Query 039050
Match_columns 112
No_of_seqs 124 out of 1128
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:25:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039050.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039050hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2abqa1 c.72.1.1 (A:1-306) Fru 17.8 91 0.0066 20.5 4.8 44 66-109 251-303 (306)
2 d1v54m_ f.23.7.1 (M:) Mitochon 16.3 79 0.0058 16.6 4.7 30 15-44 7-36 (43)
3 d2hkua2 a.121.1.1 (A:88-208) P 12.1 35 0.0025 21.8 1.0 16 92-109 102-117 (121)
4 d1ku9a_ a.4.5.36 (A:) DNA-bind 10.1 29 0.0021 21.1 0.1 34 75-108 22-55 (151)
5 d1hmja_ d.78.1.1 (A:) RNA poly 8.6 49 0.0036 18.7 0.7 9 89-97 28-36 (68)
6 d1eika_ d.78.1.1 (A:) RNA poly 8.1 59 0.0043 18.8 0.9 9 89-97 39-47 (77)
7 d2afba1 c.72.1.1 (A:-2-330) 2- 6.9 1.4E+02 0.01 19.6 2.7 23 68-90 288-310 (333)
8 d1dzfa2 d.78.1.1 (A:144-215) E 6.5 77 0.0056 18.0 0.9 9 89-97 35-43 (72)
9 d2f02a1 c.72.1.1 (A:1-313) Tag 6.1 2.3E+02 0.017 18.5 3.4 25 66-90 257-282 (313)
10 d1rkda_ c.72.1.1 (A:) Ribokina 6.0 1.7E+02 0.013 18.3 2.6 25 66-90 254-279 (306)
No 1
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}
Probab=17.81 E-value=91 Score=20.53 Aligned_cols=44 Identities=7% Similarity=-0.030 Sum_probs=28.2
Q ss_pred HHHHHHHH-HhccchHHHHHhhhhcc--------CccHHHHHHHhhhCCCCCc
Q 039050 66 YLGGVMFV-MYRLPFVECLMFGALIS--------ATDPITILYIFQGENVDNI 109 (112)
Q Consensus 66 ~vg~~~~~-~~~l~l~~allfGAiiS--------~TDPVaVlaIf~~~~vp~~ 109 (112)
+.|.++|. .-|.++.+|+-+|...+ ..++-.+-.+.++++..-+
T Consensus 251 F~ag~l~~l~~g~~~~~al~~a~a~aa~~~~~~G~~~~~~v~~~~~~~~~~~~ 303 (306)
T d2abqa1 251 VVAGFLAALQEGKSLEDAVPFAVAAGSATAFSDGFCTREEVERLQQQLQRTIK 303 (306)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhHhc
Confidence 34444444 45899999999996653 3455666666666665443
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.35 E-value=79 Score=16.62 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=18.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039050 15 RGSPAKEQQAAGVGILLQIMMLVLSFVLGH 44 (112)
Q Consensus 15 ~~~~~~~~~~~~~~lfl~i~Lp~l~f~~~~ 44 (112)
++..+..|++-....+|.-||.+-....+|
T Consensus 7 ~~~ls~~E~aigLt~~f~~~L~PaGwVLsh 36 (43)
T d1v54m_ 7 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYH 36 (43)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 345666677767777776666665555544
No 3
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=12.09 E-value=35 Score=21.84 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=10.7
Q ss_pred ccHHHHHHHhhhCCCCCc
Q 039050 92 TDPITILYIFQGENVDNI 109 (112)
Q Consensus 92 TDPVaVlaIf~~~~vp~~ 109 (112)
-|+|+| ||.++++|+.
