Query 039052
Match_columns 188
No_of_seqs 132 out of 805
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 8.4E-42 1.8E-46 278.0 14.3 101 34-140 18-120 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 4.2E-32 9.1E-37 198.9 4.5 83 47-131 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.6 9E-07 1.9E-11 68.1 11.7 69 63-138 47-119 (119)
4 PF00127 Copper-bind: Copper b 98.2 7.1E-06 1.5E-10 60.8 7.8 73 64-138 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.2 9.3E-06 2E-10 60.3 8.5 87 39-138 3-99 (99)
6 TIGR03102 halo_cynanin halocya 97.9 0.00011 2.4E-09 56.8 8.6 86 35-138 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 97.6 0.00039 8.5E-09 54.9 8.8 80 40-138 42-127 (128)
8 TIGR02375 pseudoazurin pseudoa 97.6 0.00049 1.1E-08 53.2 8.4 74 63-142 15-91 (116)
9 TIGR02657 amicyanin amicyanin. 96.8 0.0076 1.6E-07 43.2 7.6 68 64-138 12-83 (83)
10 KOG3858 Ephrin, ligand for Eph 96.6 0.0085 1.8E-07 51.7 7.5 78 66-143 46-165 (233)
11 PF06525 SoxE: Sulfocyanin (So 96.5 0.017 3.8E-07 48.6 8.7 77 67-143 90-191 (196)
12 TIGR03095 rusti_cyanin rusticy 96.5 0.012 2.7E-07 47.1 7.3 31 108-138 118-148 (148)
13 PF13473 Cupredoxin_1: Cupredo 94.6 0.047 1E-06 40.3 3.9 64 64-137 36-104 (104)
14 TIGR03094 sulfo_cyanin sulfocy 93.7 0.077 1.7E-06 44.5 3.7 32 112-143 159-190 (195)
15 PF00812 Ephrin: Ephrin; Inte 93.0 0.021 4.7E-07 45.9 -0.6 73 66-138 25-144 (145)
16 COG4454 Uncharacterized copper 91.3 0.35 7.7E-06 39.5 4.5 75 63-138 63-157 (158)
17 TIGR03096 nitroso_cyanin nitro 89.4 0.69 1.5E-05 36.9 4.6 58 63-128 61-123 (135)
18 TIGR02866 CoxB cytochrome c ox 87.8 2 4.3E-05 35.7 6.5 90 37-140 92-193 (201)
19 PRK02888 nitrous-oxide reducta 87.7 1.9 4.1E-05 42.3 7.2 72 64-139 556-634 (635)
20 PF00116 COX2: Cytochrome C ox 85.0 1.8 4E-05 33.3 4.6 64 64-138 47-120 (120)
21 PLN02604 oxidoreductase 81.2 14 0.00031 35.5 10.0 77 64-141 56-146 (566)
22 TIGR02376 Cu_nitrite_red nitri 81.0 7.6 0.00017 34.5 7.5 75 65-142 61-149 (311)
23 COG1622 CyoA Heme/copper-type 80.2 5.4 0.00012 34.7 6.2 33 108-142 180-215 (247)
24 MTH00047 COX2 cytochrome c oxi 79.6 8.9 0.00019 32.1 7.1 32 108-141 159-193 (194)
25 PF07732 Cu-oxidase_3: Multico 71.5 4.2 9.1E-05 31.0 2.8 76 64-140 27-116 (117)
26 PRK10378 inactive ferrous ion 70.0 31 0.00067 31.9 8.6 28 108-140 91-118 (375)
27 PF02839 CBM_5_12: Carbohydrat 69.0 3 6.5E-05 25.7 1.3 25 58-85 1-25 (41)
28 PLN02354 copper ion binding / 65.6 66 0.0014 31.0 10.2 70 65-141 60-148 (552)
29 TIGR02695 azurin azurin. Azuri 59.8 17 0.00038 28.7 4.3 33 103-136 86-124 (125)
30 TIGR03388 ascorbase L-ascorbat 57.2 36 0.00077 32.5 6.8 77 64-141 33-123 (541)
31 MTH00140 COX2 cytochrome c oxi 56.4 16 0.00036 31.0 4.0 31 108-140 183-216 (228)
