BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039052
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 40 KVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKND--SVLEVDKWGYYHCNSSN 97
KVGD GW + Y++WA+ N+FHVGDSL F Y N +VL+VD+ + CNSS+
Sbjct: 6 KVGDSTGWTTLVPYD---YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSS 62
Query: 98 ATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEV 137
++ +G L RPG FYF+ G P HC+ GQ++ ++V
Sbjct: 63 PAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 41 VGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDS--VLEVD-KWGYYHCNSSN 97
VGD GW P N YSQWA F VGDSL F + ++ V E++ K + CN N
Sbjct: 8 VGDNTGWSVPSSPN--FYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 98 ATVAFNNGKSVF-KLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139
+ V +LD G YF+ HC NGQ+L + V+
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 108
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 36 VKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHC 93
++D+ VG W+ P ++ Y WAT F VGD L F++ V V K + +C
Sbjct: 1 MEDYDVGGDMEWKRP--SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNC 58
Query: 94 NSSNATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138
N L+ GP Y+I DHC+ GQ+L + V+
Sbjct: 59 KKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 39 FKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKND--SVLEVDKWGYYHCNSS 96
+ VG GW T W RF GD L F Y +V+ V++ G+ CN+
Sbjct: 3 YVVGGSGGW-------TFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55
Query: 97 NATVAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138
+ +G+ KL + G YFI P HC++G ++ V +
Sbjct: 56 AGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 67 FHVGDSLSFEY--KNDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTP 124
F GD L F+Y +V+ V+ GY C++ +++G+ KL R G YFI P
Sbjct: 19 FRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYFICSFP 77
Query: 125 DHCKNGQRLLVEV 137
HC G ++ +
Sbjct: 78 GHCGGGMKIAINA 90
>pdb|1O7V|A Chain A, High Resolution Structure Of Siglec-7
pdb|2HRL|A Chain A, Siglec-7 In Complex With Gt1b
pdb|2DF3|A Chain A, The Structure Of Siglec-7 In Complex With
Alpha(2,3)ALPHA(2,6) Disialyl Lactotetraosyl
2-(Trimethylsilyl)ethyl
pdb|1O7S|A Chain A, High Resolution Structure Of Siglec-7
pdb|2G5R|A Chain A, Crystal Structure Of Siglec-7 In Complex With
Methyl-9-(Aminooxalyl- Amino)-9-Deoxyneu5ac
(Oxamido-Neu5ac)
Length = 127
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 6 MWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKD--------FKVGDGFGWQEP-GHNNTA 56
M SS+ G CV + + + V++ D F+ G+ W+ P NN A
Sbjct: 13 MQSSVTVQEGMCVHVRCSF-----SYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPA 67
Query: 57 MYSQWATRNRFHV 69
Q TR+RFH+
Sbjct: 68 WAVQEETRDRFHL 80
>pdb|1NKO|A Chain A, Energetic And Structural Basis Of Sialylated
Oligosaccharide Recognition By The Natural Killer Cell
Inhibitory Receptor P75AIRM1 OR SIGLEC-7
Length = 132
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 6 MWSSLLSFHGTCVLLLLTLVSMNDGFGVEAVKD--------FKVGDGFGWQEP-GHNNTA 56
M SS+ G CV + + + V++ D F+ G+ W+ P NN A
Sbjct: 12 MQSSVTVQEGMCVHVRCSF-----SYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPA 66
Query: 57 MYSQWATRNRFHV 69
Q TR+RFH+
Sbjct: 67 WAVQEETRDRFHL 79
>pdb|1AD9|H Chain H, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
pdb|1AD9|B Chain B, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
Length = 219
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 45 FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAF 102
GW +PG NT ++ R V S + Y S L + +Y C T +
Sbjct: 48 IGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFYFCAREKTTYYY 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,797,559
Number of Sequences: 62578
Number of extensions: 241536
Number of successful extensions: 432
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 10
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)