~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~ 191 (194)
++.+.. ...++|+.+ .-++..+..| +-+|......... +....++..|+-..|.|+...++.++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrsl-RlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSL-RLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhh-hhhhhcccCccEEEEccccceEeeec
Confidence 222222 223444433 5566666555 6666554433222 22334666677888888877666554
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.49 E-value=0.62 Score=33.60 Aligned_cols=142 Identities=11% Similarity=0.120 Sum_probs=85.4
Q ss_pred CCCeeEEEEecCCCeEEEecCCCe------EEEEecCCC----CceE-----EeccCCC--------cEEEEEecCCCCE
Q 039044 47 DHPVLCSTWKDDGTTVFSGGCDKQ------VKMWPLLSG----GQPV-----TVAMHDA--------PIKEVAWIPEMNL 103 (194)
Q Consensus 47 ~~~i~~~~~~~~~~~l~~~~~d~~------i~~~d~~~~----~~~~-----~~~~~~~--------~v~~~~~~~~~~~ 103 (194)
-+.+..+.+.+++..+++.+.+|. +..+++... ..+. .+....+ -..+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999976667777777777 665555431 1111 1111111 3347888778888
Q ss_pred EEEeeCC------CeEEEEeCCCCCceeEEecC------------------CeEEEEecCCCEEEEEcCCC-------c-
Q 039044 104 LATGSWD------KTLKYWDTRQPNPVHTQQLP------------------DRCYALTVRYPLMVVGTADR-------N- 151 (194)
Q Consensus 104 l~~~~~d------~~v~vwd~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~dg-------~- 151 (194)
+++.-.+ ..|..++.. ++....+..+ -..++++|+++.|+++.+.. .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877667 788888876 5544333111 14789999999777665422 1
Q ss_pred ------EEEE--ECCCCC---eeeEEeeCC-----CcceeeEEEEecCCCeeEE
Q 039044 152 ------LVVF--NLQNPQ---TEFKRINSP-----LKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 152 ------v~~~--d~~~~~---~~~~~~~~~-----~~~~v~~i~~~p~~~~l~~ 189 (194)
++++ |..+.. ..+...... ....+..+.+-|+++.|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 444311 223222222 3567889999999987764
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.49 E-value=0.2 Score=37.34 Aligned_cols=158 Identities=13% Similarity=0.132 Sum_probs=89.2
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccC-CCCCee-EEEEecCCCeEEEecCCCeEEEE-ecCC
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASIS-HDHPVL-CSTWKDDGTTVFSGGCDKQVKMW-PLLS 78 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~-d~~~ 78 (194)
.|..+-..|||+.+..-+. ..+.++++........+......+ ....++ .+..-..|.-+..+..||.|.-| |.+.
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 3556678899998887665 678899887654311111111011 001121 11122345567888899988876 5554
Q ss_pred CCce-----EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCcee--EEecCCeEEEEecCCCEEEEEcCCCc
Q 039044 79 GGQP-----VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVH--TQQLPDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 79 ~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
+... +.++-...++.-+.-..+.+-+++-+..|++.++.....+.+- ........++++|.+.++++-. .|.
T Consensus 301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gk 379 (733)
T COG4590 301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGK 379 (733)
T ss_pred CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCc
Confidence 3321 1122122333333222233456777778888887765544332 1222446789999999888654 466
Q ss_pred EEEEECCCCC
Q 039044 152 LVVFNLQNPQ 161 (194)
Q Consensus 152 v~~~d~~~~~ 161 (194)
++++.+++..
T Consensus 380 i~~~~l~Nr~ 389 (733)
T COG4590 380 IRLAQLENRN 389 (733)
T ss_pred eEEEEecCCC
Confidence 9999887654
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.48 E-value=0.44 Score=31.82 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=60.0
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC---C---eEEEE---ecC--CCCc
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD---K---QVKMW---PLL--SGGQ 81 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~---~i~~~---d~~--~~~~ 81 (194)
+.|+.+.....|.+|++..... .+......-+.|..+.++..|++++|--.+ . .+|+| +.. ..++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~----~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC----PLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC----ceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 5555556677899999984432 122223344789999999999999986433 2 56665 211 1111
Q ss_pred eE-Eecc---------------------CCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCC
Q 039044 82 PV-TVAM---------------------HDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 82 ~~-~~~~---------------------~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~ 120 (194)
+. .+-+ -..++.+++..| .|++++ |+ ++.+.+|.+..
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKY 164 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEE
Confidence 11 1111 234566777777 565554 33 56777776653
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.31 E-value=0.033 Score=44.53 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=69.9
Q ss_pred EEEcC---CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEE-----------EEecCCCeEEEecCCCeE
Q 039044 6 LCFSP---KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCS-----------TWKDDGTTVFSGGCDKQV 71 (194)
Q Consensus 6 ~~~~p---~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~d~~i 71 (194)
+.|+| +.-++..+-.++.+++.+.+.... ..+.+|...+..+ ..+|||..|+++..||.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 44544 566777888889999888776532 2223354444333 268999999999999998
Q ss_pred EEEecC-----CCCceEEeccCC-CcEEEEEecCC-------C--CEEEEeeC-CCeEEEEeCCCCCce
Q 039044 72 KMWPLL-----SGGQPVTVAMHD-APIKEVAWIPE-------M--NLLATGSW-DKTLKYWDTRQPNPV 124 (194)
Q Consensus 72 ~~~d~~-----~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~l~~~~~-d~~v~vwd~~~~~~~ 124 (194)
+.|.+. ...+...++.|. .+-.|..|+.. + .+++++++ ...+++|.....+++
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 888753 223445566666 23223334322 1 23444443 457889988777766
No 431
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.91 Score=34.05 Aligned_cols=126 Identities=10% Similarity=0.142 Sum_probs=79.7
Q ss_pred eCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE----EeccCCCcEEE
Q 039044 19 SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV----TVAMHDAPIKE 94 (194)
Q Consensus 19 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~v~~ 94 (194)
...|.+.=|-....+.. ..+......+++|.++.|++|.+.++.--.+..|.+++....+... +.+.....|..
T Consensus 40 vrSggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG 117 (657)
T KOG2377|consen 40 VRSGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG 117 (657)
T ss_pred EecCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE
Confidence 33455666665544321 1223334466799999999999999999999999999974433322 22333456888
Q ss_pred EEecCCCCEEEEeeCCCeEEEEeCC----CCCceeEEecCCeEEEEecCCCEEEEEcC
Q 039044 95 VAWIPEMNLLATGSWDKTLKYWDTR----QPNPVHTQQLPDRCYALTVRYPLMVVGTA 148 (194)
Q Consensus 95 ~~~~~~~~~l~~~~~d~~v~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (194)
..|..+ .-++... +..+-+|... +-+.+++.....+-..++++.+.++.++.
T Consensus 118 F~W~~s-~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 118 FCWTSS-TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEecC-eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 899866 4455444 3345555443 23355667777788888888776555443
No 432
>PRK10115 protease 2; Provisional
Probab=95.20 E-value=1.3 Score=35.56 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=62.9
Q ss_pred eeeEEEcCCCCEEEEeeC-----CCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC------CeE
Q 039044 3 VSSLCFSPKANILVATSW-----DNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD------KQV 71 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i 71 (194)
+..+.++|++++|+.+.. ...|++.|+.++.. ....... .. ..++|.+|++.|+-...+ ..|
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~----l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW----YPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC----CCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 567789999998876533 23577888876531 1111111 11 459999998866654332 367
Q ss_pred EEEecCCC--CceEEeccCCCcEE-EEEecCCCCEEEEeeC---CCeEEEEeC
Q 039044 72 KMWPLLSG--GQPVTVAMHDAPIK-EVAWIPEMNLLATGSW---DKTLKYWDT 118 (194)
Q Consensus 72 ~~~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~v~vwd~ 118 (194)
..+++.++ +....+........ ....+.++++++..+. ++.+.+++.
