Query 039045
Match_columns 295
No_of_seqs 376 out of 3037
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02694 serine O-acetyltransf 100.0 1.4E-63 3.1E-68 452.0 31.8 293 1-295 2-294 (294)
2 PLN02357 serine acetyltransfer 100.0 3.1E-60 6.8E-65 440.8 28.7 274 22-295 87-360 (360)
3 KOG4750 Serine O-acetyltransfe 100.0 1.2E-59 2.6E-64 404.4 15.6 255 28-287 15-269 (269)
4 PLN02739 serine acetyltransfer 100.0 5.9E-58 1.3E-62 422.6 26.2 255 26-285 70-324 (355)
5 PRK11132 cysE serine acetyltra 100.0 1.3E-54 2.7E-59 393.3 27.8 260 23-287 3-262 (273)
6 COG1045 CysE Serine acetyltran 100.0 2.9E-44 6.3E-49 305.8 17.6 169 100-268 6-174 (194)
7 TIGR01172 cysE serine O-acetyl 100.0 1.2E-30 2.6E-35 221.4 17.2 161 102-262 2-162 (162)
8 PF06426 SATase_N: Serine acet 99.9 1.5E-22 3.2E-27 159.5 8.8 105 29-133 1-105 (105)
9 PRK10191 putative acyl transfe 99.9 1.1E-21 2.4E-26 163.3 12.7 108 156-264 36-143 (146)
10 PRK09527 lacA galactoside O-ac 99.9 1E-20 2.2E-25 165.8 16.3 111 156-268 64-186 (203)
11 COG1045 CysE Serine acetyltran 99.9 2.6E-21 5.6E-26 165.3 12.1 146 29-233 3-157 (194)
12 PRK10092 maltose O-acetyltrans 99.9 1.3E-20 2.9E-25 162.8 15.9 109 156-266 62-182 (183)
13 PLN02739 serine acetyltransfer 99.8 6.1E-21 1.3E-25 177.0 12.3 180 8-250 120-311 (355)
14 PLN02694 serine O-acetyltransf 99.8 4.3E-21 9.3E-26 174.8 10.2 170 8-239 75-254 (294)
15 cd03357 LbH_MAT_GAT Maltose O- 99.8 8.2E-19 1.8E-23 149.7 14.5 104 161-264 62-169 (169)
16 PRK10502 putative acyl transfe 99.8 8.9E-19 1.9E-23 151.3 14.2 57 212-268 123-179 (182)
17 PLN02357 serine acetyltransfer 99.8 5.7E-19 1.2E-23 165.0 12.2 179 8-248 141-330 (360)
18 cd05825 LbH_wcaF_like wcaF-lik 99.8 3.1E-18 6.8E-23 135.3 12.7 106 159-264 1-107 (107)
19 COG0110 WbbJ Acetyltransferase 99.8 1.8E-18 3.8E-23 149.4 10.8 109 161-269 67-180 (190)
20 PRK11132 cysE serine acetyltra 99.8 1.6E-18 3.4E-23 157.7 8.3 190 12-267 60-259 (273)
21 PRK09677 putative lipopolysacc 99.7 2.8E-17 6.1E-22 143.1 13.2 109 161-269 65-186 (192)
22 cd03354 LbH_SAT Serine acetylt 99.7 6.8E-17 1.5E-21 126.1 13.2 100 161-260 2-101 (101)
23 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 3.2E-17 7E-22 146.6 11.9 59 212-270 159-217 (231)
24 KOG4750 Serine O-acetyltransfe 99.7 8.4E-18 1.8E-22 145.7 5.6 174 15-249 70-253 (269)
25 cd03358 LbH_WxcM_N_like WcxM-l 99.7 1.6E-16 3.5E-21 126.9 11.9 103 161-265 10-119 (119)
26 cd03349 LbH_XAT Xenobiotic acy 99.7 2.3E-16 5E-21 131.5 12.4 106 162-268 2-128 (145)
27 PRK13627 carnitine operon prot 99.7 4.5E-16 9.8E-21 135.9 12.6 104 162-268 29-145 (196)
28 PRK12461 UDP-N-acetylglucosami 99.7 2.4E-16 5.2E-21 143.0 10.5 106 161-268 77-192 (255)
29 cd03350 LbH_THP_succinylT 2,3, 99.7 8.4E-16 1.8E-20 126.9 12.5 99 161-261 25-139 (139)
30 PRK05289 UDP-N-acetylglucosami 99.7 2.8E-16 6.1E-21 143.2 10.1 107 161-267 80-195 (262)
31 COG0663 PaaY Carbonic anhydras 99.7 3E-16 6.6E-21 132.8 9.4 99 162-269 30-147 (176)
32 cd04646 LbH_Dynactin_6 Dynacti 99.7 5.6E-16 1.2E-20 131.7 10.7 123 161-290 17-155 (164)
33 cd03360 LbH_AT_putative Putati 99.6 2.3E-15 5E-20 128.7 12.4 48 213-260 150-197 (197)
34 PLN02296 carbonate dehydratase 99.6 3.1E-15 6.8E-20 136.4 13.3 104 162-268 71-193 (269)
35 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 2.2E-15 4.8E-20 136.2 12.1 80 181-260 141-237 (269)
36 TIGR03308 phn_thr-fam phosphon 99.6 2.8E-15 6.1E-20 131.8 11.7 56 212-267 107-162 (204)
37 cd04647 LbH_MAT_like Maltose O 99.6 5.3E-15 1.2E-19 116.1 11.9 103 162-264 2-109 (109)
38 cd04745 LbH_paaY_like paaY-lik 99.6 6.7E-15 1.5E-19 123.7 13.0 106 161-269 18-136 (155)
39 TIGR03570 NeuD_NnaD sugar O-ac 99.6 4.4E-15 9.6E-20 128.3 12.1 49 213-261 153-201 (201)
40 TIGR01852 lipid_A_lpxA acyl-[a 99.6 6.1E-15 1.3E-19 133.7 12.6 106 161-266 76-190 (254)
41 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 3E-15 6.5E-20 140.3 10.5 106 162-267 196-307 (324)
42 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 1E-14 2.3E-19 132.2 13.5 107 161-267 77-192 (254)
43 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 1.2E-14 2.7E-19 132.2 12.9 88 181-268 144-258 (272)
44 cd03352 LbH_LpxD UDP-3-O-acyl- 99.6 1.1E-14 2.4E-19 127.4 11.5 106 161-266 92-203 (205)
45 TIGR02287 PaaY phenylacetic ac 99.6 1.9E-14 4.1E-19 125.3 12.3 108 161-268 26-143 (192)
46 PLN02472 uncharacterized prote 99.6 2.5E-14 5.3E-19 128.9 11.8 104 162-268 78-200 (246)
47 TIGR01172 cysE serine O-acetyl 99.5 2.1E-14 4.5E-19 121.8 9.5 146 33-240 1-156 (162)
48 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 2.6E-14 5.6E-19 135.0 10.7 106 162-267 204-316 (343)
49 cd04650 LbH_FBP Ferripyochelin 99.5 7.2E-14 1.6E-18 117.5 11.8 108 161-268 18-135 (154)
50 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.5E-13 3.3E-18 116.3 12.1 111 159-269 19-147 (161)
51 PRK14360 glmU bifunctional N-a 99.5 1.7E-13 3.6E-18 133.4 11.9 55 213-267 390-444 (450)
52 TIGR01173 glmU UDP-N-acetylglu 99.5 2.7E-13 5.9E-18 131.8 11.9 55 213-267 390-444 (451)
53 TIGR02353 NRPS_term_dom non-ri 99.5 4.2E-13 9.1E-18 137.3 13.4 105 160-268 111-217 (695)
54 TIGR03570 NeuD_NnaD sugar O-ac 99.4 1E-12 2.2E-17 113.5 12.5 107 161-278 93-201 (201)
55 PRK14357 glmU bifunctional N-a 99.4 9.7E-13 2.1E-17 128.1 12.9 55 213-267 383-437 (448)
56 COG1207 GlmU N-acetylglucosami 99.4 1.3E-12 2.7E-17 123.6 12.4 54 212-265 396-449 (460)
57 cd03360 LbH_AT_putative Putati 99.4 2E-12 4.3E-17 110.4 12.7 105 162-277 91-197 (197)
58 COG2171 DapD Tetrahydrodipicol 99.4 2.9E-13 6.4E-18 121.0 7.5 78 181-258 150-227 (271)
59 cd04645 LbH_gamma_CA_like Gamm 99.4 1.6E-12 3.5E-17 108.9 11.5 106 161-269 17-135 (153)
60 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 8.4E-13 1.8E-17 118.2 10.3 115 162-284 87-214 (231)
61 COG1043 LpxA Acyl-[acyl carrie 99.4 2.8E-13 6E-18 119.2 6.5 112 159-278 79-207 (260)
62 PRK14353 glmU bifunctional N-a 99.4 1.9E-12 4E-17 126.0 13.0 55 213-267 380-434 (446)
63 PRK09451 glmU bifunctional N-a 99.4 1.3E-12 2.9E-17 127.6 11.7 56 213-268 394-450 (456)
64 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 2.1E-12 4.5E-17 112.1 11.7 48 213-260 144-191 (193)
65 PRK14352 glmU bifunctional N-a 99.4 2.2E-12 4.9E-17 127.0 12.5 55 213-267 399-454 (482)
66 PRK14359 glmU bifunctional N-a 99.4 2.1E-12 4.5E-17 125.0 12.0 54 213-266 367-421 (430)
67 cd04649 LbH_THP_succinylT_puta 99.4 3E-12 6.6E-17 105.8 9.1 37 212-250 72-108 (147)
68 cd00208 LbetaH Left-handed par 99.4 6.3E-12 1.4E-16 92.1 9.6 77 169-247 2-78 (78)
69 PRK14355 glmU bifunctional N-a 99.3 6.5E-12 1.4E-16 122.9 12.3 53 213-265 397-449 (459)
70 cd03358 LbH_WxcM_N_like WcxM-l 99.3 1.3E-11 2.9E-16 98.3 10.7 92 181-281 10-118 (119)
71 TIGR03535 DapD_actino 2,3,4,5- 99.3 7.9E-12 1.7E-16 114.1 10.3 89 161-251 165-261 (319)
72 PRK09527 lacA galactoside O-ac 99.3 1.2E-11 2.6E-16 108.5 11.0 109 164-284 58-185 (203)
73 TIGR02353 NRPS_term_dom non-ri 99.3 8.1E-12 1.8E-16 127.9 11.4 99 159-261 595-695 (695)
74 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 5.4E-12 1.2E-16 116.6 8.4 106 161-266 202-313 (338)
75 cd03350 LbH_THP_succinylT 2,3, 99.3 4.7E-11 1E-15 98.5 12.3 95 161-265 7-110 (139)
76 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 3.8E-11 8.3E-16 105.0 12.0 70 213-283 132-203 (205)
77 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 1.2E-11 2.7E-16 114.3 9.2 79 162-250 106-184 (338)
78 PRK14354 glmU bifunctional N-a 99.3 2.5E-11 5.3E-16 118.5 11.6 52 213-264 393-444 (458)
79 PRK10502 putative acyl transfe 99.3 2.4E-11 5.1E-16 105.0 9.8 120 153-284 43-178 (182)
80 PRK14356 glmU bifunctional N-a 99.3 3.5E-11 7.5E-16 117.5 12.2 55 213-267 398-452 (456)
81 cd03357 LbH_MAT_GAT Maltose O- 99.3 8.9E-11 1.9E-15 100.1 12.7 105 164-280 45-168 (169)
82 TIGR01852 lipid_A_lpxA acyl-[a 99.2 7.4E-11 1.6E-15 107.0 12.5 70 212-282 118-189 (254)
83 PRK10092 maltose O-acetyltrans 99.2 9.6E-11 2.1E-15 101.3 12.5 95 183-283 69-182 (183)
84 PRK09677 putative lipopolysacc 99.2 1.1E-10 2.4E-15 101.6 12.8 116 159-284 41-184 (192)
85 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 5.1E-11 1.1E-15 112.6 11.1 37 164-202 109-145 (343)
86 PRK13627 carnitine operon prot 99.2 1E-10 2.3E-15 102.2 11.7 115 161-283 16-143 (196)
87 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 7.1E-11 1.5E-15 107.1 11.0 37 213-249 77-120 (254)
88 PRK12461 UDP-N-acetylglucosami 99.2 8.7E-11 1.9E-15 106.7 11.2 68 212-280 118-187 (255)
89 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 1E-10 2.2E-15 109.8 11.9 76 162-247 98-173 (324)
90 PRK05289 UDP-N-acetylglucosami 99.2 9.5E-11 2.1E-15 106.8 11.3 37 213-249 80-123 (262)
91 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.9E-10 4E-15 104.3 12.1 92 161-263 106-206 (269)
92 cd04745 LbH_paaY_like paaY-lik 99.2 2.7E-10 5.8E-15 95.7 11.7 112 164-283 15-133 (155)
93 cd04646 LbH_Dynactin_6 Dynacti 99.2 2.6E-10 5.7E-15 96.9 11.4 120 162-284 12-139 (164)
94 TIGR03308 phn_thr-fam phosphon 99.2 2.6E-10 5.7E-15 100.3 10.9 55 230-284 107-162 (204)
95 cd00710 LbH_gamma_CA Gamma car 99.2 5.5E-10 1.2E-14 95.1 12.3 95 161-256 20-125 (167)
96 PRK14358 glmU bifunctional N-a 99.1 2.2E-10 4.7E-15 113.0 11.2 47 212-258 398-444 (481)
97 PLN02472 uncharacterized prote 99.1 4.8E-10 1E-14 101.2 11.2 113 167-283 77-198 (246)
98 PRK14353 glmU bifunctional N-a 99.1 4.4E-10 9.4E-15 109.4 11.8 68 213-280 355-430 (446)
99 cd04649 LbH_THP_succinylT_puta 99.1 3.1E-10 6.7E-15 93.9 9.0 94 161-267 7-108 (147)
100 PLN02296 carbonate dehydratase 99.1 5.9E-10 1.3E-14 101.8 11.7 113 168-284 71-192 (269)
101 cd00710 LbH_gamma_CA Gamma car 99.1 5.5E-10 1.2E-14 95.0 10.5 74 188-265 43-116 (167)
102 TIGR02287 PaaY phenylacetic ac 99.1 6.8E-10 1.5E-14 96.7 10.4 90 188-283 48-141 (192)
103 cd05636 LbH_G1P_TT_C_like Puta 99.1 9.1E-10 2E-14 93.1 10.8 19 231-249 129-147 (163)
104 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 3.1E-10 6.6E-15 104.3 8.2 60 188-249 225-284 (341)
105 cd04650 LbH_FBP Ferripyochelin 99.0 2.2E-09 4.9E-14 90.2 11.3 112 164-283 15-133 (154)
106 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 2.1E-09 4.5E-14 98.2 11.0 78 161-249 109-194 (272)
107 KOG1461 Translation initiation 99.0 6.4E-10 1.4E-14 109.3 7.0 26 118-143 272-297 (673)
108 PRK10191 putative acyl transfe 99.0 2.5E-09 5.3E-14 89.2 9.5 80 155-245 55-141 (146)
109 PRK14355 glmU bifunctional N-a 99.0 4.8E-09 1E-13 102.7 12.8 74 162-247 263-336 (459)
110 PRK14360 glmU bifunctional N-a 99.0 4.5E-09 9.8E-14 102.4 11.8 69 213-281 365-441 (450)
111 cd05787 LbH_eIF2B_epsilon eIF- 99.0 5.3E-09 1.1E-13 77.1 9.4 72 164-248 2-73 (79)
112 COG0663 PaaY Carbonic anhydras 99.0 4.1E-09 9E-14 89.5 9.8 109 169-284 31-145 (176)
113 PRK14352 glmU bifunctional N-a 98.9 9.1E-09 2E-13 101.4 12.3 71 213-283 374-453 (482)
114 TIGR01173 glmU UDP-N-acetylglu 98.9 5.8E-09 1.3E-13 101.4 10.8 67 214-280 366-440 (451)
115 cd04645 LbH_gamma_CA_like Gamm 98.9 9.7E-09 2.1E-13 85.9 10.3 107 168-282 18-131 (153)
116 cd03353 LbH_GlmU_C N-acetyl-gl 98.9 1E-08 2.3E-13 88.8 10.8 84 161-246 9-100 (193)
117 cd05636 LbH_G1P_TT_C_like Puta 98.9 1.1E-08 2.5E-13 86.3 10.6 84 162-248 18-104 (163)
118 cd05825 LbH_wcaF_like wcaF-lik 98.9 1.1E-08 2.4E-13 80.6 9.7 102 166-280 2-106 (107)
119 PRK14357 glmU bifunctional N-a 98.9 8.3E-09 1.8E-13 100.5 10.3 71 213-283 358-436 (448)
120 COG1043 LpxA Acyl-[acyl carrie 98.9 4.7E-09 1E-13 92.7 7.5 37 164-202 12-48 (260)
121 cd03359 LbH_Dynactin_5 Dynacti 98.9 1.6E-08 3.4E-13 85.6 10.5 82 166-249 20-113 (161)
122 PRK09451 glmU bifunctional N-a 98.9 1.4E-08 3.1E-13 99.3 11.8 70 213-282 369-447 (456)
123 KOG3121 Dynactin, subunit p25 98.9 1.3E-09 2.9E-14 88.8 3.6 56 213-268 101-158 (184)
124 PRK14354 glmU bifunctional N-a 98.9 2.6E-08 5.6E-13 97.2 13.1 85 161-247 259-350 (458)
125 TIGR03536 DapD_gpp 2,3,4,5-tet 98.9 8E-09 1.7E-13 95.1 8.7 50 213-265 230-283 (341)
126 cd00208 LbetaH Left-handed par 98.9 1.9E-08 4.2E-13 73.4 9.2 68 163-240 2-77 (78)
127 cd05635 LbH_unknown Uncharacte 98.9 2.6E-08 5.6E-13 77.9 10.3 83 161-246 11-94 (101)
128 PRK14356 glmU bifunctional N-a 98.8 1.2E-08 2.6E-13 99.6 10.0 86 159-246 261-354 (456)
129 PRK14359 glmU bifunctional N-a 98.8 7.1E-08 1.5E-12 93.4 15.2 72 212-283 341-421 (430)
130 cd04652 LbH_eIF2B_gamma_C eIF- 98.8 3.2E-08 7E-13 73.8 9.0 51 188-248 17-67 (81)
131 COG0110 WbbJ Acetyltransferase 98.8 2.9E-08 6.2E-13 85.5 9.8 117 160-284 59-178 (190)
132 TIGR03535 DapD_actino 2,3,4,5- 98.8 3E-08 6.4E-13 90.9 10.1 99 160-266 152-259 (319)
133 KOG1461 Translation initiation 98.8 1.3E-08 2.7E-13 100.3 7.3 78 162-245 334-416 (673)
134 cd05635 LbH_unknown Uncharacte 98.8 6.4E-08 1.4E-12 75.7 9.9 72 167-249 11-85 (101)
135 cd05824 LbH_M1P_guanylylT_C Ma 98.8 5.6E-08 1.2E-12 72.4 9.0 29 164-194 2-30 (80)
136 cd05824 LbH_M1P_guanylylT_C Ma 98.8 4.2E-08 9E-13 73.1 8.3 28 214-241 52-79 (80)
137 cd03356 LbH_G1P_AT_C_like Left 98.8 6E-08 1.3E-12 71.7 9.0 66 164-248 2-67 (79)
138 COG2171 DapD Tetrahydrodipicol 98.8 1.8E-08 4E-13 90.4 7.1 86 161-256 108-209 (271)
139 cd05787 LbH_eIF2B_epsilon eIF- 98.8 9.4E-08 2E-12 70.4 9.7 64 170-246 2-65 (79)
140 cd04652 LbH_eIF2B_gamma_C eIF- 98.7 8.9E-08 1.9E-12 71.4 9.1 30 213-243 50-79 (81)
141 cd03356 LbH_G1P_AT_C_like Left 98.7 1.3E-07 2.9E-12 69.8 9.4 69 161-241 5-78 (79)
142 cd04647 LbH_MAT_like Maltose O 98.7 1.6E-07 3.4E-12 73.3 10.2 80 167-248 1-87 (109)
143 cd04651 LbH_G1P_AT_C Glucose-1 98.7 8.8E-08 1.9E-12 75.2 8.7 53 188-250 29-81 (104)
144 cd03354 LbH_SAT Serine acetylt 98.7 1.5E-07 3.3E-12 73.1 9.5 34 216-249 37-72 (101)
145 PRK14358 glmU bifunctional N-a 98.7 7.8E-08 1.7E-12 94.9 9.4 34 213-246 322-355 (481)
146 cd03349 LbH_XAT Xenobiotic acy 98.6 6.4E-07 1.4E-11 74.6 11.0 116 168-284 2-127 (145)
147 TIGR01208 rmlA_long glucose-1- 98.5 5.3E-07 1.2E-11 85.3 9.8 14 163-176 250-263 (353)
148 PRK00844 glgC glucose-1-phosph 98.5 4.1E-07 8.8E-12 87.9 8.9 71 165-249 313-383 (407)
149 PF14602 Hexapep_2: Hexapeptid 98.5 1.2E-07 2.6E-12 59.3 3.2 33 214-248 2-34 (34)
150 PRK05293 glgC glucose-1-phosph 98.4 8.9E-07 1.9E-11 84.5 9.5 74 162-248 283-359 (380)
151 TIGR02091 glgC glucose-1-phosp 98.4 1.2E-06 2.7E-11 82.9 9.3 51 187-247 310-360 (361)
152 PLN02241 glucose-1-phosphate a 98.4 1.2E-06 2.5E-11 85.5 8.9 39 162-204 316-354 (436)
153 COG1207 GlmU N-acetylglucosami 98.4 7.4E-07 1.6E-11 84.9 6.8 101 136-248 237-337 (460)
154 COG1208 GCD1 Nucleoside-diphos 98.4 2.6E-06 5.7E-11 81.1 10.3 69 162-242 256-324 (358)
155 TIGR01208 rmlA_long glucose-1- 98.3 2.3E-06 5E-11 80.9 8.9 39 161-203 254-292 (353)
156 TIGR02092 glgD glucose-1-phosp 98.3 2.6E-06 5.7E-11 81.0 8.6 35 213-248 321-355 (369)
157 KOG1322 GDP-mannose pyrophosph 98.3 2.1E-06 4.5E-11 79.3 6.9 80 161-242 264-345 (371)
158 PF00132 Hexapep: Bacterial tr 98.2 4.2E-07 9.2E-12 57.2 1.5 34 214-247 2-35 (36)
159 PRK00725 glgC glucose-1-phosph 98.2 2.9E-06 6.3E-11 82.5 8.0 69 167-249 327-395 (425)
160 KOG3121 Dynactin, subunit p25 98.2 1.8E-06 3.8E-11 70.7 4.9 94 161-256 33-140 (184)
161 cd04651 LbH_G1P_AT_C Glucose-1 98.2 7.2E-06 1.6E-10 64.3 7.7 31 215-246 30-60 (104)
162 PLN02241 glucose-1-phosphate a 98.2 5.2E-06 1.1E-10 81.0 8.1 67 168-247 316-400 (436)
163 KOG4042 Dynactin subunit p27/W 98.1 9.4E-06 2E-10 67.0 7.3 100 162-261 27-145 (190)
164 PRK05293 glgC glucose-1-phosph 98.1 9.3E-06 2E-10 77.5 8.5 63 181-250 282-344 (380)
165 COG1208 GCD1 Nucleoside-diphos 98.1 1.6E-05 3.5E-10 75.7 9.8 78 160-249 260-342 (358)
166 KOG1462 Translation initiation 98.1 6.2E-06 1.4E-10 77.6 6.4 51 188-248 352-402 (433)
167 PRK00725 glgC glucose-1-phosph 98.1 1.5E-05 3.3E-10 77.5 9.4 53 187-250 327-379 (425)
168 PRK00844 glgC glucose-1-phosph 98.1 1.3E-05 2.9E-10 77.4 8.3 71 184-265 312-382 (407)
169 TIGR02091 glgC glucose-1-phosp 98.1 3E-05 6.5E-10 73.5 10.5 34 213-247 310-343 (361)
170 KOG1462 Translation initiation 98.0 2E-05 4.3E-10 74.3 8.5 74 161-241 334-412 (433)
171 PRK02862 glgC glucose-1-phosph 97.9 4.2E-05 9.1E-10 74.5 9.6 31 168-202 309-339 (429)
172 COG0448 GlgC ADP-glucose pyrop 97.9 8.6E-05 1.9E-09 70.6 9.5 114 121-249 236-363 (393)
173 KOG1322 GDP-mannose pyrophosph 97.9 1.2E-05 2.5E-10 74.5 3.5 84 164-250 255-341 (371)
174 KOG1460 GDP-mannose pyrophosph 97.8 3.7E-05 7.9E-10 70.4 5.5 56 182-247 301-356 (407)
175 TIGR02092 glgD glucose-1-phosp 97.7 8.9E-05 1.9E-09 70.5 8.0 50 213-263 304-353 (369)
176 PF00132 Hexapep: Bacterial tr 97.7 3.5E-05 7.6E-10 48.3 3.2 16 186-201 18-33 (36)
177 PF14602 Hexapep_2: Hexapeptid 97.7 3.9E-05 8.5E-10 47.9 3.3 15 214-228 18-32 (34)
178 PF06426 SATase_N: Serine acet 97.7 3.1E-06 6.7E-11 66.7 -2.7 56 10-66 50-105 (105)
179 PRK02862 glgC glucose-1-phosph 97.6 0.00011 2.3E-09 71.8 6.7 79 161-244 308-396 (429)
180 KOG1460 GDP-mannose pyrophosph 97.4 0.00045 9.8E-09 63.4 6.9 68 161-240 288-355 (407)
181 COG0448 GlgC ADP-glucose pyrop 97.1 0.0013 2.7E-08 62.8 6.9 9 251-259 355-363 (393)
182 COG4801 Predicted acyltransfer 96.3 0.012 2.6E-07 52.3 6.9 12 252-263 108-119 (277)
183 KOG4042 Dynactin subunit p27/W 96.2 0.0073 1.6E-07 50.2 4.6 63 164-228 23-93 (190)
184 COG4801 Predicted acyltransfer 95.9 0.013 2.7E-07 52.2 4.7 14 190-203 36-49 (277)
185 PF07959 Fucokinase: L-fucokin 76.8 3.7 8E-05 40.0 4.6 16 213-228 301-316 (414)
186 PF13720 Acetyltransf_11: Udp 73.8 2.3 5.1E-05 31.8 1.9 20 249-268 1-20 (83)
187 PF07959 Fucokinase: L-fucokin 69.1 5.5 0.00012 38.8 3.8 33 214-247 285-317 (414)
188 PRK13412 fkp bifunctional fuco 48.6 18 0.00038 39.2 3.5 48 213-260 336-391 (974)
189 PLN02474 UTP--glucose-1-phosph 32.1 42 0.0009 33.4 3.0 35 212-246 420-458 (469)
190 PF04519 Bactofilin: Polymer-f 30.9 32 0.00069 26.2 1.6 21 230-250 62-82 (101)
191 PRK13412 fkp bifunctional fuco 29.5 67 0.0014 34.9 4.2 10 55-64 209-218 (974)
192 PF10360 DUF2433: Protein of u 27.5 67 0.0015 26.3 3.0 30 23-52 25-54 (132)
193 PF10136 SpecificRecomb: Site- 26.7 2E+02 0.0044 29.8 7.0 70 24-93 43-112 (643)
194 COG1664 CcmA Integral membrane 22.8 2E+02 0.0043 23.9 5.1 38 231-268 84-121 (146)
No 1
>PLN02694 serine O-acetyltransferase
Probab=100.00 E-value=1.4e-63 Score=451.97 Aligned_cols=293 Identities=90% Similarity=1.376 Sum_probs=270.9
Q ss_pred CCCCCCCCCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccch
Q 039045 1 MPAGELRYPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLS 80 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~ 80 (295)
||.++.....|... ........+.+++|++||.||+..+++||+|++|++.+||+|++|+++|+|+||++|.+..|++
T Consensus 2 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~~l~~~~~~~ 79 (294)
T PLN02694 2 MPAGELRHPSPPKT--NSATTADEEAAWLWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLS 79 (294)
T ss_pred CCCCCCCccCCCCC--CCCccccccchHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCcCHHHHHHHHHHHHhCCCcCCH
Confidence 56666555433222 2233445555679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccce
Q 039045 81 TLLYDLFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVF 160 (295)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~ 160 (295)
.+|.++|.++|.++|++++.+..|+.+...+||+|..++.++++|+||++++.||++||||..+++.++..++.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~D~~a~~~rdpa~~~~~~~~l~~~Gf~Al~~yR~ah~l~~~~~~~la~~~~~~~~~~~ 159 (294)
T PLN02694 80 TLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRISDVF 159 (294)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCccccchhhhhhcCHhHHHHHHHHHHHHHHHCCChhHHHHHHHhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
+++||+++.||++++|+|+++++||++|+||+||+|++++++|+.+...+.++++||++|+||+|++|+++++||++|+|
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEE
Confidence 99999999999999999999999999999999999999999999888777899999999999999999999999999999
Q ss_pred CCCCEEcCCCCCCcEEEccCcEEecCCCCCCCCCCCCCccccccccccccccccC
Q 039045 241 GAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295 (295)
Q Consensus 241 gagsvV~~~Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 295 (295)
|+|++|++|||++++++|+||+++++...+.....+|+..|||+++..+|+||.|
T Consensus 240 GAgSVV~kdVP~~~~v~G~PAkiv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~ 294 (294)
T PLN02694 240 GAGSVVLIDVPPRTTAVGNPARLVGGKEKPAKHEECPGESMDHTSFISEWSDYII 294 (294)
T ss_pred CCCCEECCcCCCCcEEEccCcEEEccCCCcccccCCcchhhcccccccccccccC
Confidence 9999999999999999999999999865444445779999999999999999987
No 2
>PLN02357 serine acetyltransferase
Probab=100.00 E-value=3.1e-60 Score=440.80 Aligned_cols=274 Identities=65% Similarity=1.069 Sum_probs=262.7
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHH
Q 039045 22 AGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAA 101 (295)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 101 (295)
..++.+++|++||+||+..+++||+|++||+.+||+|++|+++|+|+||++|.+..|++.+|++++.+.+..+|++.+.+
T Consensus 87 ~~~~~~~~w~~~r~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~kl~~~~~~~~~~~el~~~aL~~DpdI~e~I 166 (360)
T PLN02357 87 DLDRDDDVWLKIQEEAKSDVEQEPILSSYYYASILSHRSLESALANHLSVKLSNLNLPSNTLFDLFIGVLEESPEIIESV 166 (360)
T ss_pred cccccchHHHHHHHHHHHHHhcCchHHHHHHHHccCCccHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHhhCHHHHHHH
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcC
Q 039045 102 VADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG 181 (295)
Q Consensus 102 ~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~ 181 (295)
..|+.+..++||++..++.++++++||++++.||++||||..+++.++..++.++...++++||+++.||+|++|+|+++
T Consensus 167 raDLaAI~eRDPAciSFL~~~l~~kGf~al~~~Riah~l~~~~~~~la~~i~~~~~~~f~vdI~p~a~IG~Gv~Idh~~g 246 (360)
T PLN02357 167 KQDLRAVKERDPACISYVHCFLNFKGFLACQAHRIAHKLWTQGRKILALLIQNRVSEAFAVDIHPGAKIGQGILLDHATG 246 (360)
T ss_pred HHHHHHHHccCcchhhhhHHHhhCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhceeeCCCCEECCCeEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA 261 (295)
Q Consensus 182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA 261 (295)
++||++++||+||+|+++|+||+.+...++++++||++|+||+|++|.++++||++++||+|++|.+|||++++++|+||
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G~PA 326 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVGNPA 326 (360)
T ss_pred eEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEECCCe
Confidence 99999999999999999999999888878889999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCccccccccccccccccC
Q 039045 262 RLVGGKEKTSSNEECPGESMDHTSFISEWSDYII 295 (295)
Q Consensus 262 ~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 295 (295)
|++++.....+...+|++.|||++++.+|+||.|
T Consensus 327 rvv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~ 360 (360)
T PLN02357 327 RLIGGKENPIKHDKIPSLTMDQTSHISEWSDYVI 360 (360)
T ss_pred EEEccCCCccccccCCCccccchhcccchhhccC
Confidence 9999876554445689999999999999999987
No 3
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=404.39 Aligned_cols=255 Identities=66% Similarity=1.029 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 039045 28 WVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRA 107 (295)
Q Consensus 28 ~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~ 107 (295)
.+|.++|+||+.-++.||.+++++++.|++|.++++++++.|+.+|.+..+++.+++++|...+..+|.+++.+..|+.+
T Consensus 15 ~iw~kir~ea~~~~e~ep~ls~~ly~~Ils~~~le~~l~~~L~~~l~~~tl~s~~l~~lf~~~~~~d~~i~~s~~~dl~a 94 (269)
T KOG4750|consen 15 MIWTKIREEAKKDAEYEPILSSYLYASILSHLTLERALAFVLANRLNNTTLLSENLGDLFLSVLRADPLIRESVFDDLDA 94 (269)
T ss_pred hhHHHHHHHHHhhhhhchhhhhhHHHHhccHhHHHHHhhHHHHHhhccccccHhhhhhHhHHHhccCHHHHHHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC
Q 039045 108 ARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET 187 (295)
Q Consensus 108 ~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~ 187 (295)
+..+||+|.+|.++++.++||+|.|.||++|.+|.+++..++..++++++..|+++|||.++||+|..++|+++++||++
T Consensus 95 ~~~rdPac~dy~s~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~ris~~~gvdihpaa~ig~gilldhatgvvigeT 174 (269)
T KOG4750|consen 95 FKIRDPACIDYGSNILHGKGFLANQAYRIAHNLWTQDRKILALGLQVRISPNFGVDIHPAAKIGKGILLDHATGVVIGET 174 (269)
T ss_pred hccCCcchhhhHHHhHhcccHhhhhHHHhhhhheecCCeeEEEeecceecccccccccchhhcccceeeccccceeecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
++||++|+|.+++++|++++..++|||+|||||+||++++|++||+||+|++||+||+|++|||++++.+|+|||++++.
