Query 039050
Match_columns 112
No_of_seqs 124 out of 1128
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 99.7 1.5E-17 3.2E-22 142.8 7.7 61 49-110 127-193 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 99.7 4.1E-17 8.9E-22 139.8 9.8 84 27-111 65-163 (559)
3 COG0025 NhaP NhaP-type Na+/H+ 99.6 2.2E-15 4.8E-20 125.4 8.2 84 27-111 59-150 (429)
4 TIGR00831 a_cpa1 Na+/H+ antipo 99.5 4.3E-14 9.4E-19 119.9 9.4 82 28-110 49-137 (525)
5 KOG1966 Sodium/hydrogen exchan 99.4 3.9E-13 8.5E-18 116.5 5.3 83 27-110 98-194 (670)
6 TIGR00844 c_cpa1 na(+)/h(+) an 99.1 3.2E-10 6.9E-15 101.2 9.8 86 25-111 75-165 (810)
7 PRK05326 potassium/proton anti 99.0 1.1E-09 2.4E-14 93.3 8.7 83 27-110 59-150 (562)
8 COG3263 NhaP-type Na+/H+ and K 99.0 6.6E-10 1.4E-14 94.6 6.4 77 33-110 66-149 (574)
9 TIGR00932 2a37 transporter, mo 98.1 1.8E-05 3.9E-10 61.2 8.8 80 28-108 44-130 (273)
10 PF00999 Na_H_Exchanger: Sodiu 97.6 1.5E-05 3.3E-10 63.7 0.7 85 25-110 46-141 (380)
11 KOG4505 Na+/H+ antiporter [Ino 97.4 0.00073 1.6E-08 56.8 7.9 91 21-111 71-166 (467)
12 PRK03659 glutathione-regulated 97.0 0.0043 9.3E-08 53.9 8.6 91 17-109 52-143 (601)
13 PRK10669 putative cation:proto 96.7 0.012 2.6E-07 50.3 8.6 88 19-107 55-142 (558)
14 PRK03562 glutathione-regulated 95.8 0.055 1.2E-06 47.4 8.5 90 16-107 51-141 (621)
15 COG0475 KefB Kef-type K+ trans 91.4 1.3 2.9E-05 36.7 8.1 89 18-108 55-146 (397)
16 PLN03159 cation/H(+) antiporte 80.9 11 0.00025 34.4 8.6 87 20-108 103-196 (832)
17 PF03956 DUF340: Membrane prot 75.2 21 0.00045 27.1 7.4 37 49-87 56-92 (191)
18 COG2431 Predicted membrane pro 71.6 15 0.00033 30.2 6.1 51 35-87 138-199 (297)
19 COG2985 Predicted permease [Ge 54.9 52 0.0011 29.2 6.7 75 26-104 429-510 (544)
20 PF05884 ZYG-11_interact: Inte 44.0 1.8E+02 0.004 24.0 9.0 74 26-99 107-199 (299)
21 PRK01024 Na(+)-translocating N 44.0 25 0.00055 30.9 3.1 18 80-97 427-444 (503)
22 COG0805 TatC Sec-independent p 43.6 17 0.00036 29.1 1.9 23 77-99 199-221 (255)
23 PRK05349 Na(+)-translocating N 43.0 24 0.00051 30.2 2.8 17 80-96 324-340 (405)
24 PRK10921 twin-arginine protein 42.4 25 0.00055 27.8 2.7 22 78-99 196-217 (258)
25 PRK00816 rnfD electron transpo 42.2 23 0.00049 29.6 2.5 18 79-96 274-291 (350)
26 PF05982 DUF897: Domain of unk 40.7 1.5E+02 0.0033 24.7 7.1 70 31-102 213-287 (327)
27 TIGR03802 Asp_Ala_antiprt aspa 39.2 2.1E+02 0.0046 25.1 8.1 78 28-107 61-146 (562)
28 TIGR00945 tatC Twin arginine t 38.7 32 0.0007 26.2 2.7 23 78-100 185-207 (215)
29 TIGR01937 nqrB NADH:ubiquinone 37.2 34 0.00074 29.3 2.9 17 80-96 338-354 (413)
30 PF07760 DUF1616: Protein of u 35.8 2.1E+02 0.0046 22.6 7.1 84 26-111 28-116 (287)
31 PF00902 TatC: Sec-independent 35.1 37 0.0008 25.7 2.5 25 76-100 188-212 (215)
32 COG2855 Predicted membrane pro 34.1 2.3E+02 0.005 23.7 7.2 46 60-105 102-147 (334)
33 CHL00182 tatC Sec-independent 33.7 39 0.00084 26.6 2.5 24 77-100 205-229 (249)
34 TIGR02454 CbiQ_TIGR cobalt ABC 32.6 1.9E+02 0.0041 20.8 7.2 22 89-110 111-132 (198)
35 TIGR01912 TatC-Arch Twin argin 32.3 46 0.001 25.9 2.7 22 79-100 195-217 (237)
36 TIGR01946 rnfD electron transp 30.2 43 0.00093 27.7 2.3 17 80-96 254-270 (327)
37 COG4651 RosB Kef-type K+ trans 29.2 1.2E+02 0.0025 25.9 4.7 88 17-105 53-140 (408)
38 PF06645 SPC12: Microsomal sig 27.8 1.7E+02 0.0038 18.9 6.4 43 21-63 6-48 (76)
39 PLN00151 potassium transporter 26.6 1.9E+02 0.004 27.3 5.9 76 28-103 473-550 (852)
40 PRK03659 glutathione-regulated 23.6 5E+02 0.011 22.7 9.3 27 70-96 311-337 (601)
41 PRK06007 fliF flagellar MS-rin 23.4 1.1E+02 0.0023 26.9 3.7 30 81-111 50-79 (542)
42 KOG1965 Sodium/hydrogen exchan 23.0 35 0.00076 30.5 0.6 19 28-46 99-117 (575)
43 PRK03562 glutathione-regulated 22.5 5.4E+02 0.012 22.7 8.3 28 69-96 313-340 (621)
44 COG3671 Predicted membrane pro 22.2 3.1E+02 0.0068 19.9 5.8 29 49-78 71-99 (125)
45 PRK12460 2-keto-3-deoxyglucona 21.6 2.2E+02 0.0049 23.5 5.0 28 68-95 236-273 (312)
46 PF06826 Asp-Al_Ex: Predicted 21.5 3.4E+02 0.0074 20.1 9.3 62 27-89 56-125 (169)
47 COG4589 Predicted CDP-diglycer 21.1 1.5E+02 0.0032 24.5 3.7 52 55-107 214-268 (303)
48 PF04015 DUF362: Domain of unk 20.9 44 0.00095 24.6 0.7 18 84-101 185-202 (206)
49 PLN03159 cation/H(+) antiporte 20.6 6.8E+02 0.015 23.1 9.2 26 71-96 371-396 (832)
50 PLN00149 potassium transporter 20.2 2.7E+02 0.006 25.9 5.7 76 28-103 400-477 (779)
