Query 039046
Match_columns 92
No_of_seqs 106 out of 1012
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.6E-34 5.6E-39 216.6 6.1 88 2-91 223-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 99.8 2.8E-21 6E-26 144.0 7.8 71 6-83 231-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 97.1 0.0016 3.4E-08 50.2 6.2 80 6-89 229-329 (332)
4 PF11790 Glyco_hydro_cc: Glyco 96.8 0.0076 1.6E-07 43.9 7.3 67 7-85 166-232 (239)
5 PF00232 Glyco_hydro_1: Glycos 96.5 0.00073 1.6E-08 53.3 0.4 79 4-88 353-442 (455)
6 smart00633 Glyco_10 Glycosyl h 96.0 0.048 1E-06 39.7 7.6 69 6-89 182-251 (254)
7 PRK10150 beta-D-glucuronidase; 95.5 0.12 2.5E-06 42.1 8.6 78 6-88 501-584 (604)
8 TIGR03356 BGL beta-galactosida 95.1 0.065 1.4E-06 42.3 5.7 74 4-83 335-413 (427)
9 PRK13511 6-phospho-beta-galact 93.7 0.21 4.5E-06 39.9 6.0 74 4-83 365-445 (469)
10 PLN02814 beta-glucosidase 93.1 0.22 4.9E-06 40.3 5.2 74 4-84 385-461 (504)
11 PLN02998 beta-glucosidase 92.8 0.24 5.3E-06 40.0 5.1 73 4-83 390-465 (497)
12 PLN02849 beta-glucosidase 91.8 0.55 1.2E-05 38.0 5.9 75 4-84 383-461 (503)
13 PRK09589 celA 6-phospho-beta-g 89.9 1.2 2.6E-05 35.8 6.2 72 7-84 368-447 (476)
14 TIGR01233 lacG 6-phospho-beta- 89.4 0.92 2E-05 36.3 5.3 74 4-83 364-443 (467)
15 COG3867 Arabinogalactan endo-1 88.2 1 2.3E-05 35.2 4.6 52 6-60 275-341 (403)
16 KOG0626 Beta-glucosidase, lact 87.1 2.5 5.5E-05 34.7 6.4 80 3-88 404-498 (524)
17 PRK09852 cryptic 6-phospho-bet 86.3 2.7 5.9E-05 33.8 6.2 72 7-84 366-444 (474)
18 PRK09593 arb 6-phospho-beta-gl 86.0 3 6.4E-05 33.6 6.3 72 7-84 369-448 (478)
19 PRK15014 6-phospho-beta-glucos 82.5 3.7 7.9E-05 33.1 5.4 71 7-83 369-447 (477)
20 PF00150 Cellulase: Cellulase 81.8 3.4 7.4E-05 29.2 4.6 16 6-21 236-251 (281)
21 COG4782 Uncharacterized protei 64.9 21 0.00046 28.3 5.5 40 2-44 143-186 (377)
22 PF01229 Glyco_hydro_39: Glyco 50.9 71 0.0015 25.5 6.5 75 2-86 270-350 (486)
23 PRK10340 ebgA cryptic beta-D-g 47.3 36 0.00078 30.1 4.6 69 5-88 504-591 (1021)
24 PF05990 DUF900: Alpha/beta hy 46.1 82 0.0018 22.6 5.7 37 3-42 46-86 (233)
25 PF14606 Lipase_GDSL_3: GDSL-l 44.7 90 0.0019 22.1 5.6 43 2-45 89-135 (178)
26 PF00331 Glyco_hydro_10: Glyco 44.4 27 0.00058 26.4 3.0 78 6-87 233-311 (320)
27 PF14903 WG_beta_rep: WG conta 42.9 23 0.0005 17.3 1.8 16 76-91 1-16 (35)
28 cd00598 GH18_chitinase-like Th 40.9 81 0.0018 21.3 4.8 39 5-43 63-101 (210)
29 cd02879 GH18_plant_chitinase_c 35.6 78 0.0017 23.5 4.3 40 4-43 64-105 (299)
30 PF12965 DUF3854: Domain of un 34.4 26 0.00056 23.4 1.4 11 3-13 7-17 (130)
31 PF03366 YEATS: YEATS family; 32.7 27 0.00059 21.6 1.2 11 7-17 41-51 (84)
32 cd06548 GH18_chitinase The GH1 32.0 1.1E+02 0.0024 22.8 4.7 40 4-43 82-122 (322)
33 TIGR03687 pupylate_cterm ubiqu 28.8 58 0.0013 17.1 1.9 14 28-41 17-30 (33)
34 PF03662 Glyco_hydro_79n: Glyc 28.4 25 0.00055 27.1 0.7 18 5-22 284-301 (319)
35 cd06545 GH18_3CO4_chitinase Th 27.8 1.5E+02 0.0032 21.3 4.6 38 5-42 58-95 (253)
36 PF13547 GTA_TIM: GTA TIM-barr 27.7 37 0.00079 26.2 1.4 37 6-42 206-263 (299)
37 COG2159 Predicted metal-depend 23.8 51 0.0011 24.7 1.6 19 3-21 189-209 (293)
38 PF15123 DUF4562: Domain of un 23.8 28 0.0006 23.3 0.1 13 7-19 52-64 (116)
39 COG4519 Uncharacterized protei 23.5 10 0.00023 24.1 -1.9 16 4-19 22-37 (95)
40 KOG0524 Pyruvate dehydrogenase 22.9 56 0.0012 25.5 1.6 35 8-42 290-326 (359)
41 cd02872 GH18_chitolectin_chito 22.3 1.6E+02 0.0035 22.1 4.0 40 4-43 68-109 (362)
42 PRK05508 methionine sulfoxide 21.7 34 0.00073 22.9 0.2 10 12-21 52-61 (119)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.6e-34 Score=216.60 Aligned_cols=88 Identities=47% Similarity=0.854 Sum_probs=66.1
Q ss_pred CCCCCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEeecC
Q 039046 2 HVGARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGLFAP 81 (92)
Q Consensus 2 ~~~~~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGlf~~ 81 (92)
.|+++++|+||||||||+|+.+ |+.+||+.|++++++++.+|||+||+..+++||||||||+||++..+|+|||||++
T Consensus 223 ~g~~~~~vvv~ETGWPs~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~ 300 (310)
T PF00332_consen 223 LGFPNVPVVVGETGWPSAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYP 300 (310)
T ss_dssp TT-TT--EEEEEE---SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-T
T ss_pred hCCCCceeEEeccccccCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECC
Confidence 5889999999999999999955 89999999999999999999999999999999999999999998889999999999
Q ss_pred CCCeeeeecc
Q 039046 82 DKQPKYQVNF 91 (92)
Q Consensus 82 d~~~ky~l~~ 91 (92)
|++|||+|+|
T Consensus 301 d~~~ky~~~f 310 (310)