T Consensus 102 e~avav--if~~lqip~~ 117 (121)
T d2hkua2 102 EEAVAV--IFANLQIPET 117 (121)
T ss_dssp HHHHHH--HHHHHCCCHH
T ss_pred HHHHHH--HHHcccCcHH
Confidence 355554 7888888863
No 4
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.13 E-value=29 Score=21.11 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred hccchHHHHHhhhhccCccHHHHHHHhhhCCCCC
Q 039050 75 YRLPFVECLMFGALISATDPITILYIFQGENVDN 108 (112)
Q Consensus 75 ~~l~l~~allfGAiiS~TDPVaVlaIf~~~~vp~ 108 (112)
.|++...+=+++.+...-+|+++--|-+.+++++
T Consensus 22 ~Gl~~~~~~i~~~L~~~~~plt~~ela~~l~vsk 55 (151)
T d1ku9a_ 22 HGLNKSVGAVYAILYLSDKPLTISDIMEELKISK 55 (151)
T ss_dssp TTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCH
T ss_pred cCCCHHHHHHHHHHHhCCCCcCHHHHHHHhCCCc
Confidence 4899999999999987778998889999888875
No 5
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.64 E-value=49 Score=18.68 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=7.4
Q ss_pred ccCccHHHH
Q 039050 89 ISATDPITI 97 (112)
Q Consensus 89 iS~TDPVaV 97 (112)
|..|||++.
T Consensus 28 I~~~DPva~ 36 (68)
T d1hmja_ 28 IYEDDPVIQ 36 (68)
T ss_pred ccccCHHHH
Confidence 578999985
No 6
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.11 E-value=59 Score=18.76 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=7.3
Q ss_pred ccCccHHHH
Q 039050 89 ISATDPITI 97 (112)
Q Consensus 89 iS~TDPVaV 97 (112)
|+.|||++.
T Consensus 39 I~~~DPva~ 47 (77)
T d1eika_ 39 IKTTDPVAK 47 (77)
T ss_dssp CBTTSHHHH
T ss_pred ecccCHhhh
Confidence 678999884
No 7
>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]}
Probab=6.95 E-value=1.4e+02 Score=19.61 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=16.5
Q ss_pred HHHHHHHhccchHHHHHhhhhcc
Q 039050 68 GGVMFVMYRLPFVECLMFGALIS 90 (112)
Q Consensus 68 g~~~~~~~~l~l~~allfGAiiS 90 (112)
|++..++-|.++.+|+-+|+..+
T Consensus 288 gf~~~l~~g~~~~~al~~a~aaa 310 (333)
T d2afba1 288 ALIYGSLMGFDSQKKAEFAAAAS 310 (333)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Confidence 33334556999999999997544
No 8
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.50 E-value=77 Score=17.95 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=7.1
Q ss_pred ccCccHHHH
Q 039050 89 ISATDPITI 97 (112)
Q Consensus 89 iS~TDPVaV 97 (112)
|..+||++-
T Consensus 35 I~~~DPva~ 43 (72)
T d1dzfa2 35 IQRADPVAL 43 (72)
T ss_dssp ECTTCHHHH
T ss_pred ecccCHhhh
Confidence 578999874
No 9
>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}
Probab=6.08 E-value=2.3e+02 Score=18.50 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.2
Q ss_pred HHHHHHHH-HhccchHHHHHhhhhcc
Q 039050 66 YLGGVMFV-MYRLPFVECLMFGALIS 90 (112)
Q Consensus 66 ~vg~~~~~-~~~l~l~~allfGAiiS 90 (112)
+.|.++|. .-|.++..|+-+|+..+
T Consensus 257 f~ag~i~~l~~g~~~~~al~~A~a~a 282 (313)
T d2f02a1 257 TIAGLAYGLAKDAPAAELLKWGMAAG 282 (313)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44555554 45899999999886553
No 10
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=1.7e+02 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.382 Sum_probs=17.1
Q ss_pred HHHHHHHH-HhccchHHHHHhhhhcc
Q 039050 66 YLGGVMFV-MYRLPFVECLMFGALIS 90 (112)
Q Consensus 66 ~vg~~~~~-~~~l~l~~allfGAiiS 90 (112)
++|+++|. .-+.++.+|+-+|+..+
T Consensus 254 f~Ag~l~~l~~g~~~~~a~~~a~~~a 279 (306)
T d1rkda_ 254 FNGALITALLEEKPLPEAIRFAHAAA 279 (306)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34444444 45899999999997643
Done!