BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039049
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 203 bits (517), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/297 (39%), Positives = 169/297 (56%), Gaps = 7/297 (2%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
CVTG +GFI + LV LL++G+ VR TVRDP ++ KV L +L AE L + KADL E
Sbjct: 9 CVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADE 68
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
GSFDEAI+G GVFH A+P+ + + +I P I+G L ++ SC AK+V+R+V TS
Sbjct: 69 GSFDEAIKGCTGVFHVATPMDFE-SKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127
Query: 125 SCSSIRYRHDAQQVSPLNESHWSDPDYC--KHYNLW-YAYAKTIAEKEAWRIAKDCGIDM 181
S ++ + Q+ +ES WSD ++C K W Y +KT+AE+ AW+ AK+ ID
Sbjct: 128 SAGTVNIQE--HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDF 185
Query: 182 VVVNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEYPNTTVG-FVHIDDVVGAHILAMEET 240
+ + P+ VVGP + +L+ L+ + G Y G FVH+DD+ AHI E
Sbjct: 186 ITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENP 245
Query: 241 RASGRLICSSSVAHWSPIIEMLKATYPSYPYESKCSKQEGDNSPHSMDTSKLFELGF 297
+A GR ICSS + +ML+ YP Y ++ + + + KL +LGF
Sbjct: 246 KAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGF 302
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/307 (36%), Positives = 171/307 (55%), Gaps = 20/307 (6%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
CV GGTGF+A+ LVK LL KG+ V TTVRDP++ KV L EL + LKI +ADL E
Sbjct: 13 CVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADLTDE 71
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
SF+ I G D VFH A+PV ++ + +I P I+G +NV+ +C +AKSVKRV+LTS
Sbjct: 72 LSFEAPIAGCDFVFHVATPVHFASEDP-ENDMIKPAIQGVVNVMKACTRAKSVKRVILTS 130
Query: 125 SCSSIRYRHDAQQVSPLNESHWSDPDYCKHYN--LW-YAYAKTIAEKEAWRIAKDCGIDM 181
S +++ ++E +W+D ++ W Y +KT+AEK AW+ A++ ID+
Sbjct: 131 SAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDL 190
Query: 182 VVVNPSFVVGPLLAPQPTSTLLLILA-------MVKGLRG-EYPNTTVGFVHIDDVVGAH 233
+ V P+ + G L S++ L ++ ++ G++G + + +V H++DV AH
Sbjct: 191 ITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAH 250
Query: 234 ILAMEETRASGRLICSSSVAHWSPIIEMLKATYPSYPYESKCSKQEGDNSPHS---MDTS 290
I E+ ASGR IC ++ + + L YP Y K GD P S + +
Sbjct: 251 IFVAEKESASGRYICCAANTSVPELAKFLSKRYPQY----KVPTDFGDFPPKSKLIISSE 306
Query: 291 KLFELGF 297
KL + GF
Sbjct: 307 KLVKEGF 313
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 10/299 (3%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVR-DPEDLSKVGFLWELNGAEERLKIMKADLLM 63
CVTGGTGF+ + ++K+LL+ G+ V TT+R DPE V FL L GA E+L ADL
Sbjct: 5 CVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSN 64
Query: 64 EGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLT 123
SF AI+G G+FHTASP+ + + + + G L +L +C +K+VKR + T
Sbjct: 65 PDSFAAAIEGCVGIFHTASPIDFAV-SEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 124 SSCSSIRYRHDAQQVSPLNESHWSDPDY---CKHYNLWYAYAKTIAEKEAWRIAKDCGID 180
SS S++ + + V L+ES WSD D K + YA +KT+AEK + GID
Sbjct: 124 SSGSAVSFNGKDKDV--LDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID 181
Query: 181 MVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEYPNTTVGFVHIDDVVGAHILAMEET 240
+V + F+VG + P+ ++ L +V G + + T VH+DDV AHI +E +
Sbjct: 182 VVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENS 241
Query: 241 RASGRLICSSSVAHWSPIIEMLKATYPSYPYES--KCSKQEGDNSPHSMDTSKLFELGF 297
GR CS + + ++L A YP Y + + + +G P ++T KL + GF
Sbjct: 242 VPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLP-DLNTKKLVDAGF 299
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 150/329 (45%), Gaps = 40/329 (12%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTG GF+A+H+V+ LL+ G+ VR T R L+ + W+ + D+L +
Sbjct: 15 LVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ 74
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
G++DE I+G GV H AS +V + N ++ P I GTLN L + SVKR VLTS
Sbjct: 75 GAYDEVIKGAAGVAHIAS--VVSFSNKYD-EVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 125 SCSSIRYRHDAQQVSPLNESHW---------SDPDYCKHYNLW-YAYAKTIAEKEAWRIA 174
S S + L+E W + P+ +LW YA +KT AE AW+
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 175 KDCG--IDMVVVNPSFVVGPLLAP--QPTSTLLLILAMVKG--------LRGEYPNTTV- 221
+ + V P++ +G + P Q ST ++++ G + +Y + V
Sbjct: 192 DENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVD 251
Query: 222 -GFVHIDDVVGAHILAMEETRASGRLICSSSVAHWSPIIEMLKATYPSYPYESKCSKQEG 280
G +H+ G +L E R R+ ++ W+ ++ + YPS + + Q
Sbjct: 252 IGLLHL----GCLVLPQIERR---RVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQ 304
Query: 281 DNSPHSMDTSKLFE----LGFVGFKSVPQ 305
D S DT+ E LG G++S+ +
Sbjct: 305 DLS--KFDTAPSLEILKSLGRPGWRSIEE 331
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 34/326 (10%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTG GF+A+H+V+ LL+ G+ VR T R L+ + W+ + D L +
Sbjct: 15 LVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLKQ 74
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