51 PF03116 NQR2_RnfD_RnfE: NQR2, 20.2 4E+02 0.0086 21.7 6.2 17 80-96 239-255 (313)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=142.84 Aligned_cols=61 Identities=39% Similarity=0.591 Sum_probs=56.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHH------hccchHHHHHhhhhccCccHHHHHHHhhhCCCCCcc
Q 039050 49 LIVGALANISNTETNISYLGGVMFVM------YRLPFVECLMFGALISATDPITILYIFQGENVDNIE 110 (112)
Q Consensus 49 ~~i~~la~~g~v~iS~~~vg~~~~~~------~~l~l~~allfGAiiS~TDPVaVlaIf~~~~vp~~~ 110 (112)
..+..++++| ++||++++|..+|++ .+++|.+|++|||++|+||||+|++|||++++++++
T Consensus 127 ~si~~fa~~G-t~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~vd~~L 193 (575)
T KOG1965|consen 127 GSILLFAIFG-TFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPKL 193 (575)
T ss_pred HHHHHhhhcc-eeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCCCcce
Confidence 6677789999 999999999999987 389999999999999999999999999999998775
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.71 E-value=4.1e-17 Score=139.79 Aligned_cols=84 Identities=20% Similarity=0.337 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh--------ccchHHHHHhhhhccC
Q 039050 27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY--------RLPFVECLMFGALISA 91 (112)
Q Consensus 27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~--------~l~l~~allfGAiiS~ 91 (112)
-++|+.++||+++|+.||.+++ ++++.+|++| +++|++++|..+|++. +++|..|++|||++||
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~G-vlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSa 143 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVG-TLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISA 143 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcC
Confidence 4789999999999999997765 8899999999 9999999999999753 5699999999999999
Q ss_pred ccHHHHHHHhhhCCCCCccc
Q 039050 92 TDPITILYIFQGENVDNIEE 111 (112)
Q Consensus 92 TDPVaVlaIf~~~~vp~~~~ 111 (112)
||||+|++++|+.++|+++.
T Consensus 144 TDPVAVlai~~~~~v~~~L~ 163 (559)
T TIGR00840 144 VDPVAVLAVFEEYHVNEKLY 163 (559)
T ss_pred CchHHHHHHHHhcCCCcchh
Confidence 99999999999999999874
No 3
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.2e-15 Score=125.35 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHhhhhccCccHHHHH
Q 039050 27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY-RLPFVECLMFGALISATDPITIL 98 (112)
Q Consensus 27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~-~l~l~~allfGAiiS~TDPVaVl 98 (112)
-++++.+++|++.|+.|+..++ +++..+++.+ +++|++++|+..||+. ++||..|+++||++||||||++.
T Consensus 59 ~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~-v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 59 PELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPL-VLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred hHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 3556699999999999987654 8888999999 9999999999999987 89999999999999999999999
Q ss_pred HHhhhCCCCCccc
Q 039050 99 YIFQGENVDNIEE 111 (112)
Q Consensus 99 aIf~~~~vp~~~~ 111 (112)
+++|+.++|||++
T Consensus 138 ~i~~~~~vp~ri~ 150 (429)
T COG0025 138 PIFKRVRVPKRIR 150 (429)
T ss_pred HHHhcCCCCHHHH
Confidence 9999999999975
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.52 E-value=4.3e-14 Score=119.92 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHH
Q 039050 28 GILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYI 100 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaI 100 (112)
++++.+++|++.|..|+.++. +++..++++| +++++..+|..+||+.++||..|+++||++|||||+++.++
T Consensus 49 ~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~-vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~i 127 (525)
T TIGR00831 49 EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL-VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGT 127 (525)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHH
Confidence 356789999999999976554 6888899999 99999999999999889999999999999999999999999
Q ss_pred hhhCCCCCcc
Q 039050 101 FQGENVDNIE 110 (112)
Q Consensus 101 f~~~~vp~~~ 110 (112)
+|+.++|+++
T Consensus 128 l~~~~~p~rl 137 (525)
T TIGR00831 128 FKSIRAPKKL 137 (525)
T ss_pred HhcCCCCHHH
Confidence 9999999875
No 5
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.38 E-value=3.9e-13 Score=116.53 Aligned_cols=83 Identities=20% Similarity=0.399 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh-----c--cchHHHHHhhhhccCc
Q 039050 27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY-----R--LPFVECLMFGALISAT 92 (112)
Q Consensus 27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~-----~--l~l~~allfGAiiS~T 92 (112)
-..||+.+|||+.+.+||.+++ ..|+++|++| ++..++.+|..+|.+. + .++.+-++||+++|+.