T Consensus 175 Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnPAklIg~~ 254 (269)
T KOG4750|consen 175 AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGKI 254 (269)
T ss_pred eEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCceecCCchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCccccccccc
Q 039045 268 EKTSSNEECPGESMDHTSFI 287 (295)
Q Consensus 268 ~~~~~~~~~p~~~~~~~~~~ 287 (295)
+ ...|.+.|||+.|+
T Consensus 255 ~-----e~~p~ltm~~~~~~ 269 (269)
T KOG4750|consen 255 D-----EKDPGLTMDHTSFI 269 (269)
T ss_pred c-----ccCCcccccccccC
Confidence 5 45799999999764
No 4
>PLN02739 serine acetyltransferase
Probab=100.00 E-value=5.9e-58 Score=422.55 Aligned_cols=255 Identities=57% Similarity=0.929 Sum_probs=247.4
Q ss_pred hHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHH
Q 039045 26 EAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADL 105 (295)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl 105 (295)
.+++|++||+||+..+++||+|++||+++||+|++|+++|+|+||++|.+..|++.+|.++|.+++.++|++++.++.|+
T Consensus 70 ~~~~W~~~r~ea~~~~~~ep~l~~~~~~~il~h~~~~~al~~~la~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 149 (355)
T PLN02739 70 YDPIWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFCNVMVHDRGIQSSIRLDV 149 (355)
T ss_pred cchHHHHHHHHHHHHHhcCchhHHHHHHHccCCccHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEEC
Q 039045 106 RAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIG 185 (295)
Q Consensus 106 ~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG 185 (295)
.+...+||+|..+..++++++||++++.||++||+|..+++.++..++.++...+|++||+++.||++++|+|+++++||
T Consensus 150 ~a~~~rDPA~~~~~~~~l~~~Gf~Al~~yRiah~l~~~~~~~la~~l~~~~~~~~GidI~p~A~IG~Gv~IdHg~GVVIG 229 (355)
T PLN02739 150 QAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVVIG 229 (355)
T ss_pred HHHHccCccccCeeeeeeeCccHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhCcccCCCccccCceEEecCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 186 ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 186 ~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
++++||+||+|+++|+||+++...++++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||+++
T Consensus 230 ~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~ 309 (355)
T PLN02739 230 ETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIG 309 (355)
T ss_pred CCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCCEEec
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccccccc
Q 039045 266 GKEKTSSNEECPGESMDHTS 285 (295)
Q Consensus 266 ~~~~~~~~~~~p~~~~~~~~ 285 (295)
+.. ...|++.||+..
T Consensus 310 ~~~-----~~~p~~~m~~Da 324 (355)
T PLN02739 310 FVD-----EQDPSLTMEYDA 324 (355)
T ss_pred cCC-----ccchhhhhhhhh
Confidence 875 568999999874
No 5
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-54 Score=393.30 Aligned_cols=260 Identities=54% Similarity=0.835 Sum_probs=248.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHH
Q 039045 23 GDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAV 102 (295)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (295)
++..+++|++||+||+..+++||+|++|++.+||+|+.|+.+|+++|+++|.+..+.+..+.+++.+++.++|++.+.+.
T Consensus 3 ~~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~~l~~~~~~~~L~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~i~ 82 (273)
T PRK11132 3 CEELEIVWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAA 82 (273)
T ss_pred cccccHHHHHHHHHHHHHHhcCchhHHHHHHhccCCccHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCHHHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCe
Q 039045 103 ADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGV 182 (295)
Q Consensus 103 ~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v 182 (295)
+|+.+...+||++.++..++++++||++++.||+++|+|..+++.++.+++......++++||+++.||++++|+|++++
T Consensus 83 ~Di~~~~~~dpa~~~~~~pll~~~gf~a~~~yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~gi 162 (273)
T PRK11132 83 CDIQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHATGI 162 (273)
T ss_pred HHHHHHHhcCccccceeEEEEECCChHHHHHHHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCCCe
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred EECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcE
Q 039045 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPAR 262 (295)
Q Consensus 183 ~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~ 262 (295)
+||++|+||+||.|+++++||+++...+.++++||++|+||+||+|+++++||++|+||+||+|++|||++++++|+|||
T Consensus 163 vIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~PAr 242 (273)
T PRK11132 163 VIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPAR 242 (273)
T ss_pred EECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCcE
Confidence 99999999999999999999998877777899999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCccccccccc
Q 039045 263 LVGGKEKTSSNEECPGESMDHTSFI 287 (295)
Q Consensus 263 ~i~~~~~~~~~~~~p~~~~~~~~~~ 287 (295)
++++.. ..+|++.|||++..
T Consensus 243 vi~~~~-----~~~p~~~m~~~~~~ 262 (273)
T PRK11132 243 IVGKPE-----SDKPSMDMDQHFNG 262 (273)
T ss_pred EeCccc-----ccCchhhhhhhccc
Confidence 998875 56899999999743
No 6
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=305.85 Aligned_cols=169 Identities=60% Similarity=0.961 Sum_probs=165.7
Q ss_pred HHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCC
Q 039045 100 AAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHA 179 (295)
Q Consensus 100 ~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~ 179 (295)
.+.+|+.+.+.+||++..++..+++|+||++++.||++|++|...++.++.+++.+.+..++++|||+|+||++++|+|+
T Consensus 6 ~~~~di~a~~~~dPa~~~~~~~~l~y~g~ha~~~~R~ah~l~~~~~~~~A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg 85 (194)
T COG1045 6 SAREDIRAVRERDPAARSYLEVLLYYPGFHALWAHRLAHWLWNRGRKLLARLLSSLSRFLFGIEIHPGAKIGRGLFIDHG 85 (194)
T ss_pred HHHHHHHHHhhcCccccchhHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcceeeCCCCeECCceEEcCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEcc
Q 039045 180 TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGN 259 (295)
Q Consensus 180 ~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~ 259 (295)
++++||++++|||||+|.++||||++++..++|||+||+||.||+||+|+++++||+|+.|||||||++|||++++++|+
T Consensus 86 ~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGv 165 (194)
T COG1045 86 TGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGV 165 (194)
T ss_pred ceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCC
Q 039045 260 PARLVGGKE 268 (295)
Q Consensus 260 PA~~i~~~~ 268 (295)
|||++++..
T Consensus 166 PArii~~~~ 174 (194)
T COG1045 166 PARVIGRPG 174 (194)
T ss_pred cceEeccCC
Confidence 999999765
No 7
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.97 E-value=1.2e-30 Score=221.39 Aligned_cols=161 Identities=58% Similarity=0.924 Sum_probs=150.4
Q ss_pred HHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcC
Q 039045 102 VADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATG 181 (295)
Q Consensus 102 ~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~ 181 (295)
+.|+.++..+||++..+...++..++|+++..||++++++......++..+...+...++++|++++.||++++|+|+.+
T Consensus 2 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~yR~~~~~~~~~~~~l~~~~~~~~~~~~~~~I~~~~~Ig~~~~i~~~~g 81 (162)
T TIGR01172 2 REDIRAVRERDPAARSYLEVLLYYPGFHALWAYRFAHYLWKRGFKFLARLLSNFIRVLTGVDIHPGARIGRGVFIDHGTG 81 (162)
T ss_pred HHHHHHHHhCCcccCCeEEEEEECchHHHHHHHHHHHHHHHccHHHHHHHHHHHHheeeCeEeCCCCEECCCeEECCCCe
Confidence 57899999999999999999999999999999999999998888888877777788888999999999999999999888
Q ss_pred eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA 261 (295)
Q Consensus 182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA 261 (295)
++||++++||+||+|+++++|++.....+.++++||++|+||++|+|.++++||++|+||++|+|.+|||++++++|+||
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~Pa 161 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPA 161 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEeecC
Confidence 99999999999999999999998755555567999999999999999999999999999999999999999999999999
Q ss_pred E
Q 039045 262 R 262 (295)
Q Consensus 262 ~ 262 (295)
|
T Consensus 162 r 162 (162)
T TIGR01172 162 R 162 (162)
T ss_pred C
Confidence 6
No 8
>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria [].; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....
Probab=99.88 E-value=1.5e-22 Score=159.50 Aligned_cols=105 Identities=53% Similarity=0.764 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 039045 29 VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAA 108 (295)
Q Consensus 29 ~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 108 (295)
||++||+||+..+++||.|+++++..||+|++|+++|+++|+++|.+..+....+.+++.+++..+|++.+.+..|+.++
T Consensus 1 ~W~~lr~EA~~~~~~eP~La~~l~~~iL~h~s~~~ALa~~La~kL~~~~~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av 80 (105)
T PF06426_consen 1 LWQQLRAEAEEAAASEPLLASFLHATILSHDSFEDALAFRLANKLADPTLSADQLRDLFRDALEADPEIVEAARADLQAV 80 (105)
T ss_dssp HHHHHHHHHHHHHHH-GGGHHHHHHHTTTSSSHHHHHHHHHHHHH-BTTS-HHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHHhhcccCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccccccchhhcccchhhHHHH
Q 039045 109 RVRDPACVSFSHCLLNYKGFLACQA 133 (295)
Q Consensus 109 ~~~dpa~~~~~~~~~~~~gf~al~~ 133 (295)
+.|||+|..+..++++||||+++|.
T Consensus 81 ~~RDPA~~~~~~~lL~~kGF~AlQa 105 (105)
T PF06426_consen 81 YERDPACPSYLEPLLFFKGFHALQA 105 (105)
T ss_dssp HHHSTT--STHHHHHH-HHHHHHHH
T ss_pred HhCCccccchhHHHHHCccHHHhcC
Confidence 9999999999999999999999873
No 9
>PRK10191 putative acyl transferase; Provisional
Probab=99.87 E-value=1.1e-21 Score=163.31 Aligned_cols=108 Identities=42% Similarity=0.670 Sum_probs=98.5
Q ss_pred cccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045 156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
....+|++|++++.||+++.|+|+.+++|++++.||+||.|+++++||..+... ...++||++|+||++++|.++++||
T Consensus 36 ~~~~~g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~-~~~~~IGd~~~Ig~~~~I~~~v~IG 114 (146)
T PRK10191 36 TECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADN-MACPHIGNGVELGANVIILGDITIG 114 (146)
T ss_pred HHHHhCcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCC-CCCCEECCCcEEcCCCEEeCCCEEC
Confidence 345789999999999999999999999999999999999999999998653322 1357999999999999999999999
Q ss_pred CCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045 236 EGAKVGAGSVVLIDVPARATAVGNPARLV 264 (295)
Q Consensus 236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i 264 (295)
++|+||+|++|.+|+|++++++|+|||+.
T Consensus 115 ~~~~Igags~V~~dv~~~~~v~G~pA~~~ 143 (146)
T PRK10191 115 NNVTVGAGSVVLDSVPDNALVVGEKARVK 143 (146)
T ss_pred CCCEECCCCEECCccCCCcEEEccCcEEE
Confidence 99999999999999999999999999875
No 10
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.86 E-value=1e-20 Score=165.76 Aligned_cols=111 Identities=32% Similarity=0.446 Sum_probs=85.0
Q ss_pred cccceeeEeCCCceecCceEEcCCcCeEE--CCCcEEcCCcEEccCCEECCCCC----------CCCCCCCEECCCCEEC
Q 039045 156 ISDVFAVDIHPAAKIGKGILFDHATGVVI--GETAVIGNNVSILHHVTLGGTGK----------ASGDRHPKIGDGVLIG 223 (295)
Q Consensus 156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~I--G~~~~IG~~v~I~~gv~Igg~~~----------~~~~~~~~IG~~v~IG 223 (295)
+..++.++.|.++.||++++|++ +++| +.++.||++|.|+++|+|...+. ....++++||++||||
T Consensus 64 I~~~~~~~~g~ni~IG~~v~In~--~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG 141 (203)
T PRK09527 64 VEPPVYFSYGSNIHIGRNFYANF--NLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIG 141 (203)
T ss_pred EcCCEEEeeCCCcEEcCCcEECC--CcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEEC
Confidence 44445556667777777777766 4444 33466677777777776653221 1112468999999999
Q ss_pred CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~ 268 (295)
++++|.++++||++|+||+||+|++|+|++++++|+|||++++..
T Consensus 142 ~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 142 SHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred CCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence 999999999999999999999999999999999999999999875
No 11
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=165.30 Aligned_cols=146 Identities=29% Similarity=0.332 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 039045 29 VWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAA 108 (295)
Q Consensus 29 ~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 108 (295)
++..+++|+++.+++||+++++++ .+|+|++|++.++||++|+|++.... .+
T Consensus 3 ~~~~~~~di~a~~~~dPa~~~~~~-~~l~y~g~ha~~~~R~ah~l~~~~~~------------------------~~--- 54 (194)
T COG1045 3 MLGSAREDIRAVRERDPAARSYLE-VLLYYPGFHALWAHRLAHWLWNRGRK------------------------LL--- 54 (194)
T ss_pred hHHHHHHHHHHHhhcCccccchhH-HHHhhhHHHHHHHHHHHHHHHHhhhH------------------------HH---
Confidence 455789999999999999999776 59999999999999999999543211 11
Q ss_pred hccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHH-HHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC
Q 039045 109 RVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLA-LALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET 187 (295)
Q Consensus 109 ~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~-~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~ 187 (295)
+.....+.+.++.-..++.+ ..-+.++++..|++||++|.||++|+|+| +|+||.+
T Consensus 55 ---------------------A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~--gVTLGgt 111 (194)
T COG1045 55 ---------------------ARLLSSLSRFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYH--GVTLGGT 111 (194)
T ss_pred ---------------------HHHHHHHHHhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEc--ceEecCC
Confidence 11111222233333333333 33355678889999999999999999999 9999987
Q ss_pred --------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCE
Q 039045 188 --------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVK 233 (295)
Q Consensus 188 --------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~ 233 (295)
.+||+||.|++|++|.| +++||+|+.||+||+|+.+|-
T Consensus 112 g~~~g~RhPtIg~~V~IGagAkILG--------~I~IGd~akIGA~sVVlkdVP 157 (194)
T COG1045 112 GKESGKRHPTIGNGVYIGAGAKILG--------NIEIGDNAKIGAGSVVLKDVP 157 (194)
T ss_pred CCcCCCCCCccCCCeEECCCCEEEc--------ceEECCCCEECCCceEccCCC
Confidence 48999999999999886 799999999999999999864
No 12
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.86 E-value=1.3e-20 Score=162.77 Aligned_cols=109 Identities=29% Similarity=0.411 Sum_probs=83.0
Q ss_pred cccceeeEeCCCceecCceEEcCCcCeEECCCc--EEcCCcEEccCCEECCCCC----------CCCCCCCEECCCCEEC
Q 039045 156 ISDVFAVDIHPAAKIGKGILFDHATGVVIGETA--VIGNNVSILHHVTLGGTGK----------ASGDRHPKIGDGVLIG 223 (295)
Q Consensus 156 ~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~--~IG~~v~I~~gv~Igg~~~----------~~~~~~~~IG~~v~IG 223 (295)
+..++.+++|.++.||++++|.+ +++|++.+ +||++|.|+++|+|..... .....+++||++||||
T Consensus 62 i~~~~~~~~g~~i~iG~~~~in~--~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG 139 (183)
T PRK10092 62 IEPTFRCDYGYNIFLGNNFYANF--DCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIG 139 (183)
T ss_pred EeCCEEEeecCCcEEcCCcEECC--ceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEEC
Confidence 44445566666777777766665 55555554 5666666666666643211 0112468999999999
Q ss_pred CCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045 224 AGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266 (295)
Q Consensus 224 a~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~ 266 (295)
++|+|+++++||++|+||+||+|.+|+|++++++|+|||++++
T Consensus 140 ~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~ 182 (183)
T PRK10092 140 GRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred CCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence 9999999999999999999999999999999999999999875
No 13
>PLN02739 serine acetyltransferase
Probab=99.85 E-value=6.1e-21 Score=176.95 Aligned_cols=180 Identities=22% Similarity=0.244 Sum_probs=136.9
Q ss_pred CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccc--cchHHHHH
Q 039045 8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSST--LLSTLLYD 85 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~--~~~~~l~~ 85 (295)
..+++..+++.+.+++...+.||+.+++|++++.++||++.++++ .+|.+|+|++.+.||+||+|++.. .++..|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~a~~~rDPA~~~~~~-~~l~~~Gf~Al~~yRiah~l~~~~~~~la~~l~- 197 (355)
T PLN02739 120 PTLLATQLMDIFCNVMVHDRGIQSSIRLDVQAFKDRDPACLSYSS-AILHLKGYLALQAYRVAHKLWKQGRKLLALALQ- 197 (355)
T ss_pred CcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHccCccccCeee-eeeeCccHHHHHHHHHHHHHHHCCChHHHHHHH-
Confidence 456677788889999999999999999999999999999999876 589999999999999999995432 1111111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHH-HHHhhccccceeeEe
Q 039045 86 LFLDTFSSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLA-LALQSRISDVFAVDI 164 (295)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~-~~~~~~~~~~~~v~I 164 (295)
+..+.++.-...+.+ ..-+..+.+..+++|
T Consensus 198 -------------------------------------------------~~~~~~~GidI~p~A~IG~Gv~IdHg~GVVI 228 (355)
T PLN02739 198 -------------------------------------------------SRVSEVFGIDIHPAARIGKGILLDHGTGVVI 228 (355)
T ss_pred -------------------------------------------------HHHHHHhCcccCCCccccCceEEecCCceEE
Confidence 111112222222111 122445666779999
Q ss_pred CCCceecCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045 165 HPAAKIGKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236 (295)
Q Consensus 165 g~~a~IG~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~ 236 (295)
|++++||++|.|.| +++||. .++||++|.|+.|++|.+ +++||++|.||+|++|..+ |.+
T Consensus 229 G~~avIGdnv~I~~--gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG--------~V~IGd~aiIGAGSVV~kD--VP~ 296 (355)
T PLN02739 229 GETAVIGDRVSILH--GVTLGGTGKETGDRHPKIGDGALLGACVTILG--------NISIGAGAMVAAGSLVLKD--VPS 296 (355)
T ss_pred CCCCEECCCCEEcC--CceeCCcCCcCCCCCcEECCCCEEcCCCEEeC--------CeEECCCCEECCCCEECCC--CCC
Confidence 99999999999999 899985 379999999999999975 7999999999999999987 555
Q ss_pred CC-EECCCCEEcCCC
Q 039045 237 GA-KVGAGSVVLIDV 250 (295)
Q Consensus 237 ~~-~IgagsvV~~~V 250 (295)
++ ++|.-+.+.+..
T Consensus 297 ~stvvG~PAriI~~~ 311 (355)
T PLN02739 297 HSMVAGNPAKLIGFV 311 (355)
T ss_pred CcEEEecCCEEeccC
Confidence 55 455556655543
No 14
>PLN02694 serine O-acetyltransferase
Probab=99.84 E-value=4.3e-21 Score=174.78 Aligned_cols=170 Identities=22% Similarity=0.234 Sum_probs=128.2
Q ss_pred CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 039045 8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLF 87 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~ 87 (295)
..+++..+++.+.+++...+.+++.+++|++++.++||++.++++ .+|+||+|++.++||+||+|+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~~rdpa~~~~~~-~~l~~~Gf~Al~~yR~ah~l~~~~~--------- 144 (294)
T PLN02694 75 STLLSTLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSH-CLLNYKGFLACQAHRVAHKLWTQSR--------- 144 (294)
T ss_pred CcCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCccccchhh-hhhcCHhHHHHHHHHHHHHHHHCCC---------
Confidence 356777788899999999999999999999999999999999887 5999999999999999999964321
Q ss_pred HHhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeC
Q 039045 88 LDTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIH 165 (295)
Q Consensus 88 ~~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig 165 (295)
+.+...+..-+...+. -.|.+ + ..-+.++.+..+++||
T Consensus 145 -------~~la~~~~~~~~~~~gvdI~p~A-------------------~--------------IG~gv~Idh~tGVVIG 184 (294)
T PLN02694 145 -------RPLALALHSRISDVFAVDIHPAA-------------------K--------------IGKGILFDHATGVVIG 184 (294)
T ss_pred -------hhHHHHHHHhcccceeEEeCCcc-------------------e--------------ecCCEEEeCCCCeEEC
Confidence 1111111111111111 11111 1 1113345556689999
Q ss_pred CCceecCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045 166 PAAKIGKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237 (295)
Q Consensus 166 ~~a~IG~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~ 237 (295)
++++||++|.|.+ ++++|. +++||++|.|+.+++|.+ +++||++|.||+|++|.++ |.++
T Consensus 185 e~a~IGdnv~I~~--~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilg--------gi~IGd~a~IGAgSVV~kd--VP~~ 252 (294)
T PLN02694 185 ETAVIGNNVSILH--HVTLGGTGKACGDRHPKIGDGVLIGAGATILG--------NVKIGEGAKIGAGSVVLID--VPPR 252 (294)
T ss_pred CCcEECCCCEEee--cceeCCcccccCCCccEECCCeEECCeeEECC--------CCEECCCCEECCCCEECCc--CCCC
Confidence 9999999999998 899985 479999999999999964 6899999999999999886 5555
Q ss_pred CE
Q 039045 238 AK 239 (295)
Q Consensus 238 ~~ 239 (295)
++
T Consensus 253 ~~ 254 (294)
T PLN02694 253 TT 254 (294)
T ss_pred cE
Confidence 53
No 15
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.80 E-value=8.2e-19 Score=149.69 Aligned_cols=104 Identities=35% Similarity=0.469 Sum_probs=72.8
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC----CCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT----GKASGDRHPKIGDGVLIGAGATILGNVKIGE 236 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~----~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~ 236 (295)
++.||+++.|+.++.|....+++||+++.|+++|.|.++..-... .......+++||++|+||++|+|+++++||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 344555555555555543345555555555555555432210000 0001124689999999999999999999999
Q ss_pred CCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045 237 GAKVGAGSVVLIDVPARATAVGNPARLV 264 (295)
Q Consensus 237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i 264 (295)
+|+||+||+|++|+|++++++|+|||++
T Consensus 142 ~~~VgagavV~~~vp~~~vv~G~PAkvi 169 (169)
T cd03357 142 NSVIGAGSVVTKDIPANVVAAGNPARVI 169 (169)
T ss_pred CCEECCCCEEccccCCCcEEEccccEEC
Confidence 9999999999999999999999999985
No 16
>PRK10502 putative acyl transferase; Provisional
Probab=99.80 E-value=8.9e-19 Score=151.31 Aligned_cols=57 Identities=35% Similarity=0.490 Sum_probs=54.1
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~ 268 (295)
.+++||++|+||++|+|+++++||++|+||++|+|++++|++++++|+|||++++..