G++DE I+G GV H AS +V + N ++ P I GTLN L + SVKR VLTS
Sbjct: 75 GAYDEVIKGAAGVAHIAS--VVSFSNKYD-EVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 125 SCSSIRYRHDAQQVSPLNESHW---------SDPDYCKHYNLW-YAYAKTIAEKEAWRIA 174
S S + L+E W + P+ +LW YA +KT AE AW+
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFX 191
Query: 175 KDCG--IDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEY--------PNTTVGFV 224
+ + V P++ +G + P+ T + GE P V V
Sbjct: 192 DENKPHFTLNAVLPNYTIGTIFDPE-TQSGSTSGWXXSLFNGEVSPALALXPPQYYVSAV 250
Query: 225 HIDDV-VGAHILAMEETRASGRLICSSSVAHWSPIIEMLKATYPSYPYESKCSKQEGDNS 283
I + +G +L E R R+ ++ W+ ++ + YPS + + Q D S
Sbjct: 251 DIGLLHLGCLVLPQIERR---RVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLS 307
Query: 284 PHSMDTSKLFE----LGFVGFKSVPQ 305
DT+ E LG G++S+ +
Sbjct: 308 --KFDTAPSLEILKSLGRPGWRSIEE 331
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 37/252 (14%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TGG GF+ +HL L+ GH V TV D F E + +L+
Sbjct: 9 LITGGAGFVGSHLTDKLMMDGHEV--TVVDN------FFTGRKRNVEHWIGHENFELINH 60
Query: 65 GSFDEAIQGVDGVFHTASPVLVP-YDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLT 123
+ VD ++H ASP P Y N TL I GTLN+L K+ + R++L
Sbjct: 61 DVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTI-GTLNMLGLAKRVGA--RLLLA 117
Query: 124 SSCSSIRYRHDAQQVSPLNESHWS-----DPDYCKHYNLWYAYAKTIAEKEAWRIAKDCG 178
S+ + +V P +E +W P C Y K +AE + K G
Sbjct: 118 STSEV----YGDPEVHPQSEDYWGHVNPIGPRAC------YDEGKRVAETMCYAYMKQEG 167
Query: 179 IDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEYPNTTVG-------FVHIDDVVG 231
+++ V GP + ++ +++ L+GE P T G F ++ D+V
Sbjct: 168 VEVRVARIFNTFGPRM--HMNDGRVVSNFILQALQGE-PLTVYGSGSQTRAFQYVSDLVN 224
Query: 232 AHILAMEETRAS 243
+ M +S
Sbjct: 225 GLVALMNSNVSS 236
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TGG GF+ +HL L GH V TV D F E + +L+
Sbjct: 31 LITGGAGFVGSHLTDKLXXDGHEV--TVVDN------FFTGRKRNVEHWIGHENFELINH 82
Query: 65 GSFDEAIQGVDGVFHTASPVLVP-YDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLT 123
+ VD ++H ASP P Y N TL I GTLN L AK V +L
Sbjct: 83 DVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTI-GTLNXLGL---AKRVGARLLL 138
Query: 124 SSCSSIRYRHDAQQVSPLNESHWS-----DPDYCKHYNLWYAYAKTIAEKEAWRIAKDCG 178
+S S + + +V P +E +W P C Y K +AE + K G
Sbjct: 139 ASTSEV---YGDPEVHPQSEDYWGHVNPIGPRAC------YDEGKRVAETXCYAYXKQEG 189
Query: 179 IDMVVVNPSFVVGP 192
+++ V GP
Sbjct: 190 VEVRVARIFNTFGP 203
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 36/309 (11%)
Query: 6 VTGGTGFIAAHLVKALLDKGH--MVRTTVRDPEDLSKVGFLWELN--GAEERLKIMKADL 61
VTGG GFI +H V+ LL + + V + L+ G L A+ RL+ + D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 62 LMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVV 121
G ++GVD + H A+ V + + ++GT +L C V RVV
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLL-QCAVDAGVGRVV 123
Query: 122 LTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKDCGIDM 181
S+ Q ++ W++ + N YA +K ++ A + G+D+
Sbjct: 124 HVSTN---------QVYGSIDSGSWTESSPLEP-NSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 182 VVVNPSFVVGPLLAPQPTSTLLLILAMVKG---LRGEYPNTTVGFVHIDDVVGAHILAME 238
+ GP P+ L + + G L G+ N +VH DD H +
Sbjct: 174 RITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVRE-WVHTDD----HCRGIA 228
Query: 239 ETRASGRLICSSSVAHWSPIIE---------MLKATYPSYPYESKCSKQEGDNSPHSMDT 289
A GR + + H +E +L + + K + ++G + +S+D
Sbjct: 229 LVLAGGR---AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDG 285
Query: 290 SKL-FELGF 297
K+ ELG+
Sbjct: 286 GKIERELGY 294
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 123/309 (39%), Gaps = 36/309 (11%)
Query: 6 VTGGTGFIAAHLVKALLDKGH--MVRTTVRDPEDLSKVGFLWELN--GAEERLKIMKADL 61
VTGG GFI +H V+ LL + + V + L+ G L A+ RL+ + D+
Sbjct: 5 VTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDI 64
Query: 62 LMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVV 121
G ++GVD + H A+ V + + ++GT +L C V RVV
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLL-QCAVDAGVGRVV 123
Query: 122 LTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKDCGIDM 181
S+ + ++ W++ + N YA +K ++ A + G+D+
Sbjct: 124 HVST---------DEVYGSIDSGSWTESSPLEP-NSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 182 VVVNPSFVVGPLLAPQPTSTLLLILAMVKG---LRGEYPNTTVGFVHIDDVVGAHILAME 238
+ GP P+ L + + G L G+ N +VH DD H +
Sbjct: 174 RITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVRE-WVHTDD----HCRGIA 228
Query: 239 ETRASGRLICSSSVAHWSPIIE---------MLKATYPSYPYESKCSKQEGDNSPHSMDT 289
A GR + + H +E +L + + K + ++G + +S+D
Sbjct: 229 LVLAGGR---AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDG 285
Query: 290 SKL-FELGF 297
K+ ELG+
Sbjct: 286 GKIERELGY 294
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
+TGGTG V+ +LD + + V ++L + E N + R++ D+
Sbjct: 26 ITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLE 83
Query: 66 SFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTSS 125