32 TIGR01480 copper_res_A copper- 54.7 39 0.00085 32.9 6.7 83 47-137 488-586 (587)
33 TIGR02228 sigpep_I_arch signal 53.6 67 0.0015 25.9 6.9 24 63-86 57-86 (158)
34 MTH00154 COX2 cytochrome c oxi 51.6 22 0.00048 30.3 4.0 30 108-139 183-215 (227)
35 PF12961 DUF3850: Domain of Un 51.1 8.6 0.00019 27.6 1.2 14 63-76 25-38 (72)
36 PTZ00047 cytochrome c oxidase 50.9 23 0.0005 29.1 3.8 30 108-139 116-148 (162)
37 MTH00168 COX2 cytochrome c oxi 49.4 24 0.00052 30.0 3.9 31 108-140 183-216 (225)
38 MTH00139 COX2 cytochrome c oxi 47.7 25 0.00054 29.8 3.7 31 108-140 183-216 (226)
39 MTH00129 COX2 cytochrome c oxi 46.7 26 0.00055 30.0 3.6 31 108-140 183-216 (230)
40 cd06555 ASCH_PF0470_like ASC-1 46.4 10 0.00022 29.1 1.1 13 65-77 30-42 (109)
41 MTH00117 COX2 cytochrome c oxi 46.2 29 0.00063 29.6 3.9 30 108-139 183-215 (227)
42 MTH00098 COX2 cytochrome c oxi 46.1 28 0.00061 29.7 3.8 31 108-140 183-216 (227)
43 MTH00038 COX2 cytochrome c oxi 45.0 32 0.00069 29.4 4.0 31 108-140 183-216 (229)
44 PF11132 SplA: Transcriptional 44.5 16 0.00034 26.4 1.7 26 65-90 4-32 (75)
45 TIGR01433 CyoA cytochrome o ub 43.7 34 0.00073 29.2 3.9 31 108-140 182-215 (226)
46 PF10377 ATG11: Autophagy-rela 41.9 38 0.00083 26.5 3.7 17 65-81 41-58 (129)
47 MTH00023 COX2 cytochrome c oxi 41.0 38 0.00082 29.2 3.8 31 108-140 194-227 (240)
48 TIGR01432 QOXA cytochrome aa3 39.5 43 0.00093 28.1 3.9 31 108-140 173-206 (217)
49 MTH00008 COX2 cytochrome c oxi 39.4 41 0.00089 28.7 3.8 31 108-140 183-216 (228)
50 KOG3342 Signal peptidase I [In 39.3 12 0.00026 30.9 0.5 20 66-85 77-102 (180)
51 PLN00044 multi-copper oxidase- 38.8 86 0.0019 30.7 6.3 70 65-141 62-150 (596)
52 PF07731 Cu-oxidase_2: Multico 38.6 50 0.0011 24.7 3.8 32 108-139 105-136 (138)
53 MTH00051 COX2 cytochrome c oxi 37.3 42 0.00091 28.8 3.5 31 108-140 187-220 (234)
54 MTH00076 COX2 cytochrome c oxi 37.1 44 0.00096 28.5 3.7 31 108-140 183-216 (228)
55 cd05820 CBM20_novamyl Novamyl 36.1 28 0.00061 25.7 2.0 43 36-78 19-69 (103)
56 PLN02835 oxidoreductase 35.6 4.1E+02 0.0089 25.6 11.3 74 65-140 62-149 (539)
57 MTH00027 COX2 cytochrome c oxi 34.1 57 0.0012 28.6 3.9 31 108-140 217-250 (262)
58 PLN02191 L-ascorbate oxidase 32.3 1.4E+02 0.0031 28.8 6.7 75 65-140 56-144 (574)
59 PF10643 Cytochrome-c551: Phot 31.4 16 0.00034 31.5 0.0 25 1-25 65-94 (233)
60 MTH00185 COX2 cytochrome c oxi 30.6 70 0.0015 27.3 3.8 30 108-139 183-215 (230)
61 PF10670 DUF4198: Domain of un 30.3 2.8E+02 0.0061 22.0 7.8 57 65-121 145-209 (215)
62 MTH00080 COX2 cytochrome c oxi 28.8 84 0.0018 27.0 4.0 31 108-140 186-219 (231)
63 PF04014 Antitoxin-MazE: Antid 28.1 33 0.00072 21.7 1.1 33 40-80 2-34 (47)
64 KOG2675 Adenylate cyclase-asso 27.5 74 0.0016 30.3 3.6 29 45-73 147-175 (480)
