Query 039048
Match_columns 482
No_of_seqs 245 out of 985
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3.4E-97 7E-102 830.7 46.4 462 1-482 69-800 (900)
2 KOG1041 Translation initiation 100.0 2.6E-86 5.7E-91 737.2 40.9 454 1-482 82-775 (876)
3 KOG1042 Germ-line stem cell di 100.0 1.3E-66 2.7E-71 533.4 21.6 408 1-482 117-770 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 8.9E-64 1.9E-68 523.6 24.3 226 238-482 139-366 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 9.6E-57 2.1E-61 474.3 23.7 218 237-482 170-390 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 1.1E-55 2.4E-60 458.5 23.8 217 238-482 115-335 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.8E-54 3.9E-59 435.0 20.7 221 238-482 17-241 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 3.8E-33 8.1E-38 291.2 19.6 200 237-481 134-336 (404)
9 PF08699 DUF1785: Domain of un 99.8 2.1E-21 4.6E-26 142.0 3.2 52 125-177 1-52 (52)
10 cd02825 PAZ PAZ domain, named 97.1 0.00098 2.1E-08 57.3 6.2 60 177-236 1-62 (115)
11 COG1431 Argonaute homolog, imp 96.8 0.012 2.7E-07 62.3 11.4 157 238-443 424-585 (685)
12 cd02846 PAZ_argonaute_like PAZ 96.0 0.019 4.1E-07 49.1 6.5 58 178-235 2-61 (114)
13 PF02170 PAZ: PAZ domain; Int 95.2 0.013 2.9E-07 51.6 2.7 59 178-237 1-59 (135)
14 PF08459 UvrC_HhH_N: UvrC Heli 91.1 1.6 3.5E-05 39.5 9.0 106 298-437 10-120 (155)
15 cd02845 PAZ_piwi_like PAZ doma 89.6 1 2.2E-05 38.8 6.2 54 178-236 2-55 (117)
16 TIGR00194 uvrC excinuclease AB 82.9 12 0.00026 41.2 11.5 108 300-442 382-498 (574)
17 PRK14672 uvrC excinuclease ABC 78.5 22 0.00047 39.8 11.6 110 297-441 452-565 (691)
18 PRK00558 uvrC excinuclease ABC 68.6 66 0.0014 35.7 12.5 98 298-432 382-485 (598)
19 PRK14667 uvrC excinuclease ABC 68.0 52 0.0011 36.3 11.3 107 298-441 360-471 (567)
20 PRK14666 uvrC excinuclease ABC 64.5 74 0.0016 35.8 11.7 101 297-432 470-571 (694)
21 PRK12306 uvrC excinuclease ABC 63.7 89 0.0019 34.1 12.0 106 298-440 365-475 (519)
22 PRK14670 uvrC excinuclease ABC 63.1 1E+02 0.0023 34.0 12.5 111 298-440 357-472 (574)
23 PRK14669 uvrC excinuclease ABC 60.0 1.1E+02 0.0023 34.2 12.1 107 298-440 395-506 (624)
24 cd06559 Endonuclease_V Endonuc 58.5 72 0.0016 30.3 9.1 79 297-394 23-104 (208)
25 PRK14671 uvrC excinuclease ABC 54.5 1.3E+02 0.0027 33.7 11.5 106 298-441 414-525 (621)
26 PF09373 PMBR: Pseudomurein-bi 46.0 23 0.0005 23.1 2.5 18 371-388 15-32 (33)
27 COG0322 UvrC Nuclease subunit 42.0 2.3E+02 0.005 31.3 11.0 107 298-441 378-487 (581)
28 cd02844 PAZ_CAF_like PAZ domai 37.1 32 0.0007 30.3 2.9 29 203-234 27-55 (135)
29 PRK14668 uvrC excinuclease ABC 34.1 3.5E+02 0.0076 30.0 10.9 104 298-440 374-484 (577)
30 KOG1959 Glycosyl hydrolase, fa 33.2 43 0.00093 38.1 3.6 62 88-162 303-373 (996)
31 cd01457 vWA_ORF176_type VWA OR 22.0 5.6E+02 0.012 23.5 8.7 66 363-433 82-152 (199)
32 PF11019 DUF2608: Protein of u 21.8 1.7E+02 0.0038 28.5 5.3 37 371-417 165-201 (252)
33 PRK13716 leader peptide RepL; 21.3 20 0.00043 21.5 -0.8 9 470-478 5-13 (26)
34 PF06462 Hyd_WA: Propeller; I 20.9 62 0.0013 20.9 1.3 12 386-397 10-21 (32)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.4e-97 Score=830.74 Aligned_cols=462 Identities=42% Similarity=0.666 Sum_probs=390.6
Q ss_pred CeecCC----CCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCCcceEEEEcCCCCC------------
Q 039048 1 VSITPE----VTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDP------------ 64 (482)
Q Consensus 1 V~I~p~----~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~~~~~~V~~~~~~~------------ 64 (482)
|+|+|+ ..+++++|+|++++++++.. .+.+..+||||+++|||+.+||+++.++.|+++++++
T Consensus 69 V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (900)
T PLN03202 69 VSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGN 147 (900)
T ss_pred EEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCccceEECccCCCCCceEEEEeccccccccccccccccc
Confidence 578863 34577889999999987653 4655679999999999999999877788898875311
Q ss_pred CCCCCC------CCCCCceEEEEEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCCCC-ccccccccccCCCC
Q 039048 65 RPSSST------RPRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEK-HTVVGRSFFSTDLG 137 (482)
Q Consensus 65 ~~~~~~------~~~~~~~f~V~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps~~-~~~vgrsFF~~~~~ 137 (482)
+++.++ ...+.+.|+|+|++++++++++|.+||.|.....+.++|||||||||+.|+.. ++.+||+||.++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~ 227 (900)
T PLN03202 148 GSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPK 227 (900)
T ss_pred CCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCc
Confidence 111000 01246889999999999999999999999977788999999999999999865 88999999986644
Q ss_pred CcccCCCceeeeeeeeeeeeecccceeeeeecceeeeeccccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEee
Q 039048 138 PMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHM 217 (482)
Q Consensus 138 ~~~~lg~Gle~wrG~fqSvRp~~~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~ 217 (482)
...+||+|+|+|+|||+||||++++|+|||||+|++||++++|+++|.++.+. ......++.+++++|+|++|.++|.
T Consensus 228 ~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lkGl~V~t~~~ 305 (900)
T PLN03202 228 NFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNV--RDPFQIDWSKAKRMLKNLRVKVSPS 305 (900)
T ss_pred ccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCc--CCccchhHHHHHHHhcCCEEEEecC
Confidence 55689999999999999999999999999999999999999999999987532 1111235678999999999999996
Q ss_pred cCceeeEEecccCCccc-------------------chh-----------------------------------------
Q 039048 218 EYNKSYKITGISSQPMS-------------------QLI----------------------------------------- 237 (482)
Q Consensus 218 ~~~r~ykI~gl~~~~~~-------------------~~~----------------------------------------- 237 (482)
+ +.|+|.+|+..++. +++
T Consensus 306 ~--k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~ 383 (900)
T PLN03202 306 N--QEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLV 383 (900)
T ss_pred C--ceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEcc
Confidence 3 67899888642221 000
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 384 ~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~ 463 (900)
T PLN03202 384 SLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFF 463 (900)
T ss_pred CCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 464 p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l 543 (900)
T PLN03202 464 PRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQI 543 (900)
T ss_pred CCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHH
Confidence
Q ss_pred --------------------------hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccC
Q 039048 238 --------------------------IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKR 291 (482)
Q Consensus 238 --------------------------iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~ 291 (482)
||++||+++||+||||... +.++||++||+||||+||||+||.+..+....