+ A++GVD H A+ VP I I G NV+++C K ++ +V+ S+
Sbjct: 84 RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLK-NAISQVIALST 142
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTGG GFI +++VKAL DKG V + +D +K L +LN A+ + K D L++
Sbjct: 3 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD---YMDKEDFLIQ 59
Query: 65 GSFDEAIQGVDGVFHTASPVLVP-------YDNNIQAT--LIDPCIKGTLNVLSSCKKA 114
E V+ +FH + DNN Q + L+ C++ + L + A
Sbjct: 60 IMAGEEFGDVEAIFHEGAXSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAA 118
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTGG GFI +++VKAL DKG V + +D +K L +LN A+ + K D L++
Sbjct: 50 IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD---YMDKEDFLIQ 106
Query: 65 GSFDEAIQGVDGVFHTAS 82
E V+ +FH +
Sbjct: 107 IMAGEEFGDVEAIFHEGA 124
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+ G +GF+ + L+ L++G V VR PE + E LK+ KAD+
Sbjct: 8 VLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI---------ENEHLKVKKADVSSL 58
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
E +G D V +P ++N + D IK L ++ KKA V R +
Sbjct: 59 DEVCEVCKGADAVISAFNP---GWNN---PDIYDETIKVYLTIIDGVKKA-GVNRFLXVG 111
Query: 125 SCSSI 129
S+
Sbjct: 112 GAGSL 116
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 109/275 (39%), Gaps = 59/275 (21%)
Query: 1 MPEYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKAD 60
M + GG G+I +H VK L+D+G V D + G + E K D
Sbjct: 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVV-----DNLQTG---HEDAITEGAKFYNGD 52
Query: 61 LLMEGSFDEAI--QGVDGVFHTASPVLVP---------YDNNIQATLIDPCIKGTLNVLS 109
L + + + ++ V H A+ LV Y+NN+ L C+ L V+
Sbjct: 53 LRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGAL---CL---LEVMD 106
Query: 110 SCKKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYC--------KHYNLWYAY 161
K V + + +S+ ++ + V + E ++P + WY+
Sbjct: 107 EFK----VDKFIFSSTAAT----YGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQ 158
Query: 162 AKTIAEKEAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR------GE 215
A + K +R G P+ ++G P+ T + L+L + G R G+
Sbjct: 159 ASNLRYK-IFRYFNVAG-----ATPNGIIGEDHRPE-THLIPLVLQVALGQREKIMMFGD 211
Query: 216 YPNTTVG-----FVHIDDVVGAHILAMEETRASGR 245
NT G ++H++D+V AH L +++ + G
Sbjct: 212 DYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGE 246
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEK----- 168
A +VK + +SS + + Q P ES + Y +K + E+
Sbjct: 113 AANVKNFIFSSSATV----YGDQPKIPYVESFPTGTPQSP-----YGKSKLMVEQILTDL 163
Query: 169 ----EAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAE------ 167
A +VK + +SS + V P Y +K + E
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSP---------YGKSKLMVEQILTDL 163
Query: 168 ---KEAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
+ W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAE------ 167
A +VK + +SS + V P Y +K + E
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSP---------YGKSKLMVEQILTDL 163
Query: 168 ---KEAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
+ W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 119/298 (39%), Gaps = 49/298 (16%)
Query: 1 MPEYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKAD 60
M + +TG G I +H+ + LL++G V VG G E LK
Sbjct: 21 MKKVFITGICGQIGSHIAELLLERGDKV------------VGIDNFATGRREHLKDHPNL 68
Query: 61 LLMEGSF-DEAIQGV-------DGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCK 112
+EGS D A+ D V HTA+ P D+ TL + C+ G+ NV+ + K
Sbjct: 69 TFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDP-DDWYNDTLTN-CVGGS-NVVQAAK 125
Query: 113 KAKSVKRVVL--TSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEA 170
K +V R V T+ C ++ QQ P+ H +P N YA +K+ E
Sbjct: 126 K-NNVGRFVYFQTALCYGVK---PIQQ--PVRLDHPRNP-----ANSSYAISKSANED-- 172
Query: 171 WRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEYPNTTVGFVHIDDVV 230
+ G+D V + VVGP P L+ +G + FV + D+
Sbjct: 173 --YLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLS--EGKKCFVTKARRDFVFVKDLA 228
Query: 231 GAHILAMEETRASGRLICSSSVAH----WSPIIEMLKATYPSYPYESKCSKQEGDNSP 284
A + A++ S + + ++E + PSYP E + + D++P
Sbjct: 229 RATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAM--ALPSYP-EPEIRELGPDDAP 283
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 6 VTGGTGFIAAHLVKALLDKGHM----------VRTTVRDPEDLSKVGFLWELNGAEERLK 55
VTGG G+I +H V LL+ G++ R PE L +V EL G +
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV---QELTGRSVEFE 63
Query: 56 IMKADLLMEGSFDEAIQGVD--GVFHTASPVLVPYDNNIQATL--IDPCIKGTLNVLSSC 111
M D+L +G+ + V H A L ++Q L + GT+ +L
Sbjct: 64 EM--DILDQGALQRLFKKYSFMAVIHFAG--LKAMGESVQKPLDYYRVNLTGTIQLL-EI 118
Query: 112 KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESH 145
KA VK +V +SS + + Q PL+E+H
Sbjct: 119 MKAHGVKNLVFSSSATV----YGNPQYLPLDEAH 148
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTGG GFI +HLV L++ G+ ++ V + G L + L +
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGY----------EVVVVDIVQRDTGGSAELHVRD---LKD 50
