Query 039048
Match_columns 482
No_of_seqs 245 out of 985
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 7E-105 3E-109 891.6 42.1 455 1-482 61-759 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 2E-94 6.9E-99 808.7 28.3 452 10-482 97-943 (1046)
3 2yhb_A QDE-2, post-transcripti 100.0 1.6E-66 5.6E-71 542.0 16.4 225 238-482 97-333 (437)
4 1yvu_A Hypothetical protein AQ 100.0 3.6E-49 1.2E-53 431.3 30.0 190 238-482 442-635 (706)
5 2yha_A Post-transcriptional ge 100.0 3.7E-49 1.3E-53 406.0 17.2 178 238-433 97-286 (388)
6 1u04_A Argonaute, hypothetical 100.0 4.9E-42 1.7E-46 375.2 25.1 183 238-479 492-684 (771)
7 3ho1_A Argonaute; argonaute, p 100.0 7.7E-37 2.6E-41 329.1 17.7 184 238-479 421-606 (685)
8 2w42_A PIWI, putative uncharac 100.0 1.2E-36 4.1E-41 316.9 18.0 199 237-482 124-331 (427)
9 4g0o_A Protein argonaute 5; MI 99.3 1.9E-13 6.5E-18 120.5 2.4 48 237-284 92-139 (139)
10 4g0m_A Protein argonaute 2; MI 99.3 3.5E-13 1.2E-17 120.4 2.4 48 237-284 103-150 (150)
11 4g0x_A Protein argonaute 1; MI 99.3 3.7E-13 1.2E-17 119.9 2.3 47 238-284 101-147 (147)
12 3luc_A Protein argonaute-2; MI 99.2 1.5E-12 5.1E-17 114.7 2.3 44 238-281 95-138 (138)
13 3mj0_A Protein argonaute-2; ar 97.8 1.1E-05 3.7E-10 69.2 3.4 63 176-239 1-71 (124)
14 1vyn_A Argonaute2; nucleic aci 97.7 1.8E-05 6E-10 69.6 4.0 64 175-238 2-72 (143)
15 1r6z_P Chimera of maltose-bind 96.9 0.00037 1.3E-08 73.6 3.4 71 168-238 375-452 (509)
16 2xfm_A MIWI, PIWI-like protein 95.6 0.011 3.8E-07 52.0 4.6 56 177-237 2-57 (150)
17 3o7v_X PIWI-like protein 1; PI 87.0 0.5 1.7E-05 39.9 3.9 51 178-233 2-52 (124)
18 3qir_A PIWI-like protein 2; st 86.8 0.47 1.6E-05 41.4 3.7 51 177-233 2-52 (148)
19 2nrr_A Uvrabc system protein C 83.4 12 0.0004 32.8 11.0 102 299-440 17-120 (159)
20 2nrt_A Uvrabc system protein C 70.6 35 0.0012 31.4 10.9 102 299-440 22-125 (220)
21 3qbz_A DDK kinase regulatory s 64.2 2.5 8.6E-05 36.9 1.6 66 370-435 45-119 (160)
22 3c65_A Uvrabc system protein C 50.0 1E+02 0.0036 28.3 10.1 98 299-433 14-118 (226)
23 3ho1_A Argonaute; argonaute, p 45.8 21 0.00073 38.6 5.4 147 3-187 33-186 (685)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=7.5e-105 Score=891.63 Aligned_cols=455 Identities=48% Similarity=0.774 Sum_probs=396.8
Q ss_pred CeecCCCCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCCcceEEEEcCCCCCCCCCCCCCCCCceEEE
Q 039048 1 VSITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFESKEFIIKLPDSDPRPSSSTRPRKERQFRV 80 (482)
Q Consensus 1 V~I~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~~~~~~V~~~~~~~~~~~~~~~~~~~~f~V 80 (482)
|+|+|+..+++++|+||+++++++....|++..+||||+++|||+++||+++..+++.+...++ +++++|+|
T Consensus 61 V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~--------~~~~~~~V 132 (861)
T 4f3t_A 61 LDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE--------GKDRIFKV 132 (861)
T ss_dssp EEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC---------------CEEE
T ss_pred EEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCCCCcceEEEEecCCC--------CCCcEEEE
Confidence 6899998899999999999999875556887778999999999999999865544444322111 35678999
Q ss_pred EEeecccCChHHHHHHHcccCCCCchhHHHHHHHHhccCCCCCccccccccccCCCCCcccCCCceeeeeeeeeeeeecc
Q 039048 81 VIRLASKPDLYTLQQFLRRRHFEVPYEVIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSLRPTQ 160 (482)
Q Consensus 81 ~I~~~~~i~l~~L~~~l~~~~~~~~~~~iq~Ldiilr~~ps~~~~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSvRp~~ 160 (482)
+|++++++++++|.+||+|.....++++||||||||||.|+.++..+|||||.++.+...+||+|+|+|+||||||||++
T Consensus 133 ~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~ 212 (861)
T 4f3t_A 133 SIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSL 212 (861)
T ss_dssp EEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECS
T ss_pred EEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecC
Confidence 99999999999999999999888889999999999999999899999999998765445789999999999999999999
Q ss_pred cceeeeeecceeeeeccccHHHHHHHHhhc-----cCCCCCHHHHHHHHHHhcCcEEEEEeecC-ceeeEEecccCCccc
Q 039048 161 MGLSLNIDVSARSFYEPILATEFVQYYCRD-----LSRPLSDQVRLKVKKALKGIKVVLTHMEY-NKSYKITGISSQPMS 234 (482)
Q Consensus 161 ~~l~LNvDvs~~aF~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~k~LkglkV~~~h~~~-~r~ykI~gl~~~~~~ 234 (482)
++|+|||||||++||++++|+|+|.++++. ..+++++.++.+++++|+|++|+++|++. .|+|+|.+|+..+++
T Consensus 213 ~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~ 292 (861)
T 4f3t_A 213 WKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPAS 292 (861)
T ss_dssp SSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETT
T ss_pred CccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCC
Confidence 999999999999999999999999998532 13456778899999999999999999754 478999999754432
Q ss_pred c--------------hh---------------------------------------------------------------
Q 039048 235 Q--------------LI--------------------------------------------------------------- 237 (482)
Q Consensus 235 ~--------------~~--------------------------------------------------------------- 237 (482)
. ++
T Consensus 293 ~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~ 372 (861)
T 4f3t_A 293 HQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATAR 372 (861)
T ss_dssp TCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCC
T ss_pred CcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHcc
Confidence 2 11
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 373 ~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~ 452 (861)
T 4f3t_A 373 SAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKV 452 (861)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCC
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccce
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 453 W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~~~~Y~ 532 (861)
T 4f3t_A 453 WAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYA 532 (861)
T ss_dssp EEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSSCTHHH
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCCccHHH
Confidence
Q ss_pred -hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCC
Q 039048 238 -IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS 316 (482)
Q Consensus 238 -iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~ 316 (482)
||++||+++||+||||+.+++.|.++||+.||++|||+||||+||.+.+. ..|.+...+|||||+||+||+|++..