T Consensus 544 ~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~ 620 (900)
T PLN03202 544 QSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPS 620 (900)
T ss_pred HHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeeccccccc
Confidence 9999999999999999664 35789999999999999999999886543345
Q ss_pred CCCcCCCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHH
Q 039048 292 IPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRE 371 (482)
Q Consensus 292 ~p~~~~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~ 371 (482)
+|++.+.+|||||+||+||+||....|||||||||+|++.+++|++.+++|.+++|+|++|.....+ ..+++|+++
T Consensus 621 i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~ 696 (900)
T PLN03202 621 IPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRE 696 (900)
T ss_pred CccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHH
Confidence 7887778999999999999998655799999999999778999999999999999999987321111 124889999
Q ss_pred HHHHHHHHc-CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCC
Q 039048 372 LLIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTD 450 (482)
Q Consensus 372 ~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~ 450 (482)
+|+.|++.+ +.+|++|||||||||||||++|+++|+++|++||++++++|+|+||||||+||||+|||+.+
T Consensus 697 ~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~-------- 768 (900)
T PLN03202 697 LLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG-------- 768 (900)
T ss_pred HHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------
Confidence 999999876 59999999999999999999999999999999999998899999999999999999999863
Q ss_pred CCCCCCCCeEEcCcccCCCcccEEEeeCcccC
Q 039048 451 RSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ 482 (482)
Q Consensus 451 ~~~N~~pGTvVD~~vt~p~~~dFyL~Sh~~lq 482 (482)
+.+||+||||||++||+|.+||||||||.++|
T Consensus 769 ~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q 800 (900)
T PLN03202 769 SPDNVPPGTVVDNKICHPRNNDFYMCAHAGMI 800 (900)
T ss_pred CCCCCCCceEeccccccCCcceEEEecccccc
Confidence 35899999999999999999999999999997
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-86 Score=737.21 Aligned_cols=454 Identities=44% Similarity=0.684 Sum_probs=389.8
Q ss_pred CeecCCCCChHHHH-HHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCC--CcceEEEEcCCCCCCCCCCCCCCCCce
Q 039048 1 VSITPEVTSKKINR-QIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPF--ESKEFIIKLPDSDPRPSSSTRPRKERQ 77 (482)
Q Consensus 1 V~I~p~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~--~~~~~~V~~~~~~~~~~~~~~~~~~~~ 77 (482)
|.|.++..+++.++ .+++.+........|....++|||+++|||..+||. .+..|.+..+.+. ..
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~~~~---------~~--- 149 (876)
T KOG1041|consen 82 VGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKTLYTKLELPEGVVTLDFDVISPKEW---------KK--- 149 (876)
T ss_pred eeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCceeEeccccccccceEEEEecCCCCC---------cc---
Confidence 45677766666664 566655555443446666778999999999888884 3334555553321 11
Q ss_pred EEEEEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCCCC-ccccccccccCCCCCcccCCCceeeeeeeeeee
Q 039048 78 FRVVIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEK-HTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSL 156 (482)
Q Consensus 78 f~V~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps~~-~~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSv 156 (482)
|.+.|++.+.+.+..+..++.+.....+.+++|+||+++|+.|+.+ +..+|++||.....+...+|+|.|+|+|||||+
T Consensus 150 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~ 229 (876)
T KOG1041|consen 150 FKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSI 229 (876)
T ss_pred eEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeee
Confidence 9999999999999999999999888889999999999999999987 999999999863333445999999999999999
Q ss_pred eecccceeeeeecceeeeeccccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcccch
Q 039048 157 RPTQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQL 236 (482)
Q Consensus 157 Rp~~~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~~~ 236 (482)
|+++|+++||+|+++++||++.+|+++++++..-..+.....+...+++.|+||+|+++|+...|.|+|.+++..++.++
T Consensus 230 r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~ 309 (876)
T KOG1041|consen 230 RPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNT 309 (876)
T ss_pred eeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCc
Confidence 99999999999999999999999999999985432223332222348999999999999966678999999988776544
Q ss_pred h-------------------------------------------------------------------------------
Q 039048 237 I------------------------------------------------------------------------------- 237 (482)
Q Consensus 237 ~------------------------------------------------------------------------------- 237 (482)
+
T Consensus 310 ~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~ 389 (876)
T KOG1041|consen 310 TFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPD 389 (876)
T ss_pred eeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHH
Confidence 2
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 390 ~R~~~i~~~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv 469 (876)
T KOG1041|consen 390 QRQKLIKKVLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVV 469 (876)
T ss_pred HHHHHHHHHHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEE
Confidence
Q ss_pred ---------------------------------------------------------------------------hhhhh
Q 039048 238 ---------------------------------------------------------------------------IKRVC 242 (482)
Q Consensus 238 ---------------------------------------------------------------------------iK~~~ 242 (482)
+|+++
T Consensus 470 ~f~~~~~~~~~~f~~~L~~~c~~~Gm~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~k~~~vy~~lK~~e 549 (876)
T KOG1041|consen 470 NFSNSETLRQKQFVDELIKICKDKGMEIKRPRKWAPTEESLEDMITEKSSMEKAAAGVQLVFIILPEKNPDVHDELKYIE 549 (876)
T ss_pred EecccccccHHHHHHHHHHHHHHcCcccccccccCcccchhHHHHHHHHhhhccCCCceEEEEEECCCCcchhHHHHHHH
Confidence 99999
Q ss_pred hhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCC--CCcE
Q 039048 243 ETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS--SPSI 320 (482)
Q Consensus 243 ~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~--~pSi 320 (482)
+...|++|||++.+++.|..+||++||++|||+||||+|+.+..+.....| ....||||||+||+||+++... .|||
T Consensus 550 ~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSi 628 (876)
T KOG1041|consen 550 ETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSI 628 (876)
T ss_pred HHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccE
Confidence 999999999999999999899999999999999999999988765222233 4568999999999999998755 5999
Q ss_pred EEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCCCchhHH
Q 039048 321 AAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQFS 400 (482)
Q Consensus 321 aavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~ 400 (482)
||||+|+|| +.++|.+.+++|.+++|+|+++ .+|+.++|..|++.++.+|++|||||||||||||.