T Consensus 123 ~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r~ 179 (182)
T PRK10502 123 APIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPRV 179 (182)
T ss_pred CCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEecccc
Confidence 457999999999999999999999999999999999999999999999999998764
No 17
>PLN02357 serine acetyltransferase
Probab=99.79 E-value=5.7e-19 Score=164.99 Aligned_cols=179 Identities=22% Similarity=0.282 Sum_probs=132.5
Q ss_pred CCCCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHH
Q 039045 8 YPSPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLF 87 (295)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~ 87 (295)
..+++..+.+.+.++....+.+++.++.|++++.++||+..+|++. +|.+++|++.++||+||+|++....
T Consensus 141 ~~~~~~~~~el~~~aL~~DpdI~e~IraDLaAI~eRDPAciSFL~~-~l~~kGf~al~~~Riah~l~~~~~~-------- 211 (360)
T PLN02357 141 LNLPSNTLFDLFIGVLEESPEIIESVKQDLRAVKERDPACISYVHC-FLNFKGFLACQAHRIAHKLWTQGRK-------- 211 (360)
T ss_pred ccCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHccCcchhhhhHH-HhhCHHHHHHHHHHHHHHHHHcCCH--------
Confidence 4566777888888888888899999999999999999999999885 8999999999999999999644211
Q ss_pred HHhccCCHHHHHHHHHHHHHHhc--cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeC
Q 039045 88 LDTFSSDPALRAAAVADLRAARV--RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIH 165 (295)
Q Consensus 88 ~~~~~~~~~~~~~~~~dl~~~~~--~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig 165 (295)
.+...+.......+. -.|.+ + ..-+.++....+++||
T Consensus 212 --------~la~~i~~~~~~~f~vdI~p~a-------------------~--------------IG~Gv~Idh~~giVIG 250 (360)
T PLN02357 212 --------ILALLIQNRVSEAFAVDIHPGA-------------------K--------------IGQGILLDHATGVVIG 250 (360)
T ss_pred --------HHHHHHHHHHHHHhceeeCCCC-------------------E--------------ECCCeEECCCCceEEC
Confidence 011111111111111 11211 0 1113345555689999
Q ss_pred CCceecCceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045 166 PAAKIGKGILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237 (295)
Q Consensus 166 ~~a~IG~~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~ 237 (295)
++++||++|.|.+ +++||.. ++||++|.|+.|++|.+ +++||+++.||+|++|.++ |.++
T Consensus 251 e~avIGdnV~I~~--gVtIGg~g~~~g~~~piIGd~V~IGagA~Ilg--------gV~IGdga~IGAgSVV~~d--VP~~ 318 (360)
T PLN02357 251 ETAVVGNNVSILH--NVTLGGTGKQSGDRHPKIGDGVLIGAGTCILG--------NITIGEGAKIGAGSVVLKD--VPPR 318 (360)
T ss_pred CCCEECCCCEEeC--CceecCccccCCccCceeCCCeEECCceEEEC--------CeEECCCCEECCCCEECcc--cCCC
Confidence 9999999999999 8999874 89999999999999864 6899999999999999987 3444
Q ss_pred C-EECCCCEEcC
Q 039045 238 A-KVGAGSVVLI 248 (295)
Q Consensus 238 ~-~IgagsvV~~ 248 (295)
+ ++|.-+.+..
T Consensus 319 ~~v~G~PArvv~ 330 (360)
T PLN02357 319 TTAVGNPARLIG 330 (360)
T ss_pred cEEECCCeEEEc
Confidence 4 4566666654
No 18
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.78 E-value=3.1e-18 Score=135.33 Aligned_cols=106 Identities=33% Similarity=0.374 Sum_probs=86.5
Q ss_pred ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEEC-CCCCCCCCCCCEECCCCEECCCCEECCCCEECCC
Q 039045 159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG-GTGKASGDRHPKIGDGVLIGAGATILGNVKIGEG 237 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Ig-g~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~ 237 (295)
++++.||+++.|++++.|.....++||++|.|+++|.|..+.+-. .........+++||++|+||+++.|.++++||++
T Consensus 1 ~~~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~ 80 (107)
T cd05825 1 PWNLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred CceEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence 357889999999999999866678888888888888886432110 0000011247899999999999999999999999
Q ss_pred CEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045 238 AKVGAGSVVLIDVPARATAVGNPARLV 264 (295)
Q Consensus 238 ~~IgagsvV~~~Vp~~~~v~G~PA~~i 264 (295)
|+|+++|+|.+++|++++++|+|||++
T Consensus 81 ~~i~~gs~v~~~~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 81 AVVGARSVVVRDLPAWTVYAGNPAVPV 107 (107)
T ss_pred CEECCCCEEeCcCCCCCEEECCccEeC
Confidence 999999999999999999999999974
No 19
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.77 E-value=1.8e-18 Score=149.43 Aligned_cols=109 Identities=39% Similarity=0.601 Sum_probs=79.9
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCC-----CCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK-----ASGDRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~-----~~~~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
.+.+|..+.++.++.+....+++||.++.++.+|.|.++.+.+.... ......++||++||||+||+|++||+||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 44555555555555544444556666666666666655433322111 1113469999999999999999999999
Q ss_pred CCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045 236 EGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~ 269 (295)
++++||+||+|++|+|+++++.|+||+++++...
T Consensus 147 ~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~~ 180 (190)
T COG0110 147 EGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRDV 180 (190)
T ss_pred CCcEEeeCCEEeCccCCCeEEeCCcceEEEecch
Confidence 9999999999999999999999999999987653
No 20
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.76 E-value=1.6e-18 Score=157.73 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=130.8
Q ss_pred CCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhc
Q 039045 12 ARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTF 91 (295)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~ 91 (295)
+..+++.+.++....+.+++.+++|+.++.++||++.++++. +|.+++|.+.+.||++++|+......
T Consensus 60 ~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~p-ll~~~gf~a~~~yR~a~~l~~~~~~~----------- 127 (273)
T PRK11132 60 AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTP-LLYLKGFHALQAYRIGHWLWNQGRRA----------- 127 (273)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEE-EEECCChHHHHHHHHHHHHHHCCCch-----------
Confidence 334555556666777889999999999999999999998885 88999999999999999995432110
Q ss_pred cCCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCC-hhHHHHHhhccccceeeEeCCCcee
Q 039045 92 SSDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSR-RPLALALQSRISDVFAVDIHPAAKI 170 (295)
Q Consensus 92 ~~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~-~~~~~~~~~~~~~~~~v~Ig~~a~I 170 (295)
+...+... ....+.-.. +.....-+..+.+..+++||++++|
T Consensus 128 -----la~~~~~~--------------------------------~~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~I 170 (273)
T PRK11132 128 -----LAIYLQNQ--------------------------------ISVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVI 170 (273)
T ss_pred -----hhhhhhhc--------------------------------ceeeeeeEecCcceECCCeEEcCCCCeEECCCCEE
Confidence 00000000 000000000 0001111344556678999999999
Q ss_pred cCceEEcCCcCeEECC--------CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC-EEC
Q 039045 171 GKGILFDHATGVVIGE--------TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA-KVG 241 (295)
Q Consensus 171 G~~v~I~~~~~v~IG~--------~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~-~Ig 241 (295)
|++|.|.+ +++||. .++||++|.||.|++|.+ +++||+||.||+|++|.++ |.+++ +.|
T Consensus 171 Gdnv~I~~--~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg--------gv~IG~~a~IGAgSvV~~d--Vp~~~~v~G 238 (273)
T PRK11132 171 ENDVSILQ--SVTLGGTGKTSGDRHPKIREGVMIGAGAKILG--------NIEVGRGAKIGAGSVVLQP--VPPHTTAAG 238 (273)
T ss_pred CCCCEEcC--CcEEecCcccCCCcCCEECCCcEEcCCCEEcC--------CCEECCCCEECCCCEECcc--cCCCcEEEe
Confidence 99999998 899996 369999999999999985 7999999999999999986 56666 344
Q ss_pred CCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 242 AGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 242 agsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.-+.+.+.... -.|+.-+...
T Consensus 239 ~PArvi~~~~~-----~~p~~~m~~~ 259 (273)
T PRK11132 239 VPARIVGKPES-----DKPSMDMDQH 259 (273)
T ss_pred cCcEEeCcccc-----cCchhhhhhh
Confidence 44444332211 2466655543
No 21
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.74 E-value=2.8e-17 Score=143.11 Aligned_cols=109 Identities=27% Similarity=0.400 Sum_probs=81.9
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCE--EC------C-CC----CCCCCCCCEECCCCEECCCCE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVT--LG------G-TG----KASGDRHPKIGDGVLIGAGAT 227 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~--Ig------g-~~----~~~~~~~~~IG~~v~IGa~a~ 227 (295)
.+.||+++.|++++.|.+..+++||++|.||++|.|.++.+ +. + .. .......++||++|+||++++
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 45667777777777766555666666666666666654322 00 0 00 001124689999999999999
Q ss_pred ECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCC
Q 039045 228 ILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 228 I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~ 269 (295)
|.++++||++|+||++|+|.+++|++++++|+||+++++.+.
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~~~ 186 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYNH 186 (192)
T ss_pred EcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEeccCc
Confidence 999999999999999999999999999999999999998753
No 22
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.73 E-value=6.8e-17 Score=126.13 Aligned_cols=100 Identities=63% Similarity=1.069 Sum_probs=92.5
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
|+.|+++++||++++|+++.+++||+++.||++|.|+++++|+........+++.||++|+|++++.+.++++||++|+|
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i 81 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKI 81 (101)
T ss_pred ceEeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEE
Confidence 68899999999999999877899999999999999999999987665333457899999999999999999999999999
Q ss_pred CCCCEEcCCCCCCcEEEccC
Q 039045 241 GAGSVVLIDVPARATAVGNP 260 (295)
Q Consensus 241 gagsvV~~~Vp~~~~v~G~P 260 (295)
+++++|.+++|++.+++|+|
T Consensus 82 ~~~~~i~~~~~~~~~~~G~P 101 (101)
T cd03354 82 GANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred CCCCEECcccCCCCEEEeCC
Confidence 99999999999999999998
No 23
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.72 E-value=3.2e-17 Score=146.61 Aligned_cols=59 Identities=41% Similarity=0.663 Sum_probs=55.6
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCCC
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKT 270 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~~ 270 (295)
+.++||++|+||++++|..+++||++++|+++++|.+++|++++++|+|||++++.++.
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~~~~ 217 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVDEK 217 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccCChh
Confidence 35899999999999999999999999999999999999999999999999999987643
No 24
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.71 E-value=8.4e-18 Score=145.73 Aligned_cols=174 Identities=21% Similarity=0.240 Sum_probs=127.7
Q ss_pred ccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhccc--ccchHHHHHHHHHhcc
Q 039045 15 LTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSS--TLLSTLLYDLFLDTFS 92 (295)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~--~~~~~~l~~~~~~~~~ 92 (295)
+-..+-..+..++.|-+.++.|..+...+||++-+|.. .+|.+++|.|.++||+||+|+.. +.++--+...
T Consensus 70 l~~lf~~~~~~d~~i~~s~~~dl~a~~~rdPac~dy~s-~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~r------ 142 (269)
T KOG4750|consen 70 LGDLFLSVLRADPLIRESVFDDLDAFKIRDPACIDYGS-NILHGKGFLANQAYRIAHNLWTQDRKILALGLQVR------ 142 (269)
T ss_pred hhhHhHHHhccCHHHHHHHHHhhhhhccCCcchhhhHH-HhHhcccHhhhhHHHhhhhheecCCeeEEEeecce------
Confidence 33344444556677999999999999999999999776 69999999999999999999764 2222211111
Q ss_pred CCHHHHHHHHHHHHHHhccCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecC
Q 039045 93 SDPALRAAAVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGK 172 (295)
Q Consensus 93 ~~~~~~~~~~~dl~~~~~~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~ 172 (295)
++..+--..++.....-+..+++..|++||++++||+
T Consensus 143 -------------------------------------------is~~~gvdihpaa~ig~gilldhatgvvigeTAvvg~ 179 (269)
T KOG4750|consen 143 -------------------------------------------ISPNFGVDIHPAAKIGKGILLDHATGVVIGETAVVGD 179 (269)
T ss_pred -------------------------------------------ecccccccccchhhcccceeeccccceeecceeEecc
Confidence 1111111111222222345577889999999999999
Q ss_pred ceEEcCCcCeEECCC--------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 173 GILFDHATGVVIGET--------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244 (295)
Q Consensus 173 ~v~I~~~~~v~IG~~--------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags 244 (295)
++.|.| ++++|.+ ..|||||.||.|++|.+ +++||+|+.||+|++|+.+| -.....+|.-+
T Consensus 180 ~vSilH--~Vtlggtgk~~gdrhP~Igd~vliGaGvtILg--------nV~IGegavIaAGsvV~kDV-P~~~~AvGnPA 248 (269)
T KOG4750|consen 180 NVSILH--PVTLGGTGKGSGDRHPKIGDNVLIGAGVTILG--------NVTIGEGAVIAAGSVVLKDV-PPNTLAVGNPA 248 (269)
T ss_pred ceeeec--ceeeccccccccccCCcccCCeEEccccEEeC--------CeeECCCcEEeccceEEecc-CCCceecCCch
Confidence 999999 9999986 48999999999999986 79999999999999999885 22333555555
Q ss_pred EEcCC
Q 039045 245 VVLID 249 (295)
Q Consensus 245 vV~~~ 249 (295)
.+..-
T Consensus 249 klIg~ 253 (269)
T KOG4750|consen 249 KLIGK 253 (269)
T ss_pred hhccc
Confidence 55443
No 25
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.70 E-value=1.6e-16 Score=126.90 Aligned_cols=103 Identities=41% Similarity=0.496 Sum_probs=82.4
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC-------CCCCCEECCCCEECCCCEECCCCE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS-------GDRHPKIGDGVLIGAGATILGNVK 233 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~-------~~~~~~IG~~v~IGa~a~I~~~v~ 233 (295)
++.|++++.||+++.|++ +++|+++++||++|.|++++++.+..... ...+++||++|+||++++|..+++
T Consensus 10 ~~~i~~~~~Ig~~~~I~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ 87 (119)
T cd03358 10 NVFIENDVKIGDNVKIQS--NVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVT 87 (119)
T ss_pred CcEECCCcEECCCcEECC--CcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcE
Confidence 345666677777777766 66777777777777777777775421111 125689999999999999999999
Q ss_pred ECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 234 IGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 234 IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
||+++.|+++++|.+++|+++++.|+|||+++
T Consensus 88 ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~~ 119 (119)
T cd03358 88 IGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119 (119)
T ss_pred ECCCCEEccCCEEeCcCCCCeEEecCcceecC
Confidence 99999999999999999999999999999864
No 26
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.70 E-value=2.3e-16 Score=131.48 Aligned_cols=106 Identities=30% Similarity=0.344 Sum_probs=84.5
Q ss_pred eEeCCCceecC-ceEEcCCcCeEECCCcEEcCCcEEccC-CEECC-----------C--------CCCCCCCCCEECCCC
Q 039045 162 VDIHPAAKIGK-GILFDHATGVVIGETAVIGNNVSILHH-VTLGG-----------T--------GKASGDRHPKIGDGV 220 (295)
Q Consensus 162 v~Ig~~a~IG~-~v~I~~~~~v~IG~~~~IG~~v~I~~g-v~Igg-----------~--------~~~~~~~~~~IG~~v 220 (295)
+.||.++.|+. .+.+.. ..++||++|.|+.+|.|..+ .+-.. . .......+++||++|
T Consensus 2 ~~iG~~s~i~~~~~~~~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 80 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGG-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV 80 (145)
T ss_pred EEEeCceeeCCCCceEeC-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence 46888888888 555554 47888888888888888766 22110 0 001123579999999
Q ss_pred EECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045 221 LIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 221 ~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~ 268 (295)
+||++++|+++++||++|+||++|+|++++|++++++|+||+++++..
T Consensus 81 ~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~ 128 (145)
T cd03349 81 WIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRF 128 (145)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhC
Confidence 999999999999999999999999999999999999999999998753
No 27
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.68 E-value=4.5e-16 Score=135.88 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=76.4
Q ss_pred eEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------cCCEECCCCCCCCCCCCEECCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------HHVTLGGTGKASGDRHPKIGDGVLIGAGATILG 230 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~ 230 (295)
+.||+++.|+++++|... ..++||.++.||++|+|. ++++|+..... .+++||++|+||.+++|+.
T Consensus 29 V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i---~g~vIG~~v~IG~ga~V~~ 105 (196)
T PRK13627 29 VIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL---HGCVIGRDALVGMNSVIMD 105 (196)
T ss_pred eEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE---eeEEECCCCEECcCCccCC
Confidence 456666666666655431 124566666666666553 33333322211 3579999999999999999
Q ss_pred CCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCC
Q 039045 231 NVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKE 268 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~ 268 (295)
+++||++++|++||+|.+++ |++++++|+|||+++...
T Consensus 106 g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~ 145 (196)
T PRK13627 106 GAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVS 145 (196)
T ss_pred CcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCC
Confidence 99999999999999999986 899999999999999865
No 28
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.67 E-value=2.4e-16 Score=142.99 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=78.0
Q ss_pred eeEeCCCceecCceEEcCCc----CeEECCCcEEcCCcE------EccCCEECCCCCCCCCCCCEECCCCEECCCCEECC
Q 039045 161 AVDIHPAAKIGKGILFDHAT----GVVIGETAVIGNNVS------ILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG 230 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~----~v~IG~~~~IG~~v~------I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~ 230 (295)
.+.||+++.|+++++|..++ .++||+++.|.+++. |+++++|+...... .+++||++|+||.++.|.+
T Consensus 77 ~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~--g~v~Igd~a~Ig~~a~V~~ 154 (255)
T PRK12461 77 RLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLA--GHVTVGDRAIISGNCLVHQ 154 (255)
T ss_pred eeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccC--CceEECCCeEEeCCCEECC
Confidence 56788888888888776532 345555444333333 33333333222222 4899999999999999999
Q ss_pred CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045 231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~ 268 (295)
+++||++++|+++|+|++||||++++.|+||++.+-..
T Consensus 155 ~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~~~~n~ 192 (255)
T PRK12461 155 FCRIGALAMMAGGSRISKDVPPYCMMAGHPTNVHGLNA 192 (255)
T ss_pred CCEECCCcEECCCceEeccCCCCeEEecCcceEeccch
Confidence 99999999999999999999999999999999855443
No 29
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.67 E-value=8.4e-16 Score=126.94 Aligned_cols=99 Identities=27% Similarity=0.410 Sum_probs=80.2
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
++.+..++.||++++|.+ +++|+.+++||++|.|+++++|++.......++++||++|+||++++|.++++||++++|
T Consensus 25 ~~~i~~~~~IG~~~~I~~--~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~I 102 (139)
T cd03350 25 PSYVNIGAYVDEGTMVDS--WATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVL 102 (139)
T ss_pred CCEEccCCEECCCeEEcC--CCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence 344666667777777776 678888888888888888888876433223356899999999999999999999999999
Q ss_pred CCCCEEc---------------CCCCCC-cEEEccCc
Q 039045 241 GAGSVVL---------------IDVPAR-ATAVGNPA 261 (295)
Q Consensus 241 gagsvV~---------------~~Vp~~-~~v~G~PA 261 (295)
+++++|. +|+|++ .+++|+|.
T Consensus 103 g~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~~~g~~~ 139 (139)
T cd03350 103 AAGVVLTQSTPIYDRETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred cCCCEEcCCeEecccCcccEEecccCCCCEEecccCC
Confidence 9999999 888888 77888874
No 30
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.66 E-value=2.8e-16 Score=143.17 Aligned_cols=107 Identities=30% Similarity=0.367 Sum_probs=85.7
Q ss_pred eeEeCCCceecCceEEcCCc-----CeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045 161 AVDIHPAAKIGKGILFDHAT-----GVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN 231 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~-----~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~ 231 (295)
.+.||+++.|+++++|..++ .++||+++.|+.++.|++++.||....... ..+++||++|+||.++.|.++
T Consensus 80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~ 159 (262)
T PRK05289 80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF 159 (262)
T ss_pred eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC
Confidence 57788888888888887642 367777777776666666665554422211 247999999999999999999
Q ss_pred CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
++||++++||++|+|++|+|+++++.|+||++.+..
T Consensus 160 v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~~~n 195 (262)
T PRK05289 160 VRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGLN 195 (262)
T ss_pred CEECCCCEEeeecceeccCCCCeEEecccCeEeccc
Confidence 999999999999999999999999999999997633
No 31
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.66 E-value=3e-16 Score=132.82 Aligned_cols=99 Identities=36% Similarity=0.581 Sum_probs=76.6
Q ss_pred eEeCCCceecCceEEcC-CcCeEECCC----------------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDH-ATGVVIGET----------------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGA 224 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~-~~~v~IG~~----------------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa 224 (295)
+.|++++.|..++.|.. ...+.||++ +.||++|+|+|++.|. .++||++|+||-
T Consensus 30 V~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH---------Gc~Ig~~~lIGm 100 (176)
T COG0663 30 VRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH---------GCTIGDNVLIGM 100 (176)
T ss_pred EEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE---------EeEECCCcEEec
Confidence 44555555555544432 124555554 3566666677777664 489999999999
Q ss_pred CCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045 225 GATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 225 ~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~ 269 (295)
|++|+.+++||++|+||+||+|++. +|++++++|.|||+++..++
T Consensus 101 gA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~ 147 (176)
T COG0663 101 GATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD 147 (176)
T ss_pred CceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence 9999999999999999999999985 89999999999999998763
No 32
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=5.6e-16 Score=131.71 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=90.0
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccC----------CEECCCCCCC---CCCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHH----------VTLGGTGKAS---GDRHPKIGDGVLIGAGA 226 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~g----------v~Igg~~~~~---~~~~~~IG~~v~IGa~a 226 (295)
.+.||+++.|++++.|... ..++||++|.|+++|+|.+. ++||...... ...+++||++|+||++|
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a 96 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKS 96 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCC
Confidence 4567777777777777532 35777887777777777544 3355432111 11358999999999999
Q ss_pred EECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCcccccccccccc
Q 039045 227 TILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMDHTSFISEW 290 (295)
Q Consensus 227 ~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~~~~~~~ 290 (295)
+|+++++||++|+||++|+|.++ +|+++++.|+|+...-. ...|+...+|..|++-|
T Consensus 97 ~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~-------~~~~~~~~~~~~~~~~~ 155 (164)
T cd04646 97 FVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ-------TDRPKPQTLQLDFLRKI 155 (164)
T ss_pred EECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec-------CCCchhHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999965532 24566666666565544
No 33
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.64 E-value=2.3e-15 Score=128.68 Aligned_cols=48 Identities=56% Similarity=0.908 Sum_probs=46.7
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~P 260 (295)
+++||++|+||++++|.++++||++|+||++++|.+++|++++++|+|
T Consensus 150 ~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 150 GVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999998
No 34
>PLN02296 carbonate dehydratase
Probab=99.63 E-value=3.1e-15 Score=136.38 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=79.3
Q ss_pred eEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------------cCCEECCCCCCCCCCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------------HHVTLGGTGKASGDRHPKIGDGVLIGA 224 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------------~gv~Igg~~~~~~~~~~~IG~~v~IGa 224 (295)
+.||+++.|+.++.|... .+++||++|.|+++|+|. ++|+|+.+... +.++||++|+||.
T Consensus 71 V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI---~g~~Igd~v~IG~ 147 (269)
T PLN02296 71 VQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL---HGCTVEDEAFVGM 147 (269)
T ss_pred eEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee---cCCEECCCcEECC
Confidence 556666666666666532 245677777777666553 33333332222 3589999999999
Q ss_pred CCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045 225 GATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE 268 (295)
Q Consensus 225 ~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~ 268 (295)
+++|+.+++||++|+||+||+|.++ +|++++++|+||++++...
T Consensus 148 ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~ 193 (269)
T PLN02296 148 GATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLT 193 (269)
T ss_pred CcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCC
Confidence 9999999999999999999999999 8999999999999998765
No 35
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.63 E-value=2.2e-15 Score=136.18 Aligned_cols=80 Identities=31% Similarity=0.447 Sum_probs=59.5
Q ss_pred CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC------------
Q 039045 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI------------ 248 (295)
Q Consensus 181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~------------ 248 (295)
+++||++++||+||.|..++.|+|........+++||++|+||++|+|.++++||++|+||+|++|.+
T Consensus 141 ~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v 220 (269)
T TIGR00965 141 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEI 220 (269)
T ss_pred CcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCce
Confidence 34555555555555555555554432222235689999999999999999999999999999999954
Q ss_pred ---CCCCCcEEE-c-cC
Q 039045 249 ---DVPARATAV-G-NP 260 (295)
Q Consensus 249 ---~Vp~~~~v~-G-~P 260 (295)
+||++++|+ | .|
T Consensus 221 ~~~~vp~~svv~~g~~p 237 (269)
T TIGR00965 221 HYGRVPAGSVVVSGNLP 237 (269)
T ss_pred eeeecCCCcEEecCCee
Confidence 789999998 4 66
No 36
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.63 E-value=2.8e-15 Score=131.76 Aligned_cols=56 Identities=43% Similarity=0.669 Sum_probs=53.7
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.+++||++|+||.+++|..+++||++++||+|++|.+++|++++++|+||+++++.
T Consensus 107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~ 162 (204)
T TIGR03308 107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR 162 (204)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence 57899999999999999999999999999999999999999999999999998864
No 37
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.62 E-value=5.3e-15 Score=116.05 Aligned_cols=103 Identities=40% Similarity=0.615 Sum_probs=83.7
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCC--EECCCCC---CCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHV--TLGGTGK---ASGDRHPKIGDGVLIGAGATILGNVKIGE 236 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv--~Igg~~~---~~~~~~~~IG~~v~IGa~a~I~~~v~IG~ 236 (295)
+.||+++.|++++.|....+++||++|.|+++|.|..+. .+..... .....+++||++|+|++++.+..++.||+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 568999999999988865578888888888888887642 1111110 11125689999999999999999999999
Q ss_pred CCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045 237 GAKVGAGSVVLIDVPARATAVGNPARLV 264 (295)
Q Consensus 237 ~~~IgagsvV~~~Vp~~~~v~G~PA~~i 264 (295)
+|+|++++.|.+++|+++++.|.|||++
T Consensus 82 ~~~i~~~~~v~~~i~~~~i~~g~pa~~~ 109 (109)
T cd04647 82 GAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 (109)
T ss_pred CCEECCCCEEeeECCCCCEEEccccEeC
Confidence 9999999999999999999999999975
No 38
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.62 E-value=6.7e-15 Score=123.73 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=80.7
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEE----------ccCCEECCCCCCCCCCCCEECCCCEECCCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSI----------LHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL 229 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I----------~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~ 229 (295)
.+.||+++.|+++++|... ..++||++|.|+++|.| +++++|+..... .++.||++|+||++++|.
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i---~~~~Ig~~~~Ig~~~~I~ 94 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAIL---HGCTIGRNALVGMNAVVM 94 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEE---ECCEECCCCEECCCCEEe
Confidence 3567777777777766531 24677777777766655 333333332211 357999999999999999
Q ss_pred CCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCCC
Q 039045 230 GNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 230 ~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~~ 269 (295)
.+++||++|+|+++++|.+ ++|++++++|+|||++++.+.
T Consensus 95 ~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~ 136 (155)
T cd04745 95 DGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD 136 (155)
T ss_pred CCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence 9999999999999999998 689999999999999998653
No 39
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.62 E-value=4.4e-15 Score=128.26 Aligned_cols=49 Identities=57% Similarity=0.871 Sum_probs=47.4
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCc
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPA 261 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA 261 (295)
.++||++|+||++++|.++++||++|+|+++++|.+++|+++++.|+||
T Consensus 153 ~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 153 GVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCEEEeccC
Confidence 6899999999999999999999999999999999999999999999997
No 40
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.61 E-value=6.1e-15 Score=133.71 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=82.3
Q ss_pred eeEeCCCceecCceEEcCC-----cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045 161 AVDIHPAAKIGKGILFDHA-----TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN 231 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~ 231 (295)
.+.||+++.|++++.|..+ ..++||+++.|+.++.|+++++||....... ..+++||++|+||.++.|.++
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~ 155 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF 155 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence 5667888888877777643 2566777666666655555555554322211 246899999999999999999
Q ss_pred CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045 232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266 (295)
Q Consensus 232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~ 266 (295)
++||++++||++++|.+++|+++++.|+|+++.+.