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence 99999999999999999999998899999999999999999999998653 23555568999999999999998767
Q ss_pred CCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCCCc
Q 039048 317 SPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVSE 396 (482)
Q Consensus 317 ~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGVse 396 (482)
.||+||||||+| .++++|.+.+++|.+++|+|++| ++|++++|+.|++.++.+|++||||||||||
T Consensus 610 ~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~IiiyRDGVse 675 (861)
T 4f3t_A 610 KPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSE 675 (861)
T ss_dssp CCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEEEESCCG
T ss_pred CceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEecCCCh
Confidence 899999999999 89999999999999999999999 9999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEEe
Q 039048 397 GQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYLN 476 (482)
Q Consensus 397 gq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL~ 476 (482)
|||++|+++|+++|++||.+++++|+|+||||||+||||+|||+.+.++ ..++.+||+||||||++||||.+|||||+
T Consensus 676 gq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pGTvVD~~it~p~~~dFyL~ 753 (861)
T 4f3t_A 676 GQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAGTTVDTKITHPTEFDFYLC 753 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGG--CBTTTTBCCTTEEECSSSSCSSBCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcc--cccccCCCCCceeccCccccCCCCEEEEE
Confidence 9999999999999999999998899999999999999999999986532 24678999999999999999999999999
Q ss_pred eCcccC
Q 039048 477 SHAGIQ 482 (482)
Q Consensus 477 Sh~~lq 482 (482)
||+++|
T Consensus 754 Sh~~~q 759 (861)
T 4f3t_A 754 SHAGIQ 759 (861)
T ss_dssp CSCCCS
T ss_pred EEeccc
Confidence 999987
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2e-94 Score=808.66 Aligned_cols=452 Identities=25% Similarity=0.356 Sum_probs=364.1
Q ss_pred hHHHHHHHHHHHHH--hhhccCCCCcceeeCCCceeecCCCC---CCcceEEEEcC-----CCCCCCCC--------CCC
Q 039048 10 KKINRQIISQLINL--YRLTNLGGRIPAYDGMKSIYTAGPLP---FESKEFIIKLP-----DSDPRPSS--------STR 71 (482)
Q Consensus 10 k~~~r~i~~~l~~~--~~~~~~~~~~~a~DG~k~l~s~~~Lp---~~~~~~~V~~~-----~~~~~~~~--------~~~ 71 (482)
++.+++|+.+|+++ +. ..|+. .+||||+++|||+.+|| +....+.|.+. ++++++++ ...
T Consensus 97 ~~k~~~ii~~ll~e~~~~-~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1046)
T 4f1n_A 97 KPKKYELIEALLDEDEIL-YKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAPSNKASLQKKIDP 174 (1046)
T ss_dssp HHHHHHHHHHHHHSCTTT-GGGTT-SEEECSSSEEEESSCGGGSTTCTTCCC----------------------------
T ss_pred hhHHHHHHHHHHHhcchh-hhcCC-ceeecCccceEECCcCCccccCCCceEEeccccccccCCcccccccccccccccc
Confidence 55678899998886 22 23554 58999999999999999 44556888877 44432110 001
Q ss_pred CCCCceEEEEEeecccCChHHHHHHHcccCCCCc-----hhHHHHHHHHhccCCCCC---ccccccc-cccCCCC-Cccc
Q 039048 72 PRKERQFRVVIRLASKPDLYTLQQFLRRRHFEVP-----YEVIQVLDVVLRAAPSEK---HTVVGRS-FFSTDLG-PMGQ 141 (482)
Q Consensus 72 ~~~~~~f~V~I~~~~~i~l~~L~~~l~~~~~~~~-----~~~iq~Ldiilr~~ps~~---~~~vgrs-FF~~~~~-~~~~ 141 (482)
..++++|+|+|+++++|++.+|.+||.|.....+ .++|+||++||+|.++.+ +.++|+| ||..+.+ ...+
T Consensus 175 ~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF~~~~~~~~~~ 254 (1046)
T 4f1n_A 175 ELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFFIFNNFAKAIP 254 (1046)
T ss_dssp ---CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEEECSTTCCEEE
T ss_pred cccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccccCCCCCcccc
Confidence 2567889999999999999999999999976532 689999999999998754 3677777 8876532 4679
Q ss_pred CCCceeeeeeeeeeeeecccceeeeeecceeeeecc-----------------ccHHHHHHHHhh--c----------cC
Q 039048 142 LGDGVEYWRGYFQSLRPTQMGLSLNIDVSARSFYEP-----------------ILATEFVQYYCR--D----------LS 192 (482)
Q Consensus 142 lg~Gle~wrG~fqSvRp~~~~l~LNvDvs~~aF~~~-----------------~~l~~~~~~~~~--~----------~~ 192 (482)
||+|+|+||||||||||++|||+|||||||++||++ ++|+|+|.++++ + ..