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
S+ I+G D VFH A+ V + + T NVL ++ V+ VV S
Sbjct: 51 YSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFAS 108
Query: 125 SCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKDCGIDMVVV 184
S + + V P E P Y AK E A+ G+ + V
Sbjct: 109 SSTV----YGDADVIPTPEEEPYKPISV------YGAAKAAGEVMCATYARLFGVRCLAV 158
Query: 185 NPSFVVGPLL 194
+ VVGP L
Sbjct: 159 RYANVVGPRL 168
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
VTGG GFI +HLV L++ G+ V ++LS + AE ++ +K +
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVV----DNLSSGRREFVNPSAELHVRDLK-----D 54
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
S+ I+G D VFH A+ V + + T NVL ++ V+ VV S
Sbjct: 55 YSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFAS 112
Query: 125 SCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKDCGIDMVVV 184
S + + V P E P Y AK E A+ G+ + V
Sbjct: 113 SSTV----YGDADVIPTPEEEPYKPISV------YGAAKAAGEVMCATYARLFGVRCLAV 162
Query: 185 NPSFVVGPLL 194
+ VVGP L
Sbjct: 163 RYANVVGPRL 172
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 6 VTGGTGFIAAHLVKALLDKGHM----------VRTTVRDPEDLSKVGFLWELNGAEERLK 55
VTGG G+I +H V LL+ G++ R PE L +V EL G +
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV---QELTGRSVEFE 63
Query: 56 IMKADLLMEGSFDEAIQGVD--GVFHTASPVLVPYDNNIQATL--IDPCIKGTLNVLSSC 111
M D+L +G+ + V H A L ++Q L + GT+ +L
Sbjct: 64 EM--DILDQGALQRLFKKYSFMAVIHFAG--LKAVGESVQKPLDYYRVNLTGTIQLL-EI 118
Query: 112 KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESH 145
KA VK +V +SS + + Q PL+E+H
Sbjct: 119 MKAHGVKNLVFSSSATV----YGNPQYLPLDEAH 148
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 26/154 (16%)
Query: 6 VTGGTGFIAAHLVKALLDKGHM----------VRTTVRDPEDLSKVGFLWELNGAEERLK 55
VTGG G+I +H V LL+ G++ R PE L +V EL G +
Sbjct: 7 VTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV---QELTGRSVEFE 63
Query: 56 IMKADLLMEGSFDEAIQGVD--GVFHTASPVLVPYDNNIQATL--IDPCIKGTLNVLSSC 111
M D+L +G+ + V H A L ++Q L + GT+ +L
Sbjct: 64 EM--DILDQGALQRLFKKYSFMAVIHFAG--LKAVGESVQKPLDYYRVNLTGTIQLL-EI 118
Query: 112 KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESH 145
KA VK +V +SS + + Q PL+E+H
Sbjct: 119 MKAHGVKNLVFSSSATV----YGNPQYLPLDEAH 148
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 95/257 (36%), Gaps = 35/257 (13%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRI 173
A +VK + +SS + + V P + + W I
Sbjct: 113 AANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 174 AKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYPNT----TVG 222
A + V +PS +G P + + I + G R +YP
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 223 FVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 233 YIHVMDLADGHVVAMEK 249
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 102/266 (38%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEK----- 168
A +VK + +S+ + + Q P ES + Y +K + E+
Sbjct: 113 AANVKNFIFSSAATV----YGDQPKIPYVESFPTGTPQSP-----YGKSKLMVEQILTDL 163
Query: 169 ----EAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAE------ 167
A +VK + +S+ + V P Y +K + E
Sbjct: 113 AANVKNFIFSSTATVYGDNPKIPYVESFPTGTPQSP---------YGKSKLMVEQILTDL 163
Query: 168 ---KEAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
+ W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAE------ 167
A +VK + +S+ + V P Y +K + E
Sbjct: 113 AANVKNFIFSSAATVYGDNPKIPYVESFPTGTPQSP---------YGKSKLMVEQILTDL 163
Query: 168 ---KEAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
+ W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELN--GAEERLKIMKADLL 62
+TG G A+L K LL+KG+ V R + + W L G E +KI+ DLL
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS----WRLKELGIENDVKIIHMDLL 62
Query: 63 MEGSFDEAIQGV--DGVFHTA--SPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVK 118
+ I+ V D V++ A S V V ++ I +D G L +L + + K
Sbjct: 63 EFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAI--GVLRILEALRTVKPDT 120
Query: 119 RVVLTSSCSSIRYRHDAQQV--------SPLNES----HWSDPDYCKHYNLW 158
+ S+ + Q SP + HW +Y + YN++
Sbjct: 121 KFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMF 172
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 35/257 (13%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRI 173
A +VK + +S+ + + V P + + W I
Sbjct: 113 AANVKNFIFSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 174 AKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYPNT----TVG 222
A + V +PS +G P + + I + G R +YP
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 223 FVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 233 YIHVMDLADGHVVAMEK 249
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCS 127
A +VK + +S+ +
Sbjct: 113 AANVKNFIFSSAAT 126
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 1 MPEYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKAD 60
M VTGG GFI +H+V L + +V V D F+ E +++KAD
Sbjct: 1 MSLIVVTGGAGFIGSHVVDKLSESNEIV---VIDNLSSGNEEFV------NEAARLVKAD 51