T Consensus 98 s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvG-Ti~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAV 176 (670)
T KOG1966|consen 98 SDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVG-TIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAV 176 (670)
T ss_pred ccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhc
Confidence 3578899999999999999987 7899999999 9999999999988763 5 6699999999999999
Q ss_pred cHHHHHHHhhhCCCCCcc
Q 039050 93 DPITILYIFQGENVDNIE 110 (112)
Q Consensus 93 DPVaVlaIf~~~~vp~~~ 110 (112)
|||||+++|+|+++++.+
T Consensus 177 DPVAVLaVFEEihVNe~L 194 (670)
T KOG1966|consen 177 DPVAVLAVFEEIHVNEVL 194 (670)
T ss_pred CchhhhhhhhhhccccEE
Confidence 999999999999999865
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.12 E-value=3.2e-10 Score=101.19 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHH-hccchHHHHHhhhhccCccHHHHHHHhh
Q 039050 25 AGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVM-YRLPFVECLMFGALISATDPITILYIFQ 102 (112)
Q Consensus 25 ~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~-~~l~l~~allfGAiiS~TDPVaVlaIf~ 102 (112)
+++.+.+.+|--.+-+..++..++ ..+..+++++ +.++.+++++++||+ .+++|..|+++||+++|||||.+.+++|
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~-M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV-MTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHh
Confidence 333343333433333334444444 4456677788 999999999999988 5999999999999999999999999999
Q ss_pred ---hCCCCCccc
Q 039050 103 ---GENVDNIEE 111 (112)
Q Consensus 103 ---~~~vp~~~~ 111 (112)
+.++|++++
T Consensus 154 g~~~~rvP~rLR 165 (810)
T TIGR00844 154 GTFAQKVPGHLR 165 (810)
T ss_pred ccccccCChHHH
Confidence 667888764
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.02 E-value=1.1e-09 Score=93.27 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHH
Q 039050 27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILY 99 (112)
Q Consensus 27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVla 99 (112)
...+-.+.++.+.|..|+.++. +++..++++| +++++..+|...+++++++|..|+++||++|+|||++|.+
T Consensus 59 ~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~g-v~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~ 137 (562)
T PRK05326 59 AYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLG-VLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFS 137 (562)
T ss_pred HHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHH
Confidence 3556678888899998865543 7778889999 9999999999999999999999999999999999999999
Q ss_pred HhhhCC--CCCcc
Q 039050 100 IFQGEN--VDNIE 110 (112)
Q Consensus 100 If~~~~--vp~~~ 110 (112)
++|+.| +++++
T Consensus 138 iL~~~~l~l~~~v 150 (562)
T PRK05326 138 LLRGKGLNLKERV 150 (562)
T ss_pred HHhccCCCcchhH
Confidence 999999 77764
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.00 E-value=6.6e-10 Score=94.57 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhhhCC
Q 039050 33 IMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGEN 105 (112)
Q Consensus 33 i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~~~~ 105 (112)
+.|-.++|.-|+..+- ++.+.+|++| |++|+..+|...+|+++++|.+++++||++.+||+.||++++++.+
T Consensus 66 lALaiILfdgG~~T~lss~r~a~~palsLATlG-Vl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n 144 (574)
T COG3263 66 LALAIILFDGGFGTQLSSFRVAAGPALSLATLG-VLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN 144 (574)
T ss_pred HHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence 3445555665543332 8889999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q 039050 106 VDNIE 110 (112)
Q Consensus 106 vp~~~ 110 (112)
+++|.
T Consensus 145 l~erv 149 (574)
T COG3263 145 LNERV 149 (574)
T ss_pred hhhhh
Confidence 88874
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=98.13 E-value=1.8e-05 Score=61.21 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh------h-hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHH
Q 039050 28 GILLQIMMLVLSFVLGHVLR------R-LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYI 100 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~~------~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaI 100 (112)
+.+-.+.+..+.|..|+..+ . +.....+..+ +.++.+.+|...+++.++++..|+++|+++++||+..+..+
T Consensus 44 ~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~i 122 (273)
T TIGR00932 44 NHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ-VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQV 122 (273)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444555555666664332 2 4556667777 77876777887778889999999999999999999999999
Q ss_pred hhhCCCCC
Q 039050 101 FQGENVDN 108 (112)
Q Consensus 101 f~~~~vp~ 108 (112)
+++.|..+
T Consensus 123 l~~~~~~~ 130 (273)
T TIGR00932 123 LKERGLLK 130 (273)
T ss_pred HHHcCccc
Confidence 99998643
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=97.63 E-value=1.5e-05 Score=63.67 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHH---HhccchHHHHHhhhhccCccH
Q 039050 25 AGVGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFV---MYRLPFVECLMFGALISATDP 94 (112)
Q Consensus 25 ~~~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~---~~~l~l~~allfGAiiS~TDP 94 (112)
...+.+..+.++.+.|..|+.++. +....++..+ +.++...++...++ ..|+++.+++++|+++++|||
T Consensus 46 ~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 46 PSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVG-FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp --S-SSHHHHS--SSHHHHTTGGGG--------------------------------------------TTHHHHTT--H
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccce-eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 455667788888888888865543 5566667777 77776666777775 579999999999999999999
Q ss_pred HHHHHHhh-hCCCCCcc
Q 039050 95 ITILYIFQ-GENVDNIE 110 (112)
Q Consensus 95 VaVlaIf~-~~~vp~~~ 110 (112)
+.+..+++ +.+.|+++
T Consensus 125 ~~v~~~l~~~~~~~~~~ 141 (380)
T PF00999_consen 125 AIVSPVLKELGLLPSRL 141 (380)
T ss_dssp HHHHHHH-HHHT-SSTT
T ss_pred cchhhhhhhhhcccccc
Confidence 99999994 45556654
No 11
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00073 Score=56.77 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHhhhhccCccHHHHHH
Q 039050 21 EQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMY-RLPFVECLMFGALISATDPITILY 99 (112)
Q Consensus 21 ~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~-~l~l~~allfGAiiS~TDPVaVla 99 (112)
-.+.+++-+.+.+|--+.-...+|.+++|.......+..+.+-..+.+..+|.+. ++++..+++++|-+.||||+-..+
T Consensus 71 t~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsss 150 (467)
T KOG4505|consen 71 TYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSS 150 (467)
T ss_pred hhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHH
Confidence 3456788899999999999999999999665443332325666777888888877 999999999999999999999999
Q ss_pred Hhhh----CCCCCccc
Q 039050 100 IFQG----ENVDNIEE 111 (112)
Q Consensus 100 If~~----~~vp~~~~ 111 (112)
|-.+ .++|+++|
T Consensus 151 IV~~g~~akrvPeriR 166 (467)
T KOG4505|consen 151 IVGGGKFAKRVPERIR 166 (467)
T ss_pred HhcCchHhhhChHHHH
Confidence 9874 34666654
No 12
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.99 E-value=0.0043 Score=53.90 Aligned_cols=91 Identities=8% Similarity=0.192 Sum_probs=67.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHH
Q 039050 17 SPAKEQQAAGVGILLQIMMLVLSFVLGHVLR-RLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPI 95 (112)
Q Consensus 17 ~~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~-~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPV 95 (112)
+.++.++.+++.+.+++|+-.+-+......+ +..+..++..+ +.++..+.+...++ .|++|..++++|..++.|+++
T Consensus 52 ~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~-v~~t~~~~~~~~~~-~g~~~~~a~~~g~~la~SSTa 129 (601)
T PRK03659 52 DVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQ-VLLSAAVLAGLLML-TDFSWQAAVVGGIGLAMSSTA 129 (601)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHH
Confidence 3456777778887777777766555554333 24555666677 77777666665554 699999999999999999999
Q ss_pred HHHHHhhhCCCCCc
Q 039050 96 TILYIFQGENVDNI 109 (112)
Q Consensus 96 aVlaIf~~~~vp~~ 109 (112)
-+..++++.|..+.