T Consensus 255 Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~~~~~ 334 (1046)
T 4f1n_A 255 FQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTA 334 (1046)
T ss_dssp CSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCTTTTS
T ss_pred CCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhcccccccccccccccc
Confidence 999999999999999999999999999999999985 799999999854 1 12
Q ss_pred CCCCHHHH-------HHHHHHhcCcEEEEEeec-------------CceeeEEecccCCcccc-----------------
Q 039048 193 RPLSDQVR-------LKVKKALKGIKVVLTHME-------------YNKSYKITGISSQPMSQ----------------- 235 (482)
Q Consensus 193 ~~~~~~~~-------~~l~k~LkglkV~~~h~~-------------~~r~ykI~gl~~~~~~~----------------- 235 (482)
+.++..++ .+++++|+||||+++|++ ..++|+|.||+..++++
T Consensus 335 ~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~ 414 (1046)
T 4f1n_A 335 PPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPK 414 (1046)
T ss_dssp CCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC---------------
T ss_pred CCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCccccccccc
Confidence 33344455 789999999999999964 11246666665433210
Q ss_pred -------hh-----------------------------------------------------------------------
Q 039048 236 -------LI----------------------------------------------------------------------- 237 (482)
Q Consensus 236 -------~~----------------------------------------------------------------------- 237 (482)
.+
T Consensus 415 ~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~~~ylPmElC~I~pGQr~~kKL~~ts~MIKfAa~rP~eR~~~I~~~ 494 (1046)
T 4f1n_A 415 PNEKPININTIDYFKRKYDITLKYPDMKLVNLGGKNDVVPPECLTIVPGQKLKGQIFDTKTYIDFSAIRPTEKFDLISRL 494 (1046)
T ss_dssp --------CHHHHHHHHSCCCCSCTTSCCEECSTTTCEECGGGCCBCTTCBCCSCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcCceEEEHHHHHHHHhCcccCCCCCCEEEECCCCcccccceEEecCCcccccccccHHHHHHHHccCcHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 495 ~~~~~~~~l~~~~~~~l~~FG~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~~~~~~~ 574 (1046)
T 4f1n_A 495 SMPAIKRGLTDSEKEESSAPHNSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQV 574 (1046)
T ss_dssp HHHHHHHHTSCCC--------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTCCCSBCCSSCE
T ss_pred HHHhhhccccccccHhHHhcCCccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCCEEecCCcccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 039048 238 -------------------------------------------------------------------------------- 237 (482)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (482)
T Consensus 575 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 654 (1046)
T 4f1n_A 575 NLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRG 654 (1046)
T ss_dssp EEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC-----------------------
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCcccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---------------------------------------------hhhhhhhccCcceeeecccccccccHHHHHHHHHH
Q 039048 238 ---------------------------------------------IKRVCETELGIVSQCCQPRQASRLNMQYFENVALK 272 (482)
Q Consensus 238 ---------------------------------------------iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~K 272 (482)
||++||+++||+||||+.+++.|.++||++||+||
T Consensus 655 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lK 734 (1046)
T 4f1n_A 655 APSGPPTFETSPGEISLLNLLENIPSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMK 734 (1046)
T ss_dssp -----CCCBCCTTHHHHHHHHHTCCTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHhcCCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEehhhhccccHHHHHHHHHH
Confidence 77889999999999999999999999999999999
Q ss_pred hhccCCccceeeccccccCCCCcC----CCCeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcceeeeEEEeccC-cch
Q 039048 273 INVKVGGRNTVLVDAVQKRIPLVT----DRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAH-HEE 347 (482)
Q Consensus 273 iN~KlGG~n~~~~~~~~~~~p~~~----~~~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~~y~~~~~~q~~-~~e 347 (482)
||+||||+||.|... .++++. ..+|||||+||+|++++. .+||||||||+| .++++|.+.+++|.. ++|
T Consensus 735 iN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d-~~~t~y~s~~~~Q~~~~~E 808 (1046)
T 4f1n_A 735 MNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD-DKFTQFPGDYMLQDGPGEE 808 (1046)
T ss_dssp HHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS-SSCCCCCEEEEEEEEETCC
T ss_pred HHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCCC--CCeeeEEEEEEC-CCcCeEeeEEEEecCCCcc
Confidence 999999999999754 233332 347999999999954332 469999999999 899999999999998 999
Q ss_pred hhhccccccCCCCCCcchhhHHHHHHHHHHHH-cCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhh------CC
Q 039048 348 IIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS-TNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLE------EG 420 (482)
Q Consensus 348 ~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~------~~ 420 (482)
+|++| ++||.++|+.|++. ++.+|++|||||||||||||++|+++|+++|++||.++. .+
T Consensus 809 ii~~L-------------~~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~~~ 875 (1046)
T 4f1n_A 809 IITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNK 875 (1046)
T ss_dssp SCTTG-------------GGGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHTSCC
T ss_pred HHHHH-------------HHHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence 99999 99999999999998 789999999999999999999999999999999999985 47
Q ss_pred CCCCEEEEEEecccceeeccCCCCCCCCC------CCCCCCCCCeEEcCcccCCCcccEEEeeCcccC
Q 039048 421 YAPPVTFVVVQKRHHTRLFPADHNRRDLT------DRSGNILPGTVVDTHICHPTEFDFYLNSHAGIQ 482 (482)
Q Consensus 421 ~~p~it~Ivv~Krh~~Rff~~~~~~~~~~------~~~~N~~pGTvVD~~vt~p~~~dFyL~Sh~~lq 482 (482)
|+|+||||||+||||+||||.+.++.+.. ++.+||+||||||++||||.+||||||||.++|
T Consensus 876 y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~q 943 (1046)
T 4f1n_A 876 YDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALK 943 (1046)
T ss_dssp CCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECSCCCS
T ss_pred CCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCcceEEEEccccCC
Confidence 99999999999999999999754311111 137899999999999999999999999999987
No 3
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.6e-66 Score=541.98 Aligned_cols=225 Identities=34% Similarity=0.611 Sum_probs=165.4
Q ss_pred hhhhhhhccCcceeeecccccccccHH--HHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCC---C
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ---P 312 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~--~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~---~ 312 (482)
||++||+++||+||||..+++.|.++| |++||++|||+||||+||.|+.. +|++.+.+|||||+||+||+ |
T Consensus 97 iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~~~~~~~tmiiG~DV~H~~~~~~ 172 (437)
T 2yhb_A 97 VKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGKTMVVGYDVTHPTNLAA 172 (437)
T ss_dssp HHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CHHHHTTCEEEEEEEECCCSCCCT
T ss_pred HHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCCEEEEEEEEeccccccC
Confidence 999999999999999999999888888 99999999999999999999753 45555679999999999999 7
Q ss_pred C--CCCCCcEEEEEEeecCCCcceeeeEEEecc-CcchhhhccccccCCCCCCcchhhHHHHHHHHHHH---HcCCCCce
Q 039048 313 G--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR---STNFKPHR 386 (482)
Q Consensus 313 ~--~~~~pSiaavvaS~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~---~~~~~P~~ 386 (482)
| ....||+||||||+| +++++|.+.+++|. +++|+|++| ++|++++|+.|++ .++.+|++
T Consensus 173 g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~~~~P~r 238 (437)
T 2yhb_A 173 GQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRLELWRSNPANNRSLPEN 238 (437)
T ss_dssp TCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHHHHHHTCGGGTTCCCSE
T ss_pred CCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HHHHHHHHHHHHhhhhhcCCCCce
Confidence 7 346799999999999 99999999999999 999999999 9999999999999 78999999
Q ss_pred EEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCC-CCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcc
Q 039048 387 IIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHI 465 (482)
Q Consensus 387 IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~-~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~v 465 (482)
|||||||||||||++|+++|+++|++||++++++| +|+||||||+||||+||||.+.++. .++.+||+||||||++|
T Consensus 239 IiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~~~~~N~~pGTvVD~~i 316 (437)
T 2yhb_A 239 ILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--HFKSKSPKEGTVVDRGV 316 (437)
T ss_dssp EEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------------------
T ss_pred EEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc--ccccCCCCCceEecccc
Confidence 99999999999999999999999999999998888 8999999999999999999875431 12789999999999999
Q ss_pred cCCCcccEEEeeCcccC
Q 039048 466 CHPTEFDFYLNSHAGIQ 482 (482)
Q Consensus 466 t~p~~~dFyL~Sh~~lq 482 (482)
|||.+|||||+||.++|
T Consensus 317 t~p~~~dFyL~Sh~~~q 333 (437)
T 2yhb_A 317 TNVRYWDFFLQAHASLQ 333 (437)
T ss_dssp -----------------
T ss_pred cCCCCceEEEEeccccc
Confidence 99999999999999987
No 4
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=3.6e-49 Score=431.31 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=160.3
Q ss_pred hhhhhhhccCcceeeecccccccc-cHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCC
Q 039048 238 IKRVCETELGIVSQCCQPRQASRL-NMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDS 316 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~-~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~ 316 (482)
||++|+ ++||+||||..+++.+. +.|++.||++|||+||||+||.|... ...+|||||+||+||+.+. .