T PF00332_consen 301 DGTPKYDLDF 310 (310)
T ss_dssp TSSBSS----
T ss_pred CCCeecCCCC
Confidence 9999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.8e-21 Score=143.97 Aligned_cols=71 Identities=20% Similarity=0.486 Sum_probs=63.5
Q ss_pred CceEEEeeeccCCCCCC--CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCC--CCCCceEeecC
Q 039046 6 RWIFVISESEWLAAGGD--RLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGV--EIERHWGLFAP 81 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~~--~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~--~~E~~wGlf~~ 81 (92)
+++|+|+||||||.|.+ .++||++||++|+++++|.++. .++++|+||+|||+||.++ .+|+|||++..
T Consensus 231 ~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~s 303 (305)
T COG5309 231 KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLSS 303 (305)
T ss_pred CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-------cCccEEEeeeccccccCccccchhhceeeecc
Confidence 49999999999999996 5789999999999999998842 3799999999999999854 68999999988
Q ss_pred CC
Q 039046 82 DK 83 (92)
Q Consensus 82 d~ 83 (92)
++
T Consensus 304 ~~ 305 (305)
T COG5309 304 DR 305 (305)
T ss_pred CC
Confidence 74
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.11 E-value=0.0016 Score=50.20 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=44.5
Q ss_pred CceEEEeeeccCCCCCC---------------CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCC---
Q 039046 6 RWIFVISESEWLAAGGD---------------RLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDK--- 67 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~~---------------~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k--- 67 (92)
+|+|+|.|||||..-.. +-.+|++.|+.|++++++.++. .|- +..+-+|+-|----+-+
T Consensus 229 ~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~GvfYWeP~w~~~~~~~ 305 (332)
T PF07745_consen 229 GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLGVFYWEPAWIPVENGW 305 (332)
T ss_dssp T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEEE-TT-GGGTTHH
T ss_pred CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEEEEeeccccccCCccc
Confidence 68999999999998221 1136899999999999999843 111 23566776553322211
Q ss_pred ---CCCCCCCceEeecCCCCeeeee
Q 039046 68 ---QGVEIERHWGLFAPDKQPKYQV 89 (92)
Q Consensus 68 ---~~~~~E~~wGlf~~d~~~ky~l 89 (92)
.+...|.. +||+.++++--.|
T Consensus 306 ~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 306 DWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp HHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred ccCCCCCcccc-ccCCCCCCCchHh
Confidence 12234444 8999888775444
No 4
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.80 E-value=0.0076 Score=43.87 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=45.6
Q ss_pred ceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEeecCCCCe
Q 039046 7 WIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGLFAPDKQP 85 (92)
Q Consensus 7 ~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGlf~~d~~~ 85 (92)
+||+|||.|+... .. .++.+.++.|++..+.++.+ .+ ....++||...+.. ......-.|+..++++
T Consensus 166 kPIWITEf~~~~~-~~--~~~~~~~~~fl~~~~~~ld~-~~----~VeryawF~~~~~~----~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 166 KPIWITEFGCWNG-GS--QGSDEQQASFLRQALPWLDS-QP----YVERYAWFGFMNDG----SGVNPNSALLDADGSL 232 (239)
T ss_pred CCEEEEeecccCC-CC--CCCHHHHHHHHHHHHHHHhc-CC----CeeEEEeccccccc----CCCccccccccCCCCc
Confidence 8999999999872 22 37888999999999999842 12 25568888833332 2334455677766644
No 5
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.52 E-value=0.00073 Score=53.31 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=43.9
Q ss_pred CCCceEEEeeeccCCCCCCCC-CCCHHHH----HHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEe
Q 039046 4 GARWIFVISESEWLAAGGDRL-LMNVDNA----RTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGL 78 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~~~-~as~~na----~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGl 78 (92)
|+++||+|||.|++....... ...-... +.+++.+.+.+..|.+ ..-+|..++.|- +.-.....+.|||
T Consensus 353 Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~-----V~GY~~WSl~Dn-~Ew~~Gy~~rfGl 426 (455)
T PF00232_consen 353 YGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVN-----VRGYFAWSLLDN-FEWAEGYKKRFGL 426 (455)
T ss_dssp HTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-E-----EEEEEEETSB----BGGGGGGSE--S
T ss_pred cCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCC-----eeeEeeeccccc-cccccCccCccCc
Confidence 567999999999988875311 0111222 4444555555556654 346888888884 2333457899999
Q ss_pred ecCC------CCeeee
Q 039046 79 FAPD------KQPKYQ 88 (92)