T Consensus 130 iv~~iL~e~~~~~t 143 (601)
T PRK03659 130 MALQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHcccccC
Confidence 99999999987654
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.65 E-value=0.012 Score=50.30 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHH
Q 039050 19 AKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITIL 98 (112)
Q Consensus 19 ~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVl 98 (112)
+..+..+++.+.++.|+-.+-+...+..+.+.......+..+++ +..++..+++.+++++..++.+|+++|.|.+..+.
T Consensus 55 ~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~ 133 (558)
T PRK10669 55 KLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAV-ATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLL 133 (558)
T ss_pred HHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777776666666555544433333333222221333 44566666777899999999999999999999999
Q ss_pred HHhhhCCCC
Q 039050 99 YIFQGENVD 107 (112)
Q Consensus 99 aIf~~~~vp 107 (112)
.++++.|.-
T Consensus 134 ~~L~e~~~l 142 (558)
T PRK10669 134 RALEERQLI 142 (558)
T ss_pred HHHHhcCcc
Confidence 999998853
No 14
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.84 E-value=0.055 Score=47.39 Aligned_cols=90 Identities=11% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccH
Q 039050 16 GSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDP 94 (112)
Q Consensus 16 ~~~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDP 94 (112)
.+.++.++.+++.+.+++|+-.+-+......+. ..+..++... +.++....+ .+.+++|++|..++++|.+++.|.+
T Consensus 51 ~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~q-v~~~~~~~~-~~~~~~g~~~~~al~ig~~la~SSt 128 (621)
T PRK03562 51 TDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQ-MVACGGLLG-LFCMLLGLRWQVALLIGLGLALSST 128 (621)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 345567777788887777777665555543332 3344455555 566555444 3445579999999999999999999
Q ss_pred HHHHHHhhhCCCC
Q 039050 95 ITILYIFQGENVD 107 (112)
Q Consensus 95 VaVlaIf~~~~vp 107 (112)
.-++.++++.+.-
T Consensus 129 aiv~~~L~e~~~l 141 (621)
T PRK03562 129 AIAMQAMNERNLM 141 (621)
T ss_pred HHHHHHHHHhccc
Confidence 9899999988753
No 15
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=91.44 E-value=1.3 Score=36.75 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh-HHHHHhHHHHHHHHHHHHHHHHH-HhccchHHHHHhhhhccCccH
Q 039050 18 PAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-LI-VGALANISNTETNISYLGGVMFV-MYRLPFVECLMFGALISATDP 94 (112)
Q Consensus 18 ~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~-i~~la~~g~v~iS~~~vg~~~~~-~~~l~l~~allfGAiiS~TDP 94 (112)
.+..+..++..+.++.|+-.+=+...+..|. +. ....+..+ +.. ....+...+. ..++++..++..|++++.|..
T Consensus 55 ~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~ 132 (397)
T COG0475 55 SEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVG-LTA-PFLLGLLLLLGILGLSLIAALFLGAALALSST 132 (397)
T ss_pred hHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHH-HHH-HHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3444447888888777776665555554443 22 22223333 222 2233332222 479999999999999999999
Q ss_pred HHHHHHhhhCCCCC
Q 039050 95 ITILYIFQGENVDN 108 (112)
Q Consensus 95 VaVlaIf~~~~vp~ 108 (112)
.-+..+++|.|.-+
T Consensus 133 ~i~~~iL~e~~~~~ 146 (397)
T COG0475 133 AIVLKILMELGLLK 146 (397)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999977654
No 16
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=80.89 E-value=11 Score=34.37 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHhcc------chHHHHHhhhhccCc
Q 039050 20 KEQQAAGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVMYRL------PFVECLMFGALISAT 92 (112)
Q Consensus 20 ~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l------~l~~allfGAiiS~T 92 (112)
..+..+.+.+.++.|+-.+=+......|. ......+..+ +.+. +++|....++++. ....++.+|..+|.|
T Consensus 103 ~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~-~ilp-f~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~T 180 (832)
T PLN03159 103 VLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAG-MALP-FCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVT 180 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHH-HHHH-HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 45666777777777777766666655544 3344444444 4333 3334333332221 123467899999999
Q ss_pred cHHHHHHHhhhCCCCC
Q 039050 93 DPITILYIFQGENVDN 108 (112)
Q Consensus 93 DPVaVlaIf~~~~vp~ 108 (112)
...-+..+++++|.-+
T Consensus 181 s~pVv~riL~Elkll~ 196 (832)
T PLN03159 181 AFPVLARILAEIKLIN 196 (832)