Query: 61 LLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRV 120
L + + ++G + V+H A+ V + + T +L + +KA V R+
Sbjct: 52 LAAD-DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRI 109
Query: 121 VLTSSCS 127
V TS+ +
Sbjct: 110 VFTSTST 116
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 97/266 (36%), Gaps = 53/266 (19%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFL---WELNG-------AEERLK 55
VTGG+G+I +H LL GH V + D SK L L G + R +
Sbjct: 5 VTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNE 62
Query: 56 IMKADLLMEGSFDEAIQ--GVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ ++L + + D I G+ V + L YDNN+ TL L S +
Sbjct: 63 ALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTL----------RLISAMR 112
Query: 114 AKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEK----- 168
A +VK + +S + V P Y +K + E+
Sbjct: 113 AANVKNFIFSSVATVYGDNPKIPYVESFPTGTPQSP---------YGKSKLMVEQILTDL 163
Query: 169 ----EAWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLLILAMVKGLR-------GEYP 217
W IA + V +PS +G P + + I + G R +YP
Sbjct: 164 QKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYP 223
Query: 218 NT----TVGFVHIDDVVGAHILAMEE 239
++H+ D+ H++AME+
Sbjct: 224 TEDGTGVRDYIHVMDLADGHVVAMEK 249
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGF------LWELNGAEERLKIMK 58
VTGG GFI ++ ++ +L+K H + ++ K+G+ L +L + R +K
Sbjct: 7 LVTGGMGFIGSNFIRYILEK-HPDWEVI----NIDKLGYGSNPANLKDLED-DPRYTFVK 60
Query: 59 ADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVK 118
D+ E ++ VDGV H A+ V + + + GT +L S ++
Sbjct: 61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEV 120
Query: 119 RVVLTSS 125
R V S+
Sbjct: 121 RFVHVST 127
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVR-DPEDLSKVGFLWELNG--AEERLKIMKADL 61
+TG TGF+ A+L++AL H + +R D E+++ + LN +EE +++M +++
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNI 213
Query: 62 -LMEGSF---DEAI--QGVDGVFHTAS 82
++ G F D+ + + +D + H +
Sbjct: 214 EVIVGDFECMDDVVLPENMDTIIHAGA 240
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 8 GGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEGSF 67
G TG+I H+ KA LD GH VR+ S E E K A+ ++ GS
Sbjct: 11 GATGYIGRHVAKASLDLGHPTFLLVRESTASSN----SEKAQLLESFKASGAN-IVHGSI 65
Query: 68 D------EAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKR 119
D EA++ VD V T + I+ +N++ + K+ +VKR
Sbjct: 66 DDHASLVEAVKNVDVVISTVGSL---------------QIESQVNIIKAIKEVGTVKR 108
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 102/251 (40%), Gaps = 43/251 (17%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
VTGG GFI +H+V+ LL +G + V D K + + + DL +
Sbjct: 5 VTGGAGFIGSHIVEDLLARG--LEVAVLDNLATGK------RENVPKGVPFFRVDLRDK- 55
Query: 66 SFDEAIQGVDGVFHTASPVLVPY---DNNIQATLIDPCIKGTL------NVLSSCKKAKS 116
+GV+ F P V + +++ ++ DP + + N+L +C++
Sbjct: 56 ------EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQ-YG 108
Query: 117 VKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKD 176
V+++V S+ +I + E ++ + YA +K E +
Sbjct: 109 VEKLVFASTGGAI--------YGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQS 160
Query: 177 CGIDMVVVNPSFVVGPLLAPQPTSTLLLILA--MVKGLRGE-YPNTTVG-------FVHI 226
G+ V + V GP P + ++ I A ++KGL Y T G +V++
Sbjct: 161 YGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYV 220
Query: 227 DDVVGAHILAM 237
DV AH LA+
Sbjct: 221 GDVAEAHALAL 231
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 4 YCVTGGTGFIAAHLVKALLDKGHMV----RTTVRDPEDLSKVGFL-----WELNGAEERL 54
+ +TG GFI ++L++ LL V +L +V L W
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS------NF 83
Query: 55 KIMKADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKA 114
K ++ D+ + A GVD V H A+ VP N T I G LN+L + + A
Sbjct: 84 KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA 143
Query: 115 KSVKRVVLTSSCSS 128
K V+ +S S+
Sbjct: 144 K-VQSFTYAASSST 156
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 1 MPEYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELN--GAEERLKIMK 58
M + +TGG GFI + LV+ ++++ V + L+ G L L ER K
Sbjct: 1 MRKILITGGAGFIGSALVRYIINETSDAVVVV---DKLTYAGNLMSLAPVAQSERFAFEK 57
Query: 59 ADLLMEGSFDEAI--QGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKS 116
D+ D V H A+ V + A I+ I GT +L + A++
Sbjct: 58 VDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEA---ARA 114
Query: 117 VKRVVLTSSCSSIRYRH 133
+ S+ R+ H
Sbjct: 115 YWNALTEDKKSAFRFHH 131
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 37/173 (21%)
Query: 6 VTGGTGFIAAHLVKALLDKGH-MVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TG GFIA+H+ + L +GH ++ + + E +++ F E + + L++M+ L
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVD--LRVMENCL--- 88
Query: 65 GSFDEAIQGVDGVFHTASPV-----------LVPYDNN------IQATLIDPCIKGTLNV 107
+ +GVD VF+ A+ + ++ Y+N I+A I+ IK
Sbjct: 89 ----KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYA 143
Query: 108 LSSC----KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYN 156
S+C K V L S + DA + L + + CKHYN