T Consensus 156 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~~~~ 190 (254)
T TIGR01852 156 VRIGRYAMIGGLSAVSKDVPPYGLVEGNRARLRGL 190 (254)
T ss_pred cEECCCCEEeeeeeEeeecCCCcEEecCcCeeccc
Confidence 99999999999999999999999999999998653
No 41
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.61 E-value=3e-15 Score=140.29 Aligned_cols=106 Identities=30% Similarity=0.427 Sum_probs=78.0
Q ss_pred eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
+.|++++.||.++.|+.+ ..++||+++.|++.|.|+++|+||....... ..+++||++|+||.++.|.++++||
T Consensus 196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig 275 (324)
T TIGR01853 196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIG 275 (324)
T ss_pred EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEEC
Confidence 556666666666666532 1345555555555555555555544332211 2468999999999999999999999
Q ss_pred CCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 236 EGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 236 ~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
++|+||++|+|++|+|+++++.|+||+.+++-
T Consensus 276 ~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~ 307 (324)
T TIGR01853 276 DNVTIGAKSGVTKSIPPPGVYGGIPARPNKEW 307 (324)
T ss_pred CCCEEccCCEeCCcCCCCcEEEccCccHHHHH
Confidence 99999999999999999999999999998764
No 42
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.60 E-value=1e-14 Score=132.17 Aligned_cols=107 Identities=29% Similarity=0.388 Sum_probs=81.9
Q ss_pred eeEeCCCceecCceEEcCC-----cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCC
Q 039045 161 AVDIHPAAKIGKGILFDHA-----TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGN 231 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~ 231 (295)
++.||+++.|++++.|..+ ..++||+++.|++++.|+++++||....... ..+++||++|+||.+++|.++
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 5667777777777777642 2466677666666665555555544322211 247899999999999999999
Q ss_pred CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 232 VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 232 v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
++||++++||++|+|.+++|+++++.|+|+++.+..
T Consensus 157 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~~~~~ 192 (254)
T cd03351 157 CRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLN 192 (254)
T ss_pred cEECCCCEECcCCEEeeecCCCeEEEccCCeEeccc
Confidence 999999999999999999999999999999876543
No 43
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=132.19 Aligned_cols=88 Identities=30% Similarity=0.404 Sum_probs=62.3
Q ss_pred CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC------------
Q 039045 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI------------ 248 (295)
Q Consensus 181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~------------ 248 (295)
+++||++|+||+||.|++++.|++........+++||++|+||++++|..+++||++|+||+|++|.+
T Consensus 144 ~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v 223 (272)
T PRK11830 144 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEV 223 (272)
T ss_pred ccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcE
Confidence 34444444444444555554444322212224689999999999999999999999999999988876
Q ss_pred ---CCCCCcEEE-cc-----------CcEEecCCC
Q 039045 249 ---DVPARATAV-GN-----------PARLVGGKE 268 (295)
Q Consensus 249 ---~Vp~~~~v~-G~-----------PA~~i~~~~ 268 (295)
+||++++++ |. ||+++++.+
T Consensus 224 ~~g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~ 258 (272)
T PRK11830 224 HYGRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVD 258 (272)
T ss_pred EeeecCCCcEEecCcccccCCCcCCcCcEEEEEcc
Confidence 688888887 73 777777765
No 44
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.59 E-value=1.1e-14 Score=127.37 Aligned_cols=106 Identities=34% Similarity=0.486 Sum_probs=82.3
Q ss_pred eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKI 234 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~I 234 (295)
.+.|++++.|+.++.+..+ ..++||+++.|++++.|+++++|+....... ..+++||++|+||++++|.++++|
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~i 171 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTI 171 (205)
T ss_pred eEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEE
Confidence 4667777777777776542 2456666666666666666665554433221 147899999999999999999999
Q ss_pred CCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045 235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266 (295)
Q Consensus 235 G~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~ 266 (295)
|++++|+++++|.+++|++.++.|+||+++++
T Consensus 172 g~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~ 203 (205)
T cd03352 172 GDGVVIGAGSGVTSIVPPGEYVSGTPAQPHRE 203 (205)
T ss_pred CCCCEEcCCCEEeeECCCCCEEEeecCchhhh
Confidence 99999999999999999999999999998765
No 45
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.58 E-value=1.9e-14 Score=125.32 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=78.0
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----cCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----HHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v 232 (295)
.+.||+++.|++++.|... ..++||+++.||++|+|. .++.|+......+ ..+++||++|+||.+++|..++
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~ 105 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGA 105 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCe
Confidence 3567777777777766421 135566666666665552 2233333222111 1358999999999999999999
Q ss_pred EECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045 233 KIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE 268 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~ 268 (295)
+||++|+|+++++|.++ +|+++++.|+|||+++...
T Consensus 106 ~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~ 143 (192)
T TIGR02287 106 VIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELS 143 (192)
T ss_pred EECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCC
Confidence 99999999999999984 8999999999999998754
No 46
>PLN02472 uncharacterized protein
Probab=99.56 E-value=2.5e-14 Score=128.95 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=76.2
Q ss_pred eEeCCCceecCceEEcC-CcCeEECCCcEEcCCcEEc----------------cCCEECCCCCCCCCCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDH-ATGVVIGETAVIGNNVSIL----------------HHVTLGGTGKASGDRHPKIGDGVLIGA 224 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~-~~~v~IG~~~~IG~~v~I~----------------~gv~Igg~~~~~~~~~~~IG~~v~IGa 224 (295)
+.|++++.|+.+++|.. ...++||.++.|+++|+|. ++|+||..... .+++||++|+||.
T Consensus 78 V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L---~~~~Igd~v~IG~ 154 (246)
T PLN02472 78 VTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL---RSCTIEPECIIGQ 154 (246)
T ss_pred EEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE---CCeEEcCCCEECC
Confidence 45555555555554432 2346666666666665553 33333332222 3689999999999
Q ss_pred CCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045 225 GATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 225 ~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~ 268 (295)
+++|+.+++||++|+|+++++|.+ ++|++.++.|+||++++...
T Consensus 155 ~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~ 200 (246)
T PLN02472 155 HSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLT 200 (246)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCC
Confidence 999999999999999999999994 59999999999999988765
No 47
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.55 E-value=2.1e-14 Score=121.81 Aligned_cols=146 Identities=26% Similarity=0.359 Sum_probs=97.2
Q ss_pred HHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccCCHHHHHHHHHHHHHHh--c
Q 039045 33 IKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSSDPALRAAAVADLRAAR--V 110 (295)
Q Consensus 33 ~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~dl~~~~--~ 110 (295)
|+.|.++...+||+..+++. .++.+|+|++...||+++++....+ +.+...+........ .
T Consensus 1 ~~~d~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~yR~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~ 63 (162)
T TIGR01172 1 IREDIRAVRERDPAARSYLE-VLLYYPGFHALWAYRFAHYLWKRGF----------------KFLARLLSNFIRVLTGVD 63 (162)
T ss_pred CHHHHHHHHhCCcccCCeEE-EEEECchHHHHHHHHHHHHHHHccH----------------HHHHHHHHHHHheeeCeE
Confidence 47899999999999999876 4789999999999999999842111 111111110000000 0
Q ss_pred cCccccccchhhcccchhhHHHHHHHHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCC---
Q 039045 111 RDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGET--- 187 (295)
Q Consensus 111 ~dpa~~~~~~~~~~~~gf~al~~~r~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~--- 187 (295)
-+|.+ + ..-...+.+..++.|+++++||++|+|++ +++|+..
T Consensus 64 I~~~~-------------------~--------------Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~--~v~ig~~~~~ 108 (162)
T TIGR01172 64 IHPGA-------------------R--------------IGRGVFIDHGTGVVIGETAVIGDDVTIYH--GVTLGGTGKE 108 (162)
T ss_pred eCCCC-------------------E--------------ECCCeEECCCCeEEECCCCEECCCCEEcC--CCEECCCccc
Confidence 00100 0 00122233345678888888888888888 7888753
Q ss_pred -----cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 188 -----AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 188 -----~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
++||++|.|+.+++|.+ .++||++|+||++++|.++ |.+++++
T Consensus 109 ~~~~~~~Ig~~v~Ig~~a~I~~--------~v~IG~~~~Iga~s~V~~d--vp~~~~~ 156 (162)
T TIGR01172 109 KGKRHPTVGEGVMIGAGAKVLG--------NIEVGENAKIGANSVVLKD--VPPGATV 156 (162)
T ss_pred cCCcCCEECCCcEEcCCCEEEC--------CcEECCCCEECCCCEECCC--CCCCCEE
Confidence 58888888888888874 6889999999999999886 5666544
No 48
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.54 E-value=2.6e-14 Score=135.02 Aligned_cols=106 Identities=31% Similarity=0.409 Sum_probs=80.8
Q ss_pred eEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
+.|++++.||.+++|+.+ .+++||+++.|+++|.|+++|+||....... ..+++||++|+||.++.|.++++||
T Consensus 204 v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig 283 (343)
T PRK00892 204 VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIG 283 (343)
T ss_pred EEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEEC
Confidence 556666666666666542 2456666666666666666666665432221 2468999999999999999999999
Q ss_pred CCCEECCCCEEcCCCCC-CcEEEccCcEEecCC
Q 039045 236 EGAKVGAGSVVLIDVPA-RATAVGNPARLVGGK 267 (295)
Q Consensus 236 ~~~~IgagsvV~~~Vp~-~~~v~G~PA~~i~~~ 267 (295)
++++|+++|+|.+|+|+ +..+.|+||+.+++-
T Consensus 284 ~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~ 316 (343)
T PRK00892 284 DGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEW 316 (343)
T ss_pred CCCEEecCCeeCCccCCCCeEEEeecCchHHHH
Confidence 99999999999999999 888899999998753
No 49
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.54 E-value=7.2e-14 Score=117.50 Aligned_cols=108 Identities=27% Similarity=0.407 Sum_probs=83.0
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccC----CEECCCCCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHH----VTLGGTGKASG---DRHPKIGDGVLIGAGATILGNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~g----v~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v 232 (295)
.+.||+++.|++++.|... .+++||++|.|+++|.|.+. ++|+....... ..+++||++|+||.++.|.+++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~ 97 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLNGA 97 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeCCC
Confidence 4667888888888877642 24788888888877775442 33333221111 1357999999999999999999
Q ss_pred EECCCCEECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045 233 KIGEGAKVGAGSVVLI--DVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~ 268 (295)
+||++++|++++.|.+ ++|++.+++|+||++++..+
T Consensus 98 ~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~ 135 (154)
T cd04650 98 KIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLT 135 (154)
T ss_pred EECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCC
Confidence 9999999999999996 69999999999999998765
No 50
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=1.5e-13 Score=116.25 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=81.4
Q ss_pred ceeeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccCC------------EECCCCCCCC---CCCCEECCCCEE
Q 039045 159 VFAVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHV------------TLGGTGKASG---DRHPKIGDGVLI 222 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~gv------------~Igg~~~~~~---~~~~~IG~~v~I 222 (295)
..++.|++++.|++++.|... .+++||++|.|+++|.|...+ +|+....... ..+++||+++.|
T Consensus 19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 346778888888888877642 246777777777777765432 2332211111 023567888888
Q ss_pred CCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045 223 GAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 223 Ga~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~ 269 (295)
|++++|..+++|+++++|+++++|.++ +|+++++.|+||+++++.+.
T Consensus 99 g~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~ 147 (161)
T cd03359 99 GKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE 147 (161)
T ss_pred CCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence 889999999999999999999999988 89999999999999998763
No 51
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.49 E-value=1.7e-13 Score=133.42 Aligned_cols=55 Identities=27% Similarity=0.501 Sum_probs=51.8
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.++||++|+||.+++|.++++||++++||+||+|.+|+|+++++.|+|++.+++.
T Consensus 390 ~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~ 444 (450)
T PRK14360 390 RTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKEN 444 (450)
T ss_pred CcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccc
Confidence 5789999999999999999999999999999999999999999999999988653
No 52
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.47 E-value=2.7e-13 Score=131.75 Aligned_cols=55 Identities=38% Similarity=0.595 Sum_probs=51.7
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.++||++|+||.+++|.++++||++|+||+|++|.+|||++++++|.|++...+.
T Consensus 390 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~ 444 (451)
T TIGR01173 390 KTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEG 444 (451)
T ss_pred CCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeeccc
Confidence 4789999999999999999999999999999999999999999999999887764
No 53
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.47 E-value=4.2e-13 Score=137.26 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=77.9
Q ss_pred eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045 160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAK 239 (295)
Q Consensus 160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~ 239 (295)
.|+.||+++.|+. ..+.....++||++|.|+++|.|.....-++ . .....++||+||+||++|+|.+|++||++|+
T Consensus 111 lGa~IG~~v~I~~-~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~--l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~ 186 (695)
T TIGR02353 111 LGAKIGKGVDIGS-LPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-R--LHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQ 186 (695)
T ss_pred cCCEECCCCEEEe-eecccCCceEECCCCEECCCCEEEcccCCCC-c--eeecCcEECCCcEECCCCEEcCCCEECCCCE
Confidence 4666666666665 3332233566666666666666644322111 0 1124689999999999999999999999999
Q ss_pred ECCCCEEcC--CCCCCcEEEccCcEEecCCC
Q 039045 240 VGAGSVVLI--DVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 240 IgagsvV~~--~Vp~~~~v~G~PA~~i~~~~ 268 (295)
||++|+|.+ ++|+++++.|+||+.+++..
T Consensus 187 vgagS~V~~g~~v~~~~~~~G~PA~~~~~~~ 217 (695)
T TIGR02353 187 LGHGSALQGGQSIPDGERWHGSPAQKTGADY 217 (695)
T ss_pred ECCCCEecCCcccCCCCEEEeeCCEEecccc
Confidence 999999999 89999999999999998854
No 54
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.45 E-value=1e-12 Score=113.47 Aligned_cols=107 Identities=33% Similarity=0.443 Sum_probs=87.8
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
...+++++.||+++.|.+ +++|+++++||++|.|+++++|+. +++||++++|+++++|.++++||++|+|
T Consensus 93 ~a~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~i 162 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMA--GAVINPDVRIGDNVIINTGAIVEH--------DCVIGDYVHIAPGVTLSGGVVIGEGVFI 162 (201)
T ss_pred CeEECCCCEECCCCEECC--CCEECCCCEECCCcEECCCCEEcC--------CCEECCCCEECCCCEEeCCcEECCCCEE
Confidence 455777778888888877 778888888888888888888873 6899999999999999999999999999
Q ss_pred CCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCC
Q 039045 241 GAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPG 278 (295)
Q Consensus 241 gagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~ 278 (295)
|++++|.+++ .++ .++|.++.+.+..+....+.+.|+
T Consensus 163 g~~~~v~~~~~i~~~-~~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 163 GAGATIIQGVTIGAG-AIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CCCCEEeCCCEECCC-CEECCCCEECCcCCCCCEEEeccC
Confidence 9999999874 444 456888998887766666666664
No 55
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.44 E-value=9.7e-13 Score=128.08 Aligned_cols=55 Identities=38% Similarity=0.660 Sum_probs=52.2
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
+++||++|+||++++|.++++||++++||+||+|.+|||++++++|+|.++++..
T Consensus 383 ~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~~ 437 (448)
T PRK14357 383 PTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKEG 437 (448)
T ss_pred CcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEeccC
Confidence 5899999999999999999999999999999999999999999999999998753
No 56
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=1.3e-12 Score=123.56 Aligned_cols=54 Identities=35% Similarity=0.574 Sum_probs=49.2
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
..++||++++||+|+.+..+|+||+++.||+||+|++|||++++.++.+-...+
T Consensus 396 ~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~ 449 (460)
T COG1207 396 FKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNK 449 (460)
T ss_pred ceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeec
Confidence 448999999999999999999999999999999999999999999987666554
No 57
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.43 E-value=2e-12 Score=110.43 Aligned_cols=105 Identities=35% Similarity=0.484 Sum_probs=83.5
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
..+++++.||.++.|.+ +++|+++++||++|.|+++++|+. +++||++|+|++++++.++++||++|+||
T Consensus 91 ~~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 91 AVVSPSAVIGEGCVIMA--GAVINPDARIGDNVIINTGAVIGH--------DCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred eEECCCCEECCCCEEcC--CCEECCCCEECCCeEECCCCEECC--------CCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 45666777777777776 778888888888888888888873 78999999999999999999999999999
Q ss_pred CCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCC
Q 039045 242 AGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECP 277 (295)
Q Consensus 242 agsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p 277 (295)
.+++|.++ +.+++ ++|..+.+.+..+....+.+.|
T Consensus 161 ~~~~v~~~~~ig~~~-~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 161 AGATIIQGVTIGAGA-IIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CCCEEcCCCEECCCC-EECCCCEEcCCCCCCCEEEecC
Confidence 99999987 44554 5688888888765444434443
No 58
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.42 E-value=2.9e-13 Score=120.98 Aligned_cols=78 Identities=28% Similarity=0.438 Sum_probs=70.1
Q ss_pred CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc
Q 039045 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258 (295)
Q Consensus 181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G 258 (295)
.+++|..++||+||.|+.|+.|+|.-.......+.|||||.||+|+.+..||.+|++|+|++|.+|++|+|.+....|
T Consensus 150 ~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g 227 (271)
T COG2171 150 RASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG 227 (271)
T ss_pred eeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEEeecc
Confidence 677777788999999999999988666566678899999999999999999999999999999999999999888887
No 59
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.42 E-value=1.6e-12 Score=108.88 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=81.8
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEc----------cCCEECCCCCCCCCCCCEECCCCEECCCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSIL----------HHVTLGGTGKASGDRHPKIGDGVLIGAGATIL 229 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~----------~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~ 229 (295)
++.|++++.|++++.|... ..++||+++.|++++.|. +++.|+..... .+++||++++|++++.|.
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i---~~~~Ig~~~~Ig~~~~v~ 93 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL---HGCTIGDNCLIGMGAIIL 93 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE---eeeEECCCCEECCCCEEc
Confidence 4667888888888877642 346777777777776443 33344332222 347999999999999999
Q ss_pred CCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCC
Q 039045 230 GNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEK 269 (295)
Q Consensus 230 ~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~ 269 (295)
++++||++|+|+++++|.++ +|+++++.|.|++++++.+.
T Consensus 94 ~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~ 135 (153)
T cd04645 94 DGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTD 135 (153)
T ss_pred CCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCH
Confidence 99999999999999999985 89999999999999887753
No 60
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.42 E-value=8.4e-13 Score=118.16 Aligned_cols=115 Identities=28% Similarity=0.430 Sum_probs=83.0
Q ss_pred eEeCCCceecCceEEcCC----cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC-------
Q 039045 162 VDIHPAAKIGKGILFDHA----TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG------- 230 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~----~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~------- 230 (295)
+.|++++.|+.++.|+++ .+++|+.+++||++|.|+++++|++ ++.||++|+||++++|.+
T Consensus 87 ~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~--------~s~Ig~~~~Ig~~~~I~~~~~~~~~ 158 (231)
T TIGR03532 87 ARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGG--------RATVGKNVHIGAGAVLAGVIEPPSA 158 (231)
T ss_pred cEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCC--------CcEECCCcEEcCCcEEccccccccC
Confidence 345555544444444440 0444555556666666666666642 689999999999999975
Q ss_pred -CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 231 -NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 231 -~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
+++||++|+||++++|.+++. ....++|..+.+.+..+......+.|++.++..
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~ 214 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQV 214 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccC
Confidence 799999999999999998853 556677888888888777777789999877653
No 61
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.41 E-value=2.8e-13 Score=119.16 Aligned_cols=112 Identities=31% Similarity=0.358 Sum_probs=91.9
Q ss_pred ceeeEeCCCceecCceEEcCCc-----CeEEC------------CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCE
Q 039045 159 VFAVDIHPAAKIGKGILFDHAT-----GVVIG------------ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVL 221 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~~-----~v~IG------------~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~ 221 (295)
...+.||+++.|-+.++|..++ -+.|| ++|+||++|++..+++|+| |+.|||.+.
T Consensus 79 ~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG--------HV~igD~ai 150 (260)
T COG1043 79 PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG--------HVEVGDYAI 150 (260)
T ss_pred ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEec--------cEEECCEEE
Confidence 4567888888888888887653 23344 4577888888888888875 999999999
Q ss_pred ECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCCCCCCCCCCCC
Q 039045 222 IGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKEKTSSNEECPG 278 (295)
Q Consensus 222 IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~ 278 (295)
||..+-|-.-|+||++|+||..|-|.+||||++++.|+||++-+-...+.+..+.+.
T Consensus 151 iGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~ 207 (260)
T COG1043 151 IGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR 207 (260)
T ss_pred EcCcceEEEEEEEcchheeccccccccCCCCeEEecCCcccccccceeeeeccCCCH
Confidence 999999999999999999999999999999999999999999876655554455544
No 62
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=126.02 Aligned_cols=55 Identities=35% Similarity=0.610 Sum_probs=51.4
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.++||++|+||++++|.++++||++++||+||+|.+|+|+++++.|+|....+..
T Consensus 380 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~~~~ 434 (446)
T PRK14353 380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQETKPG 434 (446)
T ss_pred CcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceEeccc
Confidence 5789999999999999999999999999999999999999999999999876643
No 63
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.41 E-value=1.3e-12 Score=127.58 Aligned_cols=56 Identities=32% Similarity=0.614 Sum_probs=51.1
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE-ccCcEEecCCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGGKE 268 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~-G~PA~~i~~~~ 268 (295)
.++|||+|+||.+++|.++++||++++||+||+|++|||+++++. |.|++.+++-.
T Consensus 394 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~~~~~ 450 (456)
T PRK09451 394 KTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQGWQ 450 (456)
T ss_pred CCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceeccccc
Confidence 478999999999999999999999999999999999999999985 58999987643
No 64
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.41 E-value=2.1e-12 Score=112.14 Aligned_cols=48 Identities=40% Similarity=0.699 Sum_probs=46.3
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNP 260 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~P 260 (295)
+++||++|+||.+++|.++++||++++|++|++|++|+|+++++.|.|
T Consensus 144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~ 191 (193)
T cd03353 144 RTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARA 191 (193)
T ss_pred CCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEecc
Confidence 578999999999999999999999999999999999999999999976
No 65
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=2.2e-12 Score=126.97 Aligned_cols=55 Identities=38% Similarity=0.599 Sum_probs=50.8
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEE-ccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAV-GNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~-G~PA~~i~~~ 267 (295)
.++||++|+||.+++|.++++||++++||+|++|.+|+|++++++ |.|++.+++-
T Consensus 399 ~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~ 454 (482)
T PRK14352 399 RTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGW 454 (482)
T ss_pred CCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccc
Confidence 488999999999999999999999999999999999999999764 9999999863
No 66
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=2.1e-12 Score=124.97 Aligned_cols=54 Identities=30% Similarity=0.523 Sum_probs=48.7
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc-cCcEEecC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG-NPARLVGG 266 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G-~PA~~i~~ 266 (295)
.++||++|+||++++|.++++||++|+||+|++|.+|+|++++++| .|++..++
T Consensus 367 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~ 421 (430)
T PRK14359 367 KTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIKN 421 (430)
T ss_pred CCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehhh
Confidence 4799999999999999999999999999999999999999999987 56665543
No 67
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.36 E-value=3e-12 Score=105.77 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=34.5
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V 250 (295)
.++.||++|+||++++| ++.||++|+||+|++|+++.
T Consensus 72 ~pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 72 NVISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred cCEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCe
Confidence 45899999999999999 79999999999999999984
No 68
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.36 E-value=6.3e-12 Score=92.07 Aligned_cols=77 Identities=42% Similarity=0.592 Sum_probs=53.8
Q ss_pred eecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 169 KIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 169 ~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
+||+++.|++ +++|++++.||++|.|+++++|++.........++||++++|+.+++|.++++||++++|+++++|.
T Consensus 2 ~ig~~~~i~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 2 FIGEGVKIHP--KAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred EECCCeEECC--CCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence 3444444444 4444445666666666666666543221122458999999999999999999999999999999874
No 69
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.35 E-value=6.5e-12 Score=122.90 Aligned_cols=53 Identities=25% Similarity=0.475 Sum_probs=49.1
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
.+.||++|+||.+++|.++++||++|+|++||+|.+|||++++++|.+..+.+
T Consensus 397 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~~~~~~~~~~~~ 449 (459)
T PRK14355 397 RTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDSLAIARSPQVNK 449 (459)
T ss_pred CcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCcEEEeccceecc
Confidence 47899999999999999999999999999999999999999999997777654
No 70
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.33 E-value=1.3e-11 Score=98.34 Aligned_cols=92 Identities=25% Similarity=0.341 Sum_probs=60.9
Q ss_pred CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------CCCCEECCCCEECCCCE
Q 039045 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---------------LGNVKIGEGAKVGAGSV 245 (295)
Q Consensus 181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---------------~~~v~IG~~~~Igagsv 245 (295)
+++|+.+++||++|.|++++.|+. +++||++|+|++++++ .++++||++|+||++++
T Consensus 10 ~~~i~~~~~Ig~~~~I~~~~~i~~--------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 10 NVFIENDVKIGDNVKIQSNVSIYE--------GVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CcEECCCcEECCCcEECCCcEEeC--------CeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 334444455555555555555542 4566666666666655 57889999999999999
Q ss_pred EcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045 246 VLID--VPARATAVGNPARLVGGKEKTSSNEECPGESM 281 (295)
Q Consensus 246 V~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~ 281 (295)
|.++ +.++ ..+|..+.+.+..+....+.+.|++.+
T Consensus 82 v~~~~~ig~~-~~i~~~~~v~~~i~~~~~~~G~pa~~~ 118 (119)
T cd03358 82 ILPGVTIGEY-ALVGAGAVVTKDVPPYALVVGNPARII 118 (119)
T ss_pred EeCCcEECCC-CEEccCCEEeCcCCCCeEEecCcceec
Confidence 9876 3444 566777888777666667778888764
No 71
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.32 E-value=7.9e-12 Score=114.07 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=64.3
Q ss_pred eeEeCCCceecCceEEcCCc--------CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHAT--------GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~--------~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v 232 (295)
|..|++++.|..+++|..+. ..+|+++|+||++|.|+.++.|+|+-...+...++||++|+||+||+| ++
T Consensus 165 GAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI 242 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GI 242 (319)
T ss_pred ccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--Ce
Confidence 44444444444444444421 134567778888888888888766433333456899999999999999 99
Q ss_pred EECCCCEECCCCEEcCCCC
Q 039045 233 KIGEGAKVGAGSVVLIDVP 251 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~Vp 251 (295)
.||++|+||+|++|+++.|
T Consensus 243 ~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 243 SLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred EECCCCEECCCCEEeCCeE
Confidence 9999999999999999854
No 72
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.32 E-value=1.2e-11 Score=108.47 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=79.0
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------------
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL-------------- 229 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~-------------- 229 (295)
+|+++.|.+++++..+.++.||+++.|+.+|+|.++ ..++||++|.||++|+|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~------------~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g 125 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDD------------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNG 125 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecC------------CCEEECCCCEECCCCEEEeCCCCCChhhcccc
Confidence 677777777776654445555555555444444322 146888888888888875
Q ss_pred ----CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 230 ----GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 230 ----~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
.+++||++|+||++++|.+++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus 126 ~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~ 185 (203)
T PRK09527 126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREI 185 (203)
T ss_pred ccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccC
Confidence 2489999999999999999853 555677888888888877888889999877654
No 73
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.32 E-value=8.1e-12 Score=127.89 Aligned_cols=99 Identities=31% Similarity=0.465 Sum_probs=73.2
Q ss_pred ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA 238 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~ 238 (295)
..|++||+++.|+.....++ ..++||++|.|+++|.|..+..-. +.. ..++++||++|+||++|+|+++++||++|
T Consensus 595 ~lGa~IG~~v~i~~~~~~~~-dlv~IGd~~~I~~~~~i~~h~~~~--~~~-~~~~v~IG~~~~IG~~a~V~~g~~IGd~a 670 (695)
T TIGR02353 595 LLGVKIGRGVYIDGTDLTER-DLVTIGDDSTLNEGSVIQTHLFED--RVM-KSDTVTIGDGATLGPGAIVLYGVVMGEGS 670 (695)
T ss_pred HCCCEECCCeEECCeeccCC-CCeEECCCCEECCCCEEEeccccc--ccc-ccCCeEECCCCEECCCCEECCCCEECCCC
Confidence 34666666666665544443 246677777776666665432111 111 12479999999999999999999999999
Q ss_pred EECCCCEEcC--CCCCCcEEEccCc
Q 039045 239 KVGAGSVVLI--DVPARATAVGNPA 261 (295)
Q Consensus 239 ~IgagsvV~~--~Vp~~~~v~G~PA 261 (295)
+||++|+|.+ ++|+++++.|+||
T Consensus 671 ~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 671 VLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred EECCCCEEcCCcccCCCCEEEeccC
Confidence 9999999999 6999999999997
No 74
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.31 E-value=5.4e-12 Score=116.61 Aligned_cols=106 Identities=33% Similarity=0.463 Sum_probs=84.7
Q ss_pred eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATILGNVKI 234 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~~v~I 234 (295)
.+.|++++.||.+++|+++ ..++||+++.|.+-|.|+++|+||......+ ...++||++|.||..+.|.+..+|
T Consensus 202 ~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~I 281 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEI 281 (338)
T ss_pred eEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEE
Confidence 4777777788888888773 1277777777777777777777775533221 245899999999999999999999
Q ss_pred CCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045 235 GEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266 (295)
Q Consensus 235 G~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~ 266 (295)
||++.|++.+-|.++||++..+.|.|++.+++
T Consensus 282 gD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~ 313 (338)
T COG1044 282 GDGVTIGARSGVMASITEPGYSGGIPAQPIKE 313 (338)
T ss_pred cCCCEEecccccccccCCCceeccCCCchHHH
Confidence 99999999999999999888888899998875
No 75
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.29 E-value=4.7e-11 Score=98.54 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=70.2
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------CCC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------GNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------~~v 232 (295)
++.|++++.|++++.|.+ ++.++.++.||++|.|+++++|+. +++||++|.|+++++|. .++
T Consensus 7 ~~~i~~~~~Ig~~~~I~~--~~~i~~~~~IG~~~~I~~~~~I~~--------~~~IG~~~~I~~~~~igg~~~~~~~~~v 76 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMM--PSYVNIGAYVDEGTMVDSWATVGS--------CAQIGKNVHLSAGAVIGGVLEPLQATPV 76 (139)
T ss_pred CcEECCCCEECCCCEECC--CCEEccCCEECCCeEEcCCCEECC--------CCEECCCCEECCCCEECCcccccccCCe
Confidence 455666677777777766 677777788888888888888873 68999999999999987 358
Q ss_pred EECCCCEECCCCEEcCCCC-CCcEEEccCcEEec
Q 039045 233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVG 265 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~ 265 (295)
+||++|+||++++|..++- ....++|.-+.+..