T ss_pred hHHHHHHHHHHcCccc
Confidence 8777889999988643
No 17
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=75.15 E-value=21 Score=27.13 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=26.6
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhh
Q 039050 49 LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGA 87 (112)
Q Consensus 49 ~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGA 87 (112)
+..+.+. +. +.+.++..|.+.+.+.++++.+|++.|+
T Consensus 56 ~~~Llip-l~-tIlGSllgg~l~~~ll~~~~~~~lav~s 92 (191)
T PF03956_consen 56 KRALLIP-LA-TILGSLLGGLLASLLLGLSLKESLAVAS 92 (191)
T ss_pred HHHHHHH-HH-HHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 3444433 34 5666777788888888999999998876
No 18
>COG2431 Predicted membrane protein [Function unknown]
Probab=71.58 E-value=15 Score=30.15 Aligned_cols=51 Identities=22% Similarity=0.172 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhhhh-----------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhh
Q 039050 35 MLVLSFVLGHVLRR-----------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGA 87 (112)
Q Consensus 35 Lp~l~f~~~~~~~~-----------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGA 87 (112)
|-.++|..|+++++ ...+.++. - +.+++.+-|.+..++.++|+..++.+++
T Consensus 138 L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~-i-~ilssliGG~iaa~~l~lpl~~~lAmas 199 (297)
T COG2431 138 LYLLLFLIGIQLGNSGISLRQVLLNKRGLILAF-I-TLLSSLIGGLIAAFLLDLPLTTGLAMAS 199 (297)
T ss_pred HHHHHHHHHHHhccccchhhhHHhccchHHHHH-H-HHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 34456777777774 22233333 2 5777788888888888888888777654
No 19
>COG2985 Predicted permease [General function prediction only]
Probab=54.91 E-value=52 Score=29.22 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhc-cCccHHHHH
Q 039050 26 GVGILLQIMMLVLSFVLGHVLRR------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALI-SATDPITIL 98 (112)
Q Consensus 26 ~~~lfl~i~Lp~l~f~~~~~~~~------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAii-S~TDPVaVl 98 (112)
--++.+.+||-..-..+|-.+++ ..+...+.+- ++++.+..+.+.+++.+++|.. ++|++. |-|||-+.
T Consensus 429 lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~li-t~vp~i~~~llg~~v~kmn~~~--l~G~laGs~T~ppaL- 504 (544)
T COG2985 429 LRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALV-TLVPVIIVFLLGRYVLKMNWLL--LCGALAGSMTDPPAL- 504 (544)
T ss_pred HHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHH-HHHHHHHHHHHHHHHHhccHHH--HhhHHhcCCCChHHH-
Confidence 34667777777777777766655 3333444444 5666667777888888888864 678777 67899874
Q ss_pred HHhhhC
Q 039050 99 YIFQGE 104 (112)
Q Consensus 99 aIf~~~ 104 (112)
+..++.
T Consensus 505 a~and~ 510 (544)
T COG2985 505 AFANDA 510 (544)
T ss_pred HHHhhc
Confidence 555543
No 20
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=43.97 E-value=1.8e+02 Score=23.96 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHh---------------ccchHHHHHhhhhcc
Q 039050 26 GVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMY---------------RLPFVECLMFGALIS 90 (112)
Q Consensus 26 ~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~---------------~l~l~~allfGAiiS 90 (112)
.++.++++-.-...+.-||.++.+.-..+..+|-++++.+++-...|+.+ ......+.+.|+.+|
T Consensus 107 ~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls 186 (299)
T PF05884_consen 107 SWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLS 186 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444443333344555788777555555555556666666666655542 335677888898886
Q ss_pred C----ccHHHHHH
Q 039050 91 A----TDPITILY 99 (112)
Q Consensus 91 ~----TDPVaVla 99 (112)
. .+|..++.
T Consensus 187 ~~~l~sePf~~LT 199 (299)
T PF05884_consen 187 HLYLSSEPFIALT 199 (299)
T ss_pred cccccCCcHHHHH
Confidence 4 36766654
No 21
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=43.95 E-value=25 Score=30.86 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=15.9
Q ss_pred HHHHHhhhhccCccHHHH
Q 039050 80 VECLMFGALISATDPITI 97 (112)
Q Consensus 80 ~~allfGAiiS~TDPVaV 97 (112)
..+++|||..=+||||+.
T Consensus 427 sGGlmfGAfFMATDPVTS 444 (503)
T PRK01024 427 LGGLAFGLVFMATDPVSS 444 (503)
T ss_pred HHHHHHHHHhhhcCCCCC
Confidence 578999999999999973
No 22
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=43.55 E-value=17 Score=29.10 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=19.0
Q ss_pred cchHHHHHhhhhccCccHHHHHH
Q 039050 77 LPFVECLMFGALISATDPITILY 99 (112)
Q Consensus 77 l~l~~allfGAiiS~TDPVaVla 99 (112)
.-+..++.+||+++|+||++-+.