65 PLN02792 oxidoreductase 27.4 2.1E+02 0.0046 27.5 6.8 74 66-141 50-137 (536)
66 smart00495 ChtBD3 Chitin-bindi 26.9 36 0.00078 20.8 1.1 19 58-76 1-19 (41)
67 KOG2315 Predicted translation 26.1 1.4E+02 0.0029 29.3 5.2 62 61-122 209-278 (566)
68 KOG1263 Multicopper oxidases [ 25.4 1.6E+02 0.0035 28.7 5.7 42 102-143 498-541 (563)
69 PF15436 PGBA_N: Plasminogen-b 24.7 36 0.00078 29.3 1.0 75 65-139 78-176 (218)
70 PF14326 DUF4384: Domain of un 24.4 2.5E+02 0.0055 19.6 6.6 13 66-78 2-14 (83)
71 PF01345 DUF11: Domain of unkn 24.3 61 0.0013 22.1 2.0 23 56-78 26-48 (76)
72 PRK10525 cytochrome o ubiquino 23.9 98 0.0021 27.9 3.7 30 108-139 194-226 (315)
73 PF02362 B3: B3 DNA binding do 23.6 33 0.00072 24.2 0.5 18 62-79 69-86 (100)
74 PF05753 TRAP_beta: Translocon 22.8 2E+02 0.0043 23.7 5.0 15 64-78 31-45 (181)
75 PF12273 RCR: Chitin synthesis 22.8 76 0.0017 24.3 2.4 10 6-15 1-10 (130)
76 PF10731 Anophelin: Thrombin i 22.7 41 0.00088 23.5 0.8 15 34-48 20-34 (65)
77 PLN02168 copper ion binding / 22.5 3E+02 0.0065 26.6 6.9 74 65-141 59-147 (545)
78 PF00686 CBM_20: Starch bindin 22.4 83 0.0018 22.5 2.4 43 36-78 16-67 (96)
79 KOG1546 Metacaspase involved i 22.1 51 0.0011 30.3 1.5 16 66-81 134-149 (362)
80 COG3627 PhnJ Uncharacterized e 21.9 57 0.0012 28.4 1.7 24 107-130 257-280 (291)
81 cd05809 CBM20_beta_amylase Bet 21.8 88 0.0019 22.7 2.5 43 36-78 18-67 (99)
82 cd05813 CBM20_genethonin_1 Gen 21.7 1E+02 0.0022 22.0 2.8 41 38-78 18-61 (95)
83 PLN00044 multi-copper oxidase- 20.5 2.2E+02 0.0048 27.9 5.6 40 102-141 496-537 (596)
84 cd00143 PP2Cc Serine/threonine 20.2 3.8E+02 0.0081 21.4 6.2 25 65-89 114-138 (254)
85 PF09451 ATG27: Autophagy-rela 20.1 1.2E+02 0.0026 26.2 3.4 17 35-51 222-238 (268)
86 KOG3416 Predicted nucleic acid 20.0 1E+02 0.0022 24.6 2.6 31 38-76 40-71 (134)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=8.4e-42 Score=277.96 Aligned_cols=101 Identities=34% Similarity=0.688 Sum_probs=95.0
Q ss_pred eeeeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEe
Q 039052 34 EAVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKL 111 (188)
Q Consensus 34 ~~a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L 111 (188)
+.+++|+|||+.||+.+ .+|++||++|+|+|||+|+|+|++ |||+||++++|++|+.++++..|++|++.|+|
T Consensus 18 ~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 18 TTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred ccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 67999999999999943 689999999999999999999984 99999999999999999999999999999999
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 039052 112 DRPGPFYFISGTPDHCKNGQRLLVEVMGL 140 (188)
Q Consensus 112 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~ 140 (188)
+++|+|||||+ .+||++||||.|+|.+.
