BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039046
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 98.2 bits (243), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 4/85 (4%)
Query: 10 VISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEG--SPKKPGKPIETFIFAIFDENDK 67
++SES W + G + NARTY NLI HVK G +PKKPGK IET++FA+FDEN+K
Sbjct: 233 IVSESGWPSEG--HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 68 QGVEIERHWGLFAPDKQPKYQVNFN 92
+G E+H+GLF PD++PKYQ+NFN
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 4/85 (4%)
Query: 10 VISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEG--SPKKPGKPIETFIFAIFDENDK 67
++S S W + G + NARTY NLI HVK G +PKKPGK IET++FA+FDEN+K
Sbjct: 233 IVSASGWPSEG--HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEK 290
Query: 68 QGVEIERHWGLFAPDKQPKYQVNFN 92
+G E+H+GLF PD++PKYQ+NFN
Sbjct: 291 KGEASEKHFGLFNPDQRPKYQLNFN 315
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 95.5 bits (236), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 10 VISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQG 69
V+SES W +AG DN RTY +NLIQHVK G+PK+P + IET++FA+FDEN KQ
Sbjct: 237 VVSESGWPSAGA--FAATFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQP 294
Query: 70 VEIERHWGLFAPDKQPKYQVNFN 92
E+E+H+GLF P+K KY +NF+
Sbjct: 295 -EVEKHFGLFFPNKWQKYNLNFS 316
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 88.6 bits (218), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 12 SESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVE 71
SES W +AGG + NA+TYN NLI+HV G+P++PGK IE +IF +F+EN K G
Sbjct: 235 SESGWPSAGGGAE-ASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAG-G 292
Query: 72 IERHWGLFAPDKQPKYQVNF 91
IE+++GLF P+KQP YQ++F
Sbjct: 293 IEQNFGLFYPNKQPVYQISF 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 10 VISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQG 69
V+SES W +AGG + NARTYN LI HV G+PKK + +ET+IFA+F+EN K G
Sbjct: 228 VVSESGWPSAGG--FAASAGNARTYNQGLINHVGGGTPKKR-EALETYIFAMFNENQKTG 284
Query: 70 VEIERHWGLFAPDKQPKYQVNF 91
ER +GLF PDK P Y + F
Sbjct: 285 DATERSFGLFNPDKSPAYNIQF 306
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 79.3 bits (194), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 2 HVGARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAI 61
H G+ V+SES W + GG NAR YN +LI HV G+P+ PG IET+IFA+
Sbjct: 221 HGGSSVKLVVSESGWPSGGGTA--ATPANARFYNQHLINHVGRGTPRHPGA-IETYIFAM 277
Query: 62 FDENDKQGVEIERHWGLFAPDKQPKYQVNF 91
F+EN K +E++WGLF P+ Q Y +NF
Sbjct: 278 FNENQKDS-GVEQNWGLFYPNMQHVYPINF 306
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 32 RTYNNNLIQHVKEGSPKKPG------KPIETFIFAIFDENDKQGVEIERHWGLF 79
R YNN ++V +G K+PG +P IF D G E +R LF
Sbjct: 277 RVYNNT-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 329
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 32 RTYNNNLIQHVKEGSPKKPG------KPIETFIFAIFDENDKQGVEIERHWGLF 79
R YNN ++V +G K+PG +P IF D G E +R LF
Sbjct: 204 RVYNNT-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 256
>pdb|2F9Z|C Chain C, Complex Between The Chemotaxis Deamidase Ched And The
Chemotaxis Phosphatase Chec From Thermotoga Maritima
pdb|2F9Z|D Chain D, Complex Between The Chemotaxis Deamidase Ched And The
Chemotaxis Phosphatase Chec From Thermotoga Maritima
Length = 159
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 45 GSPKKPGKPIETFIFAIFDENDKQGVEIER 74
G KPGK +T + + +E K G ++ER
Sbjct: 54 GKTDKPGKYADTAVKTLVEELKKMGAKVER 83
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 3 VGARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSP 47
+G + ++VI E +W D + + TY + + H+ EG P
Sbjct: 240 IGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEP 284
>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|C Chain C, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|E Chain E, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
pdb|2ZBK|G Chain G, Crystal Structure Of An Intact Type Ii Dna
Topoisomerase: Insights Into Dna Transfer Mechanisms
Length = 389
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 37 NLIQHVKEGSPKKPGKPIETFIFAIFDE 64
NL++ +K+G P P+ T AI+DE
Sbjct: 27 NLVEQLKKGEPLVMEIPMRTLSNAIYDE 54
>pdb|1B7B|A Chain A, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|B Chain B, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|C Chain C, Carbamate Kinase From Enterococcus Faecalis
pdb|1B7B|D Chain D, Carbamate Kinase From Enterococcus Faecalis
pdb|2WE4|A Chain A, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|B Chain B, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|C Chain C, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE4|D Chain D, Carbamate Kinase From Enterococcus Faecalis Bound To A
Sulfate Ion And Two Water Molecules, Which Mimic The
Substrate Carbamyl Phosphate
pdb|2WE5|A Chain A, Carbamate Kinase From Enterococcus Faecalis Bound To
Mgadp
pdb|2WE5|B Chain B, Carbamate Kinase From Enterococcus Faecalis Bound To
Mgadp
pdb|2WE5|C Chain C, Carbamate Kinase From Enterococcus Faecalis Bound To
Mgadp
Length = 310
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 17 LAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFI 58
L G RL+++ N N L+Q S K P P++T +
Sbjct: 38 LIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCV 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,167,361
Number of Sequences: 62578
Number of extensions: 121180
Number of successful extensions: 302
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 12
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)