T Consensus 442 IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~ 511 (706)
T 1yvu_A 442 VKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI--------EGKVDAFVGIDISRITRDG-K 511 (706)
T ss_dssp HHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC--------TTCCSEEEEECEEECCCSS-S
T ss_pred HHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeeeccC--------CCCceEEEEEEEeccCCCC-C
Confidence 898866 89999999999998764 68999999999999999999998642 2368999999999997543 3
Q ss_pred CCcEEEEEEeecCCC--cceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCC
Q 039048 317 SPSIAAVVASMDWPE--VTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGV 394 (482)
Q Consensus 317 ~pSiaavvaS~d~~~--~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGV 394 (482)
.||++|+|||+| .. +.+|.+....| .++|++++ ++..+|+.|++.++.+|++||||||||
T Consensus 512 ~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~----------------l~~~~l~~~~~~~~~~P~rIIiyRDGV 573 (706)
T 1yvu_A 512 TVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEK----------------AIGDVFSLLEKLGFKKGSKIVVHRDGR 573 (706)
T ss_dssp CCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHH----------------HHHHHHHHHHHTTCCTTCEEEEEESSC
T ss_pred CceEEEEEEEEc-CCCCEEEEEEEeccc-ccchHHHH----------------HHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 599999999999 55 56777776544 47888755 455667778888889999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEE
Q 039048 395 SEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFY 474 (482)
Q Consensus 395 segq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFy 474 (482)
|| ++|+++|++||++ |.|+||||||+||||+|||+.+ ||+||||||. ..+|||
T Consensus 574 se-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~-----------np~pGTvVD~-----~~~~ff 626 (706)
T 1yvu_A 574 LY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE-----------KFIKGYFYKL-----SEDSVI 626 (706)
T ss_dssp CC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC-----------SCCTTEEEEB-----SSSEEE
T ss_pred Cc-------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECCC-----------CCCCeEEEEc-----CCCeEE
Confidence 99 8999999999987 4699999999999999999842 5999999994 468999
Q ss_pred EeeCcc-cC
Q 039048 475 LNSHAG-IQ 482 (482)
Q Consensus 475 L~Sh~~-lq 482 (482)
|++|++ +|
T Consensus 627 L~ss~~~~q 635 (706)
T 1yvu_A 627 LATYNQVYE 635 (706)
T ss_dssp ECCSCCCST
T ss_pred EEecCCccC
Confidence 998876 54
No 5
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.7e-49 Score=406.03 Aligned_cols=178 Identities=33% Similarity=0.598 Sum_probs=165.6
Q ss_pred hhhhhhhccCcceeeecccccccccHH--HHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCC---C
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQ--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQ---P 312 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~--~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~---~ 312 (482)
||++||+++||+||||..+++.|.++| |++||++|||+||||+||.|... +|++.+.+|||||+||+||+ |
T Consensus 97 iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~~~~~~~tmiiG~DV~H~~~~~~ 172 (388)
T 2yha_A 97 VKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGKTMVVGYDVTHPTNLAA 172 (388)
T ss_dssp HHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CHHHHTSCEEEEEEEEECSCCCSS
T ss_pred HHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCCEEEEEEEEecccccCC
Confidence 999999999999999999999888888 99999999999999999999753 45555679999999999999 8
Q ss_pred C--CCCCCcEEEEEEeecCCCcceeeeEEEecc-CcchhhhccccccCCCCCCcchhhHHHHHHHHHHH---HcCCCCce
Q 039048 313 G--EDSSPSIAAVVASMDWPEVTKYRGLVSAQA-HHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR---STNFKPHR 386 (482)
Q Consensus 313 ~--~~~~pSiaavvaS~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~---~~~~~P~~ 386 (482)
| ....||+||||||+| +++++|.+.+++|. +++|+|++| ++|++++|+.|++ .++.+|++
T Consensus 173 g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~~~~P~r 238 (388)
T 2yha_A 173 GQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRLELWRSNPANNRSLPEN 238 (388)
T ss_dssp SSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHHHHHHHSGGGTTCCCSE
T ss_pred CCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHH-------------HHHHHHHHHHHHHhhhhcCCCCce
Confidence 7 346799999999999 99999999999999 999999999 9999999999999 78999999
Q ss_pred EEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCC-CCCEEEEEEecc
Q 039048 387 IIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKR 433 (482)
Q Consensus 387 IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~-~p~it~Ivv~Kr 433 (482)
|||||||||||||++|+++|+++|++||.+++++| +|+||||||+||
T Consensus 239 IiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr 286 (388)
T 2yha_A 239 ILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG 286 (388)
T ss_dssp EEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC--
T ss_pred EEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc
Confidence 99999999999999999999999999999998887 899999999999
No 6
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=4.9e-42 Score=375.23 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=154.4
Q ss_pred hhhhhhhccCcceeeecccccccc----c-----HHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEee
Q 039048 238 IKRVCETELGIVSQCCQPRQASRL----N-----MQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT 308 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~----~-----~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~ 308 (482)
||++| ++.||+||||..+++.+. . .+++.||++|||+||||.||.|+. |. .+|||||+||+
T Consensus 492 IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~------p~---~~tmiIGiDV~ 561 (771)
T 1u04_A 492 IKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY------RF---NYDYIIGIDVA 561 (771)
T ss_dssp HHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC------CC---SSSEEEEEEEE
T ss_pred HHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeecC------CC---CCEEEEEEEEE
Confidence 89988 799999999999998643 2 788999999999999999999853 22 58999999999
Q ss_pred cCCCCCCCCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHH-cCCCCceE
Q 039048 309 HPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRS-TNFKPHRI 387 (482)
Q Consensus 309 H~~~~~~~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~P~~I 387 (482)
|++++. ..++++|+|+|.| ....+|.+.+..|..+ |.++ + +.|+.++|..|++. ++.+|++|
T Consensus 562 H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~-E~i~-l-------------~~~l~~~L~~y~~~n~~~lP~RI 624 (771)
T 1u04_A 562 PMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRG-ESVD-M-------------NEFFKEMVDKFKEFNIKLDNKKI 624 (771)
T ss_dssp EECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSS-SSCC-H-------------HHHHHHHHHHHHHTTCCCTTCEE
T ss_pred cCCCCC-CceEEEEEEECCC-CCEEEEEEEEeecCCc-cEEc-H-------------HHHHHHHHHHHHHHhCCCCCCEE
Confidence 996553 4688889999998 7888888765545444 4443 6 78999999999998 57899999
Q ss_pred EEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccC
Q 039048 388 IFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICH 467 (482)
Q Consensus 388 iiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~ 467 (482)
||||||+ |+++|+++|++||.++ .|++|||+|+||||+|||. + ++||||||
T Consensus 625 IiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF~-~------------~~pGTVV~----- 675 (771)
T 1u04_A 625 LLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAFA-N------------MKMYFNLG----- 675 (771)
T ss_dssp EEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBSS-C------------SCEEEEET-----
T ss_pred EEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecCceeeec-C------------CCCeeEEe-----
Confidence 9999996 7899999999999875 4899999999999999992 2 25899993
Q ss_pred CCcccEEEeeCc
Q 039048 468 PTEFDFYLNSHA 479 (482)
Q Consensus 468 p~~~dFyL~Sh~ 479 (482)
. ||||+||.