T Consensus 629 agvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~-------------~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~ 694 (876)
T KOG1041|consen 629 VGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL-------------GEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFS 694 (876)
T ss_pred EEEEecccc-cchhhcceEEEecCChhhhcch-------------HHHHHHHHHHHHHhccCCCceEEEEecCCccchHH
Confidence 999999996 9999999999999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEEeeCcc
Q 039048 401 QVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLNSHAG 480 (482)
Q Consensus 401 ~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL~Sh~~ 480 (482)
+|+++|+.+|++||..+.++|.|+||||||+||||||||+.+.++ +..++.+|+||||+||+.||||.++|||||||+|
T Consensus 695 ~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~-~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g 773 (876)
T KOG1041|consen 695 MVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSK-DGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHG 773 (876)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCC-CccCCccCCCCCCEecccccCCCcceEEEeccCc
Confidence 999999999999999999999999999999999999999988752 2356789999999999999999999999999999
Q ss_pred cC
Q 039048 481 IQ 482 (482)
Q Consensus 481 lq 482 (482)
+|
T Consensus 774 ~q 775 (876)
T KOG1041|consen 774 LQ 775 (876)
T ss_pred cc
Confidence 97
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-66 Score=533.45 Aligned_cols=408 Identities=26% Similarity=0.409 Sum_probs=340.8
Q ss_pred CeecCCCCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEE
Q 039048 1 VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRV 80 (482)
Q Consensus 1 V~I~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~~~~~~V~~~~~~~~~~~~~~~~~~~~f~V 80 (482)
|+..|+..++++++.++. .|. ...| .-.||||- +||...++..+- .+-... +.....+++
T Consensus 117 Vef~P~ves~rlR~~~L~----~h~-~lig-~~~~FDG~-iLfl~~k~eq~~---tel~~k----------s~~ge~i~I 176 (845)
T KOG1042|consen 117 VEFEPDVESRRLREALLY----NHT-DLIG-KGYAFDGT-ILFLKEKFEQKQ---TELVSK----------SRDGELIKI 176 (845)
T ss_pred EeeccccccHHHHHHHHH----HhH-hhhc-cceeecce-eehhhHHHhhhh---heeecc----------cCCCceEEE
Confidence 678899888887665543 332 2334 45699998 899999886421 111111 145568999
Q ss_pred EEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCC-CCccccccccccCCCCCcccC-CCceeeeeeeeeeeee
Q 039048 81 VIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPS-EKHTVVGRSFFSTDLGPMGQL-GDGVEYWRGYFQSLRP 158 (482)
Q Consensus 81 ~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps-~~~~~vgrsFF~~~~~~~~~l-g~Gle~wrG~fqSvRp 158 (482)
+|++++++..+ .+++||++|+|||.... .+...+|||||.++. +.++ .--+++|.||-.|||-
T Consensus 177 ~ik~~~~~~~t-------------~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~--~i~ip~~km~lwPGy~tSIrq 241 (845)
T KOG1042|consen 177 TIKLTNELPST-------------DPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRA--KIEIPEFKMSLWPGYETSIRQ 241 (845)
T ss_pred EEEEeccccCC-------------ChhHHHHHHHHHHHHHhhccHHHhhhccCCCCc--ccccccccceecCcchhHHHH
Confidence 99999988643 47899999999998765 678999999998873 3444 4468999999999999
Q ss_pred cccceeeeeecceeeeeccccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCccc--ch
Q 039048 159 TQMGLSLNIDVSARSFYEPILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMS--QL 236 (482)
Q Consensus 159 ~~~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~--~~ 236 (482)
-+..++|++|++|+++.. .++.++|..+..++ +....++++.+-|+-|-+.| +++.|+|..+....+. ..
T Consensus 242 ~E~~illctei~hKvmR~-ETvy~~m~~~~~~~-----~~~qe~~~~~~~glivLT~Y--NNktyriddvD~~~tP~stF 313 (845)
T KOG1042|consen 242 HENDILLCTEISHKVMRT-ETVYDIMRSCQHNT-----QRFQETVNKNVIGLIVLTRY--NNKTYRIDDVDFSQTPLSTF 313 (845)
T ss_pred hhhceeeehhhhhhHhhh-hHHHHHHHHHhhCH-----HHHHHHHHHHhcceEEEEec--CCceeeeeccccCcCcccee
Confidence 999999999999999985 58999999986543 22557889999999999988 6677888877553211 00
Q ss_pred -------h------------------------------------------------------------------------
Q 039048 237 -------I------------------------------------------------------------------------ 237 (482)
Q Consensus 237 -------~------------------------------------------------------------------------ 237 (482)
+
T Consensus 314 ~k~dgeIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TGLtd~mr~dF~~Mkama~hTRlsP 393 (845)
T KOG1042|consen 314 KKDDGEISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTGLTDEMRSDFQLMKAMAEHTRLSP 393 (845)
T ss_pred eecCceeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeeehhhhhccCCcHHHHhhHHHHHHHHHHhcCCH
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 394 ~qR~~rlr~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~ 473 (845)
T KOG1042|consen 394 QQRQDRLRRLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLD 473 (845)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCc
Confidence
Q ss_pred -----------------------------------------------------------------------------hhh
Q 039048 238 -----------------------------------------------------------------------------IKR 240 (482)
Q Consensus 238 -----------------------------------------------------------------------------iK~ 240 (482)
||+
T Consensus 474 ~W~vi~p~r~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK 553 (845)
T KOG1042|consen 474 NWAVIYPGRNNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKK 553 (845)
T ss_pred ceEEEecCccHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHh
Confidence 999
Q ss_pred hhhhccCcceeeeccccccccc--HHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCCCC
Q 039048 241 VCETELGIVSQCCQPRQASRLN--MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSP 318 (482)
Q Consensus 241 ~~~~~~gi~tQci~~~~~~k~~--~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~p 318 (482)
+++++..||||||..+++.+.. ..+..+|++|||+||||..|.++ +|+ +.+||||+||+|.+. .+..
T Consensus 554 ~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~--~k~r 622 (845)
T KOG1042|consen 554 YLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPT--LKGR 622 (845)
T ss_pred heeccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCcc--ccCc
Confidence 9999999999999999997543 56778999999999999999986 665 689999999999864 3468
Q ss_pred cEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCCCchh
Q 039048 319 SIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSEGQ 398 (482)
Q Consensus 319 SiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq 398 (482)
|++|+||||| ..+++|+|.+..|...+|+.+.| +-+|..||++|++.|..+|++||+||||||+||
T Consensus 623 svga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQ 688 (845)
T KOG1042|consen 623 SVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-------------KVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQ 688 (845)
T ss_pred eEEEEEEeec-cchhhhhhheecccCHHHHHHHH-------------HHHHHHHHHHHHHhcccCCceEEEEecCCCCcc
Confidence 9999999999 99999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----HHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEE
Q 039048 399 FSQVLLHEMN----AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFY 474 (482)
Q Consensus 399 ~~~v~~~E~~----~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFy 474 (482)
+.++.++|++ ++.+.++++..+++|+++||||+||.++|||....+ ..+||+||||||++||.|.+||||
T Consensus 689 Lk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~------~~~NP~PGTVVD~~iT~pEryDFy 762 (845)
T KOG1042|consen 689 LKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSS------NAQNPPPGTVVDDTITRPERYDFY 762 (845)
T ss_pred cceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCc------cccCCCCCceecceecccceeeeE
Confidence 9999999999 777777777777999999999999999999997642 679999999999999999999999
Q ss_pred EeeCcccC
Q 039048 475 LNSHAGIQ 482 (482)
Q Consensus 475 L~Sh~~lq 482 (482)
|+||+.-|
T Consensus 763 LvsQ~Vrq 770 (845)
T KOG1042|consen 763 LVSQAVRQ 770 (845)
T ss_pred eehhhhhc
Confidence 99998654
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=8.9e-64 Score=523.57 Aligned_cols=226 Identities=58% Similarity=0.945 Sum_probs=209.6
Q ss_pred hhhhhhhccCcceeeeccccccc-ccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCC-C
Q 039048 238 IKRVCETELGIVSQCCQPRQASR-LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE-D 315 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k-~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~-~ 315 (482)
||++||.+.||+||||..+++.| .++||+.||++|||+||||+||.++.. ..+++...+|||||+||+||++++ .