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKL-----ATEELCKHYN 191
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 37/173 (21%)
Query: 6 VTGGTGFIAAHLVKALLDKGH-MVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TG GFIA+H+ + L +GH ++ + + E +++ F E + + L++M+ L
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVD--LRVMENCL--- 88
Query: 65 GSFDEAIQGVDGVFHTASPV-----------LVPYDNN------IQATLIDPCIKGTLNV 107
+ +GVD VF+ A+ + ++ Y+N I+A I+ IK
Sbjct: 89 ----KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYA 143
Query: 108 LSSC----KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYN 156
S+C K V L S + DA + L + + CKHYN
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKL-----ATEELCKHYN 191
>pdb|3G8Y|A Chain A, Crystal Structure Of A Putative Hydrolase (Bvu_4111) From
Bacteroides Vulgatus Atcc 8482 At 1.90 A Resolution
Length = 391
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 237 MEETRASGRLICSSSVAHWSPIIEMLKATYPSYPYESKCSKQE 279
++ R GRL+ + ++ H E LK T+P Y Y S S QE
Sbjct: 10 VKSDRGDGRLLSTYAIVH-----EXLKDTHPQYAYRSGXSAQE 47
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 37/173 (21%)
Query: 6 VTGGTGFIAAHLVKALLDKGH-MVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TG GFIA+H+ + L +GH ++ + + E +++ F E + + L++M+ L
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVD--LRVMENCL--- 88
Query: 65 GSFDEAIQGVDGVFHTASPV-----------LVPYDNN------IQATLIDPCIKGTLNV 107
+ +GVD VF+ A+ + ++ Y+N I+A I+ IK
Sbjct: 89 ----KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYA 143
Query: 108 LSSC----KKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYN 156
S+C K V L S + DA + L + + CKHYN
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERL-----ATEELCKHYN 191
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 47/178 (26%)
Query: 6 VTGGTGFIAAHLVKALLDKGH-MVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+TG GFIA+H+ + L +GH ++ + + E +++ F E + + L++M+ L
Sbjct: 34 ITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVD--LRVMENCL--- 88
Query: 65 GSFDEAIQGVDGVFHTASPV-----------LVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ +GVD VF+ A+ + ++ Y+N T+I + N++ + +
Sbjct: 89 ----KVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNN----TMI------SFNMIEAA-R 133
Query: 114 AKSVKRVVLTSS-CSSIRYRH-DAQQVSPLNESHW-SDP------------DYCKHYN 156
+KR SS C ++ + VS W ++P + CKHYN
Sbjct: 134 INGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYN 191
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
VTG G + + + L H VR LS + +L AE +I+ DL
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVR--------LSDIV---DLGAAEAHEEIVACDLADAQ 55
Query: 66 SFDEAIQGVDGVFHTAS-PVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLTS 124
+ + ++ DG+ H V P+++ +QA +I G N+ + + R+V S
Sbjct: 56 AVHDLVKDCDGIIHLGGVSVERPWNDILQANII-----GAYNLYEAARNLGK-PRIVFAS 109
Query: 125 SCSSIRY 131
S +I Y
Sbjct: 110 SNHTIGY 116
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 103/251 (41%), Gaps = 28/251 (11%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
+TGG G + ++L++ L +GH + V D K L + G L +++ + G
Sbjct: 25 ITGGAGCLGSNLIEHWLPQGHEI--LVIDNFATGKREVLPPVAG----LSVIEGSVTDAG 78
Query: 66 SFDEAIQGVDG--VFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVLT 123
+ A V H+A+ P D A ++G++NV + KA VKR L
Sbjct: 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT---NVQGSINVAKAASKA-GVKR--LL 132
Query: 124 SSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKEAWRIAKDCGIDMVV 183
+ +++ Y A P++ + +Y + EA+ + D + +V
Sbjct: 133 NFQTALCYGRPATVPIPIDSPTAP----------FTSYGISKTAGEAFLMMSD--VPVVS 180
Query: 184 VNPSFVVGPLLAPQPTSTLLLILAMVKGLRGEYPNTTVGFVHIDDVVGAHILAMEETRAS 243
+ + V GP LA P T L G + +T F+ + D + L+++E R +
Sbjct: 181 LRLANVTGPRLAIGPIPTFYKRLK--AGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPT 238
Query: 244 GRLICSSSVAH 254
G S+ H
Sbjct: 239 GVFNVSTGEGH 249
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+ GGTG+I H+VK L GH R + SK L E ++++
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLGHPTYVFTRP--NSSKTTLLDEFQSL--------GAIIVK 64
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVV 121
G DE + V+ L+ + + + L P I +L + K A ++KR +
Sbjct: 65 GELDEHEKLVE---------LMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 112
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+ GGTG+I H+VK L GH R + SK L E ++++
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLGHPTYVFTRP--NSSKTTLLDEFQSL--------GAIIVK 64
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVV 121
G DE + V+ L+ + + + L P I +L + K A ++KR +
Sbjct: 65 GELDEHEKLVE---------LMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 112
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 19/117 (16%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLME 64
+ GGTG+I H+VK L GH R + SK L E ++++
Sbjct: 11 LIFGGTGYIGNHMVKGSLKLGHPTYVFTRP--NSSKTTLLDEFQSL--------GAIIVK 60
Query: 65 GSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVV 121