T Consensus 676 --~-DFyL~Sh~ 684 (771)
T 1u04_A 676 --G-AIYLIPHK 684 (771)
T ss_dssp --T-EEEEECSC
T ss_pred --C-CEEEEecc
Confidence 3 99999994
No 7
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=7.7e-37 Score=329.12 Aligned_cols=184 Identities=21% Similarity=0.244 Sum_probs=144.8
Q ss_pred hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCCCC
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSS 317 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~ 317 (482)
||++| .+.||+||||. +++.+...+++.||++|||+||||+||.|+. |. .++||||+||+|++.
T Consensus 421 IKk~~-~~~GIpTQcV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~----- 484 (685)
T 3ho1_A 421 LKALL-LREGLPSQILN-VPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES----- 484 (685)
T ss_dssp HHHHH-HHTTCCEEEEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----
T ss_pred HHHHH-hcCCCccEEEe-cccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----
Confidence 99876 79999999999 7877778899999999999999999999964 32 689999999999862
Q ss_pred CcEEEEEEeecC-CCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCceEEEEEcCC-C
Q 039048 318 PSIAAVVASMDW-PEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGV-S 395 (482)
Q Consensus 318 pSiaavvaS~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~P~~IiiyRDGV-s 395 (482)
.++++++++++- ....+| +.+..|...++.+++| .+|+.++|..|++.++.+|++|||||||| |
T Consensus 485 ~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L-------------~~~l~eaL~~Y~k~ng~lP~RIIIyRDGV~s 550 (685)
T 3ho1_A 485 FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV-------------WDLLEETLWAFRRKAGRLPSRVLLLRNGRVP 550 (685)
T ss_dssp EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH-------------HHHHHHHHHHHHHHHSSCCSEEEEEECSSSC
T ss_pred CccceEEEEEECCCCEEEe-EEEEccCCcEecHHHH-------------HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCC
Confidence 355555555540 334443 3345665544456678 99999999999999999999999999999 8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeeccCCCCCCCCCCCCCCCCCCeEEcCcccCCCcccEEE
Q 039048 396 EGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPADHNRRDLTDRSGNILPGTVVDTHICHPTEFDFYL 475 (482)
Q Consensus 396 egq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~p~~~dFyL 475 (482)
|||++ +|++||+++ .|++|||+|+||||+|||+.+ .+|.+||+|+. .+||||
T Consensus 551 e~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n----------~pp~~Gt~v~~------e~d~fl 602 (685)
T 3ho1_A 551 QDEFA--------LALEALARE----GIAYDLVSVRKSGGGRVYPVQ----------GRLADGLYVPL------EDKTFL 602 (685)
T ss_dssp SGGGH--------HHHHHHHHT----TCEEEEEEEESSCCCCEEESS----------SCCCSSEEEEC------STTEEE
T ss_pred HHHHH--------HHHHHHHhc----CCCEEEEEEEecCCceEecCC----------CCCCCeEEEeC------CCCEEE
Confidence 98765 566888876 378999999999999999963 35777887743 456666
Q ss_pred eeCc
Q 039048 476 NSHA 479 (482)
Q Consensus 476 ~Sh~ 479 (482)
++|+
T Consensus 603 L~s~ 606 (685)
T 3ho1_A 603 LLTV 606 (685)
T ss_dssp EECC
T ss_pred EEec
Confidence 6553
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=1.2e-36 Score=316.86 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=155.5
Q ss_pred hhhhhhhhccCcceeeecccccccccHH-HHHHHHHHhhccCCccceeeccccccCCCCcCCCCeEEEEEEeecCCCCCC
Q 039048 237 IIKRVCETELGIVSQCCQPRQASRLNMQ-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPGED 315 (482)
Q Consensus 237 ~iK~~~~~~~gi~tQci~~~~~~k~~~~-~~~ni~~KiN~KlGG~n~~~~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~ 315 (482)
.+|+ +..+.||+||||..+|+.+.+.+ ++.||++|||+||||+||.|+.. .|. .+|||||+||+|++++
T Consensus 124 ~~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-- 193 (427)
T 2w42_A 124 YKLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-- 193 (427)
T ss_dssp HHHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS--
T ss_pred HHHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC--
Confidence 3775 56799999999999999876644 48899999999999999999742 122 5799999999999864
Q ss_pred CCCcEEEEEEeecCCCcceeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHHHH-HcCCCCc--eEEEEEc
Q 039048 316 SSPSIAAVVASMDWPEVTKYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAFRR-STNFKPH--RIIFYRD 392 (482)
Q Consensus 316 ~~pSiaavvaS~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~P~--~IiiyRD 392 (482)
+++|++.+.| .+...+.+.+..|.+++|++++| .++|+++|+.|++ .|+.+|+ +||||
T Consensus 194 ---~v~g~a~v~~-~~g~~~~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~-- 254 (427)
T 2w42_A 194 ---NLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS-- 254 (427)
T ss_dssp ---EEEEEEEEEC-TTSCEEEEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE--