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 78888777 22333333223233 2333447776654433 457888885
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.19 E-value=1.3 Score=35.42 Aligned_cols=144 Identities=10% Similarity=-0.000 Sum_probs=87.9
Q ss_pred CCEEEEeeCCCeEEEEecccCCccccc--------ccccc---------cCCCCCeeEEEEec--CCCeEEEecCCCeEE
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVAS--------VPKAS---------ISHDHPVLCSTWKD--DGTTVFSGGCDKQVK 72 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~--------~~~~~---------~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~ 72 (194)
.+++++|. .+.|.||+.......... .+... ......|+-|.... ....|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56677766 678999998654321100 00000 00122355554433 446788999999999
Q ss_pred EEecCC-------C-------C------ceEEeccCCCcEEEEEec--CCCCEEEEeeCCCeEEEEeCCCC--Cc----e
Q 039044 73 MWPLLS-------G-------G------QPVTVAMHDAPIKEVAWI--PEMNLLATGSWDKTLKYWDTRQP--NP----V 124 (194)
Q Consensus 73 ~~d~~~-------~-------~------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~--~~----~ 124 (194)
+|.++. . . +...+. -...+.+++++ ...+++|+++....|.||-.... +. -
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 0 111222 34578899998 77888988888888888865432 11 1
Q ss_pred eEEecCCeEEEEecCC---C---EEEEEcCCCcEEEEEC
Q 039044 125 HTQQLPDRCYALTVRY---P---LMVVGTADRNLVVFNL 157 (194)
Q Consensus 125 ~~~~~~~~~~~~~~~~---~---~l~~~~~dg~v~~~d~ 157 (194)
........+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1233445677777643 2 7888888999998887
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.17 E-value=1.2 Score=34.93 Aligned_cols=143 Identities=11% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCEEEEeeCCC------eEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCC------CeEEEEecCCC
Q 039044 12 ANILVATSWDN------QVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCD------KQVKMWPLLSG 79 (194)
Q Consensus 12 ~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~ 79 (194)
+.+++.|+.++ .+..||..++.- ...... .....-.+++.. ++...++|+.| ..+..||...+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w---~~~a~m-~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEW---SSLAPM-PSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcE---eecCCC-CcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 45677777763 577788766532 111111 122223344444 45777888888 35778887766
Q ss_pred CceE--EeccCCCcEEEEEecCCCCEEEEeeCCC-----eEEEEeCCCCCceeE--EecCCeEE-EEecCCCEEEEEcCC
Q 039044 80 GQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDK-----TLKYWDTRQPNPVHT--QQLPDRCY-ALTVRYPLMVVGTAD 149 (194)
Q Consensus 80 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~vwd~~~~~~~~~--~~~~~~~~-~~~~~~~~l~~~~~d 149 (194)
+-.. .+...........+ +|...++||.|| ++-.||.++.+.-.. +....... ....++...++|+.+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 5221 11111111111111 678888898886 477788877654322 22222222 334467777777754
Q ss_pred C------cEEEEECCCCC
Q 039044 150 R------NLVVFNLQNPQ 161 (194)
Q Consensus 150 g------~v~~~d~~~~~ 161 (194)
+ ++..||..+.+
T Consensus 438 ~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCccccceEEEEcCCCCc
Confidence 4 46788887754
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.05 E-value=0.34 Score=36.74 Aligned_cols=61 Identities=7% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCC
Q 039044 58 DGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTR 119 (194)
Q Consensus 58 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~ 119 (194)
.+.+++.++..|.|++||--.......+.+....|..+..+.+|.++++.+ ...+.+.|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 345899999999999999654444445666778899999999999877555 5677888765
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.00 E-value=1.5 Score=35.28 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=52.0
Q ss_pred CcEEEEEecCCCCEEEEeeCCCeEEEEeCCC----------CCc---eeEEe-----------cCCeEEEEecC---CCE
Q 039044 90 APIKEVAWIPEMNLLATGSWDKTLKYWDTRQ----------PNP---VHTQQ-----------LPDRCYALTVR---YPL 142 (194)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~----------~~~---~~~~~-----------~~~~~~~~~~~---~~~ 142 (194)
-.|..+..+|+|.+++..|..|. .|..+.. ++. ..+.. .....+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46889999999999999887554 4433321 111 11111 12246788886 478
Q ss_pred EEEEcCCCcEEEEECCCCCeeeEEe
Q 039044 143 MVVGTADRNLVVFNLQNPQTEFKRI 167 (194)
Q Consensus 143 l~~~~~dg~v~~~d~~~~~~~~~~~ 167 (194)
|+.-+.|+++++||+...+.+.+..
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 9999999999999998766555444
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.39 Score=31.99 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=66.7
Q ss_pred CCCeEEEecCC--CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEE-eeCCCeEEEEeCCCCCceeEEecCCeEE
Q 039044 58 DGTTVFSGGCD--KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQPNPVHTQQLPDRCY 134 (194)
Q Consensus 58 ~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 134 (194)
++.++.+.+.- ..|++||+.+++.+..-.-....+..=-...-+.++.. .-.+|.-..+|.++-+.+..+..+....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 45566665543 46999999988876543211112211111111222222 2347888899999999998888888888
Q ss_pred EEecCCCEEEEEcCCCcEEEEECCCC
Q 039044 135 ALTVRYPLMVVGTADRNLVVFNLQNP 160 (194)
Q Consensus 135 ~~~~~~~~l~~~~~dg~v~~~d~~~~ 160 (194)
.+..++..++.+....+++.-|..+.
T Consensus 135 gLt~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 135 GLTSDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeecCCcceEeeCCceEEEecCHHHh
Confidence 88888888888777777877776643
No 438
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.92 E-value=1.5 Score=34.72 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEec------CCCeEEEecC-C---Ce
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKD------DGTTVFSGGC-D---KQ 70 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~-d---~~ 70 (194)
+.|-.+.+.++++.+++...+|.|.+||........ .......+...+.--.|-+ ...++++.+. + -.
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~--~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEK--VPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEecccccccc--ccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 357788999999999999999999999993332110 0111111221111112222 1234444433 2 34
Q ss_pred EEEEecC-CCCceEEec---cCCCcEEEEEecC-CCCEEEEeeCCCeEEEEeCCCCCceeEEecC-------CeEEEEec
Q 039044 71 VKMWPLL-SGGQPVTVA---MHDAPIKEVAWIP-EMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-------DRCYALTV 138 (194)
Q Consensus 71 i~~~d~~-~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-------~~~~~~~~ 138 (194)
.+++.+. ....+.++. .+........|+. +|....- .++.|.+|++.+.+..+++..+ ...+++.|
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 6777771 223333332 2222333334433 4543333 5789999999888777776654 13445544
Q ss_pred -CCCEEEEEcCCCcEEEEECC
Q 039044 139 -RYPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 139 -~~~~l~~~~~dg~v~~~d~~ 158 (194)
..++++.+. +..|++.|+.
T Consensus 286 ~s~nRvLLs~-~nkIyLld~~ 305 (670)
T PF10395_consen 286 PSPNRVLLSV-NNKIYLLDLK 305 (670)
T ss_pred CCCCeEEEEc-CCEEEEEeeh
Confidence 445555544 5679999985
No 439
>PRK13684 Ycf48-like protein; Provisional
Probab=94.89 E-value=1 Score=32.67 Aligned_cols=147 Identities=12% Similarity=0.007 Sum_probs=76.8
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCc
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQ 81 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~ 81 (194)
.+.++.+.|++.+++++. .|.+.. ..+.+.. .-..........++++.+.++++.++.+ ..|.+++=....+..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~---tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQT---AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEE-EcCCCCC---eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 467888999887766655 454432 1112211 0011122345678899999998876665 567665323334333
Q ss_pred eEEecc----CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe----c--CCeEEEEecCCCEEEEEcCCCc
Q 039044 82 PVTVAM----HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ----L--PDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 82 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
-..... ....+.++.+.+++..++ ++.+|.+.. ....++.-.... . ....+.+..+++ .+..+..|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~G~ 324 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-GFVLGQRGV 324 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc-eEEECCCce
Confidence 221111 123578899998877555 445676553 333333222221 1 122344444444 455566787
Q ss_pred EEEEEC
Q 039044 152 LVVFNL 157 (194)
Q Consensus 152 v~~~d~ 157 (194)
|--++-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 766653
No 440
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.87 E-value=0.41 Score=31.96 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=35.8
Q ss_pred ecCC-CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 137 TVRY-PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 137 ~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
...+ +.|+.+.....|.+|++.....+...... --++|..+.++..|+++++
T Consensus 24 c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 24 CCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred eccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEE
Confidence 3334 56656577778999999844433333222 3378999999999999986
No 441
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.86 E-value=0.62 Score=30.16 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=25.0
Q ss_pred CcEEEEEecCCC------CEEEEeeCCCeEEEEeCCC
Q 039044 90 APIKEVAWIPEM------NLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 90 ~~v~~~~~~~~~------~~l~~~~~d~~v~vwd~~~ 120 (194)
..+..++|+|.| -+|++...++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 3688888999999998663
No 442
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.86 E-value=1.8 Score=35.57 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=94.9
Q ss_pred CeeeEEEcCC--C----CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 2 SVSSLCFSPK--A----NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 2 ~v~~~~~~p~--~----~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
.|.|+.++|- + ++++.|..+..+.+.-.................-...|.-..+-.|..+|.++..||.+..|-
T Consensus 532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv 611 (1096)
T KOG1897|consen 532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFV 611 (1096)
T ss_pred eeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEE
Confidence 5889999984 2 378888887776655443332211111111112234455566666788999999999988776
Q ss_pred cCCCCceE--Ee--ccCCCcEEEEEecCCC-CEEEEeeCCCeEEEEeCCCCCceeEEecCC--eEEEEec-C-CCEEEEE
Q 039044 76 LLSGGQPV--TV--AMHDAPIKEVAWIPEM-NLLATGSWDKTLKYWDTRQPNPVHTQQLPD--RCYALTV-R-YPLMVVG 146 (194)
Q Consensus 76 ~~~~~~~~--~~--~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~-~-~~~l~~~ 146 (194)
+..+.-.. .- .-...++.--.|+..+ ..+++++ |+-..+|--+..-......... ....|+. . ...++.+
T Consensus 612 ~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~ 690 (1096)
T KOG1897|consen 612 LDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASA 690 (1096)
T ss_pred EEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEe
Confidence 54432211 11 1123455555565543 3444444 5555555443222221111111 1112222 1 2345555
Q ss_pred cCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 147 TADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 147 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
. .+.+.+.-+..-++...+. -+.....+.+++.+....+.+.
T Consensus 691 ~-~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 691 N-GGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred c-CCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEE
Confidence 5 4457777776554433332 3455667888887744444443
No 443
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.72 E-value=1.9 Score=35.12 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=72.1
Q ss_pred CeeeEEEcC-CCCEEEEeeCCCeEEEEecccCCcccccccccc---cC-------CCCCeeEEEEecCCCeEEEecCCCe
Q 039044 2 SVSSLCFSP-KANILVATSWDNQVRCWEISRGGTGVASVPKAS---IS-------HDHPVLCSTWKDDGTTVFSGGCDKQ 70 (194)
Q Consensus 2 ~v~~~~~~p-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~~-------~~~~i~~~~~~~~~~~l~~~~~d~~ 70 (194)
+..+++|+| +...||.....|...||++.............. .+ ....-..+.|.++.+.|+.++.. .