Q Consensus 79 f~~d------~~~ky~ 88 (92)
++-| |+||-+
T Consensus 427 ~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 427 VYVDFFDTLKRTPKKS 442 (455)
T ss_dssp EEEETTTTTEEEEBHH
T ss_pred eEEcCCCCcCeeeccH
Confidence 9999 677643
No 6
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.02 E-value=0.048 Score=39.74 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=49.1
Q ss_pred CceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecC-CCCCCCCCCCceEeecCCCC
Q 039046 6 RWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDE-NDKQGVEIERHWGLFAPDKQ 84 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe-~~k~~~~~E~~wGlf~~d~~ 84 (92)
+++|+|||..-|... +.+.|+.+++.++..+.+ .| . ...+++..+.|. .|.++ .+-|||+.|.+
T Consensus 182 g~pi~iTE~dv~~~~------~~~~qA~~~~~~l~~~~~-~p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~ 246 (254)
T smart00633 182 GLEIQITELDISGYP------NPQAQAADYEEVFKACLA-HP---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQ 246 (254)
T ss_pred CCceEEEEeecCCCC------cHHHHHHHHHHHHHHHHc-CC---C-eeEEEEeCCccCCcccCC----CCceeECCCCC
Confidence 789999999998753 337788999999998843 12 1 345666666663 44442 46799999999
Q ss_pred eeeee
Q 039046 85 PKYQV 89 (92)
Q Consensus 85 ~ky~l 89 (92)
||-.+
T Consensus 247 ~kpa~ 251 (254)
T smart00633 247 PKPAY 251 (254)
T ss_pred CChhh
Confidence 88543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.50 E-value=0.12 Score=42.13 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=53.5
Q ss_pred CceEEEeeeccCCCCC----CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCC--CCCCceEee
Q 039046 6 RWIFVISESEWLAAGG----DRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGV--EIERHWGLF 79 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~----~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~--~~E~~wGlf 79 (92)
++||+|+|.|..+.-+ .....|.+.|..|+....+.+.+ +|. -+-.|+..+||-....+. ....+.||+
T Consensus 501 ~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~----~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 501 HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR----VPA-VVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc----CCc-eEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 7999999999876432 12235788888888877776632 232 567999999994433211 112478999
Q ss_pred cCCCCeeee
Q 039046 80 APDKQPKYQ 88 (92)
Q Consensus 80 ~~d~~~ky~ 88 (92)
+.|++||-.
T Consensus 576 ~~dr~~k~~ 584 (604)
T PRK10150 576 TRDRQPKSA 584 (604)
T ss_pred cCCCCChHH
Confidence 999999854
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=95.06 E-value=0.065 Score=42.26 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCCceEEEeeeccCCCCCC-CCCCCHHHHHHHHHH----HHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEe
Q 039046 4 GARWIFVISESEWLAAGGD-RLLMNVDNARTYNNN----LIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGL 78 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~-~~~as~~na~~y~~~----~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGl 78 (92)
|++.||+|||.|+...... .....-+..-.|++. +.+.+..|.+. .-++..++.|-- .-.....+.|||
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~Wsl~Dn~-ew~~gy~~rfGl 408 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDV-----RGYFVWSLLDNF-EWAEGYSKRFGL 408 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEeccccccc-chhcccccccce
Confidence 4555899999999754321 100111123334444 44444566653 458888888842 222347899999
Q ss_pred ecCCC
Q 039046 79 FAPDK 83 (92)
Q Consensus 79 f~~d~ 83 (92)
++.|.
T Consensus 409 ~~VD~ 413 (427)
T TIGR03356 409 VHVDY 413 (427)
T ss_pred EEECC
Confidence 99874
No 9
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=93.71 E-value=0.21 Score=39.89 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCC-ceEEEeeeccCCCCCC--CCCCC----HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCce
Q 039046 4 GAR-WIFVISESEWLAAGGD--RLLMN----VDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHW 76 (92)
Q Consensus 4 ~~~-~~vvItEtGWPs~G~~--~~~as----~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~w 76 (92)
|++ .||+|||.|+...... +.... ++--+.+++.+.+.+..|.+. .-+|.-++.|- +.=....++.|
T Consensus 365 Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v-----~GY~~WSl~Dn-fEW~~Gy~~Rf 438 (469)
T PRK13511 365 YPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANV-----KGYFIWSLMDV-FSWSNGYEKRY 438 (469)
T ss_pred cCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeecccccc-cchhcCccCcc
Confidence 444 4799999999754321 10011 112234444444444567653 45888888884 22223478999
Q ss_pred EeecCCC
Q 039046 77 GLFAPDK 83 (92)
Q Consensus 77 Glf~~d~ 83 (92)
||++.|.