T ss_pred ---cEEEEEEEEc-CCCCEEEEEEEecCChhHHHHHH-------------HHHHHHHHHHHHHHhcCCCCCceEEEEE--
Confidence 5666655555 44444445555666789999999 9999999999999 8999898 66887
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhC----CCCCCEEEEEEecccc-eeeccCCCCCCCCCCCCCCCCCCeEEcCcccC
Q 039048 393 GVSEGQFSQVLLHEMNAIRQACASLEE----GYAPPVTFVVVQKRHH-TRLFPADHNRRDLTDRSGNILPGTVVDTHICH 467 (482)
Q Consensus 393 GVsegq~~~v~~~E~~~i~~a~~~~~~----~~~p~it~Ivv~Krh~-~Rff~~~~~~~~~~~~~~N~~pGTvVD~~vt~ 467 (482)
||+..+.++|+++|++||.++.. +++|+||||+|+|||| +|||..+. .+||+||||||.+
T Consensus 255 ----gq~~~v~~~Ei~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~--------~~nP~~GTvVd~~--- 319 (427)
T 2w42_A 255 ----GKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNN--------RFHPYEGTKVKLS--- 319 (427)
T ss_dssp ----SSCCSCHHHHHHHHHHHHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS---
T ss_pred ----eecccccHHHHHHHHHHHHHhccccccCCCCCEEEEEEEccccceeeecCCC--------CCCCCCceEEEcC---
Confidence 89999999999999999999875 7899999999999999 89886431 3699999999983
Q ss_pred CCcccEEEeeCcccC
Q 039048 468 PTEFDFYLNSHAGIQ 482 (482)
Q Consensus 468 p~~~dFyL~Sh~~lq 482 (482)
++|||++|.+.|
T Consensus 320 ---~~~~l~~~~g~q 331 (427)
T 2w42_A 320 ---SKRYLLTLLQPY 331 (427)
T ss_dssp ---SSEEEEEEEC--
T ss_pred ---CCeEEEEEEeee
Confidence 455555555443
No 9
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.34 E-value=1.9e-13 Score=120.51 Aligned_cols=48 Identities=83% Similarity=1.292 Sum_probs=45.8
Q ss_pred hhhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceee
Q 039048 237 IIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 284 (482)
Q Consensus 237 ~iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~ 284 (482)
.||++||+++||+|||+..+++.|.++||++||++|||+||||+||.|
T Consensus 92 ~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 92 KIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp HHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 499999999999999999999999999999999999999999999864
No 10
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.32 E-value=3.5e-13 Score=120.40 Aligned_cols=48 Identities=46% Similarity=0.679 Sum_probs=39.8
Q ss_pred hhhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceee
Q 039048 237 IIKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 284 (482)
Q Consensus 237 ~iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~ 284 (482)
.||++||+++||+|||+..+++.|.++||++||++|||+||||+||.|
T Consensus 103 ~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 103 TLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp HHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 399999999999999999999999999999999999999999999864
No 11
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.31 E-value=3.7e-13 Score=119.86 Aligned_cols=47 Identities=70% Similarity=1.161 Sum_probs=45.2
Q ss_pred hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccceee
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRNTVL 284 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n~~~ 284 (482)
||++||+++||+|||+..+++.|.++||++||++|||+||||+||.|
T Consensus 101 iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 101 LKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp HHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred HHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 99999999999999999999998899999999999999999999864
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.24 E-value=1.5e-12 Score=114.67 Aligned_cols=44 Identities=48% Similarity=0.739 Sum_probs=42.2
Q ss_pred hhhhhhhccCcceeeecccccccccHHHHHHHHHHhhccCCccc
Q 039048 238 IKRVCETELGIVSQCCQPRQASRLNMQYFENVALKINVKVGGRN 281 (482)
Q Consensus 238 iK~~~~~~~gi~tQci~~~~~~k~~~~~~~ni~~KiN~KlGG~n 281 (482)
||++||+++||+|||++.+++.|.++||++||++|||+||||+|
T Consensus 95 iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 95 VKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp HHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 99999999999999999999999899999999999999999987
No 13
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=97.79 E-value=1.1e-05 Score=69.20 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=49.6
Q ss_pred ccccHHHHHHHHhh--c--cCCCCCHHHHHHHHHHhcCcEEEEEeec----CceeeEEecccCCcccchhhh
Q 039048 176 EPILATEFVQYYCR--D--LSRPLSDQVRLKVKKALKGIKVVLTHME----YNKSYKITGISSQPMSQLIIK 239 (482)
Q Consensus 176 ~~~~l~~~~~~~~~--~--~~~~~~~~~~~~l~k~LkglkV~~~h~~----~~r~ykI~gl~~~~~~~~~iK 239 (482)
+++||+|||++++. + ..+++ ++++.+++++|+|++|+++|++ ..++|+|.||++.+++++++.
