Query 039050
Match_columns 112
No_of_seqs 124 out of 1128
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0e_A Sodium/hydrogen exchang 99.4 4.6E-14 1.6E-18 79.6 -0.3 32 78-109 2-33 (33)
2 1y4e_A Sodium/hydrogen exchang 93.0 0.0052 1.8E-07 32.7 -2.1 21 28-48 5-25 (27)
3 4b4a_A TATC, SEC-independent p 31.8 30 0.001 26.1 2.7 21 78-99 191-211 (249)
4 4av3_A K(+)-stimulated pyropho 19.4 1.7E+02 0.0057 25.8 5.4 26 66-91 72-97 (735)
5 3ne5_A Cation efflux system pr 13.6 5.1E+02 0.017 22.7 7.1 54 32-87 884-937 (1054)
6 3k3f_A UREA transporter; membr 12.9 5E+02 0.017 20.3 7.7 26 83-108 106-131 (340)
7 2b2h_A AMT-1, ammonium transpo 11.5 4.2E+02 0.014 21.3 5.5 20 29-48 14-34 (399)
8 3ksm_A ABC-type sugar transpor 9.2 1.5E+02 0.0051 20.3 1.8 26 86-111 189-216 (276)
9 2v50_A Multidrug resistance pr 9.1 9.4E+02 0.032 21.1 8.1 61 39-101 352-416 (1052)
10 3tij_A NUPC family protein; me 8.9 1.8E+02 0.006 23.9 2.4 18 73-90 314-331 (424)
No 1
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=99.36 E-value=4.6e-14 Score=79.57 Aligned_cols=32 Identities=31% Similarity=0.594 Sum_probs=29.5
Q ss_pred chHHHHHhhhhccCccHHHHHHHhhhCCCCCc
Q 039050 78 PFVECLMFGALISATDPITILYIFQGENVDNI 109 (112)
Q Consensus 78 ~l~~allfGAiiS~TDPVaVlaIf~~~~vp~~ 109 (112)
+|.+|++|||++||||||+|++|||++++|+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~~ 33 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKKX 33 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC-
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCCC
Confidence 57789999999999999999999999999973
No 2
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=92.98 E-value=0.0052 Score=32.73 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 039050 28 GILLQIMMLVLSFVLGHVLRR 48 (112)
Q Consensus 28 ~lfl~i~Lp~l~f~~~~~~~~ 48 (112)
++|++.+||+++|++||.+++
T Consensus 5 ~~FF~~LLPPII~~aGy~l~~ 25 (27)
T 1y4e_A 5 DVFFLFLLPPIILDAGYFLPL 25 (27)
T ss_dssp CSSHHHHSCCSSHHHHTTGGG
T ss_pred ceeeeeccCccEeeccccccC
Confidence 368899999999999999886
No 3
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=31.81 E-value=30 Score=26.10 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.4
Q ss_pred chHHHHHhhhhccCccHHHHHH
Q 039050 78 PFVECLMFGALISATDPITILY 99 (112)
Q Consensus 78 ~l~~allfGAiiS~TDPVaVla 99 (112)
-...++++||+++| ||++-+-
T Consensus 191 ~iv~~~v~aAiiTP-D~~sq~l 211 (249)
T 4b4a_A 191 FIVIAFVIGAIIAP-DVSTQVL 211 (249)
T ss_dssp HHHHHHHHHHHHCS-SHHHHHH
T ss_pred HHHHHHHHHHHHCC-cHHHHHH
Confidence 45678999999999 9998654
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.37 E-value=1.7e+02 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHHHHHhccchHHHHHhhhhccC
Q 039050 66 YLGGVMFVMYRLPFVECLMFGALISA 91 (112)
Q Consensus 66 ~vg~~~~~~~~l~l~~allfGAiiS~ 91 (112)
+++.++++..++.-..||++||+.|.
T Consensus 72 v~~~ll~~~~~~~~ai~Fl~Ga~~S~ 97 (735)
T 4av3_A 72 VIAILLMIFTTWQTGVAFLLGAVMSA 97 (735)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444455556556789999998874
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=13.56 E-value=5.1e+02 Score=22.71 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhh
Q 039050 32 QIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGA 87 (112)
Q Consensus 32 ~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGA 87 (112)
.+.+..+.+.....++.+...+...+. ++++.+. ++...++.|.++....++|.