T Consensus 77 ~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~ 110 (139)
T cd03350 77 IIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQ 110 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCCEEcCCCEEcC
Confidence 8999999999999887742 33344555555553
No 76
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.28 E-value=3.8e-11 Score=104.99 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKEKTSSNEECPGESMDH 283 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~ 283 (295)
+++||++++|++++.|.++++||++|+||++++|..+ +++++++ |.-+.+.+..+..+.+.+.|++.++.
T Consensus 132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i-~~~s~v~~~~~~~~~~~G~pa~~~~~ 203 (205)
T cd03352 132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVI-GAGSGVTSIVPPGEYVSGTPAQPHRE 203 (205)
T ss_pred CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEE-cCCCEEeeECCCCCEEEeecCchhhh
Confidence 4566666667777777789999999999999999998 5666665 44577778788888888999987654
No 77
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.28 E-value=1.2e-11 Score=114.26 Aligned_cols=79 Identities=41% Similarity=0.570 Sum_probs=64.3
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
..|+|++.+++++.|++ +++|+.++.||+||.|++++.||. +++||++++|.+|++|..++.||++|.|+
T Consensus 106 A~i~~~A~i~~~~~ig~--~~vI~~~v~IG~~~~I~~~~vIg~--------~~~IG~~~~i~~~v~I~~~~~IG~~v~I~ 175 (338)
T COG1044 106 AVIDPTATIGKNVSIGP--NVVIGAGVVIGENVVIGAGAVIGE--------NVKIGDGTVIHPNVTIYHNVVIGNNVIIH 175 (338)
T ss_pred ccccCcCccCCCCccCC--CeEECCCCEECCCcEECCCCEECC--------CcEECCCcEEcCCCEEecCcEECCceEEC
Confidence 44777788888888877 788888888888888888888873 78888888888888888888888888888
Q ss_pred CCCEEcCCC
Q 039045 242 AGSVVLIDV 250 (295)
Q Consensus 242 agsvV~~~V 250 (295)
+|++|..|.
T Consensus 176 ~GavIG~dg 184 (338)
T COG1044 176 SGAVIGADG 184 (338)
T ss_pred CCCEEccCc
Confidence 888888773
No 78
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.5e-11 Score=118.50 Aligned_cols=52 Identities=31% Similarity=0.567 Sum_probs=49.2
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEe
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLV 264 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i 264 (295)
+++||++++||.+++|.++++||++++||+||+|.+|+|++++++|.|.-+.
T Consensus 393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~ 444 (458)
T PRK14354 393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVN 444 (458)
T ss_pred CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceec
Confidence 5889999999999999999999999999999999999999999999987763
No 79
>PRK10502 putative acyl transferase; Provisional
Probab=99.27 E-value=2.4e-11 Score=105.00 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=87.3
Q ss_pred hhccccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE----
Q 039045 153 QSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI---- 228 (295)
Q Consensus 153 ~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I---- 228 (295)
...+...++..||+++.|++++.|..+..++||+++.||+++.|.... .++||++|.|+.+++|
T Consensus 43 r~~~lr~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~------------~v~IG~~~~I~~~~~I~~~~ 110 (182)
T PRK10502 43 RAFLLRLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLG------------EITIGAHCVISQKSYLCTGS 110 (182)
T ss_pred HHHHHHHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccC------------ceEECCCcEECCCeEEECCC
Confidence 444445678889999999999988765567788887777777776421 2345555555555444
Q ss_pred -----------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 229 -----------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 229 -----------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
.++++||++|+||++++|..++. ....++|..+.+.+..+....+.+.|++.++..
T Consensus 111 h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 111 HDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR 178 (182)
T ss_pred CCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence 35689999999999999998853 344666788888888887778889999876543
No 80
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=3.5e-11 Score=117.46 Aligned_cols=55 Identities=36% Similarity=0.599 Sum_probs=50.2
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.++||+++++|.+++|.++++||++++||+|++|.+|+|++++++|..-......
T Consensus 398 ~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ 452 (456)
T PRK14356 398 RTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKNLPR 452 (456)
T ss_pred CCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecceeehhh
Confidence 4799999999999999999999999999999999999999999999877665543
No 81
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.26 E-value=8.9e-11 Score=100.10 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=68.6
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEE---------------
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATI--------------- 228 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I--------------- 228 (295)
+++++.|..++.+..+.++.||+++.|+.++.|.+. ..++||++|+|+++|+|
T Consensus 45 ~~~~~~i~~~~~~~~~~~i~IG~~v~I~~~~~i~~~------------~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~ 112 (169)
T cd03357 45 VGENVYIEPPFHCDYGYNIHIGDNFYANFNCTILDV------------APVTIGDNVLIGPNVQIYTAGHPLDPEERNRG 112 (169)
T ss_pred cCCCCEEcCCEEEEeCCcCEECCCceEcCCEEEecc------------CcEEECCCCEECCCCEEEeCCCCCChhHcccc
Confidence 455566666555544334444444444444433311 13566666666666666
Q ss_pred ---CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045 229 ---LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES 280 (295)
Q Consensus 229 ---~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~ 280 (295)
.++++||++|+||++++|.+++. ....++|..+.+.+..+....+.+.|++.
T Consensus 113 ~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkv 168 (169)
T cd03357 113 LEYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARV 168 (169)
T ss_pred ceecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEE
Confidence 45788999999999999988753 55567788889988887777778888864
No 82
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.25 E-value=7.4e-11 Score=107.01 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcccc
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGESMD 282 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~ 282 (295)
++++||++|+|++++.|.++++||++|+||+++.|.+++ .+++++ |..+.+-+.........+.|++.+.
T Consensus 118 ~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~I-g~~s~V~~~i~~~~~~~G~pa~~~~ 189 (254)
T TIGR01852 118 HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMI-GGLSAVSKDVPPYGLVEGNRARLRG 189 (254)
T ss_pred cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEE-eeeeeEeeecCCCcEEecCcCeecc
Confidence 467889999999999999999999999999999999884 466544 4455555555555555678888754
No 83
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.25 E-value=9.6e-11 Score=101.33 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=68.3
Q ss_pred EECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC------------------CCCEECCCCEECCCC
Q 039045 183 VIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL------------------GNVKIGEGAKVGAGS 244 (295)
Q Consensus 183 ~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~------------------~~v~IG~~~~Igags 244 (295)
.+|.++.||+++.|+.+++|+.. ..++||++|.|+++|+|. ++++||++|+||+++
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~------~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a 142 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDV------CPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRA 142 (183)
T ss_pred eecCCcEEcCCcEECCceEEecC------ceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCC
Confidence 34445555555555555555432 124888888888888884 679999999999999
Q ss_pred EEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045 245 VVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH 283 (295)
Q Consensus 245 vV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~ 283 (295)
+|.+++- ....++|.-+.+.+..+......++|++.+++
T Consensus 143 ~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~ 182 (183)
T PRK10092 143 VINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred EECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence 9998853 44456788888888877777778999987654
No 84
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.24 E-value=1.1e-10 Score=101.61 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=75.9
Q ss_pred ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC---------
Q 039045 159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------- 229 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------- 229 (295)
...+.+|+++.++.++.++. .......||++|.|+++++|... ..++||++|.|++++.|.
T Consensus 41 ~~~I~iG~~v~i~~~~ri~~----~~~~~i~IG~~v~Ig~~v~I~~~------~~v~IG~~v~Ig~~v~I~~~~hg~~~~ 110 (192)
T PRK09677 41 DGSINFGEGFTSGVGLRLDA----FGRGKLFFGDNVQVNDYVHIACI------ESITIGRDTLIASKVFITDHNHGSFKH 110 (192)
T ss_pred CCeEEECCceEECCCeEEEe----cCCCeEEECCCCEECCCcEEccC------ceEEECCCCEECCCeEEECCCCccccc
Confidence 34455666666666665521 11233455555555555555421 135677777777766664
Q ss_pred ------------------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 230 ------------------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 230 ------------------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
++++||++|+||++++|.+++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~ 184 (192)
T PRK09677 111 SDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKY 184 (192)
T ss_pred cccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEecc
Confidence 3578999999999999998753 555677888888888777777789999877554
No 85
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.24 E-value=5.1e-11 Score=112.64 Aligned_cols=37 Identities=41% Similarity=0.639 Sum_probs=15.4
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL 202 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I 202 (295)
|++++.||++++|++ +++|++++.||++|.|+++++|
T Consensus 109 v~~~~~ig~~~~I~~--~~~I~~~~~IG~~~~I~~~~~I 145 (343)
T PRK00892 109 IDPSAKIGEGVSIGP--NAVIGAGVVIGDGVVIGAGAVI 145 (343)
T ss_pred ECCCCEECCCCEECC--CeEEeccceeCCCcEECCCCEE
Confidence 444444444444443 3344444444444444443333
No 86
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.23 E-value=1e-10 Score=102.15 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=78.6
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCc---------EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETA---------VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN 231 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~---------~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~ 231 (295)
++.|++++.|..++.|++ ++.|+.++ +||++|.|+++|+|+.... .++.||+++.||+++++ .+
T Consensus 16 ~a~I~~~a~I~g~V~IG~--~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~----~~siIg~~~~Ig~~a~i-~g 88 (196)
T PRK13627 16 TAFVHPSAVLIGDVIVGA--GVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD----TDTIVGENGHIGHGAIL-HG 88 (196)
T ss_pred CeEECCCCEEECceEECC--CCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC----CCCEECCCCEECCCcEE-ee
Confidence 344555555444444444 44444443 5677788888888865332 36899999999999976 67
Q ss_pred CEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCC--CCCCCCCCCCCccccc
Q 039045 232 VKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGK--EKTSSNEECPGESMDH 283 (295)
Q Consensus 232 v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~--~~~~~~~~~p~~~~~~ 283 (295)
++||++|+||.+++|..++ .++ .++|.-+.+.+.. +....+.+.|++..+.
T Consensus 89 ~vIG~~v~IG~ga~V~~g~~IG~~-s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~ 143 (196)
T PRK13627 89 CVIGRDALVGMNSVIMDGAVIGEE-SIVAAMSFVKAGFQGEKRQLLMGTPARAVRS 143 (196)
T ss_pred EEECCCCEECcCCccCCCcEECCC-CEEcCCCEEeCCcCcCCCcEEEecCCEEecc
Confidence 8899999999999998873 444 5556666666654 3455667899887654
No 87
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.22 E-value=7.1e-11 Score=107.11 Aligned_cols=37 Identities=30% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCC
Q 039045 213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~ 249 (295)
.++||++|.|+++|+|.. .++||++|.|++++.|..+
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~ 120 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHD 120 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCC
Confidence 467777777777777753 4777777777777777544
No 88
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.22 E-value=8.7e-11 Score=106.69 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC--CCCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV--PARATAVGNPARLVGGKEKTSSNEECPGES 280 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V--p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~ 280 (295)
++++||++|+|+.++++.++++||++|+||+++.|.+.+ .+++.+ |.-+.+.+..+......++|++.
T Consensus 118 hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~V-g~gs~V~~dVpp~~i~~G~pa~~ 187 (255)
T PRK12461 118 HDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMM-AGGSRISKDVPPYCMMAGHPTNV 187 (255)
T ss_pred CCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEE-CCCceEeccCCCCeEEecCcceE
Confidence 468888888888999999999999999999999999985 455555 44577777777666667889874
No 89
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.22 E-value=1e-10 Score=109.82 Aligned_cols=76 Identities=36% Similarity=0.550 Sum_probs=46.5
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
..|++++.||+++.|.+ +++|+++++||++|.|+.+++|++ +++||++|.|+++++|.++++||++|+|+
T Consensus 98 a~i~~~a~Ig~~v~I~~--~~~I~~~v~IG~~~~I~~~~~Ig~--------~~~IG~~~~I~~~~~I~~~~~IG~~~~I~ 167 (324)
T TIGR01853 98 AVVDPSAKIGDGVTIGP--NVVIGAGVEIGENVIIGPGVVIGD--------DVVIGDGSRIHPNVVIYERVQLGKNVIIH 167 (324)
T ss_pred CEeCCCcEECCCCEECC--CcEEccCcEECCcEEECCCCEECC--------cceeCCCceECCCcEECCCCEECCCCEEC
Confidence 44666666666666665 566666666666666666666653 45666666666666665566666666666
Q ss_pred CCCEEc
Q 039045 242 AGSVVL 247 (295)
Q Consensus 242 agsvV~ 247 (295)
++++|.
T Consensus 168 ~~~vIg 173 (324)
T TIGR01853 168 SGAVIG 173 (324)
T ss_pred CCcEEC
Confidence 666664
No 90
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.21 E-value=9.5e-11 Score=106.84 Aligned_cols=37 Identities=30% Similarity=0.200 Sum_probs=21.4
Q ss_pred CCEECCCCEECCCCEECCC-------CEECCCCEECCCCEEcCC
Q 039045 213 HPKIGDGVLIGAGATILGN-------VKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~-------v~IG~~~~IgagsvV~~~ 249 (295)
.+.||++|.|+.+++|..+ ++||++|.|++++.|..+
T Consensus 80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~ 123 (262)
T PRK05289 80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHD 123 (262)
T ss_pred eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCe
Confidence 3556666666666666433 356666666666655544
No 91
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.20 E-value=1.9e-10 Score=104.31 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=63.9
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC--------CCC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL--------GNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~--------~~v 232 (295)
+..|.+++.||+++.|.+ + .+..++.||++|.|..+++||. ++.||++|.|++++.|. .++
T Consensus 106 ~a~i~~ga~Ig~~vvI~p--~-~Vniga~IGeGt~I~~~a~IG~--------~v~IG~nv~I~~g~~IgG~~ep~~~~~V 174 (269)
T TIGR00965 106 GAAVRQGAFIAKNVVLMP--S-YVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPT 174 (269)
T ss_pred CcEECCCcEECCCCEEee--e-EEcCCcEECCCCEECCCcEECC--------CCEECCCCEEcCCcccCCCcccCCCCCe
Confidence 344555555555555554 2 3455577888888888888874 68999999999988885 458
Q ss_pred EECCCCEECCCCEEcCCCC-CCcEEEccCcEE
Q 039045 233 KIGEGAKVGAGSVVLIDVP-ARATAVGNPARL 263 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~ 263 (295)
+||++|+||++++|.+++- ....++|.-+.+
T Consensus 175 iIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 175 IIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 8999999999999888743 333344444444
No 92
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.18 E-value=2.7e-10 Score=95.71 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=76.1
Q ss_pred eCCCceecCceEEcCCcCeEECC---CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGE---TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~---~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
|..++.||+++.|.+ +++|.. .++||++|.|+++++|... ...+++||++|+|+.++.+ .+++||++|+|
T Consensus 15 i~g~v~IG~~~~I~~--~~~i~~~~~~i~IG~~~~Ig~~~~I~~~----~~~~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~I 87 (155)
T cd04745 15 LIGDVIIGKNCYIGP--HASLRGDFGRIVIRDGANVQDNCVIHGF----PGQDTVLEENGHIGHGAIL-HGCTIGRNALV 87 (155)
T ss_pred EEccEEECCCCEECC--CcEEeCCCCcEEECCCCEECCCCEEeec----CCCCeEEcCCCEECCCcEE-ECCEECCCCEE
Confidence 333444555555554 444443 3577788888888888421 1136899999999999977 57999999999
Q ss_pred CCCCEEcCC--CCCCcEEEccCcEEecC--CCCCCCCCCCCCccccc
Q 039045 241 GAGSVVLID--VPARATAVGNPARLVGG--KEKTSSNEECPGESMDH 283 (295)
Q Consensus 241 gagsvV~~~--Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~ 283 (295)
|++++|..+ +.++ .++|.-+.+.+. ......+.+.|++.++.
T Consensus 88 g~~~~I~~g~~Ig~~-~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~ 133 (155)
T cd04745 88 GMNAVVMDGAVIGEE-SIVGAMAFVKAGTVIPPRSLIAGSPAKVIRE 133 (155)
T ss_pred CCCCEEeCCCEECCC-CEECCCCEeCCCCEeCCCCEEecCCceEecc
Confidence 999999886 3444 455666666552 33444556889887765
No 93
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.17 E-value=2.6e-10 Score=96.87 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=84.9
Q ss_pred eEeCCCceecCceEEcCCcCeEEC---CCcEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIG---ETAVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGE 236 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG---~~~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~ 236 (295)
..|.+++.||+++.|.+ +++|. ..++||++|.|+++++|...... .....+.||+++.|..++.|.+ ++||+
T Consensus 12 a~i~g~v~IG~~~~I~~--~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IGd 88 (164)
T cd04646 12 SEIRGDVTIGPGTVVHP--RATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIGN 88 (164)
T ss_pred CEEcCceEECCCCEEcC--CeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEECC
Confidence 34556667777777776 66664 44788999999999999754221 1123578999999999999854 99999
Q ss_pred CCEECCCCEEcCCCC-CCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045 237 GAKVGAGSVVLIDVP-ARATAVGNPARLVGG--KEKTSSNEECPGESMDHT 284 (295)
Q Consensus 237 ~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~ 284 (295)
+|+||++++|.+++- ....++|.-+.+.+. .++.....+.|+...++.
T Consensus 89 ~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~ 139 (164)
T cd04646 89 NNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT 139 (164)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC
Confidence 999999999998743 445566666777664 344444456777666554
No 94
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.16 E-value=2.6e-10 Score=100.26 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=42.6
Q ss_pred CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 230 GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 230 ~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
.+++||++|+||.+++|..++- ....++|..+.+.+..+....+.+.|+..+++.
T Consensus 107 ~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~ 162 (204)
T TIGR03308 107 KRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR 162 (204)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence 4778888888888888887743 444667778888888777777789999888765
No 95
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.15 E-value=5.5e-10 Score=95.05 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=56.6
Q ss_pred eeEeCCCceecCceEEcCC--cCeEECCCcEEcCCcEEc----cCCEECCCCCCCC----CCCCEECCCCEECCCCEECC
Q 039045 161 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSIL----HHVTLGGTGKASG----DRHPKIGDGVLIGAGATILG 230 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~--~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I~~ 230 (295)
++.||+++.|++++.|... ..++||+++.|++++.|. +.+.||....... ..+++||++|+||+++.|.
T Consensus 20 ~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~- 98 (167)
T cd00710 20 DVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF- 98 (167)
T ss_pred eEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-
Confidence 4556666666666666532 235666666666555541 1222222211111 1247888888888888885
Q ss_pred CCEECCCCEECCCCEEcC-CCCCCcEE
Q 039045 231 NVKIGEGAKVGAGSVVLI-DVPARATA 256 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV~~-~Vp~~~~v 256 (295)
+++||++|+||++|+|.. .++++.++
T Consensus 99 ~~~Ig~~~~Ig~~s~i~~~~i~~~~~v 125 (167)
T cd00710 99 NAKVGDNCVIGHNAVVDGVEIPPGRYV 125 (167)
T ss_pred CCEECCCCEEcCCCEEeCCEeCCCCEE
Confidence 688888888888888865 45666655
No 96
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.15 E-value=2.2e-10 Score=113.02 Aligned_cols=47 Identities=40% Similarity=0.645 Sum_probs=44.1
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEc
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVG 258 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G 258 (295)
..++||++|+||++++|.++++||++++|++||+|.+|+|++.++++
T Consensus 398 ~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~ 444 (481)
T PRK14358 398 HQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVA 444 (481)
T ss_pred CCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEe
Confidence 34799999999999999999999999999999999999999999885
No 97
>PLN02472 uncharacterized protein
Probab=99.12 E-value=4.8e-10 Score=101.19 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=73.7
Q ss_pred CceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 167 AAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 167 ~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
++.||+++.|.+ +++|..+ .+||++|.|+++|+|+..... .-..+++||++|.||++|+| .+++||++|.||
T Consensus 77 ~V~Ig~~a~I~~--gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L-~~~~Igd~v~IG 153 (246)
T PLN02472 77 QVTVWDGASVWN--GAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL-RSCTIEPECIIG 153 (246)
T ss_pred CEEECCCCEEcC--CCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE-CCeEEcCCCEEC
Confidence 344444444444 3333322 568888899999988643211 11136899999999999988 589999999999
Q ss_pred CCCEEcCCC--CCCcEEEccCcEEec--CCCCCCCCCCCCCccccc
Q 039045 242 AGSVVLIDV--PARATAVGNPARLVG--GKEKTSSNEECPGESMDH 283 (295)
Q Consensus 242 agsvV~~~V--p~~~~v~G~PA~~i~--~~~~~~~~~~~p~~~~~~ 283 (295)
.+++|..+. ..+ .++|.-+.+-. ....+..+.+.|++.++.
T Consensus 154 ~~svI~~gavIg~~-~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~ 198 (246)
T PLN02472 154 QHSILMEGSLVETH-SILEAGSVLPPGRRIPTGELWAGNPARFVRT 198 (246)
T ss_pred CCCEECCCCEECCC-CEECCCCEECCCCEeCCCCEEEecCCEEecc
Confidence 999998873 344 44444444442 233445567889887654
No 98
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=4.4e-10 Score=109.43 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=51.2
Q ss_pred CCEECCCCEECCCCEE-------CCCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045 213 HPKIGDGVLIGAGATI-------LGNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES 280 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I-------~~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~ 280 (295)
+++||++|.||+++++ ..+++||++|+||++++|.+++. ....++|..+.+.+..+....+.+.|...
T Consensus 355 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~ 430 (446)
T PRK14353 355 DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQE 430 (446)
T ss_pred CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceE
Confidence 3577888888888876 34799999999999999998853 33445588998888877666555666543
No 99
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.12 E-value=3.1e-10 Score=93.89 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=71.8
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEc----cCCEECCCCCCCCCCCCEECCCCEECCCCEECCC----C
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSIL----HHVTLGGTGKASGDRHPKIGDGVLIGAGATILGN----V 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~----~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~----v 232 (295)
+..+.+.+.||+|++|.+ +.++..++.||++|.|. .+++|+ +++.||++|.|. +.+.++ +
T Consensus 7 ~~~V~~~a~IG~GtvI~~--gavV~~~a~IG~~~iIn~~ig~~a~Ig--------hd~~IG~~~~I~--~~l~G~~~~pV 74 (147)
T cd04649 7 ADRVRLGAYLAEGTTVMH--EGFVNFNAGTLGNCMVEGRISSGVIVG--------KGSDVGGGASIM--GTLSGGGNNVI 74 (147)
T ss_pred CCEECCCCEECCCcEECC--CCEEccCCEECCCeEECCcccCCEEEC--------CCCEECCCCEEE--EECCCCcccCE
Confidence 456777788888888887 77888888888888877 777776 467888888777 566677 9
Q ss_pred EECCCCEECCCCEEcCCCCCCcEEEccCcEEecCC
Q 039045 233 KIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGK 267 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~ 267 (295)
.||++|+||++++|.-.|+++ .++|.-+.+.+..
T Consensus 75 ~IG~~~~IG~ga~Igv~IG~~-~vIGaGsvV~k~t 108 (147)
T cd04649 75 SIGKRCLLGANSGIGISLGDN-CIVEAGLYVTAGT 108 (147)
T ss_pred EECCCCEECCCCEEeEEECCC-CEECCCCEEeCCe
Confidence 999999999999995556655 4556677776653
No 100
>PLN02296 carbonate dehydratase
Probab=99.12 E-value=5.9e-10 Score=101.83 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=77.0
Q ss_pred ceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCC--CCCCCCEECCCCEECCCCEECCCCEECCCCEECC
Q 039045 168 AKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKA--SGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGA 242 (295)
Q Consensus 168 a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~--~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Iga 242 (295)
+.||+++.|.+ +++|... ++||++|.|+++++|...... ....+++||++|+||++|+| .+++||++|+||.
T Consensus 71 V~IG~~~~I~~--gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI-~g~~Igd~v~IG~ 147 (269)
T PLN02296 71 VQVGRGSSIWY--GCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL-HGCTVEDEAFVGM 147 (269)
T ss_pred eEECCCCEECC--CCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee-cCCEECCCcEECC
Confidence 34555555554 4455443 378888888888888632111 11246899999999999987 6799999999999
Q ss_pred CCEEcCCC--CCCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045 243 GSVVLIDV--PARATAVGNPARLVGG--KEKTSSNEECPGESMDHT 284 (295)
Q Consensus 243 gsvV~~~V--p~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~ 284 (295)
+++|.+++ .++ .++|.-+.+.+. .+....+.+.|++.++..
T Consensus 148 ga~I~~gv~Ig~~-a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~ 192 (269)
T PLN02296 148 GATLLDGVVVEKH-AMVAAGALVRQNTRIPSGEVWAGNPAKFLRKL 192 (269)
T ss_pred CcEECCCeEECCC-CEECCCCEEecCCEeCCCeEEeccCcEEeCCC
Confidence 99999874 455 445555666655 334445568888876543
No 101
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.11 E-value=5.5e-10 Score=95.05 Aligned_cols=74 Identities=30% Similarity=0.384 Sum_probs=55.4
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
+.||++|.|+++++|.... ...+.||++++|++++.|.++++||++|+||++++|....-...+++|..+.+.+
T Consensus 43 v~IG~~~~I~~~~~i~~~~----~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 43 IIIGANVNIQDGVVIHALE----GYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred EEECCCCEECCCeEEEecC----CCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 3466666666666664211 1358899999999999999999999999999999998665455566777777753
No 102
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.09 E-value=6.8e-10 Score=96.75 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=62.2
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEec
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVG 265 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~ 265 (295)
++||++|.|+++|+|.+.. ..++.||++|.||.+++| .+++||++|.||.+++|..+ +.++ .++|.-+.+.+
T Consensus 48 i~Ig~~t~Ig~~~~I~~~~----~~~siIg~~~~Ig~~a~I-~~siIg~~~~IG~ga~I~~g~~IG~~-s~Vgags~V~~ 121 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGFP----GQDTVVEENGHVGHGAIL-HGCIVGRNALVGMNAVVMDGAVIGEN-SIVAASAFVKA 121 (192)
T ss_pred eEECCCCEECCCeEEeccC----CCCCeECCCCEECCCCEE-cCCEECCCCEECCCcccCCCeEECCC-CEEcCCCEECC
Confidence 4556777777777774321 136899999999999976 67999999999999999876 3444 44444555544
Q ss_pred C--CCCCCCCCCCCCccccc
Q 039045 266 G--KEKTSSNEECPGESMDH 283 (295)
Q Consensus 266 ~--~~~~~~~~~~p~~~~~~ 283 (295)
. ........+.|++..+.