T Consensus 199 ~~iv~~fViaaviTPpd~~sq~l 221 (255)
T COG0805 199 YAIVAAFVIAAIITPPDVLSQIL 221 (255)
T ss_pred eeeehHHHHHHHcCCCchHHHHH
Confidence 45578999999999999987543
No 23
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=42.99 E-value=24 Score=30.22 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.6
Q ss_pred HHHHHhhhhccCccHHH
Q 039050 80 VECLMFGALISATDPIT 96 (112)
Q Consensus 80 ~~allfGAiiS~TDPVa 96 (112)
..+++|||..=+||||+
T Consensus 324 sGgl~fGAfFMATDpVT 340 (405)
T PRK05349 324 LGGFAFGMVFMATDPVS 340 (405)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 57899999999999997
No 24
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=42.39 E-value=25 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=17.4
Q ss_pred chHHHHHhhhhccCccHHHHHH
Q 039050 78 PFVECLMFGALISATDPITILY 99 (112)
Q Consensus 78 ~l~~allfGAiiS~TDPVaVla 99 (112)
-+...+++||+++|.|+++-+-
T Consensus 196 ~~v~~~iiaAiiTPpD~isq~l 217 (258)
T PRK10921 196 VLVGAFVVGMLLTPPDVFSQTL 217 (258)
T ss_pred HhHHHHHHHHHcCCCcHHHHHH
Confidence 3356789999999999998543
No 25
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=42.16 E-value=23 Score=29.61 Aligned_cols=18 Identities=50% Similarity=0.809 Sum_probs=15.9
Q ss_pred hHHHHHhhhhccCccHHH
Q 039050 79 FVECLMFGALISATDPIT 96 (112)
Q Consensus 79 l~~allfGAiiS~TDPVa 96 (112)
+..+++|||..=+||||+
T Consensus 274 lsGg~~lGAfFmATDpvT 291 (350)
T PRK00816 274 FSGATMLGAFFIATDPVT 291 (350)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 357899999999999997
No 26
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=40.73 E-value=1.5e+02 Score=24.69 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhhh-----hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhh
Q 039050 31 LQIMMLVLSFVLGHVLRR-----LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQ 102 (112)
Q Consensus 31 l~i~Lp~l~f~~~~~~~~-----~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~ 102 (112)
+++||.-.-..++-.++. +....++.+. .+-...+|....++.|++...+++++.+-++-.=+++=+.+|
T Consensus 213 L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~--Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR 287 (327)
T PF05982_consen 213 LCLFLLEMGLVAARRLRDLRKVGWFLIAFGILM--PLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMR 287 (327)
T ss_pred HHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHH
Confidence 344555555555544433 4444555544 333345566666778999999999999887766555544444
No 27
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=39.19 E-value=2.1e+02 Score=25.06 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhh----hhhh--hhHHHHHhHHHHHHHHHHHHHHHHHHhcc--chHHHHHhhhhccCccHHHHHH
Q 039050 28 GILLQIMMLVLSFVLGH----VLRR--LIVGALANISNTETNISYLGGVMFVMYRL--PFVECLMFGALISATDPITILY 99 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~----~~~~--~~i~~la~~g~v~iS~~~vg~~~~~~~~l--~l~~allfGAiiS~TDPVaVla 99 (112)
++++.+|+-++-+..|- .+|| ++...++.+- .++...+...+++++++ +....+.-||+-++.-=.+...
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~--~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~ 138 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF--AVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGD 138 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHH
Confidence 36666666666666652 3444 5666666433 44456666667777766 5567788888876544334444
Q ss_pred HhhhCCCC
Q 039050 100 IFQGENVD 107 (112)
Q Consensus 100 If~~~~vp 107 (112)
..++.+.+
T Consensus 139 a~~~~~~~ 146 (562)
T TIGR03802 139 AIEKLGLS 146 (562)
T ss_pred HHHhcCCC
Confidence 44555543
No 28
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=38.68 E-value=32 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=18.7
Q ss_pred chHHHHHhhhhccCccHHHHHHH
Q 039050 78 PFVECLMFGALISATDPITILYI 100 (112)
Q Consensus 78 ~l~~allfGAiiS~TDPVaVlaI 100 (112)
-....+.+||+++|+|+++-+-+
T Consensus 185 ~~~~~~i~aa~iTPpD~~sq~~l 207 (215)
T TIGR00945 185 VIVGAFVIGAILTPPDPLSQILL 207 (215)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHH
Confidence 44678999999999999986544
No 29
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=37.23 E-value=34 Score=29.32 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=15.7
Q ss_pred HHHHHhhhhccCccHHH
Q 039050 80 VECLMFGALISATDPIT 96 (112)
Q Consensus 80 ~~allfGAiiS~TDPVa 96 (112)
..+++|||..=+||||+
T Consensus 338 sGg~mfGAfFmATDpVT 354 (413)
T TIGR01937 338 LGGFAFGLVFMATDPVS 354 (413)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 58899999999999997
No 30
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=35.85 E-value=2.1e+02 Score=22.60 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh-----hhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHH
Q 039050 26 GVGILLQIMMLVLSFVLGHV-----LRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYI 100 (112)
Q Consensus 26 ~~~lfl~i~Lp~l~f~~~~~-----~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaI 100 (112)
...+.+.+|+|.-.+..... +....-..+++ |.-+.....+|..+.+.. +++...-+..++-.-|=-.+.++.
T Consensus 28 ~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~-glSi~~~~~~g~~l~~~~-~~i~~~~i~~~l~~~t~~~~~~a~ 105 (287)
T PF07760_consen 28 ILGFPFVLFLPGYALVAALFPRKHDLDGIERLALSV-GLSIAIVPLIGLLLNYTP-WGIRLIPILISLSIFTLVLSIIAY 105 (287)
T ss_pred HHHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHhcc-CCcchhHHHHHHHHHHHHHHHHHH
Confidence 45666667777766554431 12222334443 312333345566666543 233333333344555556788999
Q ss_pred hhhCCCCCccc
Q 039050 101 FQGENVDNIEE 111 (112)
Q Consensus 101 f~~~~vp~~~~ 111 (112)
.|+.+.|++.+
T Consensus 106 ~rr~~~~~~~r 116 (287)
T PF07760_consen 106 IRRRRLPEEER 116 (287)
T ss_pred HhcccCCcccc
Confidence 99999887643
No 31
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=35.11 E-value=37 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.631 Sum_probs=20.0
Q ss_pred ccchHHHHHhhhhccCccHHHHHHH
Q 039050 76 RLPFVECLMFGALISATDPITILYI 100 (112)
Q Consensus 76 ~l~l~~allfGAiiS~TDPVaVlaI 100 (112)
+.-....+++||+++|.||++-+-+
T Consensus 188 r~~~~~~~iiaa~itPpD~~sql~l 212 (215)