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~~~ 120 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVHPL 120 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEcCC
Confidence 99999999999 59999999999999653
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=4.2e-32 Score=198.87 Aligned_cols=83 Identities=45% Similarity=0.957 Sum_probs=67.8
Q ss_pred CCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEecCcccEEEEeCCC
Q 039052 47 WQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTP 124 (188)
Q Consensus 47 W~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~~G~~YFic~~~ 124 (188)
|+++++ ..+|++||++++|+|||+|+|+|+. |+|+||++++|++|+.++++..+++|++.|+|+++|++||||+++
T Consensus 1 W~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~ 78 (85)
T PF02298_consen 1 WTIPTN--ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVP 78 (85)
T ss_dssp SSSSSS--TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--ST
T ss_pred CccCCC--ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCC
Confidence 887743 3699999999999999999999994 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 039052 125 DHCKNGQ 131 (188)
Q Consensus 125 ~HC~~Gm 131 (188)
+||++||
T Consensus 79 ~HC~~Gq 85 (85)
T PF02298_consen 79 GHCQKGQ 85 (85)
T ss_dssp TTTTTT-
T ss_pred CcccccC
Confidence 9999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.61 E-value=9e-07 Score=68.10 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=48.4
Q ss_pred cCCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCCc-eEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 63 TRNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNGK-SVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+..++++||++.|...+ |++.-- +.+....++ .....|. ..++++++|.|.|+|. .|=+.|||-.|.|.
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~---~~~~~~~~~--~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFD---GAKELSHKD--LAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEec---CCccccccc--cccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 45689999999998652 988632 111111111 1234554 3788999999999999 79889999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.22 E-value=7.1e-06 Score=60.81 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCeEecCceeEEEEe---CCeEEEEecc--CCCCCCCCCC---cccccCCce-EEEecCcccEEEEeCCCCCCCCCCeEE
Q 039052 64 RNRFHVGDSLSFEYK---NDSVLEVDKW--GYYHCNSSNA---TVAFNNGKS-VFKLDRPGPFYFISGTPDHCKNGQRLL 134 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~---~hsV~~V~~~--~Y~~C~~s~p---~~~~~~G~~-~v~L~~~G~~YFic~~~~HC~~GmKl~ 134 (188)
..++++||++.|... .|++...... .-...+.... ......|.+ .++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 568999999999996 2999998521 0011111111 122445554 788889999999999 8 999999999
Q ss_pred EEEe
Q 039052 135 VEVM 138 (188)
Q Consensus 135 I~V~ 138 (188)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.22 E-value=9.3e-06 Score=60.31 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=56.7
Q ss_pred EEecCCC-CCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccC-----CCCCCCCCCcccccCCce-E
Q 039052 39 FKVGDGF-GWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWG-----YYHCNSSNATVAFNNGKS-V 108 (188)
Q Consensus 39 ~~VGg~~-GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~-----Y~~C~~s~p~~~~~~G~~-~ 108 (188)
..+|.++ +-.+.| +..++++||++.|.... |+++..+... ...............|.+ .
T Consensus 3 v~~g~~~g~~~F~P-----------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~ 71 (99)
T TIGR02656 3 VKMGADKGALVFEP-----------AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYE 71 (99)
T ss_pred EEEecCCCceeEeC-----------CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEE
Confidence 4556533 356654 35689999999999652 8888642210 000111001112345554 6
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 109 FKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 109 v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++++.+|.|-|.|. +|+..||+-.|.|.