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-K 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-c
Confidence 346899999 457999999999999999922111000000000 01 11233478898888888887654 5
Q ss_pred EEEEecCCCCceE--EeccCCCcEEEEEecCC--CCEEEEeeCCCeEEEEeCCC
Q 039044 71 VKMWPLLSGGQPV--TVAMHDAPIKEVAWIPE--MNLLATGSWDKTLKYWDTRQ 120 (194)
Q Consensus 71 i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~vwd~~~ 120 (194)
+.++|+++..... ........|.++.-+|. +..|+- ....|...|+..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 8899998776532 12234567888888886 222222 236777778776
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.49 E-value=1.6 Score=33.10 Aligned_cols=108 Identities=12% Similarity=0.062 Sum_probs=59.4
Q ss_pred eeeEEEcCCCCEEEEeeCCCeEEEEecccCCc-cccccccccc-CCCCCeeEEEEecCC------CeEEEec--------
Q 039044 3 VSSLCFSPKANILVATSWDNQVRCWEISRGGT-GVASVPKASI-SHDHPVLCSTWKDDG------TTVFSGG-------- 66 (194)
Q Consensus 3 v~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~~~------~~l~~~~-------- 66 (194)
-..|+|.|++++|++--..|.|++++-..... .......... ........|+++|+- .+|+...
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 46899999998777765569999887544321 0111111111 136778999999873 2344331
Q ss_pred --CCCeEEEEecCCC--C---ceEEeccC----CCcEEEEEecCCCCEEEEeeCC
Q 039044 67 --CDKQVKMWPLLSG--G---QPVTVAMH----DAPIKEVAWIPEMNLLATGSWD 110 (194)
Q Consensus 67 --~d~~i~~~d~~~~--~---~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d 110 (194)
....|.-|.+... . ....+... ...-..|+|.|+|.++++.++.
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234544554321 1 11112111 1223568899999887766644
No 445
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.45 E-value=1.8 Score=33.61 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=82.5
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCC--CCeeEEEEecCCCeEEEec------CCCeEEEEecCCCCceEE
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHD--HPVLCSTWKDDGTTVFSGG------CDKQVKMWPLLSGGQPVT 84 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~ 84 (194)
..++.++.|+.+.-.|..+++..-. .....+. ..+.+--.--++ .++.+. .+|.|..+|.++|+.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~---~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS---KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee---cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4677778899999999887753111 1111111 111111111133 444443 268999999999987765
Q ss_pred eccCCC-------------------------------cE-EEEEecCCCCEEEEeeC-----CC-----------eEEEE
Q 039044 85 VAMHDA-------------------------------PI-KEVAWIPEMNLLATGSW-----DK-----------TLKYW 116 (194)
Q Consensus 85 ~~~~~~-------------------------------~v-~~~~~~~~~~~l~~~~~-----d~-----------~v~vw 116 (194)
+..-.. .+ ..+++.|+..++..+.. ++ +|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 432110 01 12355555455444431 11 57777
Q ss_pred eCCCCCceeEEecC----------C--eEEEEecCCC---EEEEEcCCCcEEEEECCCCCe
Q 039044 117 DTRQPNPVHTQQLP----------D--RCYALTVRYP---LMVVGTADRNLVVFNLQNPQT 162 (194)
Q Consensus 117 d~~~~~~~~~~~~~----------~--~~~~~~~~~~---~l~~~~~dg~v~~~d~~~~~~ 162 (194)
|+++++..-.++.- . .-+.+..+++ .++.+..+|.+++.|.++++.
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 88888876544331 1 1223334665 778899999999999998874
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.41 E-value=0.67 Score=28.49 Aligned_cols=118 Identities=7% Similarity=0.018 Sum_probs=73.1
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCccc--ccccccccCCCCCeeEEEEec-----CCCeEEEecCCCeEEEEec
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGV--ASVPKASISHDHPVLCSTWKD-----DGTTVFSGGCDKQVKMWPL 76 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~ 76 (194)
..-.|.....-|+.++.-|+|.|++........ .........-...|++++-.+ +...|+.|+ ...+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345677777889999999999999876543211 111222333456677776544 234677775 456999999
Q ss_pred CCCCceEEeccCCCcEEEEEecC----CCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 77 LSGGQPVTVAMHDAPIKEVAWIP----EMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
....-+. ++.-...|+++.+-. +..+++.| .+..|.-||....+..
T Consensus 81 ~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 81 ENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred ccCchhh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 8766544 233457788887743 23444444 4677777776654443
No 447
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.38 E-value=0.24 Score=23.24 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=26.1
Q ss_pred cCCCeEEEec-CCCeEEEEecCCCCceEEeccCCCcEEEEEe
Q 039044 57 DDGTTVFSGG-CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAW 97 (194)
Q Consensus 57 ~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 97 (194)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666654 5789999999887777666542 33334444
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.006 Score=45.13 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=93.8
Q ss_pred CCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEE-eeCCCeEEEEeCCCCCce--
Q 039044 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDKTLKYWDTRQPNPV-- 124 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~vwd~~~~~~~-- 124 (194)
.......|.|.+.-++.++-+..+..||- .++...+.. .+...-+++|..++..++. +-..+.+.+||+.+...-
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 33446678888877888888999999994 344443433 3455667888887776444 456789999999754321
Q ss_pred -eEEecCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 125 -HTQQLPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
........-+.|++....++.+...|.+++++..+.+.... ...|..++.++++.+.+..+..
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhh--hcccccceeEEEecccceeeec
Confidence 11111223367888888999999999999999887654322 1226677899999888766543
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=94.01 E-value=2.1 Score=32.77 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCCCeEEEecCC--CeEEEEecCCCCceEEeccCCCcEEE-EEecCCCCEEEEeeCCC---eEEEEeCCCCCceeEEec-
Q 039044 57 DDGTTVFSGGCD--KQVKMWPLLSGGQPVTVAMHDAPIKE-VAWIPEMNLLATGSWDK---TLKYWDTRQPNPVHTQQL- 129 (194)
Q Consensus 57 ~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~- 129 (194)
-++...+.|+.+ ..+..||..+++-. ....-..+... ....-+|+..+.||.++ .+..||.++.+....-..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWV-NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEE-ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 366677777754 35777886544221 11111111111 11122677777777553 467888876554332111
Q ss_pred -CC-eEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 130 -PD-RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 130 -~~-~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
+. ...+...++...+.|+ .+.+||.++.+
T Consensus 396 ~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred CccccceEEEECCEEEEECC---ceEEecCCCCc
Confidence 11 1122234565555553 47788887654
No 450
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=1.5 Score=31.00 Aligned_cols=150 Identities=14% Similarity=0.184 Sum_probs=85.9
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
.++.++ +++...+..+.-+++.|+.+...+. ......-.+--.++. -.|++...+..+.-..+.|+.+.+...
T Consensus 90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~---~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPT---LIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred heeEec--ccEEEEEcCCCceEEEeccCCCCcc---eeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence 344454 4566667777789999998875411 111111123333333 358888888877778889988765432
Q ss_pred ---EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeEEecCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 84 ---TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 84 ---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
.+......-..++. +|++...+..|+-+.+-|+..... +............++.+++....-.+--+.+-|.
T Consensus 163 lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~ 240 (370)
T COG5276 163 LAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDV 240 (370)
T ss_pred eeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEec
Confidence 22222233345555 567777788899999999976542 2233333233344444444333333334666676
Q ss_pred CCCCe
Q 039044 158 QNPQT 162 (194)
Q Consensus 158 ~~~~~ 162 (194)
.+.+.
T Consensus 241 s~~ss 245 (370)
T COG5276 241 SGPSS 245 (370)
T ss_pred CCCCC
Confidence 66553
No 451
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.85 E-value=2.2 Score=32.36 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=55.7
Q ss_pred CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeEE--------ecCCeEEEEecCC------CEEEEEc----
Q 039044 88 HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQ--------QLPDRCYALTVRY------PLMVVGT---- 147 (194)
Q Consensus 88 ~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~--------~~~~~~~~~~~~~------~~l~~~~---- 147 (194)
.-.....|+|.|++++|++--..|.|++++...+.. +..+ +.....++++|+- .+|+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 345678999999998777665569999998654432 1111 1112467888774 2444432
Q ss_pred ------CCCcEEEEECCCC-------CeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 148 ------ADRNLVVFNLQNP-------QTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 148 ------~dg~v~~~d~~~~-------~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
....|.-|.+... +..+........+.-..|+|.|||..+++
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs 162 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYT 162 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEE
Confidence 1223444444321 11111111111233468889999986664
No 452
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.74 E-value=1.6 Score=30.53 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=96.4
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceE
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPV 83 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~ 83 (194)
..++-.|||..-+++...+.|--.|-.+++. ...-.+....-..+...||+..-++=+.. .|.-.|-++.+..+
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev-----~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-----ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCce-----EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 3456666777667666666665556555542 22222344455667788888766664433 45555554443322
Q ss_pred -E--eccCCCcEEEEEecCCCCEEEEeeC---------CCeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcCCCc
Q 039044 84 -T--VAMHDAPIKEVAWIPEMNLLATGSW---------DKTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTADRN 151 (194)
Q Consensus 84 -~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 151 (194)
. ...-........|.+.|++-+++.. .+.|++|+.-.+. ....++..|+|..-++.-.+..