T PF00902_consen 188 RYAYFGIFIIAAFITPPDPISQLLL 212 (215)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHH
Confidence 3455688999999999999987644
No 32
>COG2855 Predicted membrane protein [Function unknown]
Probab=34.07 E-value=2.3e+02 Score=23.71 Aligned_cols=46 Identities=13% Similarity=-0.085 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhhhCC
Q 039050 60 TETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGEN 105 (112)
Q Consensus 60 v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~~~~ 105 (112)
++.+++.++..+.-++|+|+..+++.|+=-|-=-..|+.++---.+
T Consensus 102 ~l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 102 TLSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 5555556665555567999999999986555445555555443333
No 33
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=33.65 E-value=39 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=18.9
Q ss_pred cchHHHHHhhhhccCc-cHHHHHHH
Q 039050 77 LPFVECLMFGALISAT-DPITILYI 100 (112)
Q Consensus 77 l~l~~allfGAiiS~T-DPVaVlaI 100 (112)
.-....+++||+++|+ |+++-+.+
T Consensus 205 ~~~v~~~i~aAiiTP~pD~~sqi~l 229 (249)
T CHL00182 205 YVILVSTIVGAILTPSTDPLTQLLL 229 (249)
T ss_pred hHhHHHHHHHHHhCCCCcHHHHHHH
Confidence 3456789999999995 99987654
No 34
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=32.55 E-value=1.9e+02 Score=20.82 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=19.1
Q ss_pred ccCccHHHHHHHhhhCCCCCcc
Q 039050 89 ISATDPITILYIFQGENVDNIE 110 (112)
Q Consensus 89 iS~TDPVaVlaIf~~~~vp~~~ 110 (112)
...|||......++++|+|+++
T Consensus 111 ~~TT~~~~l~~~l~~l~~P~~~ 132 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVPPLL 132 (198)
T ss_pred HHcCCHHHHHHHHHHcCCCHHH
Confidence 4579999999999999999864
No 35
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=32.27 E-value=46 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=17.8
Q ss_pred hHHHHHhhhhccC-ccHHHHHHH
Q 039050 79 FVECLMFGALISA-TDPITILYI 100 (112)
Q Consensus 79 l~~allfGAiiS~-TDPVaVlaI 100 (112)
....+++||+++| +||++-+-+
T Consensus 195 ~v~~~i~aAiiTP~pD~~sq~~l 217 (237)
T TIGR01912 195 ILVVLVFGAVITPDPDVVSMILL 217 (237)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHH
Confidence 3567899999999 999986543
No 36
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=30.19 E-value=43 Score=27.68 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.5
Q ss_pred HHHHHhhhhccCccHHH
Q 039050 80 VECLMFGALISATDPIT 96 (112)
Q Consensus 80 ~~allfGAiiS~TDPVa 96 (112)
..+++|||..=+||||+
T Consensus 254 sGg~~~GAfFmaTDpvT 270 (327)
T TIGR01946 254 SGGTMLGAFFIATDPVT 270 (327)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 47899999999999997
No 37
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.18 E-value=1.2e+02 Score=25.85 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHH
Q 039050 17 SPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPIT 96 (112)
Q Consensus 17 ~~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVa 96 (112)
|++-..+.++....+..|--.+.|...-.+....+-.=..++ ...-....|....|..|+++...++||=.+|--..|-
T Consensus 53 d~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~-qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVv 131 (408)
T COG4651 53 DQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALA-QIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVV 131 (408)
T ss_pred chhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHH-HHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHH
Confidence 444455777888887777777777666554442222111111 1112234566677888999999999997777666666
Q ss_pred HHHHhhhCC
Q 039050 97 ILYIFQGEN 105 (112)
Q Consensus 97 VlaIf~~~~ 105 (112)
.+--++|-+
T Consensus 132 llraLqEr~ 140 (408)
T COG4651 132 LLRALEERQ 140 (408)
T ss_pred HHHHHHHhc
Confidence 555555443
No 38
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.85 E-value=1.7e+02 Score=18.87 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHH
Q 039050 21 EQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETN 63 (112)
Q Consensus 21 ~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS 63 (112)
|+.+....-......-.+.|..||..+..........+.+.++
T Consensus 6 Q~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~ 48 (76)
T PF06645_consen 6 QRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLT 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333444444555667888999888666555543314443
No 39
>PLN00151 potassium transporter; Provisional
Probab=26.57 E-value=1.9e+02 Score=27.30 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhhh
Q 039050 28 GILLQIMMLVLSFVLGHVLRR--LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQG 103 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~~~--~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~~ 103 (112)
++...+++.++....+|.-.. ...--+|+.+.+++|+..+.+.++..-+.++..+++|.......|-+=..|.+.+
T Consensus 473 ~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~K 550 (852)
T PLN00151 473 VINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLSS 550 (852)
T ss_pred HHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666655654333 2222345555578888888888776668888888888877777777666555543
No 40
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=23.60 E-value=5e+02 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHHHHhccchHHHHHhhhhccCccHHH
Q 039050 70 VMFVMYRLPFVECLMFGALISATDPIT 96 (112)
Q Consensus 70 ~~~~~~~l~l~~allfGAiiS~TDPVa 96 (112)
......++++.+++.+|..+++.-..+
T Consensus 311 ~~~~~~g~~~~~al~~g~~L~~~Gef~ 337 (601)
T PRK03659 311 LLARLYGLRSSERMQFAGVLSQGGEFA 337 (601)
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHH
Confidence 334456999999999998887766555
No 41
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=23.44 E-value=1.1e+02 Score=26.87 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHhhhhccCccHHHHHHHhhhCCCCCccc
Q 039050 81 ECLMFGALISATDPITILYIFQGENVDNIEE 111 (112)
Q Consensus 81 ~allfGAiiS~TDPVaVlaIf~~~~vp~~~~ 111 (112)
+..||+. +++.|...+.+.+++.|+|-+++
T Consensus 50 y~~Ly~~-L~~~da~~I~~~L~~~gI~y~~~ 79 (542)
