RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039050
(112 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 35.1 bits (81), Expect = 0.003
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 79 FVECLMFGALISATDPITILYIFQGENVD 107
++ L+FG+LISA DP+ +L +F+ +V+
Sbjct: 131 LLDNLLFGSLISAVDPVAVLAVFEEYHVN 159
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 34.2 bits (79), Expect = 0.008
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 68 GGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVD 107
+++ +P + GA++S TDP+ + IF+ V
Sbjct: 107 LLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVP 146
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 27.9 bits (63), Expect = 0.98
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 77 LPFVECLMFGALISATDPITILYIFQGEN 105
+P +E L+FGA +SAT P+ +L I +
Sbjct: 104 IPLLEALLFGAALSATSPVVVLAILKERG 132
>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR
protein. Members of this protein family are
uncharacterized tetratricopeptide repeat (TPR) proteins
invariably found in heme biosynthesis gene clusters.
The absence of any invariant residues other than Ala
argues against this protein serving as an enzyme per
se. The gene symbol hemY assigned in E. coli is
unfortunate in that an unrelated protein,
protoporphyrinogen oxidase (HemG in E. coli) is
designated HemY in Bacillus subtilis [Unknown function,
General].
Length = 367
Score = 28.0 bits (63), Expect = 1.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 33 IMMLVLSFVLGHVLRRLIVGAL 54
+++LVL FV+ ++L RLI
Sbjct: 26 VLLLVLLFVVLYILLRLIRRVF 47
>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain. This domain is found in a
number proteins including Rhophilin and BRO1. It is
known to have a role in endosomal targeting. ESCRT-III
subunit Snf7 binds to a conserved hydrophobic patch in
the BRO1 domain that is required for protein complex
formation and for the protein-sorting function of BRO1.
Length = 381
Score = 27.3 bits (61), Expect = 1.8
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 46 LRRLIVGALANISNTETNISYLGGVMFVMYRLPF 79
LR+ + S E + Y G + + R P
Sbjct: 43 LRQAARTPSRDESGLELLLKYYGQLEALELRFPP 76
>gnl|CDD|116035 pfam07413, Herpes_UL37_2, Betaherpesvirus immediate-early
glycoprotein UL37. This family consists of several
Betaherpesvirus immediate-early glycoprotein UL37
sequences. The human cytomegalovirus (HCMV) UL37
immediate-early regulatory protein is a type I integral
membrane N-glycoprotein which traffics through the ER
and the Golgi network.
Length = 273
Score = 25.9 bits (57), Expect = 4.9
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 15 RGSPAKEQQAAGVGILL----QIMMLVLSFVLGHVLRRLIV 51
+ AA +G+ M+L L L RR I+
Sbjct: 230 DYRAGGDWLAAMLGMFFVAGGSFMLLSLFCCLSIKRRRDIL 270
>gnl|CDD|235844 PRK06638, PRK06638, NADH:ubiquinone oxidoreductase subunit J;
Provisional.
Length = 198
Score = 25.2 bits (56), Expect = 7.6
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 25 AGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPF 79
G+ ILL +++L++ + I+ E N +G ++F Y LPF
Sbjct: 97 IGLVILLGLLLLLI----VGAIIAASGVNAQGIAAGEGNTKAIGILLFTDYLLPF 147
>gnl|CDD|237380 PRK13417, PRK13417, F0F1 ATP synthase subunit A; Provisional.
Length = 352
Score = 25.6 bits (56), Expect = 7.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 26 GVGILLQIMMLVLSFVLGHVLRR--LIVGALANISNTETNISYLGGVMF 72
GV +LL +M L F++ + + L V LAN++ I L G +F
Sbjct: 256 GVPLLLYPIMWPLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIF 304
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Thermotoga marina NorM. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 432
Score = 25.2 bits (56), Expect = 8.3
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 25 AGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLM 84
A VG+ Q++ L+L + L G +A +S G + R + L+
Sbjct: 37 AAVGLATQVLWLLLVLNMA-----LGTGTVALVSQ------SYGAGDYERARRALGQSLL 85
Query: 85 FGALISATDPITILYIF 101
L+S P+ +L +
Sbjct: 86 LALLLSL--PLALLGLL 100
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 25.1 bits (55), Expect = 8.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 6 LQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSF 40
+Q+ ++ SP + Q GI++ M+L +SF
Sbjct: 189 IQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSF 223
>gnl|CDD|185013 PRK15053, dpiB, sensor histidine kinase DpiB; Provisional.
Length = 545
Score = 25.2 bits (55), Expect = 9.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 25 AGVGILLQIMMLVLSFVLGHVLRRLIVG 52
AGV ++L ++++LS+ +RR ++G
Sbjct: 184 AGVFVVLLGILMLLSWFFAAHIRRQMMG 211
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 25.3 bits (55), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 71 MFVMYRLP---FVECLMFGALISATDPI 95
+FV +P F L+ GA I+ATDP+
Sbjct: 119 LFVWILVPGLNFPASLLMGACITATDPV 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.391
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,798,088
Number of extensions: 514192
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 77
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)