T Consensus 139 iK~~~~~~~gI~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~ 215 (426)
T cd04657 139 IKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPA 215 (426)
T ss_pred HHHHHhhcCCcccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCC
Confidence 99999999999999999999976 789999999999999999999999764 223445689999999999999875 4
Q ss_pred CCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCCC
Q 039048 316 SSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVS 395 (482)
Q Consensus 316 ~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGVs 395 (482)
..||+||+|||+| .++++|.+.+++|..++|++++| ++|++++|+.|++.||.+|++|||||||||
T Consensus 216 ~~pSiaa~Vas~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvs 281 (426)
T cd04657 216 GAPSIAAVVASVD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVS 281 (426)
T ss_pred CCCcEEEEEEecC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcC
Confidence 5799999999999 99999999999999999999998 999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEE
Q 039048 396 EGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYL 475 (482)
Q Consensus 396 egq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL 475 (482)
||||++|+++|+++|++||.+++++|+|+||||||+||||+|||+.+.+++ ..+.+||+||||||++||+|..|||||
T Consensus 282 egq~~~v~~~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~N~~pGTvVd~~it~p~~~dFyL 359 (426)
T cd04657 282 EGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNGNVPPGTVVDRGITHPREFDFYL 359 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCCCCCCCeEEecccCCCCceeEEE
Confidence 999999999999999999999988899999999999999999999776431 124799999999999999999999999
Q ss_pred eeCcccC
Q 039048 476 NSHAGIQ 482 (482)
Q Consensus 476 ~Sh~~lq 482 (482)
+||.++|
T Consensus 360 ~sh~~~q 366 (426)
T cd04657 360 CSHAGIQ 366 (426)
T ss_pred eccccCc
Confidence 9999987
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=9.6e-57 Score=474.27 Aligned_cols=218 Identities=33% Similarity=0.488 Sum_probs=201.6
Q ss_pred hhhhhhhhccCcceeeecccccccc--cHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCC
Q 039048 237 IIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE 314 (482)
Q Consensus 237 ~iK~~~~~~~gi~tQci~~~~~~k~--~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~ 314 (482)
.||++|+.+.||+||||..+++.+. ..+++.||++|||+||||+||.+... .....+|||||+||+||+++
T Consensus 170 ~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~~~tmiiGidv~h~~~~- 242 (448)
T cd04658 170 AIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFILKNTMIVGIDVYHDTIT- 242 (448)
T ss_pred HHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCCCCeEEEEEeeecCCCC-
Confidence 3999999999999999999999764 57899999999999999999998653 12357899999999999874
Q ss_pred CCCCcEEEEEEeecCCCcceeeeEEEeccCcchh-hhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcC
Q 039048 315 DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEI-IQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDG 393 (482)
Q Consensus 315 ~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~-i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDG 393 (482)
..||+||+|||+| +++++|++.+..|..++|+ +++| ++|++++|+.|++.+|.+|++|||||||
T Consensus 243 -~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l~~y~~~~~~~P~~IiiyRdG 307 (448)
T cd04658 243 -KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKALKAYKKENKKLPSRIIIYRDG 307 (448)
T ss_pred -CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecC
Confidence 4699999999999 9999999999999999998 8888 9999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccE
Q 039048 394 VSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDF 473 (482)
Q Consensus 394 Vsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dF 473 (482)
||||||++|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+. +..+||+||||||++||+|..+||
T Consensus 308 vsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~------~~~~N~~~GTvVd~~it~p~~~dF 381 (448)
T cd04658 308 VGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGG------NNFSNPPPGTVVDSEITKPEWYDF 381 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCC------CCCCCCCCCcEecccccCCCcccE
Confidence 99999999999999999999999888899999999999999999999764 245899999999999999999999
Q ss_pred EEeeCcccC
Q 039048 474 YLNSHAGIQ 482 (482)
Q Consensus 474 yL~Sh~~lq 482 (482)
||+||.++|
T Consensus 382 yL~s~~~~q 390 (448)
T cd04658 382 FLVSQSVRQ 390 (448)
T ss_pred EEeccccCc
Confidence 999999886
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.1e-55 Score=458.48 Aligned_cols=217 Identities=39% Similarity=0.590 Sum_probs=195.4
Q ss_pred hhhhhhhccCcceeeeccccccc--ccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCC-C
Q 039048 238 IKRVCETELGIVSQCCQPRQASR--LNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPG-E 314 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k--~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~-~ 314 (482)
||++|+.. ||+||||..+++.+ ..++|++||++|||+||||+||.++.+ .+...+|||||+||+||+++ .
T Consensus 115 iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~ 187 (393)
T cd02826 115 IKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTV 187 (393)
T ss_pred HHHHHhcc-CCceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCC
Confidence 99999988 99999999999976 678999999999999999999999753 12347899999999999886 3
Q ss_pred CCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCC-CCceEEEEEcC
Q 039048 315 DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDG 393 (482)
Q Consensus 315 ~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~P~~IiiyRDG 393 (482)
...||++|+|||+| .. +.|.+.++.|..++|++++| ++|++++|+.|+++++. +|++|||||||
T Consensus 188 ~~~~si~~~vas~~-~~-~~~g~~~~~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDG 252 (393)
T cd02826 188 NGGPSAVGFAANLS-NH-TFLGGFLYVQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDG 252 (393)
T ss_pred CCCCcEEEEEeecC-Cc-cccceEEEEecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecC
Confidence 45799999999999 65 34445577888889999888 99999999999999999 99999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccE
Q 039048 394 VSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDF 473 (482)
Q Consensus 394 Vsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dF 473 (482)
||||||+.|+++|+++|++||. +..+|+|+||||+|+||||+|||+.++++ ..+||+||||||++||+|..+||
T Consensus 253 vsegq~~~v~~~e~~~i~~a~~-~~~~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dF 326 (393)
T cd02826 253 VSEGEFKRVKEEVEEIIKEACE-IEESYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEF 326 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceE
Confidence 9999999999999999999999 77789999999999999999999976532 35899999999999999999999
Q ss_pred EEeeCcccC
Q 039048 474 YLNSHAGIQ 482 (482)
Q Consensus 474 yL~Sh~~lq 482 (482)
||+||.++|
T Consensus 327 yL~sh~~~q 335 (393)
T cd02826 327 YLASHVARQ 335 (393)
T ss_pred EEeccccCc
Confidence 999999987
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.8e-54 Score=435.04 Aligned_cols=221 Identities=47% Similarity=0.737 Sum_probs=198.4
Q ss_pred hhhhhhhccCcceeeecccccccc--cHHHHHHHHHHhhccCCccc-eeeccccccCCCCcCCCCeEEEEEEeecCCCCC
Q 039048 238 IKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRN-TVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE 314 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~--~~~~~~ni~~KiN~KlGG~n-~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~ 314 (482)
+|++++.++||+|||+..+++.+. ..+++.||++|||+||||.| |.++.. ...++ .+|||||+||+|++++.