T Consensus 122 ~~~ip~~~l~~G~Pak~i~~ 141 (192)
T TIGR02287 122 GAEMPAQYLVVGSPAKVIRE 141 (192)
T ss_pred CCEECCCeEEEccCCEEecc
Confidence 2 22344456789887764
No 103
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.09 E-value=9.1e-10 Score=93.09 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=10.7
Q ss_pred CCEECCCCEECCCCEEcCC
Q 039045 231 NVKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV~~~ 249 (295)
++.||++|+||.+++|.++
T Consensus 129 ~~iIg~~~~ig~~~~i~~g 147 (163)
T cd05636 129 GAIIGDGVKTGINVSLNPG 147 (163)
T ss_pred CcEEcCCeEECCCcEECCC
Confidence 4555555555555555554
No 104
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.08 E-value=3.1e-10 Score=104.29 Aligned_cols=60 Identities=25% Similarity=0.427 Sum_probs=44.3
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~ 249 (295)
++||++|.|+.++.|++.-...+...+.||++|+||+|++| ++.||++|+||+|++|+.+
T Consensus 225 avIGhds~IG~gasIg~tLsGg~~~~V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 225 VMVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred CEECCCCEECCCCEEeEEEeCCCceeEEECCCcEECCCCEE--eeEECCCCEECCCCEEeCC
Confidence 34555555555555543222222233899999999999999 9999999999999999987
No 105
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.04 E-value=2.2e-09 Score=90.18 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=75.9
Q ss_pred eCCCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
|.+.+.||+++.|.+ +++|... ++||++|.|+++++|.+... .+++||+++.|+.++.+ .++.||++|+|
T Consensus 15 i~~~v~iG~~~~I~~--~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~----~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~I 87 (154)
T cd04650 15 VIGDVVIGELTSVWH--YAVIRGDNDSIYIGKYSNVQENVSIHTDHG----YPTEIGDYVTIGHNAVV-HGAKVGNYVIV 87 (154)
T ss_pred EEeeEEECCCCEEcC--CeEEEcCCCcEEECCCCEECCCCEEEeCCC----CCeEECCCCEECCCcEE-ECcEECCCCEE
Confidence 444455556666655 5555544 57888888888888864211 35899999999999988 68899999999
Q ss_pred CCCCEEcCC--CCCCcEEEccCcEEec--CCCCCCCCCCCCCccccc
Q 039045 241 GAGSVVLID--VPARATAVGNPARLVG--GKEKTSSNEECPGESMDH 283 (295)
Q Consensus 241 gagsvV~~~--Vp~~~~v~G~PA~~i~--~~~~~~~~~~~p~~~~~~ 283 (295)
+.++++..+ +.+++++ |.-+.+.. +......+.+.|++.++.
T Consensus 88 g~~~~i~~~~~Ig~~~~v-g~~~~v~~g~~i~~~~v~~G~pa~~~~~ 133 (154)
T cd04650 88 GMGAILLNGAKIGDHVII-GAGAVVTPGKEIPDYSLVLGVPAKVVRK 133 (154)
T ss_pred cCCCEEeCCCEECCCCEE-CCCCEECCCcEeCCCCEEeccCceEecc
Confidence 999999876 3455444 43444432 233444556788887754
No 106
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.02 E-value=2.1e-09 Score=98.15 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=50.0
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC--------CC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG--------NV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~--------~v 232 (295)
++.|++++.|++++.|.+ ..++.++.||++|+|+.+++||. .+.||++|.|++++.|.+ ++
T Consensus 109 ~a~V~~ga~Ig~gavI~p---~~V~iGa~Ig~gt~I~~~a~IG~--------~a~IG~nv~I~~gv~I~g~~~~~~~~~v 177 (272)
T PRK11830 109 GAVVRRGAYIAPNVVLMP---SYVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLEPLQANPV 177 (272)
T ss_pred CeEECCCCEECCCcEEEE---EEECCCCEECCCcEEccccEECC--------CCEECCCcEECCCccCCCCccccCcCCe
Confidence 344555555555555552 34555667777777777777763 567777777777776654 46
Q ss_pred EECCCCEECCCCEEcCC
Q 039045 233 KIGEGAKVGAGSVVLID 249 (295)
Q Consensus 233 ~IG~~~~IgagsvV~~~ 249 (295)
+||++|+||++++|..+
T Consensus 178 iIgDnv~IGa~s~I~~G 194 (272)
T PRK11830 178 IIEDNCFIGARSEVVEG 194 (272)
T ss_pred EEcCCCEECCCCEEcCC
Confidence 77777777777666554
No 107
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=6.4e-10 Score=109.34 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=21.7
Q ss_pred cchhhcccchhhHHHHHHHHHHHHhc
Q 039045 118 FSHCLLNYKGFLACQAHRVAHKLWTQ 143 (295)
Q Consensus 118 ~~~~~~~~~gf~al~~~r~a~~l~~~ 143 (295)
|...+..++.|..+...-+.+|.|+.
T Consensus 272 yA~rv~n~~syd~vSkDiI~RW~YP~ 297 (673)
T KOG1461|consen 272 YAARVENLRSYDLVSKDIIQRWTYPL 297 (673)
T ss_pred hhhhhcccHHHHHHHHHHHHhhcccc
Confidence 77888888888888888888998874
No 108
>PRK10191 putative acyl transferase; Provisional
Probab=98.99 E-value=2.5e-09 Score=89.22 Aligned_cols=80 Identities=33% Similarity=0.498 Sum_probs=58.0
Q ss_pred ccccceeeEeCCCceecCceEEcCCcCeEECCC-------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCE
Q 039045 155 RISDVFAVDIHPAAKIGKGILFDHATGVVIGET-------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGAT 227 (295)
Q Consensus 155 ~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~-------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~ 227 (295)
.+.+..++.|+++++||+++.|+| +++||+. ++||++|.|+.++++.+ +++||++++||++++
T Consensus 55 ~I~~g~~i~I~~~~~IGd~~~I~h--~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~--------~v~IG~~~~Igags~ 124 (146)
T PRK10191 55 TIHHGYAVVINKNVVAGDDFTIRH--GVTIGNRGADNMACPHIGNGVELGANVIILG--------DITIGNNVTVGAGSV 124 (146)
T ss_pred EECCCCeEEECCCcEECCCCEECC--CCEECCCCcCCCCCCEECCCcEEcCCCEEeC--------CCEECCCCEECCCCE
Confidence 344445788888888888888888 7888754 57888888888888874 688888888888888
Q ss_pred ECCCCEECCCCEECCCCE
Q 039045 228 ILGNVKIGEGAKVGAGSV 245 (295)
Q Consensus 228 I~~~v~IG~~~~Igagsv 245 (295)
|.+++. ....++|..+.
T Consensus 125 V~~dv~-~~~~v~G~pA~ 141 (146)
T PRK10191 125 VLDSVP-DNALVVGEKAR 141 (146)
T ss_pred ECCccC-CCcEEEccCcE
Confidence 877632 33334444443
No 109
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=4.8e-09 Score=102.70 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=49.1
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
+.|++++.||+++.|++ +++|+++++||++|.|+.+++|+ +++||++|.|+++++| .++.||++|.||
T Consensus 263 ~~i~~~v~ig~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~---------~~~Ig~~~~I~~~~~i-~~~~i~~~~~ig 330 (459)
T PRK14355 263 TYIDRGVVIGRDTTIYP--GVCISGDTRIGEGCTIEQGVVIK---------GCRIGDDVTVKAGSVL-EDSVVGDDVAIG 330 (459)
T ss_pred eEECCCeEEcCCCEEeC--CcEEeCCCEECCCCEECCCCEEe---------CCEEcCCCEECCCeEE-eCCEECCCCEEC
Confidence 45777777888888877 77777778888888887777775 3566666666666655 344555555554
Q ss_pred CCCEEc
Q 039045 242 AGSVVL 247 (295)
Q Consensus 242 agsvV~ 247 (295)
+++.|.
T Consensus 331 ~~~~i~ 336 (459)
T PRK14355 331 PMAHLR 336 (459)
T ss_pred CCCEEC
Confidence 444444
No 110
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=4.5e-09 Score=102.38 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=55.4
Q ss_pred CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCC-CCCcEEEccCcEEecCCCCCCCCCCCCCccc
Q 039045 213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDV-PARATAVGNPARLVGGKEKTSSNEECPGESM 281 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~V-p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~ 281 (295)
++.||++|.||+++.+.. +++||++|+||++++|..++ -....++|..+.+.+..+....+.+.|+...
T Consensus 365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~ 441 (450)
T PRK14360 365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVI 441 (450)
T ss_pred CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceee
Confidence 467899999999988743 79999999999999999885 3556777888999988877776677676543
No 111
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.97 E-value=5.3e-09 Score=77.14 Aligned_cols=72 Identities=29% Similarity=0.446 Sum_probs=41.9
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag 243 (295)
|++++.|++++.|. +.+|++++.|++++.|. ++.|+ +++.||++++|. +++|+++++||+++.|+++
T Consensus 2 ig~~~~I~~~~~i~---~s~ig~~~~ig~~~~i~-~s~i~--------~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 68 (79)
T cd05787 2 IGRGTSIGEGTTIK---NSVIGRNCKIGKNVVID-NSYIW--------DDVTIEDGCTIH-HSIVADGAVIGKGCTIPPG 68 (79)
T ss_pred ccCCCEECCCCEEe---ccEECCCCEECCCCEEe-CcEEe--------CCCEECCCCEEe-CcEEcCCCEECCCCEECCC
Confidence 56777777777775 35666666666666654 34443 245555555554 5555555555555555555
Q ss_pred CEEcC
Q 039045 244 SVVLI 248 (295)
Q Consensus 244 svV~~ 248 (295)
++|.+
T Consensus 69 ~~v~~ 73 (79)
T cd05787 69 SLISF 73 (79)
T ss_pred CEEeC
Confidence 55543
No 112
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.96 E-value=4.1e-09 Score=89.54 Aligned_cols=109 Identities=28% Similarity=0.386 Sum_probs=77.1
Q ss_pred eecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045 169 KIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSV 245 (295)
Q Consensus 169 ~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igagsv 245 (295)
.||+++.|.+ +++|..+ ..||+++.|-+|+.|..... ..++||++|+||.+|.|-+ |+||++|.||.||+
T Consensus 31 ~Ig~~vsIw~--~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~----~p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmgA~ 103 (176)
T COG0663 31 RIGAGVSIWP--GAVLRGDVEPIRIGARTNIQDGVVIHADPG----YPVTIGDDVTIGHGAVVHG-CTIGDNVLIGMGAT 103 (176)
T ss_pred EECCCCEECC--ceEEEccCCceEECCCceecCCeEEecCCC----CCeEECCCcEEcCccEEEE-eEECCCcEEecCce
Confidence 4555555655 5555544 36788888888888875422 4689999999999999965 99999999999999
Q ss_pred EcCC-CCCCcEEEccCcEEecC--CCCCCCCCCCCCcccccc
Q 039045 246 VLID-VPARATAVGNPARLVGG--KEKTSSNEECPGESMDHT 284 (295)
Q Consensus 246 V~~~-Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~~~ 284 (295)
|+.+ +-....++|.-|.+-.. .+......+.|++.+.+.
T Consensus 104 vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l 145 (176)
T COG0663 104 VLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPL 145 (176)
T ss_pred EeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecC
Confidence 9996 23334455666666553 334445567888766554
No 113
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=9.1e-09 Score=101.43 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=54.1
Q ss_pred CCEECCCCEECCCCEEC-------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCC-CCCCCccccc
Q 039045 213 HPKIGDGVLIGAGATIL-------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSN-EECPGESMDH 283 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~-------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~-~~~p~~~~~~ 283 (295)
+++||++|.||+++++. .+++||++|+||.+++|..++. ....++|.-+.+.+..+..... .+.|++.+.+
T Consensus 374 ~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~ 453 (482)
T PRK14352 374 DADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEG 453 (482)
T ss_pred ccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEeccccccccc
Confidence 46888899999998886 3589999999999999998854 4556778888888776655532 3678776654
No 114
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.93 E-value=5.8e-09 Score=101.39 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=44.7
Q ss_pred CEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045 214 PKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES 280 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~ 280 (295)
+.||++|.||+++++.. +++||++|+||.+++|..++. ....++|.-+.+.+..+......+.|+..
T Consensus 366 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~ 440 (451)
T TIGR01173 366 AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQR 440 (451)
T ss_pred eEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCcee
Confidence 56666677777766643 578888888888888887753 44455666777777766555445555543
No 115
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.92 E-value=9.7e-09 Score=85.93 Aligned_cols=107 Identities=22% Similarity=0.321 Sum_probs=64.5
Q ss_pred ceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 168 AKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244 (295)
Q Consensus 168 a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags 244 (295)
+.||+++.|.+ +++|... ++||++|.|+++++|.+... .+++||++++|+.++++. +++||++++|++++
T Consensus 18 v~ig~~~~I~~--~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~----~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~ 90 (153)
T cd04645 18 VTLGEGSSVWF--GAVLRGDVNPIRIGERTNIQDGSVLHVDPG----YPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGA 90 (153)
T ss_pred EEECCCcEEcC--CeEEECCCCceEECCCCEECCCcEEecCCC----CCeEEcCCcEECCCcEEe-eeEECCCCEECCCC
Confidence 34444444444 3444332 36777777777777753211 347999999999999985 58999999999999
Q ss_pred EEcCC--CCCCcEEEccCcEEecC--CCCCCCCCCCCCcccc
Q 039045 245 VVLID--VPARATAVGNPARLVGG--KEKTSSNEECPGESMD 282 (295)
Q Consensus 245 vV~~~--Vp~~~~v~G~PA~~i~~--~~~~~~~~~~p~~~~~ 282 (295)
.|..+ +.+++ ++|..+.+... ......+.+.|+...+
T Consensus 91 ~v~~~~~ig~~~-~ig~~~~v~~~~~i~~~~~~~g~~~~~~~ 131 (153)
T cd04645 91 IILDGAVIGKGS-IVAAGSLVPPGKVIPPGSLVAGSPAKVVR 131 (153)
T ss_pred EEcCCCEECCCC-EECCCCEECCCCEeCCCCEEeCCcchhcc
Confidence 99866 34443 34444444332 1122233355655443
No 116
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.91 E-value=1e-08 Score=88.85 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=43.9
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC-----CCCCC---CCCCEECCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT-----GKASG---DRHPKIGDGVLIGAGATILGNV 232 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~-----~~~~~---~~~~~IG~~v~IGa~a~I~~~v 232 (295)
.+.+++.++||++++|.+ ++.|+++++||+||.|++++.|++. ..... -.++.||+++.|++++.|..++
T Consensus 9 ~~~~~~~v~ig~~~~I~~--~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~ 86 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDP--GVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86 (193)
T ss_pred eEEEcCCeEECCCcEECC--CCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence 445566666666666655 4555555555555555555555431 00000 0134555666666666665556
Q ss_pred EECCCCEECCCCEE
Q 039045 233 KIGEGAKVGAGSVV 246 (295)
Q Consensus 233 ~IG~~~~IgagsvV 246 (295)
.||+++.|+.++.+
T Consensus 87 ~Ig~~~~Ig~~~~i 100 (193)
T cd03353 87 VLGEGVHIGNFVEI 100 (193)
T ss_pred EECCCCEECCcEEE
Confidence 66666665555444
No 117
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.91 E-value=1.1e-08 Score=86.34 Aligned_cols=84 Identities=26% Similarity=0.346 Sum_probs=42.2
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNVKIGEGA 238 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v~IG~~~ 238 (295)
+.||+++.|+++++|.+ .++||++|.|++++.|..++.|+....... -.++.|++++.|+.++.+ +++.||+++
T Consensus 18 v~ig~~~~I~~~a~i~~--~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i-~~siIg~~~ 94 (163)
T cd05636 18 VWIGEGAIVRSGAYIEG--PVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV-GDSVLGENV 94 (163)
T ss_pred eEEcCCCEECCCCEEeC--CeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE-ecCEECCCC
Confidence 44555555555555443 444444444444444433333332211110 023455666666666555 456777777
Q ss_pred EECCCCEEcC
Q 039045 239 KVGAGSVVLI 248 (295)
Q Consensus 239 ~IgagsvV~~ 248 (295)
.|++++++..
T Consensus 95 ~I~~~~~i~~ 104 (163)
T cd05636 95 NLGAGTITAN 104 (163)
T ss_pred EECCCcEEcc
Confidence 7777777654
No 118
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.90 E-value=1.1e-08 Score=80.63 Aligned_cols=102 Identities=22% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCceecCceEEcCCcCeEEC--CCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045 166 PAAKIGKGILFDHATGVVIG--ETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243 (295)
Q Consensus 166 ~~a~IG~~v~I~~~~~v~IG--~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag 243 (295)
++..||++++|++ +++|. +.++||++|.|+++++|...... ....+. ..+.++++||++|+||++
T Consensus 2 ~~i~iG~~~~I~~--~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~-----~~~~~~------~~~~~~v~Ig~~~~ig~~ 68 (107)
T cd05825 2 WNLTIGDNSWIGE--GVWIYNLAPVTIGSDACISQGAYLCTGSHD-----YRSPAF------PLITAPIVIGDGAWVAAE 68 (107)
T ss_pred ceEEECCCCEECC--CCEEeeCCceEECCCCEECCCeEeecCCCC-----CCcCcc------ceecCCEEECCCCEECCC
Confidence 4677888888877 55553 45778888888888887642211 111111 122344445555555555
Q ss_pred CEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcc
Q 039045 244 SVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGES 280 (295)
Q Consensus 244 svV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~ 280 (295)
++|.+++- ....++|.-+.+.+..+....+.+.|++.
T Consensus 69 ~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~ 106 (107)
T cd05825 69 AFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVP 106 (107)
T ss_pred CEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence 55544421 22233444555555555555566788764
No 119
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.89 E-value=8.3e-09 Score=100.53 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred CCEECCCCEECCCCEEC-------CCCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCccccc
Q 039045 213 HPKIGDGVLIGAGATIL-------GNVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDH 283 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~-------~~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~ 283 (295)
+++||++|.||+++++. .+++||++++||++++|.+++. ....++|.-+.+.+..+....+.+.|.....-
T Consensus 358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~ 436 (448)
T PRK14357 358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKE 436 (448)
T ss_pred CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEecc
Confidence 35677777777777653 3688999999999999988764 44456677788887777666666777765443
No 120
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.88 E-value=4.7e-09 Score=92.69 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=14.7
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL 202 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I 202 (295)
|.|+|+||+++.|++ -++||++++||++|.|+++|+|
T Consensus 12 Ie~gA~ig~~V~IGp--f~iIg~~V~ig~~t~l~shvvv 48 (260)
T COG1043 12 IEPGAEIGEDVKIGP--FCIIGPNVEIGDGTVLKSHVVV 48 (260)
T ss_pred eCCCCCcCCCCEECc--eEEECCCcEECCCcEEcccEEE
Confidence 333344444444433 3333333344444444333333
No 121
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=1.6e-08 Score=85.59 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred CCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCCCCC----CCCCEECCCCEECCCCEE-----CCCCE
Q 039045 166 PAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGKASG----DRHPKIGDGVLIGAGATI-----LGNVK 233 (295)
Q Consensus 166 ~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~~~~----~~~~~IG~~v~IGa~a~I-----~~~v~ 233 (295)
++..||++++|++ +++|..+ +.||++|.|+++++|.+...... ...++||++++|+.++++ ..++.
T Consensus 20 ~~I~ig~~~~I~~--~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~ 97 (161)
T cd03359 20 QNIVLNGKTIIQS--DVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVH 97 (161)
T ss_pred CCEEECCceEEcC--CCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcE
Confidence 3777888888888 5566654 68999999999999986532221 135689999999999875 44555
Q ss_pred ECCCCEECCCCEEcCC
Q 039045 234 IGEGAKVGAGSVVLID 249 (295)
Q Consensus 234 IG~~~~IgagsvV~~~ 249 (295)
||++++|+.+++|..+
T Consensus 98 Ig~~~~Ig~~~~I~~~ 113 (161)
T cd03359 98 IGKNCVIGRRCIIKDC 113 (161)
T ss_pred ECCCCEEcCCCEECCC
Confidence 5555555555555544
No 122
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=1.4e-08 Score=99.27 Aligned_cols=70 Identities=21% Similarity=0.393 Sum_probs=49.8
Q ss_pred CCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCC-CCCCCcccc
Q 039045 213 HPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSN-EECPGESMD 282 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~-~~~p~~~~~ 282 (295)
++.||++|.||+++++.. +++||++|+||.+++|.+.+. ....++|.-+.+.+..+....+ .+.|++...
T Consensus 369 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~~ 447 (456)
T PRK09451 369 DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQ 447 (456)
T ss_pred ccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceecc
Confidence 457888888888887642 488999999999999998853 4455667777777776655543 345666543
No 123
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.88 E-value=1.3e-09 Score=88.78 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=48.6
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC--CCCCcEEEccCcEEecCCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID--VPARATAVGNPARLVGGKE 268 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~--Vp~~~~v~G~PA~~i~~~~ 268 (295)
...||..|.+|.|++|+.++++-|.|+|-.++|+.++ ||+++++.|+|+.+.+..+
T Consensus 101 AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P 158 (184)
T KOG3121|consen 101 AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEP 158 (184)
T ss_pred hhhheeeeEeccceeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCc
Confidence 3577888888888888888888888888899988887 8999999999999999654
No 124
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.87 E-value=2.6e-08 Score=97.25 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=52.7
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCC-----CCCC--CCCCCEECCCCEECCCCEECCCCE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT-----GKAS--GDRHPKIGDGVLIGAGATILGNVK 233 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~-----~~~~--~~~~~~IG~~v~IGa~a~I~~~v~ 233 (295)
.+.|++++.||+++.|.+ +++|+.++.||++|.|+++++|.+. .... .-.++.||++|.||+++.|.+++.
T Consensus 259 ~~~i~~~~~ig~~~~i~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~ 336 (458)
T PRK14354 259 STYIDADVEIGSDTVIEP--GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSV 336 (458)
T ss_pred eEEECCCcEECCCCEEeC--CeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCE
Confidence 456777777777777766 5555555555555555555544321 1100 012467788888888888877788
Q ss_pred ECCCCEECCCCEEc
Q 039045 234 IGEGAKVGAGSVVL 247 (295)
Q Consensus 234 IG~~~~IgagsvV~ 247 (295)
||++|.|++++.|.
T Consensus 337 Ig~~~~i~~~~~i~ 350 (458)
T PRK14354 337 IGEEVKIGNFVEIK 350 (458)
T ss_pred EeCCcEECCceEEe
Confidence 88888887776664
No 125
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.87 E-value=8e-09 Score=95.05 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCEECCCCEECCCCEECCC----CEECCCCEECCCCEEcCCCCCCcEEEccCcEEec
Q 039045 213 HPKIGDGVLIGAGATILGN----VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVG 265 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~----v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~ 265 (295)
++.||++|.| ++++.++ |.||++|+||+||.|.-.+.++++ +|.-+.+..
T Consensus 230 ds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA~IGI~IGd~~i-IGAGavVta 283 (341)
T TIGR03536 230 GSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANAGIGIPLGDRCT-VEAGLYITA 283 (341)
T ss_pred CCEECCCCEE--eEEEeCCCceeEEECCCcEECCCCEEeeEECCCCE-ECCCCEEeC
Confidence 4555555555 4455577 999999999999999433444443 344444443
No 126
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.87 E-value=1.9e-08 Score=73.37 Aligned_cols=68 Identities=32% Similarity=0.401 Sum_probs=57.4
Q ss_pred EeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccC--------CEECCCCCCCCCCCCEECCCCEECCCCEECCCCEE
Q 039045 163 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHH--------VTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234 (295)
Q Consensus 163 ~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~g--------v~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~I 234 (295)
.|++++.|+++++|.+ .++||+++.|++++.|... ++|+ ++++||.++.|..+++|..++.|
T Consensus 2 ~ig~~~~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig--------~~~~v~~~~~i~~~~~ig~~~~i 71 (78)
T cd00208 2 FIGEGVKIHPKAVIRG--PVVIGDNVNIGPGAVIGAATGPNEKNPTIIG--------DNVEIGANAVIHGGVKIGDNAVI 71 (78)
T ss_pred EECCCeEECCCCEEeC--cEEECCCCEECCCCEEEeccCCCccCCcEEC--------CCcEECCCCEEeCCCEECCCCEE
Confidence 4788888888888876 7889999999999888865 7777 37889998999888999999999
Q ss_pred CCCCEE
Q 039045 235 GEGAKV 240 (295)
Q Consensus 235 G~~~~I 240 (295)
+++++|
T Consensus 72 ~~~s~v 77 (78)
T cd00208 72 GAGAVV 77 (78)
T ss_pred CcCcEe
Confidence 988876
No 127
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=2.6e-08 Score=77.92 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=48.2
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCC-CCCCCEECCCCEECCCCEECCCCEECCCCE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKAS-GDRHPKIGDGVLIGAGATILGNVKIGEGAK 239 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~-~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~ 239 (295)
.+.|++++.|++++.|.. .+.||+++.||+++.|.++++||...... ...++.|++++.|+.++.| +++.||+++.
T Consensus 11 ~v~ig~~~~I~~~~~i~g--~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~l-g~siIg~~v~ 87 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEG--PVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFL-GHSYLGSWCN 87 (101)
T ss_pred CEEECCCCEECCCCEEeC--CCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEE-eeeEECCCCE
Confidence 366777777777777654 56666666666666555555555322111 0124555555555555555 4667777777
Q ss_pred ECCCCEE
Q 039045 240 VGAGSVV 246 (295)
Q Consensus 240 IgagsvV 246 (295)
||+++..
T Consensus 88 ig~~~~~ 94 (101)
T cd05635 88 LGAGTNN 94 (101)
T ss_pred ECCCcee
Confidence 7776544
No 128
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.85 E-value=1.2e-08 Score=99.57 Aligned_cols=86 Identities=24% Similarity=0.231 Sum_probs=46.1
Q ss_pred ceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECC-----CCCCC---CCCCCEECCCCEECCCCEECC
Q 039045 159 VFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-----TGKAS---GDRHPKIGDGVLIGAGATILG 230 (295)
Q Consensus 159 ~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg-----~~~~~---~~~~~~IG~~v~IGa~a~I~~ 230 (295)
..++.|++++.|++++.|.. +++|+++++||++|.|++++.|.+ +.... .-.+++||++|.||++++|.+
T Consensus 261 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~ 338 (456)
T PRK14356 261 PESVRIGPRATIEPGAEIYG--PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP 338 (456)
T ss_pred CCcEEECCCcEECCCCEEeC--CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECC
Confidence 34566777777777777765 344444444444444444433321 11100 012456666666666666666
Q ss_pred CCEECCCCEECCCCEE
Q 039045 231 NVKIGEGAKVGAGSVV 246 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV 246 (295)
+++||++|.||.++.+
T Consensus 339 ~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 339 GAVLEEGARVGNFVEM 354 (456)
T ss_pred CCEECCCCEecCCcee
Confidence 6666666666665544
No 129
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.85 E-value=7.1e-08 Score=93.37 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=53.5
Q ss_pred CCCEECCCCEECCCCEECC-------CCEECCCCEECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCC-CCCCcccc
Q 039045 212 RHPKIGDGVLIGAGATILG-------NVKIGEGAKVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNE-ECPGESMD 282 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~-------~v~IG~~~~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~-~~p~~~~~ 282 (295)
.+++||++|.||+++++.. +++||++|+||+++.|...+- ...+++|.-+.+.+..+....+. ..|+..++
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~ 420 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIK 420 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehh
Confidence 4578999999999988864 489999999999999998753 44567777888888776555433 35555544
Q ss_pred c
Q 039045 283 H 283 (295)
Q Consensus 283 ~ 283 (295)
+
T Consensus 421 ~ 421 (430)
T PRK14359 421 N 421 (430)
T ss_pred h
Confidence 3
No 130
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.81 E-value=3.2e-08 Score=73.84 Aligned_cols=51 Identities=35% Similarity=0.437 Sum_probs=29.4
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~ 248 (295)
+.||++|.|+++++|. +..|++++.|+.++.| .++.|++++.|++++.+..