T Consensus 884 ~~al~li~l~L~~~f~S~~~~l~il~~-ip~~~~g-~~~~l~l~g~~l~~~~~~g~ 937 (1054)
T 3ne5_A 884 PMTLMIIFVLLYLAFRRVGEALLIISS-VPFALVG-GIWLLWWMGFHLSVATGTGF 937 (1054)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHTT-SHHHHHH-HHHHHHHHTCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHH-HHHHHHHHCCCccHHHHHHH
Confidence 333333333444555543333333333 4443332 33344445655554444443
No 6
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=12.91 E-value=5e+02 Score=20.32 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=13.1
Q ss_pred HHhhhhccCccHHHHHHHhhhCCCCC
Q 039050 83 LMFGALISATDPITILYIFQGENVDN 108 (112)
Q Consensus 83 llfGAiiS~TDPVaVlaIf~~~~vp~ 108 (112)
.++|+++|.-=-.+...++++.++|.
T Consensus 106 ~i~~~~ls~~v~~~l~~~l~~~~lP~ 131 (340)
T 3k3f_A 106 VALNGAFTTIIMASLLNFLGKWGVPA 131 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 34555555322223345666666664
No 7
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=11.51 E-value=4.2e+02 Score=21.26 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=13.3
Q ss_pred HHHHHHHHHH-HHHHhhhhhh
Q 039050 29 ILLQIMMLVL-SFVLGHVLRR 48 (112)
Q Consensus 29 lfl~i~Lp~l-~f~~~~~~~~ 48 (112)
.+.+++-|.+ .|+.|...+|
T Consensus 14 ~LV~~M~~Gfa~~~~G~vR~K 34 (399)
T 2b2h_A 14 ALVMLMVPGVGFFYAGMVRRK 34 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHHHhcccccHh
Confidence 3445566766 5778887777
No 8
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=9.17 E-value=1.5e+02 Score=20.31 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=19.8
Q ss_pred hhhccCccHHH--HHHHhhhCCCCCccc
Q 039050 86 GALISATDPIT--ILYIFQGENVDNIEE 111 (112)
Q Consensus 86 GAiiS~TDPVa--VlaIf~~~~vp~~~~ 111 (112)
=|+++..|..+ ++..+++.|+|+++.
T Consensus 189 ~ai~~~~d~~a~g~~~al~~~g~p~di~ 216 (276)
T 3ksm_A 189 DGLFTPNESTTIGALVAIRQSGMSKQFG 216 (276)
T ss_dssp CEEECCSHHHHHHHHHHHHHTTCTTSSE
T ss_pred eEEEECCchhhhHHHHHHHHcCCCCCeE
Confidence 37889999876 566788889887653
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=9.05 E-value=9.4e+02 Score=21.07 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=26.0
Q ss_pred HHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhc----cCccHHHHHHHh
Q 039050 39 SFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALI----SATDPITILYIF 101 (112)
Q Consensus 39 ~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAii----S~TDPVaVlaIf 101 (112)
.+..-..++.+...++..+. +.++.+. ++...++.|.++...-++|-++ +--|.+-++.-+
T Consensus 352 ~lvl~~~~~s~~~~li~~~~-ip~s~~~-~~~~l~~~g~~ln~~s~~gl~~~iGi~vd~aI~~~~~~ 416 (1052)
T 2v50_A 352 FLVMYLFLQNFRATLIPTIA-VPVVLLG-TFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV 416 (1052)
T ss_dssp HHHHHHHHCCHHHHHHHHHH-HHHHHHH-HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH-HHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHhhccceEEEehHH
Confidence 33344455554433333334 4444333 3333444565554333444332 224555444443
No 10
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=8.88 E-value=1.8e+02 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=15.0
Q ss_pred HHhccchHHHHHhhhhcc
Q 039050 73 VMYRLPFVECLMFGALIS 90 (112)
Q Consensus 73 ~~~~l~l~~allfGAiiS 90 (112)
|+.|.||.+|+..|.++.
T Consensus 314 ~lmGVpw~d~~~vg~liG 331 (424)
T 3tij_A 314 FLIGVPWNEATVAGEFIG 331 (424)
T ss_dssp HHTTCCGGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 456999999999998873
Done!