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l-~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~ 71 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNL-DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFE 71 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCG-GGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEE
T ss_pred CCccHHHHHHHHhhhcccccccCC-HHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEe
Confidence 47899999999953 1 23445 5667899999999999999963 457899999998887766544
No 14
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=97.73 E-value=1.8e-05 Score=69.62 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=49.3
Q ss_pred eccccHHHHHHHHhhc--c-CCCCCHHHHHHHHHHhcCcEEEEEeec----CceeeEEecccCCcccchhh
Q 039048 175 YEPILATEFVQYYCRD--L-SRPLSDQVRLKVKKALKGIKVVLTHME----YNKSYKITGISSQPMSQLII 238 (482)
Q Consensus 175 ~~~~~l~~~~~~~~~~--~-~~~~~~~~~~~l~k~LkglkV~~~h~~----~~r~ykI~gl~~~~~~~~~i 238 (482)
|+++||+|||++++.. . .+...++++.+++++|+|++|.++|++ ..++|+|.||++.++++.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F 72 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF 72 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEE
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEE
Confidence 6889999999998632 1 223446778889999999999999964 45789999999888876644
No 15
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=96.93 E-value=0.00037 Score=73.56 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=53.7
Q ss_pred ecceeeeeccccHHHHHHHHhhc-cCCCCC--HHHHHHHHHHhcCcEEEEEeecC----ceeeEEecccCCcccchhh
Q 039048 168 DVSARSFYEPILATEFVQYYCRD-LSRPLS--DQVRLKVKKALKGIKVVLTHMEY----NKSYKITGISSQPMSQLII 238 (482)
Q Consensus 168 Dvs~~aF~~~~~l~~~~~~~~~~-~~~~~~--~~~~~~l~k~LkglkV~~~h~~~----~r~ykI~gl~~~~~~~~~i 238 (482)
+.....||+++||+|++.+++.. ..+.++ ++...+++++||||+|+++|++. .|+|+|.|++..+++++++
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f 452 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF 452 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEe
Confidence 34567899999999999998632 222233 34445699999999999999865 6789999999877766543
No 16
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=95.56 E-value=0.011 Score=52.01 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=44.9
Q ss_pred cccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcccchh
Q 039048 177 PILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPMSQLI 237 (482)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~~~~~ 237 (482)
+++|+|||.+++.. ...+..+.++++.|+|+.|.++| +++.|+|.+|++.++...+
T Consensus 2 ~~tvld~~~~~~~~---~~~~~~~~~~~~~l~g~~V~t~y--~nr~yrI~~i~~~~~p~~~ 57 (150)
T 2xfm_A 2 SETVLDFMFNLYQQ---TEEHKFQEQVSKELIGLIVLTKY--NNKTYRVDDIDWDQNPKST 57 (150)
T ss_dssp CCBHHHHHHHHHHH---SCHHHHHHHHHHHHTTCEEEETT--TTEEEECCEEETTCCTTCC
T ss_pred CccHHHHHHHHHcc---ccchHHHHHHHHHhCCcEEEEee--CCceEEeeecCCCCCccCe
Confidence 57999999998753 12244678899999999999999 4588999999988776543
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=87.03 E-value=0.5 Score=39.92 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcc
Q 039048 178 ILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPM 233 (482)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~ 233 (482)
.+++|+|.++.... -....+.++++.|+|+.|.+.|. ++.|+|.+|.+..+
T Consensus 2 ~tvld~~~~~~~~~---~~~~~~~~~~k~l~G~~V~t~yn--nk~YrI~~I~~~~~ 52 (124)
T 3o7v_X 2 ETVLDFMFNFYHQT---EEHKFQEQVSKELIGLVVLTKYN--NKTYRVDDIDWDQN 52 (124)
T ss_dssp CBHHHHHHHSCCCS---SHHHHHHHHHHHHTTCEEEETTS--SCEEECCEEETTCC
T ss_pred ccHHHHHHHHHHhc---ccHHHHHHHHHHcCCCEEEEeeC--CeEEEEeeeCCCCC
Confidence 47889998874211 12346788999999999999983 57899999986554
No 18
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=86.78 E-value=0.47 Score=41.38 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.8
Q ss_pred cccHHHHHHHHhhccCCCCCHHHHHHHHHHhcCcEEEEEeecCceeeEEecccCCcc
Q 039048 177 PILATEFVQYYCRDLSRPLSDQVRLKVKKALKGIKVVLTHMEYNKSYKITGISSQPM 233 (482)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~k~LkglkV~~~h~~~~r~ykI~gl~~~~~ 233 (482)
..+|+|+|.++.... ....+.++++.|+|+.|.++| +++.|+|.+|.+..+
T Consensus 2 ~~tvld~m~~~~~~~----~~~~~~~~~k~l~g~~V~t~y--nnk~YrI~~I~~~~~ 52 (148)
T 3qir_A 2 NDCVLDVMHAIYQQN----KEHFQDECTKLLVGNIVITRY--NNRTYRIDDVDWNKT 52 (148)
T ss_dssp CCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCEEEETT--TCCEEECCEEETTCC
T ss_pred cchHHHHHHHHHhhC----cHHHHHHHHHHcCCCEEEEcc--CCcEEEEeeecCCCC
Confidence 358899998874321 134678999999999999988 457899999975544
No 19
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=83.38 E-value=12 Score=32.80 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=57.4
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcc--eeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 299 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 299 ~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
|.-|=++|+||-.. .-+|||+|.-.| ..+. .|.- ..+.. +-.+|+ .+|.|.|..-
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~-g~p~K~~YRr-f~I~~---~g~DDy--------------a~M~Evl~RR 73 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYRR-YKIEQ---DHPDDY--------------ESIRTVVKRR 73 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEET-TEECGGGCEE-EEC--------CHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCce-eecCC---CCCCHH--------------HHHHHHHHHH
Confidence 67899999999653 357888888776 3322 2321 22221 112443 4667777655
Q ss_pred HHHcCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
+..- .+|+-|+| || +.||+.. .++++.++.- .+.+|-+.|+ ..++|.
T Consensus 74 ~~r~-~~PDLilI--DG-GkgQl~a--------A~~vl~elg~----~i~v~glAK~-~e~l~~ 120 (159)
T 2nrr_A 74 YSKH-PLPNLLFV--DG-GIGQVNA--------AIEALKEIGK----DCPVVGLAKK-EETVVF 120 (159)
T ss_dssp HTTS-CCCSEEEE--SS-CHHHHHH--------HHHHHHHTTC----CCCEEEEC-----CEEE
T ss_pred hccC-CCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CccEEEEEcC-CcEEEe
Confidence 4432 78997665 88 7788764 4567777642 3457878887 345554
No 20
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=70.64 E-value=35 Score=31.42 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=61.9
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcc--eeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 299 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 299 ~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
|.-|=++|+||-.. .-+|+|+|.--| ..+. .|.- ..+.. +-.+|+ .+|.|.|..-
T Consensus 22 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YRr-f~i~~---~g~DDy--------------a~m~Evl~RR 78 (220)
T 2nrt_A 22 PYRIEGIDISHLQG----KYTVASLVVFED-GFPKKGDYRR-YKIEQ---DHPDDY--------------ESIRTVVKRR 78 (220)
T ss_dssp CCEEEEEEEEEETT----TEEEEEEEEEET-TEECGGGCEE-EEEEC---SSCCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeC-CccChhhCce-eeCCC---CCCCHH--------------HHHHHHHHHH
Confidence 66899999999753 457888888766 3322 2322 22221 112443 4667777555
Q ss_pred HHHcCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHHHhhhCCCCCCEEEEEEecccceeecc
Q 039048 377 RRSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRHHTRLFP 440 (482)
Q Consensus 377 ~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 440 (482)
+..- .+|+-|+| || +-||+.. .++++.++.- .+.+|-+.|+. .++|-
T Consensus 79 ~~r~-~~PDLili--DG-GkgQl~~--------a~~vl~~lg~----~i~v~glaK~~-e~l~~ 125 (220)
T 2nrt_A 79 YSKH-PLPNLLFV--DG-GIGQVNA--------AIEALKEIGK----DCPVVGLAKKE-ETVVF 125 (220)
T ss_dssp HTTS-CCCSEEEE--SS-SHHHHHH--------HHHHHHHTTC----CCCEEEECTTT-CCEEE
T ss_pred hccC-CCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCeEEEEECCC-cEEEe
Confidence 4432 78997665 88 7787764 4566777642 35588888873 44543
No 21
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=64.17 E-value=2.5 Score=36.89 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=45.2
Q ss_pred HHHHHHHHHHc-CCCCceEEEEEcCCCchhHHHHHHHHHHH----HHHHHHhhhC----CCCCCEEEEEEecccc
Q 039048 370 RELLIAFRRST-NFKPHRIIFYRDGVSEGQFSQVLLHEMNA----IRQACASLEE----GYAPPVTFVVVQKRHH 435 (482)
Q Consensus 370 ~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~v~~~E~~~----i~~a~~~~~~----~~~p~it~Ivv~Krh~ 435 (482)
.+.|..|+++- ..+|...+||-|+++|.+.......|+.- +++++..++. =|.-.+|+||-.+...