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------GPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------CCcceEECCCCcEEEEeccccc
Confidence 1 1223456778889999988777652 1234444433221 2246788889987777666777
Q ss_pred EEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 152 LVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 152 v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
|-..|......+........+..-+.+.-+|.|+.-++
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit 249 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT 249 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEe
Confidence 77777766543322222222333455555555555443
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.25 E-value=0.029 Score=41.75 Aligned_cols=106 Identities=10% Similarity=0.195 Sum_probs=70.8
Q ss_pred eeEEEcCCCCEEE-EeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCce
Q 039044 4 SSLCFSPKANILV-ATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQP 82 (194)
Q Consensus 4 ~~~~~~p~~~~l~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~ 82 (194)
.+++|.-++..++ .+-..+.+.+|++..... .....-..+.... +.|++....++.+...|.+.+++......+
T Consensus 78 ldm~wDkegdvlavlAek~~piylwd~n~eyt---qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 78 LDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred hhhhhccccchhhhhhhcCCCeeechhhhhhH---HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhh
Confidence 3566776665544 445578899999987532 1111111222222 788988888999989999999998776665
Q ss_pred EEeccCCCcEEEEEecCCCCEEEEeeCCCeEEE
Q 039044 83 VTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKY 115 (194)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~v 115 (194)
...-.|...++++++.+.+. .+.++.|..+.+
T Consensus 153 iv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 153 IVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred hhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 55555889999999998764 445555655443
No 454
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.15 E-value=2.8 Score=31.46 Aligned_cols=179 Identities=9% Similarity=0.031 Sum_probs=77.9
Q ss_pred CCEEEEee-CCCeEEEEecccCCccccccccccc-----C--CCCCeeEEEEecCCCeEEEec------CCCeEEEEecC
Q 039044 12 ANILVATS-WDNQVRCWEISRGGTGVASVPKASI-----S--HDHPVLCSTWKDDGTTVFSGG------CDKQVKMWPLL 77 (194)
Q Consensus 12 ~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~-----~--~~~~i~~~~~~~~~~~l~~~~------~d~~i~~~d~~ 77 (194)
.++|+..+ ..+.|.++|+.+..... ....... . .-.....+..-|+|+.++++- ..|.+.++|-+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 45555555 67889999988543211 0111110 0 111223344456888777652 22567888877
Q ss_pred CCCceEEeccC---CCcEEEEEecCCCCEEEEeeC--------------------CCeEEEEeCCCCCceeEEecCCe--
Q 039044 78 SGGQPVTVAMH---DAPIKEVAWIPEMNLLATGSW--------------------DKTLKYWDTRQPNPVHTQQLPDR-- 132 (194)
Q Consensus 78 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------d~~v~vwd~~~~~~~~~~~~~~~-- 132 (194)
+-+....+... ...-+++-|.|..+.++|+.. -.++++||+.+.+.++++.....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 66665555432 233467778888788887643 24699999999999999887531
Q ss_pred ---EEEEe--cCCCE-EEEEcCCCcEEEEEC-CCCCeeeEEe---eC---------CC-------cceeeEEEEecCCCe
Q 039044 133 ---CYALT--VRYPL-MVVGTADRNLVVFNL-QNPQTEFKRI---NS---------PL-------KYQTRCVAAFPDQQG 186 (194)
Q Consensus 133 ---~~~~~--~~~~~-l~~~~~dg~v~~~d~-~~~~~~~~~~---~~---------~~-------~~~v~~i~~~p~~~~ 186 (194)
.+.|. |+..+ ++.+...++|..|-. +.++-..+.. .. .. ..-++.|..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 23443 34444 333334555554433 4433211111 10 00 234789999999999
Q ss_pred eEEEE
Q 039044 187 FLVCI 191 (194)
Q Consensus 187 l~~~~ 191 (194)
|.++.
T Consensus 326 LYvs~ 330 (461)
T PF05694_consen 326 LYVSN 330 (461)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 98763
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.14 E-value=1.2 Score=27.36 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=67.3
Q ss_pred EEEEecCCCeEEEecCCCeEEEEecCCCC--------ceEEeccCCCcEEEEEecC-----CCCEEEEeeCCCeEEEEeC
Q 039044 52 CSTWKDDGTTVFSGGCDKQVKMWPLLSGG--------QPVTVAMHDAPIKEVAWIP-----EMNLLATGSWDKTLKYWDT 118 (194)
Q Consensus 52 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~vwd~ 118 (194)
.-+|......|++++.-|+|.|++..... .+..+ .-...|++++--+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566666678888899999999865332 22333 3566788886544 234555555 778999999
Q ss_pred CCCCceeE--EecCCeEEEEec---CCCEEEEEcCCCcEEEEECCCCC
Q 039044 119 RQPNPVHT--QQLPDRCYALTV---RYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 119 ~~~~~~~~--~~~~~~~~~~~~---~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
.+...+.. +....+++.+.. ...-++..+.+..|.-||....+
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 87765533 333445554432 22345555556778888876544
No 456
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.00 E-value=2.3 Score=30.12 Aligned_cols=191 Identities=12% Similarity=0.067 Sum_probs=100.8
Q ss_pred CeeeEEEcCCCCEEEE--eeC----------CCeEEEEecccCCcc-cccccccccCCCCCeeEEEEecCC-----CeEE
Q 039044 2 SVSSLCFSPKANILVA--TSW----------DNQVRCWEISRGGTG-VASVPKASISHDHPVLCSTWKDDG-----TTVF 63 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~--~~~----------d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~ 63 (194)
.|..+...+.+++-+. |.. .-+|.+||+.+.+.. ....+.........+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4677777777765443 321 126888898887531 111122222345678888887632 2333
Q ss_pred Ee-cCCCeEEEEecCCCCceEEeccC-------------------CCcEEEEEecC---CCCEEEEeeCCC-eEEEEe--
Q 039044 64 SG-GCDKQVKMWPLLSGGQPVTVAMH-------------------DAPIKEVAWIP---EMNLLATGSWDK-TLKYWD-- 117 (194)
Q Consensus 64 ~~-~~d~~i~~~d~~~~~~~~~~~~~-------------------~~~v~~~~~~~---~~~~l~~~~~d~-~v~vwd-- 117 (194)
.+ ...+.+.++|+.+++.-+.+..+ ...+..++.+| ++++|......+ .+.--.
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 33 34468999999887654433211 22355666655 555666554332 222221
Q ss_pred -CCCCC---------ceeEEe---cCCeEEEEecCCCEEEEEcCCCcEEEEECCCCCee--eEEe-eCCC-cceeeEEEE
Q 039044 118 -TRQPN---------PVHTQQ---LPDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTE--FKRI-NSPL-KYQTRCVAA 180 (194)
Q Consensus 118 -~~~~~---------~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~--~~~~-~~~~-~~~v~~i~~ 180 (194)
+++.. .++.+. .....++++++|..+++--+.+.|..|+..+.-.+ ...+ ..+. -..+..+++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 11111 111111 23357888999988888888999999999873211 1111 1222 356789999
Q ss_pred ec--CCCeeEEEEe
Q 039044 181 FP--DQQGFLVCIH 192 (194)
Q Consensus 181 ~p--~~~~l~~~~~ 192 (194)
.+ +|...+.+..
T Consensus 242 ~~~~~g~L~v~snr 255 (287)
T PF03022_consen 242 DPEGDGYLWVLSNR 255 (287)
T ss_dssp -T--TS-EEEEE-S
T ss_pred ccccCceEEEEECc
Confidence 99 8888777654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=4 Score=34.83 Aligned_cols=135 Identities=9% Similarity=0.135 Sum_probs=75.7
Q ss_pred eCCCeEEEEecccCCcccccccccccCCCCCeeEEEE-ec-------CCCeEEEecCCCeEEEEecCCCCc---------
Q 039044 19 SWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTW-KD-------DGTTVFSGGCDKQVKMWPLLSGGQ--------- 81 (194)
Q Consensus 19 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-------~~~~l~~~~~d~~i~~~d~~~~~~--------- 81 (194)
+-|+.+.+|+++++.. .....+-...|..+.. .| .=++++.-..--.|.++-+.-.+.
T Consensus 96 TiDn~L~lWny~~~~e-----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EeCCeEEEEEcCCCCc-----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 4578899999998542 3334444444555543 22 223333333344466654432211
Q ss_pred eEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEE--eCCCC---C-c----------------eeEE----ecCCeEEE
Q 039044 82 PVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYW--DTRQP---N-P----------------VHTQ----QLPDRCYA 135 (194)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vw--d~~~~---~-~----------------~~~~----~~~~~~~~ 135 (194)
...+......|+++....+|+.+++|- ||.|.-. ....+ + + +..+ ..+...+.
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred ceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 012223356789999888998887665 5544322 11110 0 0 0111 12345666
Q ss_pred EecCCCEEEEEcCCCcEEEEECCC
Q 039044 136 LTVRYPLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 136 ~~~~~~~l~~~~~dg~v~~~d~~~ 159 (194)
+...-..+.+-++.|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 666677899999999999999976
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.00 E-value=2.3 Score=32.10 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=64.6
Q ss_pred CCEEEEeeCCCeEEEE-ecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCC
Q 039044 12 ANILVATSWDNQVRCW-EISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDA 90 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 90 (194)
+.-++++..||-|.-| |..............+.-...++..+.-..+.+-+++-+.+|++.++.-...+.+.. ..--.
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~ 358 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQ 358 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhc
Confidence 4567788889988876 554443211111111111223333333333445677778888888877544443322 21223
Q ss_pred cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCce
Q 039044 91 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~ 124 (194)
.+.-++++|.+.++++-. .|.++++.+++..+.