T PRK06007 50 YRVLYSN-LSDQDAGQIVAALDQAGIPYKVA 79 (542)
T ss_pred eeehhcC-CCHHHHHHHHHHHHHCCCCEEEc
Confidence 3445555 89999999999999999997653
No 42
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=22.99 E-value=35 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 039050 28 GILLQIMMLVLSFVLGHVL 46 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~ 46 (112)
++|+.+++|+++|+.||.+
T Consensus 99 ~~ff~vLLPpiif~sgy~l 117 (575)
T KOG1965|consen 99 DLFFLVLLPPIIFNSGYSL 117 (575)
T ss_pred cHHHHHhhchhhhccccee
Confidence 5899999999999999753
No 43
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.48 E-value=5.4e+02 Score=22.71 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=20.4
Q ss_pred HHHHHHhccchHHHHHhhhhccCccHHH
Q 039050 69 GVMFVMYRLPFVECLMFGALISATDPIT 96 (112)
Q Consensus 69 ~~~~~~~~l~l~~allfGAiiS~TDPVa 96 (112)
.....+.|+++.+++.+|.++++--..+
T Consensus 313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 313 WLLARPLGVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHHHhCCCHhHHHHHHHHHhccccHH
Confidence 3444557999999999998888655443
No 44
>COG3671 Predicted membrane protein [Function unknown]
Probab=22.20 E-value=3.1e+02 Score=19.86 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=18.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhccc
Q 039050 49 LIVGALANISNTETNISYLGGVMFVMYRLP 78 (112)
Q Consensus 49 ~~i~~la~~g~v~iS~~~vg~~~~~~~~l~ 78 (112)
|...+...+| .+.+.+.+|+++++..|+-
T Consensus 71 w~~vl~~iIg-~Llt~lgiGv~i~~AlgvW 99 (125)
T COG3671 71 WLAVLWWIIG-LLLTFLGIGVVILVALGVW 99 (125)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4444556677 7777777787777765543
No 45
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=21.63 E-value=2.2e+02 Score=23.51 Aligned_cols=28 Identities=14% Similarity=-0.075 Sum_probs=16.9
Q ss_pred HHHHHHHhccchHHHHHhh----------hhccCccHH
Q 039050 68 GGVMFVMYRLPFVECLMFG----------ALISATDPI 95 (112)
Q Consensus 68 g~~~~~~~~l~l~~allfG----------AiiS~TDPV 95 (112)
+..++-+++.+-..+.+.| |.+.++||+
T Consensus 236 ~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~ 273 (312)
T PRK12460 236 NIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPS 273 (312)
T ss_pred HHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchh
Confidence 3333334577777777777 356666765
No 46
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=21.55 E-value=3.4e+02 Score=20.05 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchH--HHHHhhhhc
Q 039050 27 VGILLQIMMLVLSFVLGHVLRR------LIVGALANISNTETNISYLGGVMFVMYRLPFV--ECLMFGALI 89 (112)
Q Consensus 27 ~~lfl~i~Lp~l~f~~~~~~~~------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~--~allfGAii 89 (112)
-++.+.+|+-..-...|..+-+ +....++.+- +.+.........+++.++++. ....-|+.-
T Consensus 56 ~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i-~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T 125 (169)
T PF06826_consen 56 RQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII-TLVPLLIALVIGRYLFKLNPGIAAGILAGALT 125 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence 3566677777777777754333 4444445443 444444444444446677653 334444443
No 47
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=21.05 E-value=1.5e+02 Score=24.46 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCc---cHHHHHHHhhhCCCC
Q 039050 55 ANISNTETNISYLGGVMFVMYRLPFVECLMFGALISAT---DPITILYIFQGENVD 107 (112)
Q Consensus 55 a~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~T---DPVaVlaIf~~~~vp 107 (112)
...| -.+++...+..++|+..+++..+++-|-+|+-- .-+...||=|++|+.
T Consensus 214 Gl~G-Gilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvK 268 (303)
T COG4589 214 GLIG-GILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCGDLVMSAIKRDVGVK 268 (303)
T ss_pred HHhh-hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCC
Confidence 3456 677888889999999999999999988776532 123335666676664
No 48
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.91 E-value=44 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=14.7
Q ss_pred HhhhhccCccHHHHHHHh
Q 039050 84 MFGALISATDPITILYIF 101 (112)
Q Consensus 84 lfGAiiS~TDPVaVlaIf 101 (112)
-.|.|++++||||+=++.
T Consensus 185 ~~~~i~as~DpVAvD~v~ 202 (206)
T PF04015_consen 185 KLGVILASTDPVAVDAVA 202 (206)
T ss_pred cCCEEEEECCHHHHHHHH
Confidence 458999999999986654
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=20.56 E-value=6.8e+02 Score=23.12 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=20.4
Q ss_pred HHHHhccchHHHHHhhhhccCccHHH
Q 039050 71 MFVMYRLPFVECLMFGALISATDPIT 96 (112)
Q Consensus 71 ~~~~~~l~l~~allfGAiiS~TDPVa 96 (112)
...+.++|+.+++.+|.++++---+.
T Consensus 371 ~a~~~g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 371 IAFFYTMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred HHHHhCCCHHHHHHHHHHHhcccHHH
Confidence 33457999999999999998865444
No 50
>PLN00149 potassium transporter; Provisional
Probab=20.24 E-value=2.7e+02 Score=25.92 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhhh
Q 039050 28 GILLQIMMLVLSFVLGHVLRR--LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQG 103 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~~~--~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~~ 103 (112)
++...++.-++....+|.-.. ...--+|+.+.+++|+..+.+.+...-+.++..+++|...+...|-+=..|.+.+
T Consensus 400 ~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~K 477 (779)
T PLN00149 400 EINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIK 477 (779)
T ss_pred HHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555665555554332 2222335555578888888887766667888888888887777777666655543
No 51
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=20.19 E-value=4e+02 Score=21.70 Aligned_cols=17 Identities=53% Similarity=0.851 Sum_probs=15.3
Q ss_pred HHHHHhhhhccCccHHH
Q 039050 80 VECLMFGALISATDPIT 96 (112)
Q Consensus 80 ~~allfGAiiS~TDPVa 96 (112)
..+++|||..=.|||++
T Consensus 239 sGg~lf~AfFm~TDp~T 255 (313)
T PF03116_consen 239 SGGLLFGAFFMATDPVT 255 (313)
T ss_pred HHHHHHHHHHHccCCCC
Confidence 56899999999999987
Done!