T Consensus 439 Gl~~VD~ 445 (469)
T PRK13511 439 GLFYVDF 445 (469)
T ss_pred ceEEECC
Confidence 9999774
No 10
>PLN02814 beta-glucosidase
Probab=93.06 E-value=0.22 Score=40.26 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCCceEEEeeeccCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEeec
Q 039046 4 GARWIFVISESEWLAAGGDRLL---MNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGLFA 80 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~~~~---as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGlf~ 80 (92)
|++.||+|||-|+....+ +.+ -=++--+.+++.+.+++..|.+. .-+|.-++.|- +.-....++.|||++
T Consensus 385 Y~~ppI~ITENG~~~~~~-g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V-----~GY~~WSllDn-fEW~~Gy~~RfGLvy 457 (504)
T PLN02814 385 YNNPPIYILENGMPMKHD-STLQDTPRVEFIQAYIGAVLNAIKNGSDT-----RGYFVWSMIDL-YELLGGYTTSFGMYY 457 (504)
T ss_pred cCCCCEEEECCCCCCCCC-CcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhh-hchhccccCccceEE
Confidence 555689999999975532 100 11222344444444444567653 35888888883 222234799999999
Q ss_pred CCCC
Q 039046 81 PDKQ 84 (92)
Q Consensus 81 ~d~~ 84 (92)
-|..
T Consensus 458 VD~~ 461 (504)
T PLN02814 458 VNFS 461 (504)
T ss_pred ECCC
Confidence 7643
No 11
>PLN02998 beta-glucosidase
Probab=92.84 E-value=0.24 Score=40.00 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=43.9
Q ss_pred CCCceEEEeeeccCCCCCCCCC---CCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEeec
Q 039046 4 GARWIFVISESEWLAAGGDRLL---MNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGLFA 80 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~~~~---as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGlf~ 80 (92)
|++.||+|||-|+....+ +.+ -=++--+.+++.+.+.+..|.+. .-+|.-++.|- +.-....++.|||++
T Consensus 390 Y~~ppI~ITENG~~~~~~-g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V-----~GY~~WSl~Dn-fEW~~Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPHS-SSLVDTTRVKYLSSYIKAVLHSLRKGSDV-----KGYFQWSLMDV-FELFGGYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCCC-CcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhh-hchhccccCccceEE
Confidence 445579999999987531 100 11222344444555555566643 45888888883 232234789999999
Q ss_pred CCC
Q 039046 81 PDK 83 (92)
Q Consensus 81 ~d~ 83 (92)
-|.
T Consensus 463 VD~ 465 (497)
T PLN02998 463 VDF 465 (497)
T ss_pred ECC
Confidence 774
No 12
>PLN02849 beta-glucosidase
Probab=91.76 E-value=0.55 Score=38.05 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCceEEEeeeccCCCCCCCCCCC----HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceEee
Q 039046 4 GARWIFVISESEWLAAGGDRLLMN----VDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWGLF 79 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~~~~as----~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wGlf 79 (92)
|++.||+|||-|.+.......... ++--+.+++.+.+++..|.+. .-+|.-++.|- +.-....++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V-----~GY~~WSl~Dn-fEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDT-----RGYFVWSFMDL-YELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhh-hchhccccCccceE
Confidence 555589999999986543110011 222344444444444566643 35888888884 33233479999999
Q ss_pred cCCCC
Q 039046 80 APDKQ 84 (92)
Q Consensus 80 ~~d~~ 84 (92)
+-|..
T Consensus 457 ~VD~~ 461 (503)
T PLN02849 457 SVNFS 461 (503)
T ss_pred EECCC
Confidence 87643
No 13
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=89.87 E-value=1.2 Score=35.79 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=43.6
Q ss_pred ceEEEeeeccCCCCCC---CCC---CCHHHHHHHHHHHHHHH-hcCCCCCCCCCceEEEEeeecCCCCCCCC-CCCceEe
Q 039046 7 WIFVISESEWLAAGGD---RLL---MNVDNARTYNNNLIQHV-KEGSPKKPGKPIETFIFAIFDENDKQGVE-IERHWGL 78 (92)
Q Consensus 7 ~~vvItEtGWPs~G~~---~~~---as~~na~~y~~~~~~~~-~~gtp~~~~~~~~~y~F~~fDe~~k~~~~-~E~~wGl 78 (92)
+||+|||-|....... +.+ -=++--+.+++.+.+++ ..|.+. .-+|.-++.|- +.-... ..+.|||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V-----~GY~~WSl~Dn-~Ew~~G~y~~RfGl 441 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDL-----MGYTPWGCIDL-VSAGTGEMKKRYGF 441 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCe-----EEEeecccccc-ccccCCccccceee
Confidence 5899999999864431 100 01222344555555555 567653 45888888884 232223 6889999
Q ss_pred ecCCCC
Q 039046 79 FAPDKQ 84 (92)
Q Consensus 79 f~~d~~ 84 (92)
++-|..
T Consensus 442 v~VD~~ 447 (476)
T PRK09589 442 IYVDKD 447 (476)
T ss_pred EEEcCC
Confidence 987653
No 14
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=89.40 E-value=0.92 Score=36.31 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCC-ceEEEeeeccCCCCCC-CCCC----CHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCCCCCCCceE
Q 039046 4 GAR-WIFVISESEWLAAGGD-RLLM----NVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQGVEIERHWG 77 (92)
Q Consensus 4 ~~~-~~vvItEtGWPs~G~~-~~~a----s~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E~~wG 77 (92)
|++ .||+|||-|....... ...- =++--+.+++.+.+.+..|.+. .-+|.-++.|- +.-.....+.||
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v-----~GY~~WSl~Dn-~Ew~~Gy~~RfG 437 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANV-----KGYFIWSLMDV-FSWSNGYEKRYG 437 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhh-hchhccccCccc
Confidence 443 3699999999865421 1001 1222234444444444556543 34777777773 333334789999
Q ss_pred eecCCC
Q 039046 78 LFAPDK 83 (92)
Q Consensus 78 lf~~d~ 83 (92)
|++.|.
