RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039050
         (112 letters)



>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
           catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 453

 Score = 23.8 bits (51), Expect = 7.6
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 56  NISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGEN 105
           +++  E+ I  LGG +   Y L      +  A         ++  F+  +
Sbjct: 81  DVNLFESTIRILGG-LLSAYHLSGDSLFLRKAEDFGN---RLMPAFRTPS 126


>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
           recognition particle receptor FtsY {Thermotoga maritima
           [TaxId: 2336]}
          Length = 213

 Score = 23.5 bits (50), Expect = 8.2
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 80  VECLMFGALISATD--PITILYIFQGENVDNIEEL 112
                 G  ++      I I +I  GE  +++   
Sbjct: 167 DGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPF 201


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.391 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,639
Number of extensions: 14297
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.3 bits)