T Consensus 17 iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~---~~~miIGidv~h~~~~~ 91 (302)
T PF02171_consen 17 IKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL---KNTMIIGIDVSHPSPGS 91 (302)
T ss_dssp HHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---SEEEEEEEEEEEESSTC
T ss_pred HHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---CceEEEEEEEEecCccc
Confidence 999999999999999999999876 57999999999999999996 544432 11112 68999999999999876
Q ss_pred CCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCC-CCceEEEEEcC
Q 039048 315 DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDG 393 (482)
Q Consensus 315 ~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~P~~IiiyRDG 393 (482)
...||++|+|+|+| ++.++|.+.+..|..++|++++| +++++++|+.|++.|+. +|++|||||||
T Consensus 92 ~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l-------------~~~~~~~L~~~~~~~~~~~P~~IiiyRdG 157 (302)
T PF02171_consen 92 DKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNL-------------EEIIKEALKEFKKNNGKWLPERIIIYRDG 157 (302)
T ss_dssp TCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHH-------------HHHHHHHHHHHHHTTTT-TTSEEEEEEES
T ss_pred CCcceeeEEEEecc-CccccccceeEEeccchhhhcch-------------hhHHHHHHHHHHHHcCCCCCceEEEEEcc
Confidence 56799999999999 99999999999999999999998 99999999999999997 99999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccE
Q 039048 394 VSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDF 473 (482)
Q Consensus 394 Vsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dF 473 (482)
||||||..|+++|+++|++||+++..+|+|+|+||+|+||||+|||+.+.+ +...||+||||||+.+|+|..+||
T Consensus 158 vse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~-----~~~~N~~~Gtvvd~~i~~~~~~~f 232 (302)
T PF02171_consen 158 VSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGR-----DGLQNPPPGTVVDTGITSPNYFEF 232 (302)
T ss_dssp --GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSE-----ETTTEECTTEEESSEEEECSBEEE
T ss_pred cCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccc-----cccCCCCCCeeeccceeeecceee
Confidence 999999999999999999999999999999999999999999999998764 257899999999999999999999
Q ss_pred EEeeCcccC
Q 039048 474 YLNSHAGIQ 482 (482)
Q Consensus 474 yL~Sh~~lq 482 (482)
||+||.++|
T Consensus 233 ~l~s~~~~~ 241 (302)
T PF02171_consen 233 YLVSHTARQ 241 (302)
T ss_dssp EEETSCCCS
T ss_pred eeeeccccc
Confidence 999999876
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.8e-33 Score=291.16 Aligned_cols=200 Identities=23% Similarity=0.229 Sum_probs=153.5
Q ss_pred hhhhhhhhccCcceeeecccccccc--cHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCC
Q 039048 237 IIKRVCETELGIVSQCCQPRQASRL--NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGE 314 (482)
Q Consensus 237 ~iK~~~~~~~gi~tQci~~~~~~k~--~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~ 314 (482)
.||++| .+.||+||||..+++.+. ..+++.||++|||+|+||+||.|... ...+|||||+||+|+.++.
T Consensus 134 ~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~ 204 (404)
T cd04659 134 RLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGE 204 (404)
T ss_pred HHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCC
Confidence 399987 589999999999999754 67899999999999999999998642 2368999999999998652
Q ss_pred CCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCC-CCceEEEEEcC
Q 039048 315 DSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDG 393 (482)
Q Consensus 315 ~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~P~~IiiyRDG 393 (482)
...+++|+ ..| .+... .+..+...++.+.+- +...+.++++++|+.|++.++. +|++|||||||
T Consensus 205 ~~~~~~a~---vf~-~~g~g---~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg 269 (404)
T cd04659 205 VRVTGCAQ---VFD-SDGLG---LILRGAPIEEPTEDR--------SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDG 269 (404)
T ss_pred EEEEEEEE---EEc-CCCCE---EEEecCccCCccccc--------CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCC
Confidence 22234443 334 33211 122222233322210 0011389999999999999998 99999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccE
Q 039048 394 VSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDF 473 (482)
Q Consensus 394 Vsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dF 473 (482)
+. .++|+++|++||.++. |+++||+|+|+||+|||+.+..+ ...||++||+||.+ .+||
T Consensus 270 ~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~-----~~~np~~GT~v~~~-----~~~~ 328 (404)
T cd04659 270 RF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYP-----NGFPPRRGTYVKLS-----DDEG 328 (404)
T ss_pred CC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCC-----CCCCCCCceEEEeC-----CCeE
Confidence 94 7999999999999884 99999999999999999965431 12899999999954 5999
Q ss_pred EEeeCccc
Q 039048 474 YLNSHAGI 481 (482)
Q Consensus 474 yL~Sh~~l 481 (482)
||++|.++
T Consensus 329 ~L~s~g~~ 336 (404)
T cd04659 329 LLWTHGSV 336 (404)
T ss_pred EEEecCCc
Confidence 99999875
No 9
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.83 E-value=2.1e-21 Score=141.99 Aligned_cols=52 Identities=63% Similarity=1.115 Sum_probs=42.5
Q ss_pred cccccccccCCCCCcccCCCceeeeeeeeeeeeecccceeeeeecceeeeecc
Q 039048 125 TVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP 177 (482)
Q Consensus 125 ~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSvRp~~~~l~LNvDvs~~aF~~~ 177 (482)
+.+|||||+++.+. .+||+|+|+|||||||+||++++|+||||||+++||+|
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 36899999977433 79999999999999999999999999999999999986
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=97.15 E-value=0.00098 Score=57.32 Aligned_cols=60 Identities=28% Similarity=0.344 Sum_probs=48.9
Q ss_pred cccHHHHHHHHhhc--cCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcccch
Q 039048 177 PILATEFVQYYCRD--LSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQL 236 (482)
Q Consensus 177 ~~~l~~~~~~~~~~--~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~~~ 236 (482)
.++|+|+++++++. ..+++.+.++.++.++|+|++|.++|++.++.|+|.+++..++...
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~ 62 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ 62 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh
Confidence 37899999999642 2345666788899999999999999986678999999998877654
No 11
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.012 Score=62.30 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=94.9
Q ss_pred hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCCC
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSS 317 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~ 317 (482)
+|+ .+.=|++|.+.-.+.+|.-.-++.|++.|+-+|-+|+++.+.+. .-| -+-|+|+||+.-.-| .
T Consensus 424 lKr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~---~gp-----vDaivGlDvsr~~~g---n 489 (685)
T COG1431 424 LKR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG---LGP-----VDAIVGLDVSRVSEG---N 489 (685)
T ss_pred HHh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc---CCC-----ccceeeeeeeEEeeC---C
Confidence 666 34569999999998887667889999999999999999987543 112 357999999987643 2
Q ss_pred CcEEEEEEeecCC--CcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHH--HHcC-CCCceEEEEEc
Q 039048 318 PSIAAVVASMDWP--EVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFR--RSTN-FKPHRIIFYRD 392 (482)
Q Consensus 318 pSiaavvaS~d~~--~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~--~~~~-~~P~~IiiyRD 392 (482)
..+-|++...| + ...+|+-.... .. ++......+-+. .+.+ ..-.+|++.||
T Consensus 490 ~tV~gct~~f~-seg~l~eyy~t~tp------a~----------------GErl~~~g~yle~~~~~gfe~~n~iV~lRD 546 (685)
T COG1431 490 WTVEGCTSCFV-SEGGLEEYYHTVTP------AL----------------GERLETSGRYLEKMNWRGFESRNLIVTLRD 546 (685)
T ss_pred eEEeeeeEEEe-ccCceEEeeecccC------Cc----------------cchhhhHHHHHHHHHhhhhhccCeeEEEec
Confidence 34444333333 2 22333322211 11 222211111111 1123 44567999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCC
Q 039048 393 GVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADH 443 (482)
Q Consensus 393 GVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~ 443 (482)
| .+...|++++++-=+++ ...++++.+-|... +||..+.