T Consensus 438 Lv~VD~ 443 (467)
T TIGR01233 438 LFYVDF 443 (467)
T ss_pred eEEECC
Confidence 999764
No 15
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=88.24 E-value=1 Score=35.18 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=36.7
Q ss_pred CceEEEeeecc--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q 039046 6 RWIFVISESEW--------------LAAGGD-RLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFA 60 (92)
Q Consensus 6 ~~~vvItEtGW--------------Ps~G~~-~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~ 60 (92)
+|.|+|.||+. |+.+.+ +--.+++.|++|.+++|+.+.. .|.. ....+|+.|
T Consensus 275 ~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n-vp~~--~GlGvFYWE 341 (403)
T COG3867 275 HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN-VPKS--NGLGVFYWE 341 (403)
T ss_pred cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh-CCCC--CceEEEEec
Confidence 47899999999 777765 2347889999999999999832 2221 245555544
No 16
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=87.08 E-value=2.5 Score=34.74 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCCCceEEEeeeccCCCCCC---CCCC-----CHHHHHHHHHHHHHHHh-cCCCCCCCCCceEEEEeeecCCCCCCCCCC
Q 039046 3 VGARWIFVISESEWLAAGGD---RLLM-----NVDNARTYNNNLIQHVK-EGSPKKPGKPIETFIFAIFDENDKQGVEIE 73 (92)
Q Consensus 3 ~~~~~~vvItEtGWPs~G~~---~~~a-----s~~na~~y~~~~~~~~~-~gtp~~~~~~~~~y~F~~fDe~~k~~~~~E 73 (92)
.|.|.+|.|+|-|-+..... ..++ =.+..+.|++.+.+++. .|. ....+|+.++.|-- .=.....
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv-----nv~GYf~WSLmDnf-Ew~~Gy~ 477 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV-----NVKGYFVWSLLDNF-EWLDGYK 477 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC-----ceeeEEEeEcccch-hhhcCcc
Confidence 47899999999999887542 1112 23344555555555553 333 23458999999832 1123456
Q ss_pred CceEeecC------CCCeeee
Q 039046 74 RHWGLFAP------DKQPKYQ 88 (92)
Q Consensus 74 ~~wGlf~~------d~~~ky~ 88 (92)
..||||+- .|.||-+
T Consensus 478 ~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 478 VRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred cccccEEEeCCCCCcCCchhH
Confidence 78999994 4556543
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=86.34 E-value=2.7 Score=33.81 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=42.1
Q ss_pred ceEEEeeeccCCCCCC---CCCC---CHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCCC-CCCCCceEee
Q 039046 7 WIFVISESEWLAAGGD---RLLM---NVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQG-VEIERHWGLF 79 (92)
Q Consensus 7 ~~vvItEtGWPs~G~~---~~~a---s~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~~-~~~E~~wGlf 79 (92)
+||+|||-|....... +.+- =++--+.+++.+.+++..|.+. .-+|.-++.|- +.-. +...+.|||+
T Consensus 366 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V-----~GY~~WSl~Dn-~Ew~~G~y~~RfGLv 439 (474)
T PRK09852 366 KPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPL-----MGYTTWGCIDL-VSASTGEMSKRYGFV 439 (474)
T ss_pred CCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCE-----EEEEeeccccc-ccccCCCccceeeeE
Confidence 5799999999865431 1000 1112234444444444566653 35888888884 3322 3368899999
Q ss_pred cCCCC
Q 039046 80 APDKQ 84 (92)
Q Consensus 80 ~~d~~ 84 (92)
+-|..
T Consensus 440 ~VD~~ 444 (474)
T PRK09852 440 YVDRD 444 (474)
T ss_pred EECCC
Confidence 97743
No 18
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=85.95 E-value=3 Score=33.57 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=43.5
Q ss_pred ceEEEeeeccCCCCCCCCC--C----CHHHHHHHHHHHHHHHh-cCCCCCCCCCceEEEEeeecCCCCCC-CCCCCceEe
Q 039046 7 WIFVISESEWLAAGGDRLL--M----NVDNARTYNNNLIQHVK-EGSPKKPGKPIETFIFAIFDENDKQG-VEIERHWGL 78 (92)
Q Consensus 7 ~~vvItEtGWPs~G~~~~~--a----s~~na~~y~~~~~~~~~-~gtp~~~~~~~~~y~F~~fDe~~k~~-~~~E~~wGl 78 (92)
+||+|||-|.......... . =++--+.+++.+.+.+. .|.+. .-+|.-++.|- +.-. ++.++.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v-----~GY~~WSl~Dn-~EW~~G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVEL-----LGYTTWGCIDL-VSAGTGEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchHh-hcccCCCccCeece
Confidence 4899999999865432100 1 12233455555555553 67653 34888888884 2322 337889999
Q ss_pred ecCCCC
Q 039046 79 FAPDKQ 84 (92)
Q Consensus 79 f~~d~~ 84 (92)
++-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 997743
No 19
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=82.47 E-value=3.7 Score=33.07 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=42.4
Q ss_pred ceEEEeeeccCCCCCC---CCC---CCHHHHHHHHHHHHHHHh-cCCCCCCCCCceEEEEeeecCCCCCC-CCCCCceEe
Q 039046 7 WIFVISESEWLAAGGD---RLL---MNVDNARTYNNNLIQHVK-EGSPKKPGKPIETFIFAIFDENDKQG-VEIERHWGL 78 (92)
Q Consensus 7 ~~vvItEtGWPs~G~~---~~~---as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~y~F~~fDe~~k~~-~~~E~~wGl 78 (92)
+||+|||-|....... +.+ -=++--+.+++.+.+++. .|.+. .-+|.-++.|- +.-. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v-----~GY~~WSl~Dn-fEw~~G~y~~RfGl 442 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDL-----MGYTPWGCIDC-VSFTTGQYSKRYGF 442 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCE-----EEEeeccchhh-hcccCCCccCccce
Confidence 5899999999865431 100 112223444555555553 67653 35888888884 2322 337899999
Q ss_pred ecCCC
Q 039046 79 FAPDK 83 (92)
Q Consensus 79 f~~d~ 83 (92)
++-|.