T Consensus 17 ~~Ig~~~~I~~~~~i~---------~s~i~~~~~ig~~~~l-~~svi~~~~~i~~~~~v~~ 67 (81)
T cd04652 17 SVIGANCKIGKRVKIT---------NCVIMDNVTIEDGCTL-ENCIIGNGAVIGEKCKLKD 67 (81)
T ss_pred cEECCCCEECCCCEEe---------CcEEeCCCEECCCCEE-eccEEeCCCEECCCCEEcc
Confidence 4444555555555553 3456666666666665 5566666666666666643
No 131
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.80 E-value=2.9e-08 Score=85.51 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=82.2
Q ss_pred eeeEeC-CCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCC-CEECCCCEECCC
Q 039045 160 FAVDIH-PAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAG-ATILGNVKIGEG 237 (295)
Q Consensus 160 ~~v~Ig-~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~-a~I~~~v~IG~~ 237 (295)
+.+..+ ....+|+.+.+..+..+..+.+.+||+++.++++++|...+. .++...--.+ ....++++||++
T Consensus 59 ~~~~~~~~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h--------~~~~~~~~~~~~~~~~~v~IG~~ 130 (190)
T COG0110 59 VRIDLGEKNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSH--------PGDFVTANIGALVGAGPVTIGED 130 (190)
T ss_pred EEEecCCcceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCC--------CCChhhcccCCceecCCeEECCC
Confidence 344445 677777777777766666677777788877777777764311 1111111111 444567999999
Q ss_pred CEECCCCEEcCCC-CCCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 238 AKVGAGSVVLIDV-PARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 238 ~~IgagsvV~~~V-p~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
|+||++++|+++| .....++|..+.+.+..+......++|++..+..
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~ 178 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKR 178 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEec
Confidence 9999999999995 4777888999999998877777789999865443
No 132
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.80 E-value=3e-08 Score=90.86 Aligned_cols=99 Identities=25% Similarity=0.383 Sum_probs=66.6
Q ss_pred eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCc-EEccCCEECCCCCCCCCCCCEECCCCEECCCCEECC----C---
Q 039045 160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNV-SILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILG----N--- 231 (295)
Q Consensus 160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v-~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~----~--- 231 (295)
.++.|.++.++--|++|.. |++|.+.++|..|+ +|+.+ .|. +.. +++++||++|.|++++.|++ +
T Consensus 152 ~gVRI~~~~rVRlGAyLGe--GtvVm~~a~VN~nAgtIG~~-iI~--g~I--~HdvvIGd~~~IgpGvsI~G~LsGg~~~ 224 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAE--GTTVMHEGFVNFNAGTLGAS-MVE--GRI--SAGVVVGDGSDIGGGASIMGTLSGGGKE 224 (319)
T ss_pred CccEECCCceeeeccEECC--CCEEcCCCEEccCceEecCc-eEE--EEE--ccCCEECCCCEECCCceecceecCCCcc
Confidence 3666666666666666655 56666666666666 45554 332 111 25799999999999999554 8
Q ss_pred -CEECCCCEECCCCEEcCCCCCCcEEEccCcEEecC
Q 039045 232 -VKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGG 266 (295)
Q Consensus 232 -v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~ 266 (295)
|+||++|+||+||.|.-.+.+++ ++|.-+.+++.
T Consensus 225 pV~IGe~~~IGagA~IGI~IGd~~-VVGAGaVVtkg 259 (319)
T TIGR03535 225 VISIGERCLLGANSGLGISLGDDC-VVEAGLYVTAG 259 (319)
T ss_pred cEEECCCcEECCCCEECeEECCCC-EECCCCEEeCC
Confidence 99999999999999944444544 44555555554
No 133
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.3e-08 Score=100.35 Aligned_cols=78 Identities=38% Similarity=0.529 Sum_probs=35.3
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGE 236 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~ 236 (295)
+.||.++.||.|+.|. +.+||.+|.||.||.| +++|+||++..+ +++.|+++|.|+.||++.+|++||.
T Consensus 334 ~~ig~gT~Ig~g~~I~---NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I---~~aii~d~v~i~~~~~l~~g~vl~~ 407 (673)
T KOG1461|consen 334 VVIGAGTKIGSGSKIS---NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRI---DHAIICDDVKIGEGAILKPGSVLGF 407 (673)
T ss_pred EEecccccccCCCeee---cceecCCCEecCceEEeeeeeecCcEECCCceE---eeeEeecCcEeCCCcccCCCcEEee
Confidence 3444444444444444 4556666666665543 344444433222 2334444444444444444444444
Q ss_pred CCEECCCCE
Q 039045 237 GAKVGAGSV 245 (295)
Q Consensus 237 ~~~Igagsv 245 (295)
++++|.+-+
T Consensus 408 ~VVv~~~~~ 416 (673)
T KOG1461|consen 408 GVVVGRNFV 416 (673)
T ss_pred eeEeCCCcc
Confidence 444433333
No 134
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.77 E-value=6.4e-08 Score=75.71 Aligned_cols=72 Identities=22% Similarity=0.214 Sum_probs=51.6
Q ss_pred CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEEC---CCCEECCCCEECCCCEECCC
Q 039045 167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG---AGATILGNVKIGEGAKVGAG 243 (295)
Q Consensus 167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IG---a~a~I~~~v~IG~~~~Igag 243 (295)
.++|++++.|.+ ++.|+..+.||+++.|+++++|++ ++.||++|.|| .+++|.++++|++++.++ +
T Consensus 11 ~v~ig~~~~I~~--~~~i~g~v~IG~~~~Ig~~~~I~~--------~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg-~ 79 (101)
T cd05635 11 PIYIGKDAVIEP--FAVIEGPVYIGPGSRVKMGARIYG--------NTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLG-H 79 (101)
T ss_pred CEEECCCCEECC--CCEEeCCCEECCCCEECCCCEEeC--------cCEECCCCEECCEECccEEcCCCEecCcCEEe-e
Confidence 467888888877 677777788888888888888874 67888888887 566666666666666554 5
Q ss_pred CEEcCC
Q 039045 244 SVVLID 249 (295)
Q Consensus 244 svV~~~ 249 (295)
++|..+
T Consensus 80 siIg~~ 85 (101)
T cd05635 80 SYLGSW 85 (101)
T ss_pred eEECCC
Confidence 555544
No 135
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.77 E-value=5.6e-08 Score=72.37 Aligned_cols=29 Identities=48% Similarity=0.724 Sum_probs=12.4
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCc
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNV 194 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v 194 (295)
|++++.|++++.|.+ +++||++|.||+++
T Consensus 2 i~~~~~I~~~~~i~~--~~~Ig~~~~Ig~~~ 30 (80)
T cd05824 2 IDPSAKIGKTAKIGP--NVVIGPNVTIGDGV 30 (80)
T ss_pred cCCCCEECCCCEECC--CCEECCCCEECCCc
Confidence 344555555444433 33333333333333
No 136
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.77 E-value=4.2e-08 Score=73.06 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=13.7
Q ss_pred CEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 214 PKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
+.+++++.|++++.+..+..||+++.|+
T Consensus 52 sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 52 SIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred CEEeCCCEECCCcEEecCEEECCceEEC
Confidence 4555555555555554444444444443
No 137
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.76 E-value=6e-08 Score=71.71 Aligned_cols=66 Identities=33% Similarity=0.473 Sum_probs=32.7
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag 243 (295)
|++++.|++++.|. + ++||++|.|+++++|. ++.|++++.|++++.| .++.|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~--------~-s~ig~~~~Ig~~~~i~---------~svi~~~~~i~~~~~i-~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIK--------N-SVIGDNVRIGDGVTIT---------NSILMDNVTIGANSVI-VDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEe--------C-CEECCCCEECCCCEEe---------CCEEeCCCEECCCCEE-ECCEECCCCEECCC
Confidence 44555555544443 2 3444444444444443 3455555555555555 24455555555555
Q ss_pred CEEcC
Q 039045 244 SVVLI 248 (295)
Q Consensus 244 svV~~ 248 (295)
+.+..
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 55543
No 138
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.75 E-value=1.8e-08 Score=90.43 Aligned_cols=86 Identities=28% Similarity=0.395 Sum_probs=60.0
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCC------cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEEC-----
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGET------AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATIL----- 229 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~------~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~----- 229 (295)
++.|.|+++|-.+++|.. ++++... +.++.+++|-..+++|+ ..+||+||.||.|+.|+
T Consensus 108 g~RI~p~a~VR~ga~i~~--gtvvM~~sfVNigA~~~~gtMVd~~as~G~--------~a~VGkn~higgGa~I~GVLep 177 (271)
T COG2171 108 GVRIVPGAIVRLGAYIAK--GTVVMPESFVNIGAGTGEGTMVDGRASVGS--------CAQVGKNSHIGGGASIGGVLEP 177 (271)
T ss_pred ceeecCccEEeeccEECC--CcEEcccceEEECcccCcceEEeeeeeeec--------cEEECCCcccCCcceEeEEecC
Confidence 344555555444444444 3333332 45666667766777764 58999999999999997
Q ss_pred ---CCCEECCCCEECCCCEEcCCCC--CCcEE
Q 039045 230 ---GNVKIGEGAKVGAGSVVLIDVP--ARATA 256 (295)
Q Consensus 230 ---~~v~IG~~~~IgagsvV~~~Vp--~~~~v 256 (295)
.++.||+||.|||+|++..+|+ +++++
T Consensus 178 ~~a~Pv~IgdncliGAns~~veGV~vGdg~VV 209 (271)
T COG2171 178 LQANPVIIGDNCLIGANSEVVEGVIVGDGCVV 209 (271)
T ss_pred CCCCCeEECCccEeccccceEeeeEeCCCcEE
Confidence 4799999999999998888864 55554
No 139
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.75 E-value=9.4e-08 Score=70.36 Aligned_cols=64 Identities=34% Similarity=0.561 Sum_probs=28.2
Q ss_pred ecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 170 IGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246 (295)
Q Consensus 170 IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV 246 (295)
||++++|+. ++.|. ++.|+++|.|+++++|. ++.|++++.|++++.|. ++.|++++.|+.++.+
T Consensus 2 ig~~~~I~~--~~~i~-~s~ig~~~~ig~~~~i~---------~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 65 (79)
T cd05787 2 IGRGTSIGE--GTTIK-NSVIGRNCKIGKNVVID---------NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTI 65 (79)
T ss_pred ccCCCEECC--CCEEe-ccEECCCCEECCCCEEe---------CcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEE
Confidence 344444444 33333 24444444444444442 23444444444444442 4444444444444444
No 140
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.73 E-value=8.9e-08 Score=71.44 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=19.1
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAG 243 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~Igag 243 (295)
++.|++++.|++++.+ .++.||+++.|+++
T Consensus 50 ~svi~~~~~i~~~~~v-~~~ii~~~~~i~~~ 79 (81)
T cd04652 50 NCIIGNGAVIGEKCKL-KDCLVGSGYRVEAG 79 (81)
T ss_pred ccEEeCCCEECCCCEE-ccCEECCCcEeCCC
Confidence 4566777777777666 45666666666555
No 141
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.71 E-value=1.3e-07 Score=69.83 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=41.7
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCc-----EEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETA-----VIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~-----~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
++.|++++.|++ +.|++ ++.||+++ +|++++.|++++.|. ++.|++++.|++++.+..++.||
T Consensus 5 ~~~I~~~~~i~~-s~ig~--~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------~svv~~~~~i~~~~~i~~~~~ig 72 (79)
T cd03356 5 STVIGENAIIKN-SVIGD--NVRIGDGVTITNSILMDNVTIGANSVIV---------DSIIGDNAVIGENVRVVNLCIIG 72 (79)
T ss_pred CcEECCCCEEeC-CEECC--CCEECCCCEEeCCEEeCCCEECCCCEEE---------CCEECCCCEECCCCEEcCCeEEC
Confidence 344555555544 44544 44444444 445555555555553 46788888888888777667777
Q ss_pred CCCEEC
Q 039045 236 EGAKVG 241 (295)
Q Consensus 236 ~~~~Ig 241 (295)
+++.|+
T Consensus 73 ~~~~i~ 78 (79)
T cd03356 73 DDVVVE 78 (79)
T ss_pred CCeEEC
Confidence 777765
No 142
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.70 E-value=1.6e-07 Score=73.31 Aligned_cols=80 Identities=30% Similarity=0.372 Sum_probs=52.8
Q ss_pred CceecCceEEcCCcCeEECC--CcEEcCCcEEccCCEECCCCCCCCCC-----CCEECCCCEECCCCEECCCCEECCCCE
Q 039045 167 AAKIGKGILFDHATGVVIGE--TAVIGNNVSILHHVTLGGTGKASGDR-----HPKIGDGVLIGAGATILGNVKIGEGAK 239 (295)
Q Consensus 167 ~a~IG~~v~I~~~~~v~IG~--~~~IG~~v~I~~gv~Igg~~~~~~~~-----~~~IG~~v~IGa~a~I~~~v~IG~~~~ 239 (295)
++.||++++|.+ ++.|.. ++.||++|.|++++.|.......... +..+..++.||.++.|..++.|++++.
T Consensus 1 ~v~Ig~~~~I~~--~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ 78 (109)
T cd04647 1 NISIGDNVYIGP--GCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT 78 (109)
T ss_pred CeEECCCcEECC--CCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCE
Confidence 367999999988 777777 89999999999999998652211111 123355556666666666666666666
Q ss_pred ECCCCEEcC
Q 039045 240 VGAGSVVLI 248 (295)
Q Consensus 240 IgagsvV~~ 248 (295)
|+.++++..
T Consensus 79 ig~~~~i~~ 87 (109)
T cd04647 79 IGDGAVVGA 87 (109)
T ss_pred ECCCCEECC
Confidence 666655543
No 143
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.70 E-value=8.8e-08 Score=75.16 Aligned_cols=53 Identities=23% Similarity=0.171 Sum_probs=43.3
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V 250 (295)
+.|+++|.|+.++.|. +..|++++.||.++.+ .++.||+++.|+++++|.++.
T Consensus 29 svi~~~~~Ig~~~~I~---------~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 29 SVLFRGVRVGSGSVVE---------DSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred CEEeCCCEECCCCEEE---------EeEEcCCCEECCCCEE-EeEEECCCCEECCCCEECCCc
Confidence 5566666666666664 5789999999999998 689999999999999999884
No 144
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.68 E-value=1.5e-07 Score=73.08 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=18.4
Q ss_pred ECCCCEECCCCE--ECCCCEECCCCEECCCCEEcCC
Q 039045 216 IGDGVLIGAGAT--ILGNVKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 216 IG~~v~IGa~a~--I~~~v~IG~~~~IgagsvV~~~ 249 (295)
|++++.|+.++. +.+++.||++|+|+.++.+...
T Consensus 37 i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~ 72 (101)
T cd03354 37 IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN 72 (101)
T ss_pred EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc
Confidence 333334443333 2455567777777777666654
No 145
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.67 E-value=7.8e-08 Score=94.93 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=27.2
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV 246 (295)
++.||+++.||+++.|..++.||++|.|++++.|
T Consensus 322 ~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 322 GAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 4688888888888888888888888888885554
No 146
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.58 E-value=6.4e-07 Score=74.63 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=68.3
Q ss_pred ceecCceEEcCCcCeEEC-CCcEEcCCcEEccCCEECCC-CCCCC--CC-CCEECCCCE----ECCCCEECCCCEECCCC
Q 039045 168 AKIGKGILFDHATGVVIG-ETAVIGNNVSILHHVTLGGT-GKASG--DR-HPKIGDGVL----IGAGATILGNVKIGEGA 238 (295)
Q Consensus 168 a~IG~~v~I~~~~~v~IG-~~~~IG~~v~I~~gv~Igg~-~~~~~--~~-~~~IG~~v~----IGa~a~I~~~v~IG~~~ 238 (295)
..||++++|+.+ ...++ ..+.||++|.|+++++|... ..... .. .-.++++.+ ......+..+++||++|
T Consensus 2 ~~iG~~s~i~~~-~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 80 (145)
T cd03349 2 ISVGDYSYGSGP-DCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV 80 (145)
T ss_pred EEEeCceeeCCC-CceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence 578999999764 33444 48999999999999999865 22110 00 111222211 11122233456666666
Q ss_pred EECCCCEEcCCCC-CCcEEEccCcEEecCCCCCCCCCCCCCcccccc
Q 039045 239 KVGAGSVVLIDVP-ARATAVGNPARLVGGKEKTSSNEECPGESMDHT 284 (295)
Q Consensus 239 ~IgagsvV~~~Vp-~~~~v~G~PA~~i~~~~~~~~~~~~p~~~~~~~ 284 (295)
+||++++|..++- ....++|.-+.+.+..+....+.+.|++.++..
T Consensus 81 ~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~ 127 (145)
T cd03349 81 WIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYR 127 (145)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhh
Confidence 6666666655532 333445555666666666666678898887654
No 147
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.51 E-value=5.3e-07 Score=85.28 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=6.8
Q ss_pred EeCCCceecCceEE
Q 039045 163 DIHPAAKIGKGILF 176 (295)
Q Consensus 163 ~Ig~~a~IG~~v~I 176 (295)
.+.+.+.||+++.|
T Consensus 250 ~i~~~~~i~~~~~i 263 (353)
T TIGR01208 250 KIRGRVVVGEGAKI 263 (353)
T ss_pred EEcCCEEECCCCEE
Confidence 34444455555555
No 148
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.50 E-value=4.1e-07 Score=87.94 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=54.0
Q ss_pred CCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 165 HPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGS 244 (295)
Q Consensus 165 g~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Igags 244 (295)
.+++.||++|.|. +++|. +++||++|.|+.+++|. ++.|+++|.||++|+| .++.|+++|+|++++
T Consensus 313 ~~~~~ig~~~~I~---~~~i~-~svIg~~~~I~~~~~i~---------~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~ 378 (407)
T PRK00844 313 AQDSLVSAGSIIS---GATVR-NSVLSPNVVVESGAEVE---------DSVLMDGVRIGRGAVV-RRAILDKNVVVPPGA 378 (407)
T ss_pred EEeCEEcCCCEEC---CeeeE-cCEECCCCEECCCCEEe---------eeEECCCCEECCCCEE-EeeEECCCCEECCCC
Confidence 3456667777764 35554 47788888888888875 4688999999999888 678889999999998
Q ss_pred EEcCC
Q 039045 245 VVLID 249 (295)
Q Consensus 245 vV~~~ 249 (295)
+|..+
T Consensus 379 ~i~~~ 383 (407)
T PRK00844 379 TIGVD 383 (407)
T ss_pred EECCC
Confidence 88775
No 149
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.49 E-value=1.2e-07 Score=59.28 Aligned_cols=33 Identities=45% Similarity=0.814 Sum_probs=24.9
Q ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~ 248 (295)
++||++|+||+++.| +++||++|.|++|++|++
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 589999999999998 699999999999999874
No 150
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.44 E-value=8.9e-07 Score=84.53 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=46.2
Q ss_pred eEeCCCceecCceEEcCCcCeEECC---CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGE---TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGA 238 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~---~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~ 238 (295)
+.|++++.|+ ++.|++ +++|+. +++||++|.|+++++|. +++|+++|.||+++.| .+++||++|
T Consensus 283 ~~i~~~~~i~-~~~Ig~--~~~I~~~v~~s~ig~~~~I~~~~~i~---------~svi~~~~~i~~~~~i-~~~ii~~~~ 349 (380)
T PRK05293 283 QYIAENAKVK-NSLVVE--GCVVYGTVEHSVLFQGVQVGEGSVVK---------DSVIMPGAKIGENVVI-ERAIIGENA 349 (380)
T ss_pred CEECCCCEEe-cCEECC--CCEEcceecceEEcCCCEECCCCEEE---------CCEEeCCCEECCCeEE-eEEEECCCC
Confidence 4455555542 334444 344332 34566666666666653 5688888888888877 557788888
Q ss_pred EECCCCEEcC
Q 039045 239 KVGAGSVVLI 248 (295)
Q Consensus 239 ~IgagsvV~~ 248 (295)
.|++++.+..
T Consensus 350 ~i~~~~~i~~ 359 (380)
T PRK05293 350 VIGDGVIIGG 359 (380)
T ss_pred EECCCCEEcC
Confidence 8888777754
No 151
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.40 E-value=1.2e-06 Score=82.94 Aligned_cols=51 Identities=33% Similarity=0.415 Sum_probs=34.2
Q ss_pred CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
+++||++|.|+++|+|. ++.|++++.||.++.| .+++||+++.|+++++|.
T Consensus 310 ~s~i~~~~~I~~~~~i~---------~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 310 HSVLGIRVRIGSGSTVE---------DSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred ccEECCCCEECCCCEEe---------eeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence 34444444444444442 5778888888888777 677888888888877764
No 152
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.38 E-value=1.2e-06 Score=85.54 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG 204 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg 204 (295)
..|+++|+|+ ++.|. +.+||++|.||++|.|.+++.+|.
T Consensus 316 s~I~~~~~I~-~~~I~---~svI~~~~~Ig~~~~I~~sii~g~ 354 (436)
T PLN02241 316 SIISHGCFLR-ECKIE---HSVVGLRSRIGEGVEIEDTVMMGA 354 (436)
T ss_pred eEEcCCcEEc-CeEEE---eeEEcCCCEECCCCEEEEeEEECC
Confidence 4577777777 77775 357888888888888777776663
No 153
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=7.4e-07 Score=84.91 Aligned_cols=101 Identities=24% Similarity=0.322 Sum_probs=70.3
Q ss_pred HHHHHHhcCChhHHHHHhhccccceeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCE
Q 039045 136 VAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPK 215 (295)
Q Consensus 136 ~a~~l~~~~~~~~~~~~~~~~~~~~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~ 215 (295)
.++..|++.+....+.-+..+..+..++|..++.||.++.|++ +++|..+++||++|.||+++.|- +++
T Consensus 237 ~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p--~v~l~G~t~ig~~v~iGpg~~i~---------ds~ 305 (460)
T COG1207 237 EAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEP--NVILEGNTVIGDNVVIGPGSVIK---------DSV 305 (460)
T ss_pred HHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEec--CcEEeeeEEECCceEECCCcEEE---------eeE
Confidence 3455666655555566677788888999999999999999999 88888888899999998887774 456
Q ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045 216 IGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248 (295)
Q Consensus 216 IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~ 248 (295)
||+|+.|-+.++| ++++||++|.||+-+.+.+
T Consensus 306 I~~~a~I~~~S~i-e~s~vg~~~~VGPfA~LRP 337 (460)
T COG1207 306 IGDNAVIKAYSVI-EGSTVGEGATVGPFARLRP 337 (460)
T ss_pred EcCCCEEEeccee-eccEecCCcccCCccccCC
Confidence 6666665554444 3444444444444444443
No 154
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.6e-06 Score=81.09 Aligned_cols=69 Identities=39% Similarity=0.570 Sum_probs=52.1
Q ss_pred eEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEEC
Q 039045 162 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVG 241 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~Ig 241 (295)
+.|-..+.||+++.|+. ++.|+++++||+||.|++++.|. +..|.++|.|+.++.| .++.||++|.||
T Consensus 256 ~~i~gp~~ig~~~~i~~--~~~i~~~~~ig~~~~I~~~~~i~---------~Sii~~~~~i~~~~~i-~~sIi~~~~~ig 323 (358)
T COG1208 256 AYIIGPVVIGPGAKIGP--GALIGPYTVIGEGVTIGNGVEIK---------NSIIMDNVVIGHGSYI-GDSIIGENCKIG 323 (358)
T ss_pred ceEeCCEEECCCCEECC--CCEECCCcEECCCCEECCCcEEE---------eeEEEcCCEECCCCEE-eeeEEcCCcEEC
Confidence 44566667777777766 67777777777777777777774 5788888888888888 677788888888
Q ss_pred C
Q 039045 242 A 242 (295)
Q Consensus 242 a 242 (295)
+
T Consensus 324 ~ 324 (358)
T COG1208 324 A 324 (358)
T ss_pred C
Confidence 7
No 155
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.31 E-value=2.3e-06 Score=80.94 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=19.7
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLG 203 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Ig 203 (295)
.+.|++++.| .+++|.. +++||++|.|+ ++.|+++++||
T Consensus 254 ~~~i~~~~~i-~~~~i~~--~~~Ig~~~~I~-~~~i~~~~~Ig 292 (353)
T TIGR01208 254 RVVVGEGAKI-VNSVIRG--PAVIGEDCIIE-NSYIGPYTSIG 292 (353)
T ss_pred CEEECCCCEE-eCCEEEC--CcEECCCCEEc-CcEECCCCEEC
Confidence 3556666666 4555544 45555555543 33344444443
No 156
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.28 E-value=2.6e-06 Score=81.02 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~ 248 (295)
++.|+++|.|++++.+ .++.||++++||+++.+..
T Consensus 321 ~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 321 NCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred eeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeCC
Confidence 4566677777776666 4566677777776666643
No 157
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.26 E-value=2.1e-06 Score=79.32 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=49.5
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC--CCCCEECCCCEECCCCEECCCCEECCCC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG--DRHPKIGDGVLIGAGATILGNVKIGEGA 238 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~--~~~~~IG~~v~IGa~a~I~~~v~IG~~~ 238 (295)
++-+.+.+.+|++|.|++ +++||.+++|+++|.|.+.+.+++..-..+ .+...+|-++.||-++.|-.+++||+++
T Consensus 264 nvlvd~~~~iG~~C~Ig~--~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 264 NVLVDSIASIGENCSIGP--NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred cEeeccccccCCccEECC--CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 456788888888888888 788888888888888877776664321111 1223444455555555444444444444
Q ss_pred EECC
Q 039045 239 KVGA 242 (295)
Q Consensus 239 ~Iga 242 (295)
+|..
T Consensus 342 ~V~d 345 (371)
T KOG1322|consen 342 IVAD 345 (371)
T ss_pred EEec
Confidence 4433
No 158
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.25 E-value=4.2e-07 Score=57.17 Aligned_cols=34 Identities=44% Similarity=0.692 Sum_probs=28.6
Q ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
++||++|+|++++.|.++++||++|+|+++++|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 6788888888999988999999999999888875
No 159
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.24 E-value=2.9e-06 Score=82.53 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=54.9
Q ss_pred CceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 167 AAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246 (295)
Q Consensus 167 ~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV 246 (295)
++.||++|.| . ++.|. +++|+++|.|+.++.|. ++.|+++|.||.+|.| .++.||++|.|+++++|
T Consensus 327 ~s~i~~~~~i-~--~~~i~-~svi~~~~~I~~~~~i~---------~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i 392 (425)
T PRK00725 327 NSLVSGGCII-S--GAVVR-RSVLFSRVRVNSFSNVE---------DSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVI 392 (425)
T ss_pred eCEEcCCcEE-c--Ccccc-CCEECCCCEECCCCEEe---------eeEEcCCCEECCCCEE-eeEEECCCCEECCCCEE
Confidence 5677777777 4 56665 57888888888888884 6789999999999888 67889999999998888
Q ss_pred cCC
Q 039045 247 LID 249 (295)
Q Consensus 247 ~~~ 249 (295)
..+
T Consensus 393 ~~~ 395 (425)
T PRK00725 393 GED 395 (425)
T ss_pred CCC
Confidence 755
No 160
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.22 E-value=1.8e-06 Score=70.71 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=57.8
Q ss_pred eeEeCCCceecCceEEcCC-cCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEEC-----------CCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHA-TGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIG-----------AGATI 228 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~-~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IG-----------a~a~I 228 (295)
++.+...+.+.+|++|... .++.+|.+|+++.++.|.+.-.+-..+..- -+..|||+|+|+ +.+.+
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~af--fp~hiGdhVFieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAF--FPVHIGDHVFIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCcee--eeeeecceEEEecceEeehhhheeeeEe
Confidence 5667777778888888642 578888888888888887644332221110 123445544444 44455
Q ss_pred CCCCEECCCCEECCCCEEcCC--CCCCcEE
Q 039045 229 LGNVKIGEGAKVGAGSVVLID--VPARATA 256 (295)
Q Consensus 229 ~~~v~IG~~~~IgagsvV~~~--Vp~~~~v 256 (295)
+.+++||.+|++-..++|..| +|+.+++
T Consensus 111 GknaviGrrCVlkdCc~ild~tVlPpet~v 140 (184)
T KOG3121|consen 111 GKNAVIGRRCVLKDCCRILDDTVLPPETLV 140 (184)
T ss_pred ccceeEcCceEhhhheeccCCcccCccccc
Confidence 566666666666666666666 5665543
No 161
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.19 E-value=7.2e-06 Score=64.27 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=12.3
Q ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 215 KIGDGVLIGAGATILGNVKIGEGAKVGAGSVV 246 (295)
Q Consensus 215 ~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV 246 (295)
.|+++|.|++++.| .++.|++++.||.++.+
T Consensus 30 vi~~~~~Ig~~~~I-~~siI~~~~~Ig~~~~i 60 (104)
T cd04651 30 VLFRGVRVGSGSVV-EDSVIMPNVGIGRNAVI 60 (104)
T ss_pred EEeCCCEECCCCEE-EEeEEcCCCEECCCCEE
Confidence 34444444444433 23334444444443333
No 162
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.17 E-value=5.2e-06 Score=81.02 Aligned_cols=67 Identities=27% Similarity=0.426 Sum_probs=46.0
Q ss_pred ceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECC---------------C---CEECCCCEEC
Q 039045 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGD---------------G---VLIGAGATIL 229 (295)
Q Consensus 168 a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~---------------~---v~IGa~a~I~ 229 (295)
+.|+++|.|. +++|+ +++|+++|.|+.+|+|..+ +.+|. + +.||.+|+|.