T Consensus 547 G-------~l~~~E~aavkeyg~el----gsn~ev~~i~knNp-~vf~~e~ 585 (685)
T COG1431 547 G-------KLVAGEIAAVKEYGGEL----GSNPEVNRILKNNP-WVFAIEG 585 (685)
T ss_pred C-------ccchHHHHHHHHHhhhc----CCChhhheecccCC-eEEEecc
Confidence 9 67778887776655554 24455555555544 4887554
No 12
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=96.01 E-value=0.019 Score=49.06 Aligned_cols=58 Identities=45% Similarity=0.560 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhhcc-CCCCCHHHHHHHHHHhcCcEEEEEeec-CceeeEEecccCCcccc
Q 039048 178 ILATEFVQYYCRDL-SRPLSDQVRLKVKKALKGIKVVLTHME-YNKSYKITGISSQPMSQ 235 (482)
Q Consensus 178 ~~l~~~~~~~~~~~-~~~~~~~~~~~l~k~LkglkV~~~h~~-~~r~ykI~gl~~~~~~~ 235 (482)
++|++++.++++.. ...+.+.++.+++++|+|++|.++|.+ ..|.|+|.|++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~ 61 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQ 61 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccc
Confidence 68999999996432 123556788899999999999999975 35689999999887643
No 13
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=95.25 E-value=0.013 Score=51.65 Aligned_cols=59 Identities=29% Similarity=0.361 Sum_probs=43.6
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcccchh
Q 039048 178 ILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLI 237 (482)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~~~~ 237 (482)
++|+|++.++.....+ ........+++.|+|++|.++|.+..+.|+|.++....+....
T Consensus 1 ~~vld~~~~~~~~~~~-~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~ 59 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQR-NNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPEST 59 (135)
T ss_dssp HHHHHHHHHHCTCSSH-HHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSE
T ss_pred CcHHHHHHHHHhhhcc-cchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCccee
Confidence 4789999998543111 1122344589999999999999877789999999987775553
No 14
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=91.09 E-value=1.6 Score=39.50 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|.-|-++|+||-.. .-.|+++|.-.| ....+ .+-...+.. .+-.+|+ .+|.|.|..+
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~-G~~~k~~YR~f~i~~--~~~~dDy--------------~~M~Evl~RR 68 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFEN-GKPDKSEYRRFNIKT--VDGGDDY--------------AAMREVLTRR 68 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHHH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEEC-CccChhhCceEecCC--CCCCcHH--------------HHHHHHHHHH
Confidence 467899999999753 346888888666 33221 122233321 1112443 4667777666
Q ss_pred HHH----cCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEeccccee
Q 039048 377 RRS----TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTR 437 (482)
Q Consensus 377 ~~~----~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~R 437 (482)
++. ...+|+-|+| || +.||+. +.++++++++ ...++.=++=.+.|.++
T Consensus 69 ~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lg--l~i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 69 FKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELG--LNIPVIGLAKNDEHKTG 120 (155)
T ss_dssp HCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT------EEEEESSSSE---
T ss_pred HhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcC--CCeEEEEEEeccccccc
Confidence 543 2368997775 88 667665 4567777763 33444444444456666
No 15
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=89.61 E-value=1 Score=38.78 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcccch
Q 039048 178 ILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQL 236 (482)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~~~ 236 (482)
.+++|++.++.+... ....+.++++.|+|+.|.++| +++.|+|.+|+...+...
T Consensus 2 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~V~t~y--n~k~Y~I~~I~~~~~p~s 55 (117)
T cd02845 2 TTVLDRMHKLYRQET---DERFREECEKELIGSIVLTRY--NNKTYRIDDIDFDKTPLS 55 (117)
T ss_pred eeHHHHHHHHHHhcc---cHHHHHHHHHHcCCCEEEEee--CCeEEEEeEecCCCCccc
Confidence 357788888754311 124678899999999999999 468899999997766444
No 16
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=82.94 E-value=12 Score=41.24 Aligned_cols=108 Identities=26% Similarity=0.279 Sum_probs=63.0
Q ss_pred eEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce--eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHH
Q 039048 300 TIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK--YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFR 377 (482)
Q Consensus 300 tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~--y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~ 377 (482)
.-|-++|+||=.. .-.|+++|.-.| ..+.+ |. ...+.. .+-.+|. .+|.|.|...+
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~RR~ 439 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFED-GKPLKASYR-RYNINS--ITGGDDY--------------AAMREVLRRRY 439 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHHH
Confidence 7899999999753 347888888777 43322 22 122211 1112444 45566665444
Q ss_pred HH--c--C-CCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEec--ccceeeccCC
Q 039048 378 RS--T--N-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK--RHHTRLFPAD 442 (482)
Q Consensus 378 ~~--~--~-~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K--rh~~Rff~~~ 442 (482)
+. . . .+|+-|+| || +-||+.. ..+++++++ ....+.+|-..| ||.+++|..+
T Consensus 440 ~r~~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg--~~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 440 SSIQKKNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLG--VVNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCCcEEEEEecCCCceEEEeCC
Confidence 33 1 1 48986665 77 6777764 446666663 211355666666 7778888644
No 17
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=78.49 E-value=22 Score=39.79 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=64.9
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHH
Q 039048 297 DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA 375 (482)
Q Consensus 297 ~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 375 (482)
..|..|-++|+||=.. .-.||++|.-.| ....+ .+-...+... ..-++|+ .+|.|.|..
T Consensus 452 ~~p~rIE~fDiSh~~G----~~~VasmVvf~~-G~p~k~~YR~f~ik~~-~~~~DD~--------------asM~Evl~R 511 (691)
T PRK14672 452 RIPTLIEGFDISHLGG----KYTVASLICFKN-GAPDTKNYRLFNLRAH-DTRIDDF--------------ASMREAIAR 511 (691)
T ss_pred CCCCeEEEEECCccCC----cCceEEEEEEEC-CccChhhCCeeeccCC-CCCCchH--------------HHHHHHHHH
Confidence 3578999999999753 357888888777 43322 1112222211 0113454 456676665
Q ss_pred HHHHc---CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccC
Q 039048 376 FRRST---NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 441 (482)
Q Consensus 376 ~~~~~---~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 441 (482)
.+... ..+|+-||| || +-||+. +.+++++++. . .|.+|-..||.-.-|+|.
T Consensus 512 R~~r~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elg--l--~i~vigLaKr~e~i~~~~ 565 (691)
T PRK14672 512 RYTHTPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALG--L--SIPLVGLAKRAEELFIPN 565 (691)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcC--C--CCcEEEEEecccEEEeCC
Confidence 55432 258987765 77 567665 4456666663 2 466888888765544453
No 18
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=68.58 E-value=66 Score=35.75 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcc--eeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA 375 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 375 (482)
.|.-|-++|+||=.. .-.|+|+|.-.| ..+. .|. ...+.. .+-.+|. .+|+|.|..
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~R 439 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYR-RYNIKG--VTGGDDY--------------AAMREVLTR 439 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHH
Confidence 577899999999653 357888888777 4332 222 122221 1112443 466666655
Q ss_pred HHHH----cCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEec
Q 039048 376 FRRS----TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 432 (482)
Q Consensus 376 ~~~~----~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K 432 (482)
.+.. .+.+|+-||| || +-||+.. ..+++++++ . .+.+|-..|
T Consensus 440 R~~~~~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg--~--~i~v~glaK 485 (598)
T PRK00558 440 RYSRLLKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELG--L--DIPVVGLAK 485 (598)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCC--C--CCcEEEEEe
Confidence 5443 2358987765 77 6777764 446666663 2 255665555
No 19
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=67.99 E-value=52 Score=36.27 Aligned_cols=107 Identities=22% Similarity=0.250 Sum_probs=63.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|..|-++|+||=.. .-.|+++|.-.| ....+ .+-...+.. .+-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR~f~i~~--~~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYG----EFTVGSCVVWED-GSMNKKEYRRYKIKT--VDGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCC----CcceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 577899999999653 347888888777 43322 111222221 1113454 4666666555
Q ss_pred HHHc----CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccC
Q 039048 377 RRST----NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 441 (482)
Q Consensus 377 ~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 441 (482)
+... +.+|+-|+| || +-||+.. ..+++++++ . .|.+|-..|+. .++|..