T Consensus 443 ~~VD~ 447 (477)
T PRK15014 443 IYVNK 447 (477)
T ss_pred EEECC
Confidence 98754
No 20
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=81.79 E-value=3.4 Score=29.24 Aligned_cols=16 Identities=25% Similarity=0.379 Sum_probs=13.5
Q ss_pred CceEEEeeeccCCCCC
Q 039046 6 RWIFVISESEWLAAGG 21 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~ 21 (92)
++||+|+|.|+++...
T Consensus 236 g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 236 GKPVVVGEFGWSNNDG 251 (281)
T ss_dssp TSEEEEEEEESSTTTS
T ss_pred CCeEEEeCcCCcCCCC
Confidence 5799999999996554
No 21
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.87 E-value=21 Score=28.31 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCCCCceEEEeeeccCCCCCC---C-CCCCHHHHHHHHHHHHHHHhc
Q 039046 2 HVGARWIFVISESEWLAAGGD---R-LLMNVDNARTYNNNLIQHVKE 44 (92)
Q Consensus 2 ~~~~~~~vvItEtGWPs~G~~---~-~~as~~na~~y~~~~~~~~~~ 44 (92)
+|++.++|+.| |||.|.. + -..|..-++.-+..+++.+..
T Consensus 143 ~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 143 SGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 57788899988 9999993 1 125555566677778887743
No 22
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=50.89 E-value=71 Score=25.52 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=37.0
Q ss_pred CCCCCceEEEeeeccCCCCCCC--CCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe----eecCCCCCCCCCCCc
Q 039046 2 HVGARWIFVISESEWLAAGGDR--LLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFA----IFDENDKQGVEIERH 75 (92)
Q Consensus 2 ~~~~~~~vvItEtGWPs~G~~~--~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~----~fDe~~k~~~~~E~~ 75 (92)
.++|++++.+|| |.+.-... -.-|.-+|+-..+++++.... .++.|-|= .|.|.-.+...+-.-
T Consensus 270 e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~--------~l~~~sywt~sD~Fee~~~~~~pf~gg 339 (486)
T PF01229_consen 270 EADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA--------FLDSFSYWTFSDRFEENGTPRKPFHGG 339 (486)
T ss_dssp SSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG--------T-SEEEES-SBS---TTSS-SSSSSS-
T ss_pred ccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh--------hhhhhhccchhhhhhccCCCCCceecc
Confidence 467899999999 87766531 124555566556666666521 23333322 243432233345666
Q ss_pred eEeecCCCCee
Q 039046 76 WGLFAPDKQPK 86 (92)
Q Consensus 76 wGlf~~d~~~k 86 (92)
|||++.++-+|
T Consensus 340 fGLlt~~gI~K 350 (486)
T PF01229_consen 340 FGLLTKLGIPK 350 (486)
T ss_dssp S-SEECCCEE-
T ss_pred hhhhhccCCCc
Confidence 99999887555
No 23
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=47.31 E-value=36 Score=30.06 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCCCCC-----------CCCC-
Q 039046 5 ARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDENDKQ-----------GVEI- 72 (92)
Q Consensus 5 ~~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~~k~-----------~~~~- 72 (92)
+++|++++|.+- +.|+ ++.+.+.|+.-+.+ .|. -+--|+-+.+|..-.. +++.
T Consensus 504 ~~kP~i~~Ey~h-amgn-----~~g~~~~yw~~~~~-----~p~----l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g 568 (1021)
T PRK10340 504 HPKPRILCEYAH-AMGN-----GPGGLTEYQNVFYK-----HDC----IQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYG 568 (1021)
T ss_pred CCCcEEEEchHh-ccCC-----CCCCHHHHHHHHHh-----CCc----eeEEeeeecCcccccccCCCCCEEEEECCCCC
Confidence 479999999994 3333 22234666653322 132 3558888888853321 1111
Q ss_pred -----CCce--EeecCCCCeeee
Q 039046 73 -----ERHW--GLFAPDKQPKYQ 88 (92)
Q Consensus 73 -----E~~w--Glf~~d~~~ky~ 88 (92)
.... ||.++|++||-.