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 566789999999988653 688999888765543
No 459
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.96 E-value=2.9 Score=31.18 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=94.1
Q ss_pred EEEcCCCCEEEEeeCCC-----------eEEEEecccCCcccccccccccCCCC-C-eeEEEEecCCCeEEEecC---C-
Q 039044 6 LCFSPKANILVATSWDN-----------QVRCWEISRGGTGVASVPKASISHDH-P-VLCSTWKDDGTTVFSGGC---D- 68 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d~-----------~i~i~~~~~~~~~~~~~~~~~~~~~~-~-i~~~~~~~~~~~l~~~~~---d- 68 (194)
+.|.++++.|+....+. .|+.|.+.+... .....+..... . ...+..++++++++.... +
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~---~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS---EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSE 251 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG---G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH---hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccC
Confidence 89999987766554332 367777766532 11122222222 2 568888999998774322 2
Q ss_pred CeEEEEecCCC----CceEEeccCCCcE-EEEEecCCCCEEEEeeC---CCeEEEEeCCCCCce--e-EE-ecCC--eEE
Q 039044 69 KQVKMWPLLSG----GQPVTVAMHDAPI-KEVAWIPEMNLLATGSW---DKTLKYWDTRQPNPV--H-TQ-QLPD--RCY 134 (194)
Q Consensus 69 ~~i~~~d~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~~~--~-~~-~~~~--~~~ 134 (194)
..+.+.++..+ .....+......+ ..+... .+.+++.... .+.|.-.++...... . .+ .... ...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~ 330 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE 330 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence 45788888774 2334444334344 334333 4444443322 457777888876631 1 22 1111 334
Q ss_pred EEecCCCEEEEEc-CCC--cEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 135 ALTVRYPLMVVGT-ADR--NLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 135 ~~~~~~~~l~~~~-~dg--~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.+...+.+|+... .++ .|+++++.... .......+..+.+..+...+++..+.....
T Consensus 331 ~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~-~~~~~~~p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 331 DVSLFKDYLVLSYRENGSSRLRVYDLDDGK-ESREIPLPEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETT-TE-EEEEEESSSSSEEEEEES-TT-SEEEEEEE
T ss_pred EEEEECCEEEEEEEECCccEEEEEECCCCc-EEeeecCCcceEEeccCCCCCCCEEEEEEe
Confidence 5555566655544 344 48899998222 223333344455677777777777666544
No 460
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.88 E-value=2.8 Score=30.80 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=64.3
Q ss_pred eEEEecCCCeEEEEecCCCCceEEeccCC--CcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe-EEE--
Q 039044 61 TVFSGGCDKQVKMWPLLSGGQPVTVAMHD--APIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR-CYA-- 135 (194)
Q Consensus 61 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~-- 135 (194)
.++.+..+|.|.-.|.+++..+.....-. ..+..-.+..+|+ ++.++.++.+..+|.++++.+-....... .+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45566788888889988887664332211 2222222233665 66777888999999988888877766551 111
Q ss_pred EecCCCEEEEEcCCCcEEEEECCCCCeeeE
Q 039044 136 LTVRYPLMVVGTADRNLVVFNLQNPQTEFK 165 (194)
Q Consensus 136 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~ 165 (194)
.-.....++.++.++.++..|..+++....
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 111223444455778888888887776444
No 461
>PHA02790 Kelch-like protein; Provisional
Probab=92.74 E-value=3.6 Score=31.59 Aligned_cols=99 Identities=9% Similarity=0.056 Sum_probs=49.6
Q ss_pred CCCeEEEecCCC---eEEEEecCCCCceE--EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC--
Q 039044 58 DGTTVFSGGCDK---QVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-- 130 (194)
Q Consensus 58 ~~~~l~~~~~d~---~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-- 130 (194)
+++..+.|+.++ .+..||.++.+-.. .+....... +++ .-++++.+.| |.+.+||.++.+....-..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 567777777553 46778876543211 111011111 121 2255666655 35678888776543222211
Q ss_pred C-eEEEEecCCCEEEEEcCC-----CcEEEEECCCCC
Q 039044 131 D-RCYALTVRYPLMVVGTAD-----RNLVVFNLQNPQ 161 (194)
Q Consensus 131 ~-~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~ 161 (194)
. ..-....+++..+.|+.+ ..+..||..+.+
T Consensus 437 r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 437 RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 1 122233466777777654 346677776543
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.42 E-value=3.1 Score=30.15 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred cEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc---eeEEe-c------CCeEEEEecC---CCEEEEEcCC--------
Q 039044 91 PIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP---VHTQQ-L------PDRCYALTVR---YPLMVVGTAD-------- 149 (194)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~---~~~~~-~------~~~~~~~~~~---~~~l~~~~~d-------- 149 (194)
..+.|+|.|+|+++++ ...|.|++++ ..+.. +.... . ....++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999887665 5599999999 33332 22221 1 1146788884 2344443331
Q ss_pred -CcEEEEECCCC-------CeeeEEeeC--CCcceeeEEEEecCCCeeEE
Q 039044 150 -RNLVVFNLQNP-------QTEFKRINS--PLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 150 -g~v~~~d~~~~-------~~~~~~~~~--~~~~~v~~i~~~p~~~~l~~ 189 (194)
..|.-|.+... +..+..... .....-..|.|.|||..+++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 12333443332 111111222 22344577999999965554
No 463
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.20 E-value=5.6 Score=32.54 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=83.0
Q ss_pred CCEEEEeeCCCeEEEEecccCCccccc-------ccccccCCCCCeeEEEEec--CCCeEEEecC----------CCeEE
Q 039044 12 ANILVATSWDNQVRCWEISRGGTGVAS-------VPKASISHDHPVLCSTWKD--DGTTVFSGGC----------DKQVK 72 (194)
Q Consensus 12 ~~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~----------d~~i~ 72 (194)
+..++.++.|+.+.-.|..+++..... ..............+.-.| .+..++.|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 457888888999888888877531000 0000000000000111112 1335555532 68899
Q ss_pred EEecCCCCceEEeccC---------CCc--------E-EEEEecCCCCEEEEee------------------CCCeEEEE
Q 039044 73 MWPLLSGGQPVTVAMH---------DAP--------I-KEVAWIPEMNLLATGS------------------WDKTLKYW 116 (194)
Q Consensus 73 ~~d~~~~~~~~~~~~~---------~~~--------v-~~~~~~~~~~~l~~~~------------------~d~~v~vw 116 (194)
-+|.++|+.+..+..- .+. + ..+++.++...+.... ..+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999999987765421 000 0 1233444333332211 13456667
Q ss_pred eCCCCCceeEEec-CC-----------eEEEEec-CCC---EEEEEcCCCcEEEEECCCCCeee
Q 039044 117 DTRQPNPVHTQQL-PD-----------RCYALTV-RYP---LMVVGTADRNLVVFNLQNPQTEF 164 (194)
Q Consensus 117 d~~~~~~~~~~~~-~~-----------~~~~~~~-~~~---~l~~~~~dg~v~~~d~~~~~~~~ 164 (194)
|.++++..-.++. +. .-+.+.. +++ .++.++.+|.++++|.++++...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 8888887655443 11 1223333 553 78999999999999999987544
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.11 E-value=3.9 Score=30.55 Aligned_cols=140 Identities=12% Similarity=0.044 Sum_probs=70.5
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCC-----
Q 039044 6 LCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGG----- 80 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~----- 80 (194)
+..++++.+++.+.....++-||-.... -..........++.+.+.+++..++++ ..|.+.. ....+.
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~-----W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPY-----WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcc-----eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 4455666666665543222233321110 011122335568899999998887766 5565443 333443
Q ss_pred ceEEecc--CCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEe------cCCeEEEEecCCCEEEEEcCCCcE
Q 039044 81 QPVTVAM--HDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQ------LPDRCYALTVRYPLMVVGTADRNL 152 (194)
Q Consensus 81 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~dg~v 152 (194)
...+... ....+.++.|.+++..+++ +..|.+.... ..++.-.... .+-..+.|.++++-+ ..+.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE-EEeCCcEE
Confidence 1222221 1235889999988776655 4567666553 3333222211 122345555554444 44556765
Q ss_pred EEE
Q 039044 153 VVF 155 (194)
Q Consensus 153 ~~~ 155 (194)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 443
No 465
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=91.49 E-value=1.3 Score=25.04 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCceeEEecCCeEEEEecCCCEEEEEcC-CCcEEEEECCC
Q 039044 111 KTLKYWDTRQPNPVHTQQLPDRCYALTVRYPLMVVGTA-DRNLVVFNLQN 159 (194)
Q Consensus 111 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~~~d~~~ 159 (194)
+.|..||..+.+.+..--...+.+.++|++++|+.++. .+.|++|..+.
T Consensus 36 ~~Vvyyd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34555554332222222233467888888887777665 56788887653
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.34 E-value=4.2 Score=29.41 Aligned_cols=106 Identities=14% Similarity=0.050 Sum_probs=63.7
Q ss_pred CeeeEEEcCCCCEEEEeeCCCe------EEEEecccCCc----ccccccccccCCC--------CCeeEEEEecCCCeEE
Q 039044 2 SVSSLCFSPKANILVATSWDNQ------VRCWEISRGGT----GVASVPKASISHD--------HPVLCSTWKDDGTTVF 63 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~------i~i~~~~~~~~----~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~ 63 (194)
.+..|.+.|++..+++.+.+|. +..+++..... ........+.... ...-++++.+++.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 4678899976666777677777 65555544110 0000001111111 1344788877888888
Q ss_pred EecCC------CeEEEEecCCCCceEEe---------------ccCCCcEEEEEecCCCCEEEEee
Q 039044 64 SGGCD------KQVKMWPLLSGGQPVTV---------------AMHDAPIKEVAWIPEMNLLATGS 108 (194)
Q Consensus 64 ~~~~d------~~i~~~d~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~ 108 (194)
+.-.+ ..|..++.. |.....+ ...+....+|+++|+|+.|+++.
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77777 788888866 5543333 11345688999999999666553
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.25 E-value=0.72 Score=36.88 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCc--eeEEecCCeEEEEecCCCEEEEEcCCCcEEEEEC
Q 039044 89 DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNP--VHTQQLPDRCYALTVRYPLMVVGTADRNLVVFNL 157 (194)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~d~ 157 (194)
...++++.-+|.++-++.++.||+|.+|+.-.... +.+...+...+.|...| +++.++|..+--|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence 34577888899999999999999999998754443 44444555555555554 555555665555543
No 468
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.20 E-value=5.9 Score=32.30 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred CCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEe---ccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q 039044 46 HDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTV---AMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122 (194)
Q Consensus 46 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 122 (194)
...++...++..| ++.++.+|.|.++...+....... ..|...|+++....++-+++..+.| .++.++.++-.