G DE + V+ L+ + + + L P I +L + K A ++KR +
Sbjct: 61 GELDEHEKLVE---------LMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFL 108
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 26/207 (12%)
Query: 1 MPEYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELN--GAEERLKIMK 58
M + +TGG GF+ ++L L +G + V D +LS+ G L+ + + +
Sbjct: 1 MAKLLITGGCGFLGSNLASFALSQG--IDLIVFD--NLSRKGATDNLHWLSSLGNFEFVH 56
Query: 59 ADLLMEGSFDEAIQGV--DGVFHTASPVLVPYDNNIQATLIDPC------IKGTLNVLSS 110
D+ + I D FH A V + ++ +PC + GTLN+L +
Sbjct: 57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMT------TSIDNPCMDFEINVGGTLNLLEA 110
Query: 111 CKKAKSVKRVVLTSS------CSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKT 164
++ S ++ +S+ +Y + + +++ + D ++ Y +K
Sbjct: 111 VRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKG 170
Query: 165 IAEKEAWRIAKDCGIDMVVVNPSFVVG 191
A++ A+ G++ VV S + G
Sbjct: 171 AADQYMLDYARIFGLNTVVFRHSSMYG 197
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEE--RLKIMKADLLM 63
+TGG GFI + +V+ ++ + TV + + L+ G L L+ E R AD+
Sbjct: 5 ITGGAGFIGSAVVRHIIKN---TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 64 EGSFDEAIQGV--DGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
+ D V H A+ V A I+ I GT +L +K
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMV 28
+TGG GFI HL +AL+ G V
Sbjct: 12 ITGGAGFIGGHLARALVASGEEV 34
>pdb|4DI7|A Chain A, Structure Of A2-type Ketoreductase Of Modular Polyketide
Synthases
Length = 556
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 6 VTGGTGFIAAHLVKALLDKG--HMVRTTVRDPE 36
VTGG+G +A HL + L ++G H+V + R PE
Sbjct: 303 VTGGSGTLAPHLARWLAEQGAEHLVLVSRRGPE 335
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 189 VVGPL-LAPQPTSTLLLILAM----VKGLR-GEYPNTTVGFVHIDDVVGAHILAMEETRA 242
V GP + T++++L LA+ K ++ E+ FV+I+DV+ A++ AM+ ++
Sbjct: 189 VYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQKS 248
Query: 243 SGRLICSSSVAHWSPIIEML-------KATYPSYPY 271
+ S ++ I+ +L K TY PY
Sbjct: 249 GVYNVGYSQARSYNEIVSILKEHLGDFKVTYIKNPY 284
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 44/254 (17%)
Query: 4 YCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAE--------ERLK 55
+ +TG GFI ++L++ LL +V D G + L+ + R
Sbjct: 28 WLITGVAGFIGSNLLEKLLKLNQVVIGL-----DNFSTGHQYNLDEVKTLVSTEQWSRFC 82
Query: 56 IMKADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPC------IKGTLNVLS 109
++ D+ + ++ ++GVD V H A+ VP +++DP I G LN+L
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVP------RSIVDPITTNATNITGFLNILH 136
Query: 110 SCKKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKE 169
+ K A+ V+ +S S+ + P E + +P YA K + E
Sbjct: 137 AAKNAQ-VQSFTYAASSST----YGDHPALPKVEENIGNPLSP------YAVTKYVNEIY 185
Query: 170 AWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLL---ILAMVKG----LRGEYPNTTVG 222
A A+ G + + V G P ++ AM+KG + G+ T+
Sbjct: 186 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD-GETSRD 244
Query: 223 FVHIDDVVGAHILA 236
F +ID+V+ +IL+
Sbjct: 245 FCYIDNVIQMNILS 258
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 44/254 (17%)
Query: 4 YCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAE--------ERLK 55
+ +TG GFI ++L++ LL +V D G + L+ + R
Sbjct: 22 WLITGVAGFIGSNLLEKLLKLNQVVIGL-----DNFSTGHQYNLDEVKTLVSTEQWSRFC 76
Query: 56 IMKADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPC------IKGTLNVLS 109
++ D+ + ++ ++GVD V H A+ VP +++DP I G LN+L
Sbjct: 77 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVP------RSIVDPITTNATNITGFLNILH 130
Query: 110 SCKKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKE 169
+ K A+ V+ +S S+ + P E + +P YA K + E
Sbjct: 131 AAKNAQ-VQSFTYAASSST----YGDHPALPKVEENIGNPLSP------YAVTKYVNEIY 179
Query: 170 AWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLL---ILAMVKG----LRGEYPNTTVG 222
A A+ G + + V G P ++ AM+KG + G+ T+
Sbjct: 180 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD-GETSRD 238
Query: 223 FVHIDDVVGAHILA 236
F +ID+V+ +IL+
Sbjct: 239 FCYIDNVIQMNILS 252
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 44/254 (17%)
Query: 4 YCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAE--------ERLK 55
+ +TG GFI ++L++ LL +V D G + L+ + R
Sbjct: 28 WLITGVAGFIGSNLLEKLLKLNQVVIGL-----DNFSTGHQYNLDEVKTLVSTEQWSRFC 82
Query: 56 IMKADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPC------IKGTLNVLS 109
++ D+ + ++ ++GVD V H A+ VP +++DP I G LN+L
Sbjct: 83 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVP------RSIVDPITTNATNITGFLNILH 136
Query: 110 SCKKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKE 169
+ K A+ V+ +S S+ + P E + +P YA K + E
Sbjct: 137 AAKNAQ-VQSFTYAASSST----YGDHPALPKVEENIGNPLSP------YAVTKYVNEIY 185
Query: 170 AWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLL---ILAMVKG----LRGEYPNTTVG 222
A A+ G + + V G P ++ AM+KG + G+ T+
Sbjct: 186 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD-GETSRD 244
Query: 223 FVHIDDVVGAHILA 236
F +ID+V+ +IL+