T Consensus 569 ~~p~~~~f~~~Glv~~dr~p~p~ 591 (1021)
T PRK10340 569 DYPNNYNFCIDGLIYPDQTPGPG 591 (1021)
T ss_pred CCCCCcCcccceeECCCCCCChh
Confidence 1223 999999998853
No 24
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.05 E-value=82 Score=22.65 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=21.9
Q ss_pred CCCCceEEEeeeccCCCCCC----CCCCCHHHHHHHHHHHHHHH
Q 039046 3 VGARWIFVISESEWLAAGGD----RLLMNVDNARTYNNNLIQHV 42 (92)
Q Consensus 3 ~~~~~~vvItEtGWPs~G~~----~~~as~~na~~y~~~~~~~~ 42 (92)
+++..+|+. -|||.|.. ....+...++..+..++..+
T Consensus 46 ~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L 86 (233)
T PF05990_consen 46 GFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDL 86 (233)
T ss_pred CCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 566655555 49999983 11234444455556666665
No 25
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=44.69 E-value=90 Score=22.11 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=24.4
Q ss_pred CCCCCceEEEee-eccCCCCCC--CCCCCHHHHHHHHHHHHHHH-hcC
Q 039046 2 HVGARWIFVISE-SEWLAAGGD--RLLMNVDNARTYNNNLIQHV-KEG 45 (92)
Q Consensus 2 ~~~~~~~vvItE-tGWPs~G~~--~~~as~~na~~y~~~~~~~~-~~g 45 (92)
.++|++||++.| ...|.. .. ....+.+..+...+..++.+ ++|
T Consensus 89 ~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~~g 135 (178)
T PF14606_consen 89 EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRKEG 135 (178)
T ss_dssp TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999 455544 42 22466666777777777777 444
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=44.38 E-value=27 Score=26.42 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=43.3
Q ss_pred CceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEEeeecCC-CCCCCCCCCceEeecCCCC
Q 039046 6 RWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVKEGSPKKPGKPIETFIFAIFDEN-DKQGVEIERHWGLFAPDKQ 84 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~~gtp~~~~~~~~~y~F~~fDe~-~k~~~~~E~~wGlf~~d~~ 84 (92)
+++|.|||.-=.+..........+.++.+++.++..+.+- | +.....+.+.-+.|.. |.+... -.+=+||+.|.+
T Consensus 233 Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~-~--~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~ 308 (320)
T PF00331_consen 233 GLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSH-P--PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQ 308 (320)
T ss_dssp TSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHT-T--HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSB
T ss_pred CCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhC-C--ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcC
Confidence 4899999985444433211244667888999999987321 1 0113345555556633 554311 223469999999
Q ss_pred eee
Q 039046 85 PKY 87 (92)
Q Consensus 85 ~ky 87 (92)
||-
T Consensus 309 ~Kp 311 (320)
T PF00331_consen 309 PKP 311 (320)
T ss_dssp B-H
T ss_pred CCH
Confidence 985
No 27
>PF14903 WG_beta_rep: WG containing repeat
Probab=42.92 E-value=23 Score=17.28 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=11.9
Q ss_pred eEeecCCCCeeeeecc
Q 039046 76 WGLFAPDKQPKYQVNF 91 (92)
Q Consensus 76 wGlf~~d~~~ky~l~~ 91 (92)
||+.+.+++...+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 7888888887766543
No 28
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=40.88 E-value=81 Score=21.34 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=30.6
Q ss_pred CCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHh
Q 039046 5 ARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHVK 43 (92)
Q Consensus 5 ~~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~~ 43 (92)
|+++|+++=-||-.........+.++.++|.+++++.+.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~ 101 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLK 101 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 688999998888766543334778888999999999883
No 29
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=35.65 E-value=78 Score=23.54 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=30.6
Q ss_pred CCCceEEEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHHh
Q 039046 4 GARWIFVISESEWLAAGG--DRLLMNVDNARTYNNNLIQHVK 43 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~--~~~~as~~na~~y~~~~~~~~~ 43 (92)
.|+++|+|+=-||..... .....+.++.++|.++++..++
T Consensus 64 ~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~ 105 (299)
T cd02879 64 NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVAR 105 (299)
T ss_pred CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHH
Confidence 578999999778876433 2445788888999999999883
No 30
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=34.35 E-value=26 Score=23.41 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=9.6
Q ss_pred CCCCceEEEee
Q 039046 3 VGARWIFVISE 13 (92)
Q Consensus 3 ~~~~~~vvItE 13 (92)
.+|++||+|||
T Consensus 7 ~~p~~pi~ItE 17 (130)
T PF12965_consen 7 DDPNIPIWITE 17 (130)
T ss_pred cCCCccEEEEe
Confidence 57899999998
No 31
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=32.68 E-value=27 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=8.7
Q ss_pred ceEEEeeeccC
Q 039046 7 WIFVISESEWL 17 (92)
Q Consensus 7 ~~vvItEtGWP 17 (92)
-|.-|+|+||=
T Consensus 41 pPFevte~GWG 51 (84)
T PF03366_consen 41 PPFEVTETGWG 51 (84)
T ss_dssp TTEEEEEEESS
T ss_pred CCCEEEEeEec
Confidence 36789999993
No 32
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=31.95 E-value=1.1e+02 Score=22.80 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=31.2
Q ss_pred CCCceEEEeeeccCCCCCC-CCCCCHHHHHHHHHHHHHHHh
Q 039046 4 GARWIFVISESEWLAAGGD-RLLMNVDNARTYNNNLIQHVK 43 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~~-~~~as~~na~~y~~~~~~~~~ 43 (92)
+|+++|+|+=-||-..... ....+.++.++|.++++..++
T Consensus 82 ~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~ 122 (322)
T cd06548 82 NPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIR 122 (322)
T ss_pred CCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHH
Confidence 5789999998899754332 345778888999999999983
No 33
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=28.84 E-value=58 Score=17.07 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 039046 28 VDNARTYNNNLIQH 41 (92)
Q Consensus 28 ~~na~~y~~~~~~~ 41 (92)
..||..|.+++++.