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl~ 700 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETLW 700 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccccC
Confidence 3456666666544 566778999999998776554443 3456679999988777666665533 45555555443
No 469
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.89 E-value=5.5 Score=29.96 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCeEEEecCCCeEEEEecCCCCc-----eEEeccCCCcEEEEEecC----CCCEEEEeeCCCeEEEEeCCCCC-------
Q 039044 59 GTTVFSGGCDKQVKMWPLLSGGQ-----PVTVAMHDAPIKEVAWIP----EMNLLATGSWDKTLKYWDTRQPN------- 122 (194)
Q Consensus 59 ~~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~v~vwd~~~~~------- 122 (194)
...|+.|+..|.++||+...+.. +.+ ..-..+|-.+..-+ .....++.-.-+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45899999999999999855431 111 22456787776542 22333344557888888873211
Q ss_pred -----ceeEEecCCe--EEEEecC-----CCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 123 -----PVHTQQLPDR--CYALTVR-----YPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 123 -----~~~~~~~~~~--~~~~~~~-----~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
.+.++..+.. .++..|- -.++.+=+.||.+.+|+-+... +...... ---.-.+.+.|..+.++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1222222322 3344442 2578888999999999987643 2222221 2223456777777777766
Q ss_pred E
Q 039044 191 I 191 (194)
Q Consensus 191 ~ 191 (194)
.
T Consensus 193 s 193 (418)
T PF14727_consen 193 S 193 (418)
T ss_pred c
Confidence 4
No 470
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.64 E-value=0.97 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=14.2
Q ss_pred CCCcEEEEEecCCCCEEEEeeC
Q 039044 88 HDAPIKEVAWIPEMNLLATGSW 109 (194)
Q Consensus 88 ~~~~v~~~~~~~~~~~l~~~~~ 109 (194)
....-....|+|||++|+.++.
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE
T ss_pred CCccccCEEEecCCCEEEEEec
Confidence 3445667788888887766554
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.19 E-value=4.6 Score=27.89 Aligned_cols=108 Identities=16% Similarity=0.351 Sum_probs=59.0
Q ss_pred EEEEecCCCeEEEecCC---CeEEEEecCCCCceEEec------cCCCcEEEEEecCCCCEEEEeeCCC-eEEEEeCCCC
Q 039044 52 CSTWKDDGTTVFSGGCD---KQVKMWPLLSGGQPVTVA------MHDAPIKEVAWIPEMNLLATGSWDK-TLKYWDTRQP 121 (194)
Q Consensus 52 ~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~-~v~vwd~~~~ 121 (194)
+-.+-+||+++.+|+.. ..+++++.........+. .....-....--|||+.|+.|+... +..+|.-+..
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccC
Confidence 34567789999888753 347777754311111111 1112222344456899988888764 3444443221
Q ss_pred --CceeE--Ee-----cCC---eEEEEecCCCEEEEEcCCCcEEEEECCCCC
Q 039044 122 --NPVHT--QQ-----LPD---RCYALTVRYPLMVVGTADRNLVVFNLQNPQ 161 (194)
Q Consensus 122 --~~~~~--~~-----~~~---~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 161 (194)
..... .. .+. ..+.+.|+|+.++.+..+. .|||..+.+
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 11111 00 011 3567789999999888765 556777654
No 472
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.02 E-value=0.96 Score=19.80 Aligned_cols=24 Identities=25% Similarity=0.244 Sum_probs=19.9
Q ss_pred eEEEecCCCeEEEEecCCCCceEE
Q 039044 61 TVFSGGCDKQVKMWPLLSGGQPVT 84 (194)
Q Consensus 61 ~l~~~~~d~~i~~~d~~~~~~~~~ 84 (194)
.++.++.+|.+..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677888899999999988877654
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.28 E-value=11 Score=30.99 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=52.2
Q ss_pred CCCeeEEEEec-CCCeEEEecCCCeEEEEecCCCC-----ceEEeccCC----------CcEEEEEecCCCCEEEEeeCC
Q 039044 47 DHPVLCSTWKD-DGTTVFSGGCDKQVKMWPLLSGG-----QPVTVAMHD----------APIKEVAWIPEMNLLATGSWD 110 (194)
Q Consensus 47 ~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d 110 (194)
..+...++|+| +.+.||.....|...||++.... .......+. ..-..+.|.++.+.|+.++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 45778999999 56789999999999999992211 111111111 2234678888877787776 5
Q ss_pred CeEEEEeCCCCCc
Q 039044 111 KTLKYWDTRQPNP 123 (194)
Q Consensus 111 ~~v~vwd~~~~~~ 123 (194)
..+.++|+++...
T Consensus 224 ~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 224 SKLMLIDFESNWQ 236 (765)
T ss_pred CceEEEECCCCCc
Confidence 6788999987655
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.09 E-value=1.4 Score=20.46 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=18.8
Q ss_pred CCCCEEEEee-CCCeEEEEeCCCCCceeEEec
Q 039044 99 PEMNLLATGS-WDKTLKYWDTRQPNPVHTQQL 129 (194)
Q Consensus 99 ~~~~~l~~~~-~d~~v~vwd~~~~~~~~~~~~ 129 (194)
|++++|+++. .++.|.++|..+.+.+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4555554443 467777788777666655544
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=9 Score=29.69 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=47.4
Q ss_pred CeeEEEEecCCCeEEEecCCCeEEEEec---------CCCCceEEe-----------ccCCCcEEEEEecCCC---CEEE
Q 039044 49 PVLCSTWKDDGTTVFSGGCDKQVKMWPL---------LSGGQPVTV-----------AMHDAPIKEVAWIPEM---NLLA 105 (194)
Q Consensus 49 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~---------~~~~~~~~~-----------~~~~~~v~~~~~~~~~---~~l~ 105 (194)
.|..+..++.|..++-.+.+|.+.++=. +.++..... ....-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4667788999999998888997665531 223222111 0112245667788854 4566
Q ss_pred EeeCCCeEEEEeCCCCCce
Q 039044 106 TGSWDKTLKYWDTRQPNPV 124 (194)
Q Consensus 106 ~~~~d~~v~vwd~~~~~~~ 124 (194)
.-+.|+.+++||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 6666888888887766555
No 476
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.92 E-value=2.6 Score=23.99 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=26.8
Q ss_pred EcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEE
Q 039044 146 GTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVC 190 (194)
Q Consensus 146 ~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~ 190 (194)
+..+|.+.-||..+.+... +..+. ...+.|+++||++.++++
T Consensus 33 ~~~~GRll~ydp~t~~~~v--l~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTV--LLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEE--EEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEE--ehhCC-CccCeEEEcCCCCEEEEE
Confidence 3456788889998876432 22222 245899999999998886
No 477
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.79 E-value=7.7 Score=28.56 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=77.6
Q ss_pred CEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCC-Cc
Q 039044 13 NILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHD-AP 91 (194)
Q Consensus 13 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~ 91 (194)
..+.++..+|.+.-.|..+....- ..........+..-.+..+|+ ++.++.++.+..+|.++++.+....... ..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W---~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKW---SYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEe---cccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 345555678877777776664210 000000112222222333565 7888889999999998888887766544 11
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecCCe---EEEEe--cCCCEEEEEcC--CCcEEEEECCCCCee
Q 039044 92 IKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLPDR---CYALT--VRYPLMVVGTA--DRNLVVFNLQNPQTE 163 (194)
Q Consensus 92 v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~~--dg~v~~~d~~~~~~~ 163 (194)
+..-..-.++ .+...+.++.+.-.|..+++..-....... ....+ .....++.+.. ++.+.-+|..++...