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg--~--~i~v~glaK~~-e~i~~~ 471 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLSV--------GIEVRDRLG--L--NIKVFSLAKKE-EILYTE 471 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEecC-cEEEcC
Confidence 5431 248987665 77 6677754 456666663 2 46677777866 556643
No 20
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=64.46 E-value=74 Score=35.81 Aligned_cols=101 Identities=18% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHH
Q 039048 297 DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA 375 (482)
Q Consensus 297 ~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 375 (482)
..|..|-++|+||-+. .-.++|+|.-.| ....+ .+-...+... + .+|+ .+|.|.+..
T Consensus 470 ~~p~rIE~~DiSh~~G----~~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~R 527 (694)
T PRK14666 470 GPPHRIEAVDVSHTGG----RNTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGR 527 (694)
T ss_pred CCCCEEEEEECcccCC----cCceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHH
Confidence 3577899999999753 346788888777 43332 1111222211 1 1454 455666655
Q ss_pred HHHHcCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEec
Q 039048 376 FRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 432 (482)
Q Consensus 376 ~~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K 432 (482)
.++....+|+-|+| || +-||+.. ..++++++. ....+.+|-..|
T Consensus 528 R~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~e~g--~~~~~~v~~laK 571 (694)
T PRK14666 528 RVESGPPWPDLLLV--DG-GRGQLAA--------VVRALEEAG--MGGLFAVASIAK 571 (694)
T ss_pred HhcCCCCCCCEEEE--cC-CHHHHHH--------HHHHHHHcC--CCCCccEEEEec
Confidence 55432358987665 77 6677764 456666663 222366777777
No 21
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=63.69 E-value=89 Score=34.06 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|.-|-++|+||=.. .-.|+|+|.-.| ....+ .+-...+.. .+-.+|+ .+|.|.|...
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 466799999999653 347888888777 43322 111222221 1112444 4566666555
Q ss_pred HHHc----CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRST----NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
+... +.+|+-||| || +-||+.. ..+++++++ . .+.+|-..|+. .++|.
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg--~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLG--L--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEcCc-eEEEe
Confidence 4331 248986665 77 6677764 446666663 2 47788888876 44554
No 22
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=63.05 E-value=1e+02 Score=33.98 Aligned_cols=111 Identities=21% Similarity=0.250 Sum_probs=63.3
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|..|-++|+||=.. .-.|+|+|.-.| ....+ .+-...+........+|. .+|.|.|...
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 467899999999753 347888888777 43322 111222221100002443 4566666555
Q ss_pred HHHc----CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRST----NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
++.- +.+|+-|+| || +-||+.. ..+++++++ ....|.+|-..|+.-+=|+|
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg--~~~~i~v~gLaK~~e~i~~~ 472 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLNA--------AYSILKGLK--IENKVKVCALAKKEETIFLP 472 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCCCceEEEEecCCeEEEeC
Confidence 4431 258987665 77 6777754 446666663 22237788888876443334
No 23
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=60.03 E-value=1.1e+02 Score=34.23 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|..|-++|+||=.. .-.|+|+|.-.| ....+ .+-...+.. .+-.+|+ .+|+|.|...
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 467899999999653 347888888777 43322 111122211 1113444 4556666554
Q ss_pred HHH---cC-CCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRS---TN-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~---~~-~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
+.. .+ .+|+-||| || +-||+.. ..+++.+++ .. .|.+|-..|+.. ++|.
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elg--l~-~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIG--IT-DQPLASIAKREE-IIYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CC-CCcEEEEecCCe-EEEC
Confidence 433 12 48986665 77 6777764 456676663 21 266777778764 4554
No 24
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=58.53 E-value=72 Score=30.33 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=41.7
Q ss_pred CCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHH---H
Q 039048 297 DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIREL---L 373 (482)
Q Consensus 297 ~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~---L 373 (482)
..+.+|-|+|++|... ..-.+||+|. ++|++..-....++...-....|..+ -.|+|. +
T Consensus 23 ~~~~~I~gvDiS~~~~---~~~~vaa~Vv-~~~~~~~~~~~~~~~~~~~~PYIPG~--------------LafRE~p~l~ 84 (208)
T cd06559 23 GEVRLVAGVDVSYKKD---GDLAVAAAVV-LDYPDLEVVETAVAVGEVTFPYIPGL--------------LAFREGPPLL 84 (208)
T ss_pred CCccEEEEEEeeeccC---CCeEEEEEEE-EECCCCcEEEEEEEEEecCCCCcchh--------------HHHhhHHHHH
Confidence 4578999999999752 2346666554 45555444444443332222233333 123333 3
Q ss_pred HHHHHHcCCCCceEEEEEcCC
Q 039048 374 IAFRRSTNFKPHRIIFYRDGV 394 (482)
Q Consensus 374 ~~~~~~~~~~P~~IiiyRDGV 394 (482)
+.|.+- ...|+-|+|=-.|+
T Consensus 85 ~~~~~l-~~~PDlilVDG~G~ 104 (208)
T cd06559 85 EALEKL-KTKPDLLLVDGHGI 104 (208)
T ss_pred HHHHhC-CCCCCEEEEeCCcc
Confidence 334332 36899777744443
No 25
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=54.49 E-value=1.3e+02 Score=33.72 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=62.8
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcc--eeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIA 375 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 375 (482)
.|.-|-++|+||=.. .-.|+++|.-.| .... .|. ...+... +-.+|. .+|.|.|..
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~ik~~--~~~dDy--------------~~m~Evl~R 471 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVD-GKPKKSDYR-KFKLRSF--EGSDDY--------------AAMREVVTR 471 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 467899999999753 347888888777 4332 222 1222211 113444 456666655
Q ss_pred HHHHc----CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccC
Q 039048 376 FRRST----NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 441 (482)
Q Consensus 376 ~~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 441 (482)
.+..- +.+|+-|+| || +-||+.. ..+++++++ . .+.+|-..||. .++|..
T Consensus 472 R~~r~~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg--~--~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 472 RYSGSLAEELPLPDLIVI--DG-GKGQVNS--------AWKVLQELG--L--SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEecc-cEEEeC
Confidence 55331 258987765 77 6777754 456666663 2 46678778854 556543
No 26
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=46.05 E-value=23 Score=23.11 Aligned_cols=18 Identities=17% Similarity=0.157 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCCceEE
Q 039048 371 ELLIAFRRSTNFKPHRII 388 (482)
Q Consensus 371 ~~L~~~~~~~~~~P~~Ii 388 (482)
.....|++.||++|..|-
T Consensus 15 ~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 15 SRVNNFYESNGRLPNYVS 32 (33)
T ss_pred HHHHHHHHHcCCCCCeee
Confidence 467899999999999874
No 27
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=41.98 E-value=2.3e+02 Score=31.35 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=60.2
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHH-HH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELL-IA 375 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L-~~ 375 (482)
.|.-|-+.|+||-.. .-.++++|...| ....+ .+-...+. -+-.+|. . +|.|.| +.