T Consensus 45 ~~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~ 119 (160)
T 3qbz_A 45 PKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVE 119 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSS
T ss_pred HHHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCc
Confidence 34566776653 46887789999999998666555555544 6677777753 2678889888665443
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=49.95 E-value=1e+02 Score=28.32 Aligned_cols=98 Identities=22% Similarity=0.273 Sum_probs=54.0
Q ss_pred CeEEEEEEeecCCCCCCCCCcEEEEEEeecCCCcc--eeeeEEEeccCcchhhhccccccCCCCCCcchhhHHHHHHHHH
Q 039048 299 PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVT--KYRGLVSAQAHHEEIIQDLYKSTQDPQRGLVHGGMIRELLIAF 376 (482)
Q Consensus 299 ~tmiiG~DV~H~~~~~~~~pSiaavvaS~d~~~~~--~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~~ 376 (482)
|.-|=++|+||-.. .-+|||+|.--| ..+. .|.- ..+.. .+-.+|+ .+|.|.|..-
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~-g~p~k~~YR~-f~i~~--~~g~DDy--------------a~m~Evl~RR 71 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLD-GKPAKKEYRK-YKVKT--VAGPNDY--------------ETMREVVRRR 71 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEET-TEECGGGCEE-EECCC--CCTTCHH--------------HHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeC-CccChhhCce-eecCC--CCCCcHH--------------HHHHHHHHHH
Confidence 67899999999653 457888888776 3322 2321 22211 1112343 3445555433
Q ss_pred H----HHcCCCCceEEEEEcCCCchhHHHHHHHHHHHHHHHH-HhhhCCCCCCEEEEEEecc
Q 039048 377 R----RSTNFKPHRIIFYRDGVSEGQFSQVLLHEMNAIRQAC-ASLEEGYAPPVTFVVVQKR 433 (482)
Q Consensus 377 ~----~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~-~~~~~~~~p~it~Ivv~Kr 433 (482)
+ +....+|+-|+| || +-||+.. .++++ .++.- .+.+|-+.|+
T Consensus 72 ~~r~~~e~~~~PDLili--DG-GkgQl~~--------a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 72 YTRVLKEGLPLPDLIII--DG-GKGHLSA--------VRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHHHHHHTCCCCSEEEE--SS-CHHHHHH--------HHHHHHHTSCC----CCCEEEC---
T ss_pred HhhhhcccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHhcCC----CceEEEEEcC
Confidence 2 222368997765 88 7787764 45667 46642 3457777774
No 23
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=45.79 E-value=21 Score=38.56 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=87.7
Q ss_pred ecCCCCChHHHHHHHHHHHHHhhhccCCCCcceeeCCCceeecCCCCCC-cceEEEEcCCCCCCCCCCCCCCCCceEEEE
Q 039048 3 ITPEVTSKKINRQIISQLINLYRLTNLGGRIPAYDGMKSIYTAGPLPFE-SKEFIIKLPDSDPRPSSSTRPRKERQFRVV 81 (482)
Q Consensus 3 I~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~a~DG~k~l~s~~~Lp~~-~~~~~V~~~~~~~~~~~~~~~~~~~~f~V~ 81 (482)
.+|++..-+..+ .+..+..+ .|+ +|--....+.|-.+ |.. -.+-.|.- .++...|++.
T Consensus 33 ~~~~~~~~~~~~-~~~~~~~~-----~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~ 91 (685)
T 3ho1_A 33 LDPPPGREEVYP-LLAQVARR-----AGG--VTVRMGDGLASWSP-PEVLVLEGTLAR------------MGQTYAYRLY 91 (685)
T ss_dssp EESCCCTTTHHH-HHHHHHHH-----TCS--SEEEETTEEEESSC-TTTSCCEEEEEC------------SSCEEEEEEE
T ss_pred cCCCCCcchHHH-HHHHHHHH-----hCC--eEEeecCceecccC-chhhhccchhcc------------ccCCcceeee
Confidence 455555555545 45555543 233 35556667777766 531 11222211 1345568888
Q ss_pred EeecccCChHHHHHHHcccCCCCchhHHH-----HHHHHhccCCCCCccccccccccCCCCCcccCCCceeeeeeeeeee
Q 039048 82 IRLASKPDLYTLQQFLRRRHFEVPYEVIQ-----VLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGVEYWRGYFQSL 156 (482)
Q Consensus 82 I~~~~~i~l~~L~~~l~~~~~~~~~~~iq-----~Ldiilr~~ps~~~~~vgrsFF~~~~~~~~~lg~Gle~wrG~fqSv 156 (482)
-.-...+|...= ...+|+. .|+-.|+.. ....+ -|.-.+... + .-|.|.|+.||+--.|
T Consensus 92 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~-~---~~~~~~~~~~g~~~~v 155 (685)
T 3ho1_A 92 PKGRRPLDPKDP----------GERSVLSALARRLLQERLRRL-EGVWV-EGLAVYRRE-H---ARGPGWRVLGGAVLDL 155 (685)
T ss_dssp EEEECCCCTTSH----------HHHHHHHHHHHHHHHHHHHTC-SSSEE-ETTEEEEEE-E---EEETTEEEEEEEEEEE
T ss_pred ecccccCCCCCh----------HHHHHHHHHHHHHHHHHHHhh-hceEE-ccEEEEeec-C---CCCCceEEecceEEEE
Confidence 888887775421 0123333 345556665 22222 233333321 1 2288999999999999
Q ss_pred eecc-cceeeeeecceeeeeccccHHHHHHHH
Q 039048 157 RPTQ-MGLSLNIDVSARSFYEPILATEFVQYY 187 (482)
Q Consensus 157 Rp~~-~~l~LNvDvs~~aF~~~~~l~~~~~~~ 187 (482)
-++. ++++|.||..|- ||.+-++.+++.+.
T Consensus 156 ~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~ 186 (685)
T 3ho1_A 156 WVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQG 186 (685)
T ss_dssp EECSSSEEEEEEEEEEE-EEECSCHHHHHHHS
T ss_pred EECCCCcEEEEEeehee-ecChhhHHHHHHhC
Confidence 9998 899999999875 55578999888883
Done!