RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 039050
         (112 letters)



>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein,
           NHE1; NMR {Homo sapiens}
          Length = 33

 Score = 33.9 bits (77), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 81  ECLMFGALISATDPITILYIFQGENVD 107
           + L+FG++ISA DP+ +L +F+  +  
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFEEIHKK 31


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.036
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 25/112 (22%)

Query: 19  AKEQQAAGVGILLQIMMLVL-----SFVLG---HVLRRLIVGALANISNTETNI------ 64
           +   + + VG   Q++ L L      ++ G   H L       L   ++T          
Sbjct: 69  SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL----AAKLLQENDTTLVKTKELIK 124

Query: 65  SYLGGVMFVMYRLPFVECLMFGALI-SATDPITILY-IF--QGENVDNIEEL 112
           +Y+   +    + PF +     AL  +  +    L  IF  QG   D  EEL
Sbjct: 125 NYITARIMA--KRPFDKKS-NSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173



 Score = 28.9 bits (64), Expect = 0.33
 Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 5/23 (21%)

Query: 2   TEEALQISLANDPR-----GSPA 19
             + ++ISL N  +     G P 
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQ 384



 Score = 26.6 bits (58), Expect = 2.4
 Identities = 15/121 (12%), Positives = 29/121 (23%), Gaps = 43/121 (35%)

Query: 16   GSPAKEQQAAGVGILL---------------QIMMLVLSFVLGHVLRRLIVGALANISNT 60
            GS     Q  G+G+ L                       F +  ++           +N 
Sbjct: 1625 GS-----QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI----------NNP 1669

Query: 61   ETNISYLGGV---------MFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEE 111
                 + GG            +++       L    +    +  +  Y F+ E       
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK----GL 1725

Query: 112  L 112
            L
Sbjct: 1726 L 1726


>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
           alternative splicing, endocytosis, lipid-binding, golgi
           apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
           {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
          Length = 621

 Score = 28.0 bits (62), Expect = 0.63
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 8   ISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALA-NISNTETNISY 66
           ++ A +P  S   +   A   +L + + L++       L       L   + + ETN+ Y
Sbjct: 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRY 347

Query: 67  LG 68
           L 
Sbjct: 348 LA 349


>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump,
           membrane protein, Na ubiquinone, cytoplasmic membrane;
           HET: LFA CA7; 3.00A {Escherichia coli}
          Length = 184

 Score = 24.5 bits (54), Expect = 9.5
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 24  AAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPF 79
             G  IL  IM++V+ + +  V           I  T  +   +G  +F  Y L  
Sbjct: 93  WIGPAILSAIMLVVIVYAILGV-------NDQGIDGTPISAKAVGITLFGPYVLAV 141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.141    0.391 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,656,447
Number of extensions: 88000
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.3 bits)