Sbjct: 245 FCYIDNVIQMNILS 258
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 44/254 (17%)
Query: 4 YCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAE--------ERLK 55
+ +TG GFI ++L++ LL +V D G + L+ + R
Sbjct: 41 WLITGVAGFIGSNLLEKLLKLNQVVIGL-----DNFSTGHQYNLDEVKTLVSTEQWSRFC 95
Query: 56 IMKADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPC------IKGTLNVLS 109
++ D+ + ++ ++GVD V H A+ VP +++DP I G LN+L
Sbjct: 96 FIEGDIRDLTTCEQVMKGVDHVLHQAALGSVP------RSIVDPITTNATNITGFLNILH 149
Query: 110 SCKKAKSVKRVVLTSSCSSIRYRHDAQQVSPLNESHWSDPDYCKHYNLWYAYAKTIAEKE 169
+ K A+ V+ +S S+ + P E + +P YA K + E
Sbjct: 150 AAKNAQ-VQSFTYAASSST----YGDHPALPKVEENIGNPLSP------YAVTKYVNEIY 198
Query: 170 AWRIAKDCGIDMVVVNPSFVVGPLLAPQPTSTLLL---ILAMVKG----LRGEYPNTTVG 222
A A+ G + + V G P ++ AM+KG + G+ T+
Sbjct: 199 AQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGD-GETSRD 257
Query: 223 FVHIDDVVGAHILA 236
F +ID+V+ +IL+
Sbjct: 258 FCYIDNVIQMNILS 271
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMV---------RTTVRDP-EDLSKVGFLWELNGAEERL 54
+ GGTG+I H+VK L GH +TT+ D + L + EL+ E+ +
Sbjct: 15 LIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLV 74
Query: 55 KIMK 58
++MK
Sbjct: 75 ELMK 78
>pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp
pdb|1AE1|B Chain B, Tropinone Reductase-I Complex With Nadp
Length = 273
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
VTGG+ I +V+ L G V T R+ ++L + +W G + DLL
Sbjct: 26 VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSV--CDLLSRT 83
Query: 66 SFDEAIQGVDGVFHTASPVLV 86
D+ +Q V VF +LV
Sbjct: 84 ERDKLMQTVAHVFDGKLNILV 104
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVR-DPEDLSKVGFLWELN 48
+TG TGF+ A+L++AL H + +R D E+++ LN
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLN 117
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDP 35
V GGTGFI L + L +GH V R P
Sbjct: 4 LVGGGTGFIGTALTQLLNARGHEVTLVSRKP 34
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 25/251 (9%)
Query: 3 EYCVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLL 62
+Y V G TG + H +A+ GH + R + ++ +L E ++ A++L
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL------EPECRV--AEML 66
Query: 63 MEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKKAKSVKRVVL 122
+ A++G+DGV +A P + + T ++C +A+ V R++
Sbjct: 67 DHAGLERALRGLDGVIFSAG--YYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILY 123
Query: 123 TSSCSSIRYRHDAQQVSPLNESHWSD--PDYCKHYNLWYAYAKTIAEKEAWRIAKDCGID 180
S ++ RH Q P +E + D P Y L K +++A A++ G+
Sbjct: 124 VGSAYAMP-RHP--QGLPGHEGLFYDSLPSGKSSYVL----CKWALDEQAREQARN-GLP 175
Query: 181 MVVVNPSFVVGPL-LAPQPTSTLLLILAMVKGLRGEYPNTTVGFVHIDDVVGAHILAMEE 239
+V+ P V+G L + P +T +I A+ G Y + + ++A+E
Sbjct: 176 VVIGIPGMVLGELDIGP---TTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALER 232
Query: 240 TRASGRLICSS 250
R R + +
Sbjct: 233 GRIGERYLLTG 243
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNG 49
C+ G+G +A +LV+ L++KG +V T+ D G++ E NG
Sbjct: 242 CLVSGSGNVAQYLVEKLIEKGAIV-LTMSDSN-----GYILEPNG 280
>pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From
Arabidopsis Thaliana Gene At1g07440
pdb|2Q45|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Putative Tropinone Reductase From Arabidopsis Thaliana
Gene At1g07440
Length = 266
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 6 VTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGAEERLKIMKADLLMEG 65
VTGGT I +V+ G ++ T R+ +L++ W+ G + + A L E
Sbjct: 19 VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPE- 77
Query: 66 SFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCI 101
++ +Q V +F +L+ NN+ A P +
Sbjct: 78 -REKLMQTVSSMFGGKLDILI---NNLGAIRSKPTL 109
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 5 CVTGGTGFIAAHLVKALLDKGHMVRTTVRDPEDLSKVGFLWELNGA-EERLKIMKADLLM 63
VTGG GFI ++ V + + V TV D L+ G L +R++++ D+
Sbjct: 8 IVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK--LTYAGNKANLEAILGDRVELVVGDIAD 65
Query: 64 EGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSSCKK 113
D+ D + H A+ N + I GT +L + +K
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK 115
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 33/138 (23%)
Query: 6 VTGGTGFIAAHLVKALLDKG----HMVRTTVRDPE----DLSKVGFLWELNGAEERLKIM 57
V GG GF+ ++LVK LL+ G H+V + + D V F +E +
Sbjct: 37 VVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRF------SETSI--- 87
Query: 58 KADLLMEGSFDEAIQGVDGVFHTASPVLVPYDNNIQATLIDPCIKGTLNVLSS------C 111
D L+ DE D VFH A+ Y N Q+++ DP N L++
Sbjct: 88 TDDALLASLQDE----YDYVFHLAT-----YHGN-QSSIHDPLADHENNTLTTLKLYERL 137
Query: 112 KKAKSVKRVVLTSSCSSI 129
K K +K+VV +++ SI
Sbjct: 138 KHFKRLKKVVYSAAGCSI 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,408,185
Number of Sequences: 62578
Number of extensions: 368509
Number of successful extensions: 967
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 81
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)