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111111233 334444688988888888887655444321 01001 12234445544 556666677666543
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.76 E-value=4.8 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCeEEEEecCC------CEEEEEcCCCcEEEEECCC
Q 039044 130 PDRCYALTVRY------PLMVVGTADRNLVVFNLQN 159 (194)
Q Consensus 130 ~~~~~~~~~~~------~~l~~~~~dg~v~~~d~~~ 159 (194)
....++|+|.| ..|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 45678899855 3788899999999998764
No 479
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=88.08 E-value=1.7 Score=20.03 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.0
Q ss_pred eEEEecCCCeEEEEecCCCCceEEec
Q 039044 61 TVFSGGCDKQVKMWPLLSGGQPVTVA 86 (194)
Q Consensus 61 ~l~~~~~d~~i~~~d~~~~~~~~~~~ 86 (194)
.++.++.+|.+.-.|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45667899999999999999988765
No 480
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=11 Score=29.29 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=47.5
Q ss_pred CeeeEEEcCCCCEEEEeeCCCeEEEEecc---------cCCc----ccccccccc--cCCCCCeeEEEEecCC---CeEE
Q 039044 2 SVSSLCFSPKANILVATSWDNQVRCWEIS---------RGGT----GVASVPKAS--ISHDHPVLCSTWKDDG---TTVF 63 (194)
Q Consensus 2 ~v~~~~~~p~~~~l~~~~~d~~i~i~~~~---------~~~~----~~~~~~~~~--~~~~~~i~~~~~~~~~---~~l~ 63 (194)
+|..+..++.|..++-.+.+|.+.++-.. +++. .....-..+ ....-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 36678889999999988889865544311 1110 000000000 1112235667899965 5677
Q ss_pred EecCCCeEEEEecCCCC
Q 039044 64 SGGCDKQVKMWPLLSGG 80 (194)
Q Consensus 64 ~~~~d~~i~~~d~~~~~ 80 (194)
.-+.|+.|++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 77789999999986543
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.74 E-value=8.4 Score=27.74 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=34.2
Q ss_pred CCCeEEEecC-----CCeEEEEecCCCCceE--EeccCCCcEEEEEecCCCCEEEEeeCCC----eEEEEeCCCCCc
Q 039044 58 DGTTVFSGGC-----DKQVKMWPLLSGGQPV--TVAMHDAPIKEVAWIPEMNLLATGSWDK----TLKYWDTRQPNP 123 (194)
Q Consensus 58 ~~~~l~~~~~-----d~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~vwd~~~~~~ 123 (194)
+++..+.|+. ...+..||+.+.+-.. .+.. .......+...++++.+.|+.++ .+.+||+++.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4566666664 2457888877654221 1111 11111222233567777777654 356888887553
No 482
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=14 Score=29.99 Aligned_cols=175 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEeeCC----------CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEe
Q 039044 6 LCFSPKANILVATSWD----------NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWP 75 (194)
Q Consensus 6 ~~~~p~~~~l~~~~~d----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d 75 (194)
++..|-|.-+|+.-.+ -.|+||++... ........|. ++..+.|+ +...|+....+|.+.+|+
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~-----lL~~~~w~~~-~lI~mgWs-~~eeLI~v~k~g~v~Vy~ 110 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ-----LLGRILWKHG-ELIGMGWS-DDEELICVQKDGTVHVYG 110 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecccc-----chHHHHhcCC-Ceeeeccc-CCceEEEEeccceEEEee
Q ss_pred cCCCCceE---EeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC-----ceeEEecCCeEEEEecC---CCEEE
Q 039044 76 LLSGGQPV---TVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN-----PVHTQQLPDRCYALTVR---YPLMV 144 (194)
Q Consensus 76 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~---~~~l~ 144 (194)
+-...... -.......|..+.+..+|-.+++.+ +..+.+-+..... .+.-...+..++.+.++ ...++
T Consensus 111 ~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~-g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll 189 (829)
T KOG2280|consen 111 LLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS-GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL 189 (829)
T ss_pred cchhhhcccccccccccCceeEEEEecCceEEEecC-CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE
Q ss_pred EEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEE
Q 039044 145 VGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLV 189 (194)
Q Consensus 145 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~ 189 (194)
-....--..++..............+ ...+..+..||++++|+.
T Consensus 190 ~v~~~v~~~~~q~~~~~~q~~~~~~~-~~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 190 DVDVAVGLHICQVEESRVQLHALSWP-NSSVVKISVSPNRRFLAL 233 (829)
T ss_pred eechhhhhcccceecccccccccCCC-CceEEEEEEcCCcceEEE
No 483
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.53 E-value=1.4 Score=18.73 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=19.8
Q ss_pred CCeeeEEEcCCCCEEEEeeCCCeEEEEe
Q 039044 1 DSVSSLCFSPKANILVATSWDNQVRCWE 28 (194)
Q Consensus 1 ~~v~~~~~~p~~~~l~~~~~d~~i~i~~ 28 (194)
+.|.+++..+ .+++++...+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3577888765 5788888888999874
No 484
>PLN02153 epithiospecifier protein
Probab=87.40 E-value=9.2 Score=27.81 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=28.4
Q ss_pred CeEEEEeCCCCCceeEEe---cCC---eEEEEecCCCEEEEEcCC--------------CcEEEEECCCCC
Q 039044 111 KTLKYWDTRQPNPVHTQQ---LPD---RCYALTVRYPLMVVGTAD--------------RNLVVFNLQNPQ 161 (194)
Q Consensus 111 ~~v~vwd~~~~~~~~~~~---~~~---~~~~~~~~~~~l~~~~~d--------------g~v~~~d~~~~~ 161 (194)
..+.+||+.+.+...... .+. ...+...++..++.|+.. ..+..||+.+.+
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 468889988766443211 111 122333456677777742 257788887654
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.33 E-value=8.4 Score=27.31 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=37.6
Q ss_pred CeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEee------CCCeEEEEeCCCCCc
Q 039044 69 KQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGS------WDKTLKYWDTRQPNP 123 (194)
Q Consensus 69 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~vwd~~~~~~ 123 (194)
..|++||..+.+-...-..-.+.|+++.|..+.+.++.|. ....+..||..+...
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 4589999876544333334567899999986666666654 345688899887654
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=87.26 E-value=8 Score=26.96 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCcEEEEEecC----C---CCEEEEeeCCCeEEEEeCCCCCceeEEecCCeEEEEecCC------CEEEEEcCCCcEEEE
Q 039044 89 DAPIKEVAWIP----E---MNLLATGSWDKTLKYWDTRQPNPVHTQQLPDRCYALTVRY------PLMVVGTADRNLVVF 155 (194)
Q Consensus 89 ~~~v~~~~~~~----~---~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~dg~v~~~ 155 (194)
...|+||+--. + -..|+.|..+|.|.|.|......+.....+..-..+...| -.++.++.||.|++.
T Consensus 176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 34677776543 1 2468889999999999999888888887765433333222 247778889988764
No 487
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=86.82 E-value=1.7 Score=20.15 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=11.2
Q ss_pred CCEEEEEcCCCcEEEEECC
Q 039044 140 YPLMVVGTADRNLVVFNLQ 158 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~ 158 (194)
+..++.++.||.++.+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 4456666666666666654
No 488
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=86.81 E-value=1.8 Score=35.69 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=52.5
Q ss_pred eEEEcCCCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEecCCCeEEEEecCCC
Q 039044 5 SLCFSPKANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSG 79 (194)
Q Consensus 5 ~~~~~p~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 79 (194)
|.........+++|...|.+.+++.................+..+..-+.|.|+++.++.+-..|...+|....+
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 344445677899999999999998876432211112222334447788899999999999988899999976543
No 489
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=86.77 E-value=14 Score=30.71 Aligned_cols=76 Identities=4% Similarity=-0.043 Sum_probs=48.5
Q ss_pred CCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEE-eeCCC-----eEEEEeCCCCC-ceeEEec---CCeEEEE
Q 039044 67 CDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLAT-GSWDK-----TLKYWDTRQPN-PVHTQQL---PDRCYAL 136 (194)
Q Consensus 67 ~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~v~vwd~~~~~-~~~~~~~---~~~~~~~ 136 (194)
..+.+.+-|.........-..+..+|.+-+|+|||++|+. .+.++ .|.+-|+++.. -+.++.. .+....+
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv 406 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRV 406 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEe
Confidence 3357888887765554431346788999999999999998 55444 58888887643 2222222 2344555
Q ss_pred ecCCCE
Q 039044 137 TVRYPL 142 (194)
Q Consensus 137 ~~~~~~ 142 (194)
..+|..
T Consensus 407 ~e~gdt 412 (912)
T TIGR02171 407 LENGDT 412 (912)
T ss_pred cCCCCe
Confidence 566653
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.73 E-value=8.4 Score=26.66 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=63.0
Q ss_pred EEcCCCCEEEEeeC-C--CeEEEEeccc-CCcccccccccccCCCCCeeEEEEecCCCeEEEecCCC-eEEEEecCCC-C
Q 039044 7 CFSPKANILVATSW-D--NQVRCWEISR-GGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGGCDK-QVKMWPLLSG-G 80 (194)
Q Consensus 7 ~~~p~~~~l~~~~~-d--~~i~i~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~-~ 80 (194)
++-|||+++.+|+. + ..+++++... .................---...--|||+.|+.|+.+. ....|.-+.. .
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Confidence 45678999998875 2 3478887654 11100000111112233334455567899998888774 3455554221 1
Q ss_pred ceEEe--ccC------CCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE
Q 039044 81 QPVTV--AMH------DAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 127 (194)
Q Consensus 81 ~~~~~--~~~------~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 127 (194)
....+ ... ..----+...|+|++|+.+..+ -.+||..+.+.++.+
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 11111 110 1111245667899999888754 456688777655544
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.34 E-value=12 Score=27.91 Aligned_cols=175 Identities=9% Similarity=0.077 Sum_probs=96.4
Q ss_pred CCCEEEEeeCCCeEEEEecccCCcccccccccccCCCCCeeEEEEe----cCCCe--EEEec-CC---CeEEEEecCCC-
Q 039044 11 KANILVATSWDNQVRCWEISRGGTGVASVPKASISHDHPVLCSTWK----DDGTT--VFSGG-CD---KQVKMWPLLSG- 79 (194)
Q Consensus 11 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~--l~~~~-~d---~~i~~~d~~~~- 79 (194)
...+++...+++-+.+||+..... ..+ ..+.++.+... -.++. |+.++ ++ ..|++|.+...
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~l------q~~--~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKEL------QSL--PVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EE------EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred ccceEEEEeCCCCEEEEcCCCcEE------Eee--cCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 456788888889999999987632 111 12334444332 13432 33443 32 47999987632
Q ss_pred CceEEecc-------CCCcEEEEEec--C-CCC-EEEEeeCCCeEEEEeCC---CC----CceeEEecCC--eEEEEecC
Q 039044 80 GQPVTVAM-------HDAPIKEVAWI--P-EMN-LLATGSWDKTLKYWDTR---QP----NPVHTQQLPD--RCYALTVR 139 (194)
Q Consensus 80 ~~~~~~~~-------~~~~v~~~~~~--~-~~~-~l~~~~~d~~v~vwd~~---~~----~~~~~~~~~~--~~~~~~~~ 139 (194)
..+..+.. ....++.+++. | +|. +.+....+|.+..|-+. .+ +.++++.... ..+.....