T Consensus 72 ~tF~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 72 VTFSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEeCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 88999999999999 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.86 E-value=0.00011 Score=56.81 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=59.7
Q ss_pred eeeEEEec--CC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCc-
Q 039052 35 AVKDFKVG--DG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGK- 106 (188)
Q Consensus 35 ~a~~~~VG--g~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~- 106 (188)
...+..|| ++ .+..|.| +..++++||++.|+++. |+|.-.....|+. .. .....|.
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P-----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t 85 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP-----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTT 85 (115)
T ss_pred ceEEEEecccCCCCceeEeC-----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCE
Confidence 45667888 32 2466665 34699999999999852 9997532233431 11 1233454
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 107 SVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 107 ~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
-.++|+++|.|-|+|.. |=..|||-.|.|.
T Consensus 86 ~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 86 YEHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 37899999999999995 8778999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.65 E-value=0.00039 Score=54.88 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=57.2
Q ss_pred EecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCC--c-eEEEecC
Q 039052 40 KVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNG--K-SVFKLDR 113 (188)
Q Consensus 40 ~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G--~-~~v~L~~ 113 (188)
++++...-.|.| +..+..+||++.|.+.. |||.-....+. .....+..+ . ...++++
T Consensus 42 ~~~~~~~~vF~P-----------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~------~g~~~~~~~~~~s~~~Tfe~ 104 (128)
T COG3794 42 KGVDIGAMVFEP-----------AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDP------EGSGTLKAGINESFTHTFET 104 (128)
T ss_pred eeccCcceeEcC-----------cEEEECCCCEEEEEECCCCCceEEEeCCCCc------ccccccccCCCcceEEEecc
Confidence 344444566665 35799999999999973 99998743311 111222222 3 3788999
Q ss_pred cccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 114 PGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 114 ~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+|.|.|+|.- |=..|||-.|.|.
T Consensus 105 ~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEecc--CCCCCcEEEEEeC
Confidence 9999999996 8889999999985
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.58 E-value=0.00049 Score=53.24 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred cCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCc-eEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 039052 63 TRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGK-SVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
+..++++||+|.|.+.+ |+|........+. .+... ...|. -.++++++|.|-|.|. .|=..||+-.|.|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~-s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFK-SKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---ccccc-CCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 35689999999999974 9988642211110 11111 11233 3788999999999999 699999999999987
Q ss_pred CCC
Q 039052 140 LHP 142 (188)
Q Consensus 140 ~~~ 142 (188)
...
T Consensus 89 ~~~ 91 (116)
T TIGR02375 89 PPA 91 (116)
T ss_pred CCc
Confidence 533
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.84 E-value=0.0076 Score=43.22 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=45.9
Q ss_pred CCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCCce-EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 64 RNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNGKS-VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G~~-~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..+.++||+|.|+... |+|.-.+..+ ..=+...+ ....|.+ .++++++|+|-|.|.... +||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4688999999998872 9998653221 11001111 2344544 789999999999999843 599988874
No 10
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.62 E-value=0.0085 Score=51.72 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=49.9
Q ss_pred eEecCceeEEE---EeC--------CeEEEEeccCCCCCCC-CCCc------------------ccccCCceEEEecCcc
Q 039052 66 RFHVGDSLSFE---YKN--------DSVLEVDKWGYYHCNS-SNAT------------------VAFNNGKSVFKLDRPG 115 (188)
Q Consensus 66 ~F~VGDtLvF~---y~~--------hsV~~V~~~~Y~~C~~-s~p~------------------~~~~~G~~~v~L~~~G 115 (188)
-.++||.|.+- |+. .-+++|++++|+.|+. +.+. +.|+.-...+++..--
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~ 125 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGH 125 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCC
Confidence 45678888775 331 2378899999999996 3332 2233333345555434
Q ss_pred cEEEEeCC-----------CCCCCC-CCeEEEEEecCCCC
Q 039052 116 PFYFISGT-----------PDHCKN-GQRLLVEVMGLHPI 143 (188)
Q Consensus 116 ~~YFic~~-----------~~HC~~-GmKl~I~V~~~~~~ 143 (188)
+||||++- ++-|.. .||+.+.|...+..