T Consensus 316 s~I~~~~~I~---~~~I~-~svI~~~~~Ig~~~~I~~s--------ii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 383 (436)
T PLN02241 316 SIISHGCFLR---ECKIE-HSVVGLRSRIGEGVEIEDT--------VMMGADYYETEEEIASLLAEGKVPIGIGENTKIR 383 (436)
T ss_pred eEEcCCcEEc---CeEEE-eeEEcCCCEECCCCEEEEe--------EEECCCccccccccccccccCCcceEECCCCEEc
Confidence 6788888885 56775 5899999999999999753 33331 2 2566666663
Q ss_pred CCCEECCCCEECCCCEEc
Q 039045 230 GNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 230 ~~v~IG~~~~IgagsvV~ 247 (295)
+++|+++|+||+++++.
T Consensus 384 -~~vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 384 -NAIIDKNARIGKNVVII 400 (436)
T ss_pred -ceEecCCCEECCCcEEe
Confidence 56666666666666665
No 163
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.12 E-value=9.4e-06 Score=66.98 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=68.2
Q ss_pred eEeCCCceecCceEEc-CCcCeEECCCcEEcCCcEEcc----CC---------EECCCCC---CCCCCCCEECCCCEECC
Q 039045 162 VDIHPAAKIGKGILFD-HATGVVIGETAVIGNNVSILH----HV---------TLGGTGK---ASGDRHPKIGDGVLIGA 224 (295)
Q Consensus 162 v~Ig~~a~IG~~v~I~-~~~~v~IG~~~~IG~~v~I~~----gv---------~Igg~~~---~~~~~~~~IG~~v~IGa 224 (295)
+.|++++.+.+.+.+. ....++||+++.|++..+|.+ |+ .||.... ......-++||+..|++
T Consensus 27 vti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVies 106 (190)
T KOG4042|consen 27 VTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIES 106 (190)
T ss_pred eEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEee
Confidence 4445555554444333 234678888887777766543 22 2222110 00112358999999999
Q ss_pred CCEECCCCEECCCCEECCCCEEcC--CCCCCcEEEccCc
Q 039045 225 GATILGNVKIGEGAKVGAGSVVLI--DVPARATAVGNPA 261 (295)
Q Consensus 225 ~a~I~~~v~IG~~~~IgagsvV~~--~Vp~~~~v~G~PA 261 (295)
.+.++.||.+-++|.|||++.|-. .+|+++.+.|.-.
T Consensus 107 kayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~ 145 (190)
T KOG4042|consen 107 KAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATN 145 (190)
T ss_pred eeEecCCcEEcCCceeccceEEecccccCCcceEEcccc
Confidence 999999999999999999999985 4899999999654
No 164
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.12 E-value=9.3e-06 Score=77.51 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=38.7
Q ss_pred CeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045 181 GVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250 (295)
Q Consensus 181 ~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V 250 (295)
.+.|++++.|+ ++.|+++|+|++. ..++.||++|.||++|+| .+++|+++|.||++++|...+
T Consensus 282 ~~~i~~~~~i~-~~~Ig~~~~I~~~-----v~~s~ig~~~~I~~~~~i-~~svi~~~~~i~~~~~i~~~i 344 (380)
T PRK05293 282 PQYIAENAKVK-NSLVVEGCVVYGT-----VEHSVLFQGVQVGEGSVV-KDSVIMPGAKIGENVVIERAI 344 (380)
T ss_pred CCEECCCCEEe-cCEECCCCEEcce-----ecceEEcCCCEECCCCEE-ECCEEeCCCEECCCeEEeEEE
Confidence 34444444442 4455555555421 125788888888888877 567777777777777766543
No 165
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.6e-05 Score=75.70 Aligned_cols=78 Identities=40% Similarity=0.558 Sum_probs=48.8
Q ss_pred eeeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEE
Q 039045 160 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 234 (295)
Q Consensus 160 ~~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~I 234 (295)
-.+.|++++.||.++.|.. .++||++|.||+++.| .+++.|+..... .+..||++|.||++. . |
T Consensus 260 gp~~ig~~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i---~~sIi~~~~~ig~~~-~-----i 328 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGP--YTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI---GDSIIGENCKIGASL-I-----I 328 (358)
T ss_pred CCEEECCCCEECCCCEECC--CcEECCCCEECCCcEEEeeEEEcCCEECCCCEE---eeeEEcCCcEECCce-e-----e
Confidence 3577888888888888877 7777777777766543 334444432222 256788888888722 2 5
Q ss_pred CCCCEECCCCEEcCC
Q 039045 235 GEGAKVGAGSVVLID 249 (295)
Q Consensus 235 G~~~~IgagsvV~~~ 249 (295)
|+ +.+|.++.+.++
T Consensus 329 ~d-~~~g~~~~i~~g 342 (358)
T COG1208 329 GD-VVIGINSEILPG 342 (358)
T ss_pred cc-eEecCceEEcCc
Confidence 55 666665555555
No 166
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.2e-06 Score=77.61 Aligned_cols=51 Identities=37% Similarity=0.590 Sum_probs=34.6
Q ss_pred cEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcC
Q 039045 188 AVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLI 248 (295)
Q Consensus 188 ~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~ 248 (295)
++||.||.||..++|- +..|-+||.||.||.| +|+.||.++.||.||.+..
T Consensus 352 SviG~nC~Ig~~~~v~---------nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 352 SVIGSNCDIGERVKVA---------NSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred eeecCCccccCCcEEE---------eeEeecCcEecCCcce-ecceecccceecCCCeeee
Confidence 4566666666666664 4567777777777766 6777777777777777664
No 167
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.08 E-value=1.5e-05 Score=77.54 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=30.5
Q ss_pred CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCC
Q 039045 187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDV 250 (295)
Q Consensus 187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~V 250 (295)
+++||++|.| .++.|. ++.||++|.||.+|.| .+++|+++|.||.++.|...+
T Consensus 327 ~s~i~~~~~i-~~~~i~---------~svi~~~~~I~~~~~i-~~svi~~~~~I~~~~~i~~~i 379 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR---------RSVLFSRVRVNSFSNV-EDSVLLPDVNVGRSCRLRRCV 379 (425)
T ss_pred eCEEcCCcEE-cCcccc---------CCEECCCCEECCCCEE-eeeEEcCCCEECCCCEEeeEE
Confidence 4555556555 455553 3566666666666666 455566666666666555443
No 168
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.06 E-value=1.3e-05 Score=77.45 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=49.7
Q ss_pred ECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEE
Q 039045 184 IGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 263 (295)
Q Consensus 184 IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~ 263 (295)
+..++.||++|.|+ +++|. ++.||++|.|+++|.|. ++.|+++|.||.+++|...+-...+.+|..+++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~---------~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVR---------NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeE---------cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence 34456777777776 66664 46888888888888884 677888888888888877655444555666666
Q ss_pred ec
Q 039045 264 VG 265 (295)
Q Consensus 264 i~ 265 (295)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 54
No 169
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.05 E-value=3e-05 Score=73.46 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=18.9
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
++.||++|.|+.+|+| .++.|++++.||.++.|.
T Consensus 310 ~s~i~~~~~I~~~~~i-~~sii~~~~~v~~~~~l~ 343 (361)
T TIGR02091 310 HSVLGIRVRIGSGSTV-EDSVIMGDVGIGRGAVIR 343 (361)
T ss_pred ccEECCCCEECCCCEE-eeeEEeCCCEECCCCEEe
Confidence 3455555666555555 355555555555555554
No 170
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2e-05 Score=74.30 Aligned_cols=74 Identities=28% Similarity=0.443 Sum_probs=43.0
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEE-----ccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEEC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSI-----LHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIG 235 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I-----~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG 235 (295)
...++++++|++++.|. .-+||.+|.||+.|.| .+|++||.+... .++.||.++.||+|+++ .||.||
T Consensus 334 d~iv~~~t~i~~~s~ik---~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I---ensIIg~gA~Ig~gs~L-~nC~Ig 406 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIK---RSVIGSNCDIGERVKVANSILMDNVVVGDGVNI---ENSIIGMGAQIGSGSKL-KNCIIG 406 (433)
T ss_pred hhccCCCceecccceee---eeeecCCccccCCcEEEeeEeecCcEecCCcce---ecceecccceecCCCee-eeeEec
Confidence 34577777777777666 3577888877776644 345555543322 24566666666666666 344444
Q ss_pred CCCEEC
Q 039045 236 EGAKVG 241 (295)
Q Consensus 236 ~~~~Ig 241 (295)
.+=+|.
T Consensus 407 ~~yvVe 412 (433)
T KOG1462|consen 407 PGYVVE 412 (433)
T ss_pred CCcEEc
Confidence 433333
No 171
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.95 E-value=4.2e-05 Score=74.55 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=14.4
Q ss_pred ceecCceEEcCCcCeEECCCcEEcCCcEEccCCEE
Q 039045 168 AKIGKGILFDHATGVVIGETAVIGNNVSILHHVTL 202 (295)
Q Consensus 168 a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~I 202 (295)
+.||++|.| . ++.|+ +++||++|.|+.+++|
T Consensus 309 ~~ig~~~~i-~--~~~i~-~svi~~~~~Ig~~~~i 339 (429)
T PRK02862 309 SIIAEGCII-K--NCSIH-HSVLGIRSRIESGCTI 339 (429)
T ss_pred CEECCCCEE-C--CcEEE-EEEEeCCcEECCCCEE
Confidence 445555555 2 33333 2445555555554444
No 172
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=8.6e-05 Score=70.62 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred hhcccchhhH----HHHHHHHHHHHhcCChhHHHHHhhcccc-----ceeeEeC-----CCceecCceEEcCCcCeEECC
Q 039045 121 CLLNYKGFLA----CQAHRVAHKLWTQSRRPLALALQSRISD-----VFAVDIH-----PAAKIGKGILFDHATGVVIGE 186 (295)
Q Consensus 121 ~~~~~~gf~a----l~~~r~a~~l~~~~~~~~~~~~~~~~~~-----~~~v~Ig-----~~a~IG~~v~I~~~~~v~IG~ 186 (295)
..+.|.|||. +..|.-++.-..+..+.+..+-+.+-.. .....+. .++.|+.||+|. | ++-
T Consensus 236 ~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~---G-~V~- 310 (393)
T COG0448 236 YAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIIS---G-TVE- 310 (393)
T ss_pred EEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEE---e-EEE-
Confidence 3345678886 6666666665544333322221111100 0111121 233455555554 2 222
Q ss_pred CcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCC
Q 039045 187 TAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLID 249 (295)
Q Consensus 187 ~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~ 249 (295)
+++|+.+|.|+.+++|. ++.|-.+|.||.||+| .++.|..+|+|+.|.+|..+
T Consensus 311 nSVL~~~v~I~~gs~i~---------~svim~~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 311 NSVLFRGVRIGKGSVIE---------NSVIMPDVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeEEecCeEECCCCEEE---------eeEEeCCcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence 35667777777777764 4667777777777766 56666666666666666654
No 173
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.85 E-value=1.2e-05 Score=74.50 Aligned_cols=84 Identities=26% Similarity=0.244 Sum_probs=48.4
Q ss_pred eCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCC---CCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG---DRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~---~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
.-|.+.|-.++.++. -+.+|++|.||.|++||.+++|+.+..... -+...++++++| +.+.++.+++||.+++|
T Consensus 255 ~~p~~~i~~nvlvd~--~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~~~~IG~~~~i 331 (371)
T KOG1322|consen 255 LLPGSKIVGNVLVDS--IASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEI-SSSIVGWNVPIGIWARI 331 (371)
T ss_pred ccCCccccccEeecc--ccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHH-HhhhccccccccCceEE
Confidence 344566777777766 566666666666666666666654322210 012244444443 33455667777777777
Q ss_pred CCCCEEcCCC
Q 039045 241 GAGSVVLIDV 250 (295)
Q Consensus 241 gagsvV~~~V 250 (295)
..++++.+||
T Consensus 332 d~~a~lG~nV 341 (371)
T KOG1322|consen 332 DKNAVLGKNV 341 (371)
T ss_pred ecccEeccce
Confidence 7777777764
No 174
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.7e-05 Score=70.40 Aligned_cols=56 Identities=32% Similarity=0.337 Sum_probs=38.3
Q ss_pred eEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 182 VVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 182 v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
..||+|+.||.++.||+|+.| +.+.|-++|.|..|++|+ ++.||-+|.||--+.|-
T Consensus 301 AkiGPNVSIga~vrvg~GvRl---------~~sIIl~d~ei~enavVl-~sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 301 AKIGPNVSIGANVRVGPGVRL---------RESIILDDAEIEENAVVL-HSIIGWKSSIGRWARVE 356 (407)
T ss_pred cccCCCceecCCceecCCcee---------eeeeeccCcEeeccceEE-eeeecccccccceeeec
Confidence 344445555555555555555 367888899999998886 56688888888666665
No 175
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.75 E-value=8.9e-05 Score=70.53 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCCCCcEEEccCcEE
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVLIDVPARATAVGNPARL 263 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~ 263 (295)
++.||++|.|+.||.| .++.|+++|.|++++.+...+-....++|.-+++
T Consensus 304 ~s~i~~~~~I~~~~~i-~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 304 NSILSRGVHVGKDALI-KNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCEECCCCEECCCCEE-EeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence 5678888888888877 6667777777777777766544444444544444
No 176
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.72 E-value=3.5e-05 Score=48.26 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=5.7
Q ss_pred CCcEEcCCcEEccCCE
Q 039045 186 ETAVIGNNVSILHHVT 201 (295)
Q Consensus 186 ~~~~IG~~v~I~~gv~ 201 (295)
+++.||++|.|+++++
T Consensus 18 ~~~~Ig~~~~I~~~~~ 33 (36)
T PF00132_consen 18 GGVVIGDNCVIGPGVV 33 (36)
T ss_dssp TTEEE-TTEEEETTEE
T ss_pred CCCEECCCCEEcCCCE
Confidence 3333333333333333
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.71 E-value=3.9e-05 Score=47.88 Aligned_cols=15 Identities=67% Similarity=1.094 Sum_probs=8.4
Q ss_pred CEECCCCEECCCCEE
Q 039045 214 PKIGDGVLIGAGATI 228 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I 228 (295)
++|||+|.|++|++|
T Consensus 18 i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVI 32 (34)
T ss_dssp SEE-TTEEE-TTEEE
T ss_pred CEEcCCCEECCCCEE
Confidence 466666666666665
No 178
>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria [].; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....
Probab=97.67 E-value=3.1e-06 Score=66.70 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=45.3
Q ss_pred CCCCCccccCccCCCChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHH
Q 039045 10 SPARNLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLA 66 (295)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~ 66 (295)
+++..+.+.+.+.....+.|.+.++.|+++++++||++.++++ .+|++|||++.++
T Consensus 50 ~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av~~RDPA~~~~~~-~lL~~kGF~AlQa 105 (105)
T PF06426_consen 50 LSADQLRDLFRDALEADPEIVEAARADLQAVYERDPACPSYLE-PLLFFKGFHALQA 105 (105)
T ss_dssp S-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSTT--STHH-HHHH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCccccchhH-HHHHCccHHHhcC
Confidence 4555577777888888899999999999999999999999887 4999999999874
No 179
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.63 E-value=0.00011 Score=71.76 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=49.6
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCC----------CCCCCCEECCCCEECCCCEECC
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKA----------SGDRHPKIGDGVLIGAGATILG 230 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~----------~~~~~~~IG~~v~IGa~a~I~~ 230 (295)
++.|++++.| +++.|.+ .+||.+|.||++|.|-..+..++.... .+..++.||++|.| .+++|..
T Consensus 308 ~~~ig~~~~i-~~~~i~~---svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~ 382 (429)
T PRK02862 308 ESIIAEGCII-KNCSIHH---SVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTI-KRAIIDK 382 (429)
T ss_pred eCEECCCCEE-CCcEEEE---EEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEE-EEEEECC
Confidence 4678888888 7888864 588888888888888766665531100 01123556666666 4555566
Q ss_pred CCEECCCCEECCCC
Q 039045 231 NVKIGEGAKVGAGS 244 (295)
Q Consensus 231 ~v~IG~~~~Igags 244 (295)
++.||++|.|..+.
T Consensus 383 ~~~i~~~~~~~~~~ 396 (429)
T PRK02862 383 NARIGNNVRIVNKD 396 (429)
T ss_pred CcEECCCcEEecCC
Confidence 66666666665443
No 180
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00045 Score=63.39 Aligned_cols=68 Identities=26% Similarity=0.372 Sum_probs=34.4
Q ss_pred eeEeCCCceecCceEEcCCcCeEECCCcEEcCCcEEccCCEECCCCCCCCCCCCEECCCCEECCCCEECCCCEECCCCEE
Q 039045 161 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKIGEGAKV 240 (295)
Q Consensus 161 ~v~Ig~~a~IG~~v~I~~~~~v~IG~~~~IG~~v~I~~gv~Igg~~~~~~~~~~~IG~~v~IGa~a~I~~~v~IG~~~~I 240 (295)
.+.|||+|++.+.+.|++ +|.||.+++||++|.|.....+. .+.|.+|+.+ -+++|+-.++||.-+.|
T Consensus 288 dVyIhPsakvhptAkiGP--NVSIga~vrvg~GvRl~~sIIl~---------d~ei~enavV-l~sIigw~s~iGrWaRV 355 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGP--NVSIGANVRVGPGVRLRESIILD---------DAEIEENAVV-LHSIIGWKSSIGRWARV 355 (407)
T ss_pred eeEEcCcceeCCccccCC--CceecCCceecCCceeeeeeecc---------CcEeeccceE-Eeeeecccccccceeee
Confidence 355555555555555555 55555555555555554443332 3444444433 34444444445544444
No 181
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.0013 Score=62.80 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=4.0
Q ss_pred CCCcEEEcc
Q 039045 251 PARATAVGN 259 (295)
Q Consensus 251 p~~~~v~G~ 259 (295)
|+|..+.|.
T Consensus 355 ~~g~~i~~~ 363 (393)
T COG0448 355 GEGVVIGGD 363 (393)
T ss_pred CCCcEEcCC
Confidence 444444444
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.33 E-value=0.012 Score=52.25 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=5.5
Q ss_pred CCcEEEccCcEE
Q 039045 252 ARATAVGNPARL 263 (295)
Q Consensus 252 ~~~~v~G~PA~~ 263 (295)
.+-+++-+|--+
T Consensus 108 ~g~Ivirnpvpv 119 (277)
T COG4801 108 KGWIVIRNPVPV 119 (277)
T ss_pred cceEEEcCCccE
Confidence 334445555444
No 183
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.23 E-value=0.0073 Score=50.17 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=35.1
Q ss_pred eCCCceecCceEEcCCcCeEECCC---cEEcCCcEEccCCEECCCCC-----CCCCCCCEECCCCEECCCCEE
Q 039045 164 IHPAAKIGKGILFDHATGVVIGET---AVIGNNVSILHHVTLGGTGK-----ASGDRHPKIGDGVLIGAGATI 228 (295)
Q Consensus 164 Ig~~a~IG~~v~I~~~~~v~IG~~---~~IG~~v~I~~gv~Igg~~~-----~~~~~~~~IG~~v~IGa~a~I 228 (295)
|-..+.|+++|.+.+ .+++-.+ ..||+|+.|...++|..... ...+..-.||.+..+--||..
T Consensus 23 irGdvti~~gcVvHP--~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s 93 (190)
T KOG4042|consen 23 IRGDVTIKEGCVVHP--FAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS 93 (190)
T ss_pred cccceEecCCcEecc--eEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence 344445666666655 3333322 36788888888888765321 112234578887765555433
No 184
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=95.86 E-value=0.013 Score=52.15 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=6.2
Q ss_pred EcCCcEEccCCEEC
Q 039045 190 IGNNVSILHHVTLG 203 (295)
Q Consensus 190 IG~~v~I~~gv~Ig 203 (295)
+|+++.++.+++|.
T Consensus 36 ~g~~iivge~v~i~ 49 (277)
T COG4801 36 VGEEIIVGERVRIY 49 (277)
T ss_pred eeeeEEeccCcEEe
Confidence 34444444444444
No 185
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=76.81 E-value=3.7 Score=40.04 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=8.4
Q ss_pred CCEECCCCEECCCCEE
Q 039045 213 HPKIGDGVLIGAGATI 228 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I 228 (295)
++.|+.++.||.||+|
T Consensus 301 ~s~l~~~~~IG~~cIi 316 (414)
T PF07959_consen 301 HSHLGGPWSIGSNCII 316 (414)
T ss_pred eeecCCCCEECCCCEE
Confidence 4455555555555555
No 186
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=73.83 E-value=2.3 Score=31.79 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=16.1
Q ss_pred CCCCCcEEEccCcEEecCCC
Q 039045 249 DVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 249 ~Vp~~~~v~G~PA~~i~~~~ 268 (295)
||||++++.|+||++.+-..
T Consensus 1 DVpPf~~~~G~~a~~~GlN~ 20 (83)
T PF13720_consen 1 DVPPFMLVAGNPARIRGLNL 20 (83)
T ss_dssp BB-TTEEEETTTTEEEEE-H
T ss_pred CCCCeEEecCCccEEeeeeH
Confidence 79999999999999987543
No 187
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=69.14 E-value=5.5 Score=38.82 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=14.4
Q ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEEc
Q 039045 214 PKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL 247 (295)
Q Consensus 214 ~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~ 247 (295)
..|..++.+|++++| +++.++.++.||.+++|.
T Consensus 285 Sil~~~~~vg~~svI-e~s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 285 SILEGGVSVGPGSVI-EHSHLGGPWSIGSNCIIS 317 (414)
T ss_pred eEecCCceECCCCEE-EeeecCCCCEECCCCEEE
Confidence 344444444444443 344444444444444443
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=48.61 E-value=18 Score=39.20 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCCEEc--------CCCCCCcEEEccC
Q 039045 213 HPKIGDGVLIGAGATILGNVKIGEGAKVGAGSVVL--------IDVPARATAVGNP 260 (295)
Q Consensus 213 ~~~IG~~v~IGa~a~I~~~v~IG~~~~IgagsvV~--------~~Vp~~~~v~G~P 260 (295)
+.+|..++.++.++.+.+++.||.+..||.+++|+ -.||+++++-++|
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vp 391 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVP 391 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEE
Confidence 34555566666655544556666666666666654 1378888877777
No 189
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=32.07 E-value=42 Score=33.39 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=24.6
Q ss_pred CCCEECCCCEECCCCEECCCCEECCCC----EECCCCEE
Q 039045 212 RHPKIGDGVLIGAGATILGNVKIGEGA----KVGAGSVV 246 (295)
Q Consensus 212 ~~~~IG~~v~IGa~a~I~~~v~IG~~~----~IgagsvV 246 (295)
.+-+|.-+|++|.|+++.|.|+|-++. .|-+|+++
T Consensus 420 d~LtV~Gdv~fG~~v~l~G~v~i~~~~~~~~~ip~g~~l 458 (469)
T PLN02474 420 DSLKVSGDVWFGSGIVLKGKVTITAKSGVKLEIPDGAVL 458 (469)
T ss_pred CeEEEeeeeEECCCcEEEEEEEEEcCCCCeeecCCCcEe
Confidence 466888888888888888887776543 44455444
No 190
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=30.91 E-value=32 Score=26.16 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=8.7
Q ss_pred CCCEECCCCEECCCCEEcCCC
Q 039045 230 GNVKIGEGAKVGAGSVVLIDV 250 (295)
Q Consensus 230 ~~v~IG~~~~IgagsvV~~~V 250 (295)
+++...+...|...+.|..++
T Consensus 62 G~v~a~~~v~i~~~~~v~G~i 82 (101)
T PF04519_consen 62 GNVEASGKVEIYGTARVEGDI 82 (101)
T ss_pred EEEEECceEEEeCCEEEEEEE
Confidence 333333334444444444443
No 191
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=29.53 E-value=67 Score=34.94 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=5.1
Q ss_pred hcCCCCHHHH
Q 039045 55 ILSHSSLERS 64 (295)
Q Consensus 55 il~~~~~~~~ 64 (295)
+|.-|+++..
T Consensus 209 ~LqKps~eel 218 (974)
T PRK13412 209 MLQKPSLEEL 218 (974)
T ss_pred HhcCCCHHHH
Confidence 4455555544
No 192
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=27.48 E-value=67 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHHhhhcCcchhhhHH
Q 039045 23 GDDEAWVWAQIKAEARRDAESEPALASYLY 52 (295)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 52 (295)
-.....+|+.+|.|.+.++..+++.+..|+
T Consensus 25 k~~F~~vW~~VK~~ve~~i~~~~~q~~LL~ 54 (132)
T PF10360_consen 25 KASFGEVWETVKGQVEEAIDPNEAQRNLLE 54 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 334567999999999999998877777655
No 193
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=26.74 E-value=2e+02 Score=29.84 Aligned_cols=70 Identities=23% Similarity=0.150 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHHhhhcCcchhhhHHHHhcCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHhccC
Q 039045 24 DDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCSSTLLSTLLYDLFLDTFSS 93 (295)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~il~~~~~~~~l~~~la~~l~~~~~~~~~l~~~~~~~~~~ 93 (295)
+..+++-+.++.-.+..+..-.-..-|.+..|+++++|-..+..|+.+++--......++.++|...|.+
T Consensus 43 ~~~p~~~~~l~~~l~~~l~~~~~~~L~~d~Gi~~~~gF~~El~~Rl~~r~lP~~~d~~~l~~lf~~lF~~ 112 (643)
T PF10136_consen 43 ERNPELRAALRRYLRRLLRERRQYPLLTDSGILSRSGFFSELSRRLYERLLPAPPDPNDLSDLFNLLFPR 112 (643)
T ss_pred HhCHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCCccHHHHHHHHHHhhcCCCCCChhHHHHHHHHHCCC
Confidence 3445566666666777666666666777778999999999999999999977778888999999888743
No 194
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=22.82 E-value=2e+02 Score=23.86 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=27.2
Q ss_pred CCEECCCCEECCCCEEcCCCCCCcEEEccCcEEecCCC
Q 039045 231 NVKIGEGAKVGAGSVVLIDVPARATAVGNPARLVGGKE 268 (295)
Q Consensus 231 ~v~IG~~~~IgagsvV~~~Vp~~~~v~G~PA~~i~~~~ 268 (295)
++..-+.+.|.+++.|..||....+.+-.-|.+.+...
T Consensus 84 ni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~~ 121 (146)
T COG1664 84 NILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDCE 121 (146)
T ss_pred EEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEEE
Confidence 35566677777777888887777777777777777643
Done!