T Consensus 378 ~p~rIE~~D~Sh~~g----~~~V~smvvf~~-g~~~k~~YRry~i~---~~~~dDy-------------a-~m~evl~RR 435 (581)
T COG0322 378 APYRIECFDISHIQG----EDTVGSMVVFED-GGPSKKDYRRYNIK---ITGGDDY-------------A-SMREVLTRR 435 (581)
T ss_pred CceeEEEeecCcccc----ccceeEEEEEcC-CCCChhhccccccc---CCCCchH-------------H-HHHHHHHHH
Confidence 478899999999863 346777777666 33222 11111111 1113343 3 444444 45
Q ss_pred HHHHcC-CCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccC
Q 039048 376 FRRSTN-FKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPA 441 (482)
Q Consensus 376 ~~~~~~-~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 441 (482)
|.+.-. .+|+-|+| || +-||+.. .++++++++ .... +|-+.|+-.+-|++.
T Consensus 436 ~~~~~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l~--~~~~--viglaK~~~~~~~~~ 487 (581)
T COG0322 436 YSRLLKEELPDLILI--DG-GKGQLNA--------AKEVLKELG--LDIP--VIGLAKGEEELLLPG 487 (581)
T ss_pred hhhccccCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--CCcc--EEEEEecCceeEecC
Confidence 554433 89965554 77 5677754 456676663 3333 888888887555553
No 28
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=37.11 E-value=32 Score=30.34 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=23.3
Q ss_pred HHHHhcCcEEEEEeecCceeeEEecccCCccc
Q 039048 203 VKKALKGIKVVLTHMEYNKSYKITGISSQPMS 234 (482)
Q Consensus 203 l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~ 234 (482)
..+.|+|+.|.++|. .+.|+|.++. ..+.
T Consensus 27 ~~~~l~g~~V~t~hn--~r~Y~I~~i~-~~~p 55 (135)
T cd02844 27 CACDLKGSVVTAPHN--GRFYVISGIL-DLNA 55 (135)
T ss_pred cHHHhcCCEEEEcCC--CcEEEEEEEc-CCCc
Confidence 457799999999994 6789999998 5443
No 29
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=34.13 E-value=3.5e+02 Score=29.99 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=60.5
Q ss_pred CCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcce-eeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 298 RPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTK-YRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 298 ~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~-y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
.|.-|-++|+||=.. .-.|+++|.-.| ....+ .+-...+.. -.+|+ .+|.|.|...
T Consensus 374 ~p~rIE~fDiSh~~G----~~~V~s~Vvf~~-G~~~k~~YR~f~i~~----~~dD~--------------~~m~Evl~RR 430 (577)
T PRK14668 374 RPERIEGFDVSHAQG----RAVVGSNVCFVD-GSAETADYRRKKLTE----RNDDY--------------ANMRELVRWR 430 (577)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEEC-CccCHHHcCeecCCC----CCChH--------------HHHHHHHHHH
Confidence 567899999999653 347888888777 43322 111222322 13454 3555555444
Q ss_pred HHHc------CCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRST------NFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~~------~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
++.- +.+|+-|+| || +-||+.. ..++++++. . .+.+|-..|+. .++|-
T Consensus 431 ~~r~~~~~~~~~~PDLili--DG-G~gQl~a--------a~~~l~elg--~--~i~v~glaK~~-e~i~~ 484 (577)
T PRK14668 431 AERAVEGRDDRPDPDLLLI--DG-GDGQLGA--------ARDALAETG--W--DVPAIALAKAE-ELVVT 484 (577)
T ss_pred HHhhhccccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcC--C--CCcEEEEEcCC-eEEEc
Confidence 4331 258987765 77 5677654 456677763 2 46677777765 34553
No 30
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=33.21 E-value=43 Score=38.12 Aligned_cols=62 Identities=24% Similarity=0.500 Sum_probs=40.7
Q ss_pred CChHHHHHHHcccCCC---------CchhHHHHHHHHhccCCCCCccccccccccCCCCCcccCCCceeeeeeeeeeeee
Q 039048 88 PDLYTLQQFLRRRHFE---------VPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRP 158 (482)
Q Consensus 88 i~l~~L~~~l~~~~~~---------~~~~~iq~Ldiilr~~ps~~~~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSvRp 158 (482)
-+|+.|.+|.+...+. .|...+.+|.-..-.+|.+. .-||+-..+ --..|.|||.| ||
T Consensus 303 knmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp~Kt-----~DFFPYa~~-------~~syWTGyFTS-RP 369 (996)
T KOG1959|consen 303 KNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWPVKT-----DDFFPYASE-------PHSYWTGYFTS-RP 369 (996)
T ss_pred hhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCcccccc-----cccCcCCCC-------CCcceeeeccc-cH
Confidence 4688899999844222 35567777777665555431 228875421 23799999988 89
Q ss_pred cccc
Q 039048 159 TQMG 162 (482)
Q Consensus 159 ~~~~ 162 (482)
+..|
T Consensus 370 a~Kr 373 (996)
T KOG1959|consen 370 ALKR 373 (996)
T ss_pred HHHH
Confidence 8764
No 31
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=22.03 E-value=5.6e+02 Score=23.51 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=42.1
Q ss_pred cchhhHHHHHHHHHHHH---cCCC--CceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecc
Q 039048 363 LVHGGMIRELLIAFRRS---TNFK--PHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR 433 (482)
Q Consensus 363 ~~~~~~~~~~L~~~~~~---~~~~--P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Kr 433 (482)
+.+...+..+++.|... +... +..||+.=||...+.-. -...|.+|.+++.....-.|.+|.|...
T Consensus 82 T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~-----~~~~i~~a~~~l~~~~~i~i~~v~vG~~ 152 (199)
T cd01457 82 TNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDA-----VERVIIKASDELDADNELAISFLQIGRD 152 (199)
T ss_pred CcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHH-----HHHHHHHHHHhhccccCceEEEEEeCCc
Confidence 44577778787777653 1234 48999999999865221 1245667777765444466777777653
No 32
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=21.76 E-value=1.7e+02 Score=28.52 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhh
Q 039048 371 ELLIAFRRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASL 417 (482)
Q Consensus 371 ~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~ 417 (482)
++|..|-...+..|++|||-=|. .+.+..+.+||+..
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~----------~~nl~sv~~a~k~~ 201 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDN----------KENLKSVEKACKKS 201 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCC----------HHHHHHHHHHHhhC
Confidence 55667777789999999998775 67788999999974
No 33
>PRK13716 leader peptide RepL; Provisional
Probab=21.35 E-value=20 Score=21.53 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=6.5
Q ss_pred cccEEEeeC
Q 039048 470 EFDFYLNSH 478 (482)
Q Consensus 470 ~~dFyL~Sh 478 (482)
..||||||-
T Consensus 5 vqd~flcsl 13 (26)
T PRK13716 5 VQDFFLCSL 13 (26)
T ss_pred hhhhhhhhh
Confidence 358999873
No 34
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=20.89 E-value=62 Score=20.92 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.6
Q ss_pred eEEEEEcCCCch
Q 039048 386 RIIFYRDGVSEG 397 (482)
Q Consensus 386 ~IiiyRDGVseg 397 (482)
.-|+||-|||+.
T Consensus 10 G~v~~R~Gis~~ 21 (32)
T PF06462_consen 10 GSVYFRTGISPS 21 (32)
T ss_pred CCEEEECcCCCC
Confidence 348999999975
Done!