T Consensus 126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~~ 165 (233)
T KOG3858|consen 126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPRS 165 (233)
T ss_pred eEEEEeCCCccccccchhhCCEeccCCceEEEEecccCCC
Confidence 88999862 355553 59999999865543
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.54 E-value=0.017 Score=48.62 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=50.3
Q ss_pred EecCceeEEEEeC-----CeEEEE-eccCCCCCCC---CCCccc-------------ccCCceE--EEec-CcccEEEEe
Q 039052 67 FHVGDSLSFEYKN-----DSVLEV-DKWGYYHCNS---SNATVA-------------FNNGKSV--FKLD-RPGPFYFIS 121 (188)
Q Consensus 67 F~VGDtLvF~y~~-----hsV~~V-~~~~Y~~C~~---s~p~~~-------------~~~G~~~--v~L~-~~G~~YFic 121 (188)
.-.|-++.|+|.+ |++..| +...+..+.. .+.+.. ...|.+. +..+ ++|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 4478899999873 999888 3333344421 122210 1133332 2223 589999999
Q ss_pred CCCCCCCCCCeEEEEEecCCCC
Q 039052 122 GTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 122 ~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
+++||=+.||-..+.|...-..
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred cCCChhhcCCEEEEEEecCccc
Confidence 9999999999999999876543
No 12
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.50 E-value=0.012 Score=47.11 Aligned_cols=31 Identities=19% Similarity=0.526 Sum_probs=27.9
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+++++++|+|||.|..++|=+.||+-.|.|.
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 6778899999999999999999999888773
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.65 E-value=0.047 Score=40.34 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCce-EEEe--cCcccEEEEeCCCCCCCCCCeEEEEE
Q 039052 64 RNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKS-VFKL--DRPGPFYFISGTPDHCKNGQRLLVEV 137 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~-~v~L--~~~G~~YFic~~~~HC~~GmKl~I~V 137 (188)
..+++.|+.+.+.+.| .....+.-.+ .+-......|.+ ++++ +++|.|=|.|+...+ ||-.|.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~------~~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~liV 104 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD------LGISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTLIV 104 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG------GTEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-----
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC------CceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecccC
Confidence 5789999955555553 2223321112 111134455554 4555 899999999997553 6655544
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.71 E-value=0.077 Score=44.53 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=27.6
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 039052 112 DRPGPFYFISGTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 112 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
.++|.||++|+++||-+.||=..+.|...-..