T Consensus 17 e~NAe~FV~~fVQK 30 (33)
T TIGR03687 17 ESNAEEFVRGFVQK 30 (33)
T ss_pred HHhHHHHHHHHHHc
Confidence 36899999998874
No 34
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=28.41 E-value=25 Score=27.12 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=11.6
Q ss_pred CCceEEEeeeccCCCCCC
Q 039046 5 ARWIFVISESEWLAAGGD 22 (92)
Q Consensus 5 ~~~~vvItEtGWPs~G~~ 22 (92)
|+++++|+|||=...|+.
T Consensus 284 p~~~~WlGEtg~Ay~gG~ 301 (319)
T PF03662_consen 284 PGKPVWLGETGSAYNGGA 301 (319)
T ss_dssp H---EEEEEEEEESTT--
T ss_pred CCCCeEEeCcccccCCCC
Confidence 578999999998887773
No 35
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.78 E-value=1.5e+02 Score=21.28 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=26.5
Q ss_pred CCceEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 039046 5 ARWIFVISESEWLAAGGDRLLMNVDNARTYNNNLIQHV 42 (92)
Q Consensus 5 ~~~~vvItEtGWPs~G~~~~~as~~na~~y~~~~~~~~ 42 (92)
++++|+++=.||-........++.+++++|.+++++.+
T Consensus 58 ~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~ 95 (253)
T cd06545 58 HNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYV 95 (253)
T ss_pred CCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 57888887556643322234567888888999998887
No 36
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=27.75 E-value=37 Score=26.20 Aligned_cols=37 Identities=11% Similarity=-0.141 Sum_probs=25.5
Q ss_pred CceEEEeeeccCCCCC--CCC-----------------CCC--HHHHHHHHHHHHHHH
Q 039046 6 RWIFVISESEWLAAGG--DRL-----------------LMN--VDNARTYNNNLIQHV 42 (92)
Q Consensus 6 ~~~vvItEtGWPs~G~--~~~-----------------~as--~~na~~y~~~~~~~~ 42 (92)
.|||+.||.|.|+--. +.+ ... ---|++|++.++.+.
T Consensus 206 sKpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w 263 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYW 263 (299)
T ss_pred CcceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 6999999999998644 210 111 223688888888876
No 37
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.79 E-value=51 Score=24.71 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=16.3
Q ss_pred CCCCceEEEeeec--cCCCCC
Q 039046 3 VGARWIFVISESE--WLAAGG 21 (92)
Q Consensus 3 ~~~~~~vvItEtG--WPs~G~ 21 (92)
.||+++||+++.| +|..-.
T Consensus 189 ~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 189 KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred HCCCCcEEEEecCCCCchhHH
Confidence 4899999999999 887655
No 38
>PF15123 DUF4562: Domain of unknown function (DUF4562)
Probab=23.78 E-value=28 Score=23.32 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=10.3
Q ss_pred ceEEEeeeccCCC
Q 039046 7 WIFVISESEWLAA 19 (92)
Q Consensus 7 ~~vvItEtGWPs~ 19 (92)
+...|+|+||=-.
T Consensus 52 K~~~vGEIGWgip 64 (116)
T PF15123_consen 52 KHEYVGEIGWGIP 64 (116)
T ss_pred hcccccccccccC
Confidence 5678999999544
No 39
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.49 E-value=10 Score=24.10 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=12.5
Q ss_pred CCCceEEEeeeccCCC
Q 039046 4 GARWIFVISESEWLAA 19 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~ 19 (92)
-+++|-+++-||||-.
T Consensus 22 ~~nVP~lm~~TGwPRR 37 (95)
T COG4519 22 TANVPELMAATGWPRR 37 (95)
T ss_pred cCChHHHHHHcCCchh
Confidence 4677888889999954
No 40
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=22.93 E-value=56 Score=25.46 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEeeeccCCCCCCC-CCC-CHHHHHHHHHHHHHHH
Q 039046 8 IFVISESEWLAAGGDR-LLM-NVDNARTYNNNLIQHV 42 (92)
Q Consensus 8 ~vvItEtGWPs~G~~~-~~a-s~~na~~y~~~~~~~~ 42 (92)
.|++-|.|||+.|-.. ..| -.+++-.|+..=+.++
T Consensus 290 ~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rv 326 (359)
T KOG0524|consen 290 RLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRV 326 (359)
T ss_pred eEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhh
Confidence 6788899999998731 111 1234555555555555
No 41
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=22.30 E-value=1.6e+02 Score=22.14 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCCceEEEeeeccCCCCC-C-CCCCCHHHHHHHHHHHHHHHh
Q 039046 4 GARWIFVISESEWLAAGG-D-RLLMNVDNARTYNNNLIQHVK 43 (92)
Q Consensus 4 ~~~~~vvItEtGWPs~G~-~-~~~as~~na~~y~~~~~~~~~ 43 (92)
+|+++|+|+=-||..... . ....+.++.++|.++++..++
T Consensus 68 ~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~ 109 (362)
T cd02872 68 NPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLR 109 (362)
T ss_pred CCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHH
Confidence 578999998667875433 1 334677888899999999883
No 42
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=21.72 E-value=34 Score=22.94 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=8.2
Q ss_pred eeeccCCCCC
Q 039046 12 SESEWLAAGG 21 (92)
Q Consensus 12 tEtGWPs~G~ 21 (92)
+-+||||--.
T Consensus 52 Sg~GWPSF~~ 61 (119)
T PRK05508 52 SGCGWPSFDD 61 (119)
T ss_pred CCCCCcccCc
Confidence 5689999976
Done!