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 22333221 12346777774 3 354 56667788988887664 22 2456665543 45666777
Q ss_pred CCEEEEEcCCCcEEEEECCCCC--ee--eEEe-eCCCcceeeEEEEec--CC-CeeEEEEee
Q 039044 140 YPLMVVGTADRNLVVFNLQNPQ--TE--FKRI-NSPLKYQTRCVAAFP--DQ-QGFLVCIHL 193 (194)
Q Consensus 140 ~~~l~~~~~dg~v~~~d~~~~~--~~--~~~~-~~~~~~~v~~i~~~p--~~-~~l~~~~~~ 193 (194)
..+|+.+-++.-|.-|+.+... .. .... .......+..|++-+ ++ .+|++++++
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 7799999999888888876322 11 1111 123455677887753 44 477777765
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.28 E-value=8.2 Score=26.09 Aligned_cols=54 Identities=7% Similarity=-0.101 Sum_probs=33.8
Q ss_pred cCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCC
Q 039044 66 GCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPN 122 (194)
Q Consensus 66 ~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~ 122 (194)
-.+|.-..+|.++-+.+.++. .++.-..++- ++.-|+.+....+++.-|.++-.
T Consensus 108 w~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence 357778888988877766654 2344455543 55556666556667766665543
No 493
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.16 E-value=11 Score=27.28 Aligned_cols=82 Identities=18% Similarity=0.073 Sum_probs=52.8
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCCc--eeEEecCCeEEEEecCCCEEEEEcCC--------------------CcEEEEEC
Q 039044 100 EMNLLATGSWDKTLKYWDTRQPNP--VHTQQLPDRCYALTVRYPLMVVGTAD--------------------RNLVVFNL 157 (194)
Q Consensus 100 ~~~~l~~~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d--------------------g~v~~~d~ 157 (194)
+|++.++-+..|.+.-+|..+++. +.......+.++|. |.+++++.+. .-|.+.|+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl 289 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDL 289 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEEC
Confidence 567777777889999999887754 44444445566665 7776665321 23778899
Q ss_pred CCCCeeeEEeeCCCcceeeEEEEecC
Q 039044 158 QNPQTEFKRINSPLKYQTRCVAAFPD 183 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~v~~i~~~p~ 183 (194)
+++....-....+.-..+..+++-|.
T Consensus 290 ~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 290 NSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCCCEEEEEEeCCceeEEEEEEEecC
Confidence 88875433333334456777777775
No 494
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=85.49 E-value=20 Score=29.78 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=27.8
Q ss_pred CEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEec
Q 039044 141 PLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFP 182 (194)
Q Consensus 141 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p 182 (194)
..++.-.+-|.|+.|+-.+.+..........-..+..|+|..
T Consensus 399 ~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~~isdIa~~~ 440 (1267)
T KOG0783|consen 399 NKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIFEISDIAWTA 440 (1267)
T ss_pred hheeeeccCCeEEEEecCCCceeeeecccceeeehhhhhhcc
Confidence 457777888999999977655433344444445566777766
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=85.14 E-value=13 Score=30.93 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=49.1
Q ss_pred CeEEEEecccCCcccccccccc-cCCCCCeeEEEEecCCCeEEE-ecCCC-----eEEEEecCCCC-ceEEeccCCCcEE
Q 039044 22 NQVRCWEISRGGTGVASVPKAS-ISHDHPVLCSTWKDDGTTVFS-GGCDK-----QVKMWPLLSGG-QPVTVAMHDAPIK 93 (194)
Q Consensus 22 ~~i~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~-~~~d~-----~i~~~d~~~~~-~~~~~~~~~~~v~ 93 (194)
+.|.+-|...... ... ..+..++..-+|+|||+.|+- .+..+ .|.+-++.+.. .+.++......|.
T Consensus 329 ~~L~~~D~dG~n~------~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaip 402 (912)
T TIGR02171 329 GNLAYIDYTKGAS------RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIP 402 (912)
T ss_pred CeEEEEecCCCCc------eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccccc
Confidence 4677777766532 223 456788999999999999886 44333 48888887643 3345555555565
Q ss_pred EEEecCCCCE
Q 039044 94 EVAWIPEMNL 103 (194)
Q Consensus 94 ~~~~~~~~~~ 103 (194)
.-...++|..
T Consensus 403 rwrv~e~gdt 412 (912)
T TIGR02171 403 RWRVLENGDT 412 (912)
T ss_pred ceEecCCCCe
Confidence 5555555543
No 496
>PRK13615 lipoprotein LpqB; Provisional
Probab=85.12 E-value=17 Score=28.69 Aligned_cols=97 Identities=9% Similarity=-0.069 Sum_probs=56.5
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEEecC-CeEEEEecCCCEEEEEcCCCcEEEEECCC-CCeeeEEeeCC
Q 039044 93 KEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQQLP-DRCYALTVRYPLMVVGTADRNLVVFNLQN-PQTEFKRINSP 170 (194)
Q Consensus 93 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~ 170 (194)
.+++.++++..++....++.+.++...... ....... ...-+|.+++ ++-+.-.+...++..... +........-.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~-~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~~ 414 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA-VLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSWT 414 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc-eeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecccc
Confidence 678999999998888878888888665221 1112221 2344566665 555544333344444332 22111112222
Q ss_pred CcceeeEEEEecCCCeeEEEE
Q 039044 171 LKYQTRCVAAFPDQQGFLVCI 191 (194)
Q Consensus 171 ~~~~v~~i~~~p~~~~l~~~~ 191 (194)
...+|..+..|+||-.+++=+
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~ 435 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQL 435 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEE
Confidence 346799999999998877644
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.76 E-value=21 Score=30.51 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.7
Q ss_pred eeEEEcCCCCEEEEeeCCCeEEEEecc
Q 039044 4 SSLCFSPKANILVATSWDNQVRCWEIS 30 (194)
Q Consensus 4 ~~~~~~p~~~~l~~~~~d~~i~i~~~~ 30 (194)
..++|+|...++|.++..|.|++|-..
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred cceeeccccceEEEEEecccEEEeccc
Confidence 467899999999999999999998764
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.50 E-value=13 Score=26.77 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=68.2
Q ss_pred CeeEEEEecCCCeEEEecCCCeEEEEecC------CCCc-eEEecc-----CCCcEEEEEecCCC------------CEE
Q 039044 49 PVLCSTWKDDGTTVFSGGCDKQVKMWPLL------SGGQ-PVTVAM-----HDAPIKEVAWIPEM------------NLL 104 (194)
Q Consensus 49 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~------------~~l 104 (194)
.-..|+++|.+.+.++....+...+||.. ..+. +..+.. .....+.+.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999988888888999999986 1222 223331 23456777777432 236
Q ss_pred EEeeCCCeEEEEeCCCCCc-----eeEEecC--C---eEEEEecC--CCEEEEEc-CCCcEEEEECC
Q 039044 105 ATGSWDKTLKYWDTRQPNP-----VHTQQLP--D---RCYALTVR--YPLMVVGT-ADRNLVVFNLQ 158 (194)
Q Consensus 105 ~~~~~d~~v~vwd~~~~~~-----~~~~~~~--~---~~~~~~~~--~~~l~~~~-~dg~v~~~d~~ 158 (194)
+.++.||+|.-|...-... ...+... . +-+++... +.+|+.+. .+++|.+||-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 7788999999998532222 1112111 1 34555543 45555544 47889998754
No 499
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.31 E-value=12 Score=26.46 Aligned_cols=140 Identities=12% Similarity=0.037 Sum_probs=84.4
Q ss_pred CCeeEEEEecCCCeEEEecCCCeEEEEecCCCCceEEeccCCCcEEEEEecCCCCEEEEeeCCCeEEEEeCCCCCceeEE
Q 039044 48 HPVLCSTWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKEVAWIPEMNLLATGSWDKTLKYWDTRQPNPVHTQ 127 (194)
Q Consensus 48 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 127 (194)
..-..++-.|||..-+++...+.|--.|-.+++...--.+.......+..-|||..-++-+.. -|.-.|.++.+ +.++
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eEEe
Confidence 345567788899888888888888888888887765444445556677788887765543322 55555654443 2222
Q ss_pred ec-------CCeEEEEecCCCEEEEEcCCCcEEEEECCCCCeeeEEeeCCCcceeeEEEEecCCCeeEEEEe
Q 039044 128 QL-------PDRCYALTVRYPLMVVGTADRNLVVFNLQNPQTEFKRINSPLKYQTRCVAAFPDQQGFLVCIH 192 (194)
Q Consensus 128 ~~-------~~~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~~~ 192 (194)
.. ......|.+.|..-+++.. |.-- .++-.....+....+.......|+..|+|....+...
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yG--rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYG--RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccce--ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc
Confidence 22 2246788888887777763 2111 1111122233334444455677788888887766543
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.63 E-value=13 Score=26.34 Aligned_cols=93 Identities=9% Similarity=0.167 Sum_probs=55.7
Q ss_pred CeEEEEecccCCcccccccccccCCCCCeeEEEEecCCCeEEEec------CCCeEEEEecCCCCceEEecc-----CCC
Q 039044 22 NQVRCWEISRGGTGVASVPKASISHDHPVLCSTWKDDGTTVFSGG------CDKQVKMWPLLSGGQPVTVAM-----HDA 90 (194)
Q Consensus 22 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~-----~~~ 90 (194)
..|++||.....- ...-.+-.+.|..+.|..+.+.++.|. ....+..||..+..- ..+.. -++
T Consensus 16 ~~lC~yd~~~~qW-----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipg 89 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPG 89 (281)
T ss_pred CEEEEEECCCCEe-----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCC
Confidence 3599999877632 222223567899999997777777664 355688899876532 22222 246
Q ss_pred cEEEEEecC-CCC-EEEEee-C--CCeEEEEeCCC
Q 039044 91 PIKEVAWIP-EMN-LLATGS-W--DKTLKYWDTRQ 120 (194)
Q Consensus 91 ~v~~~~~~~-~~~-~l~~~~-~--d~~v~vwd~~~ 120 (194)
+|..+.+.. ++. ..+.|. . +..|..||=.+
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 788887744 333 333332 2 33566776443
Done!