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt~ 190 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVTT 190 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCccc
Confidence 47899999999999999999988888766443
No 15
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.02 E-value=0.021 Score=45.88 Aligned_cols=73 Identities=23% Similarity=0.505 Sum_probs=44.3
Q ss_pred eEecCceeEEEEeC-------------CeEEEEeccCCCCCCCC-CCcccc-------cCCceEEEe--c----------
Q 039052 66 RFHVGDSLSFEYKN-------------DSVLEVDKWGYYHCNSS-NATVAF-------NNGKSVFKL--D---------- 112 (188)
Q Consensus 66 ~F~VGDtLvF~y~~-------------hsV~~V~~~~Y~~C~~s-~p~~~~-------~~G~~~v~L--~---------- 112 (188)
..++||.|.+-=.. ..+++|++++|+.|+.. .+...+ ..|+.+|++ -
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 67789999986441 24889999999999963 332222 123444432 1
Q ss_pred -Ccc-cEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 039052 113 -RPG-PFYFISGT-----------PDHCKN-GQRLLVEVM 138 (188)
Q Consensus 113 -~~G-~~YFic~~-----------~~HC~~-GmKl~I~V~ 138 (188)
++| .||||+.- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 255 88999852 344764 689988874
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.33 E-value=0.35 Score=39.52 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=49.2
Q ss_pred cCCeEecCceeEEEEeC-----CeEEEEeccC-----C------CCCCCCCCc-ccccCCce---EEEecCcccEEEEeC
Q 039052 63 TRNRFHVGDSLSFEYKN-----DSVLEVDKWG-----Y------YHCNSSNAT-VAFNNGKS---VFKLDRPGPFYFISG 122 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~-----hsV~~V~~~~-----Y------~~C~~s~p~-~~~~~G~~---~v~L~~~G~~YFic~ 122 (188)
+...++.|.++.|.-.+ |....- +++ + +.=....+. .....|.. .+.+..+|.|=|+|.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~hef~~~-~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELKHEFTMD-APDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CcccccCCcEEeeeecCcccceEEEecc-CccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 45678889998887653 443322 111 0 100111111 23455554 678889999999999
Q ss_pred CCCCCCCCCeEEEEEe
Q 039052 123 TPDHCKNGQRLLVEVM 138 (188)
Q Consensus 123 ~~~HC~~GmKl~I~V~ 138 (188)
+++|=+.||.-.|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999985
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=89.44 E-value=0.69 Score=36.92 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=36.3
Q ss_pred cCCeEecCceeEEEEeC-CeE-EEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCC
Q 039052 63 TRNRFHVGDSLSFEYKN-DSV-LEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCK 128 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~-hsV-~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~ 128 (188)
+..+++.||.+.+.+.+ +.+ ..+.-.+|. . ......|.+ +++.+++|.|.|.|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSIDAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEECCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 45678999999988874 222 112222332 1 123444554 4677999999999997 664
No 18
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=87.76 E-value=2 Score=35.69 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=52.8
Q ss_pred eEEEecCCCCCCCCCCCCccccccc------ccCCeEecCceeEEEEeCCeEEEEeccCCCCCCCCCCcccccCCce---
Q 039052 37 KDFKVGDGFGWQEPGHNNTAMYSQW------ATRNRFHVGDSLSFEYKNDSVLEVDKWGYYHCNSSNATVAFNNGKS--- 107 (188)
Q Consensus 37 ~~~~VGg~~GW~~~p~~~~~~Y~~W------A~~~~F~VGDtLvF~y~~hsV~~V~~~~Y~~C~~s~p~~~~~~G~~--- 107 (188)
+..++|-.=.|.+. |.+. .+.-.+.+|+.+.|+-++.||.. +|--=+.... ..--.|..
T Consensus 92 ~i~v~~~qw~W~f~-------Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~H----sf~ip~~~~k-~da~PG~~~~~ 159 (201)
T TIGR02866 92 KVKVEGHQWYWSFD-------YPESRRGFTTVNELVVPAGTPVRLQVTSKDVIH----SFWVPELGGK-IDAIPGQYNAL 159 (201)
T ss_pred EEEEEEEEeEEEEE-------cCCcCCCccccCEEEEEcCCEEEEEEEeCchhh----cccccccCce-EEecCCcEEEE
Confidence 34556655567653 4443 12235778999999887644432 1111011111 11223432
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKN---GQRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~---GmKl~I~V~~~ 140 (188)
.++.+++|.|++.|++ .|.. .|++.|.|.+.
T Consensus 160 ~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 160 WFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEEeCCCEEEEEEehh--hCCcCccCCeEEEEEECH
Confidence 5788999999999997 5554 49999988754
No 19
>PRK02888 nitrous-oxide reductase; Validated
Probab=87.70 E-value=1.9 Score=42.31 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=43.7
Q ss_pred CCeEecCceeEEEEeC-CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCC---CCeEEEE
Q 039052 64 RNRFHVGDSLSFEYKN-DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKN---GQRLLVE 136 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~---GmKl~I~ 136 (188)
..++++||.+.|...+ +.+.-|.. .|.--.. +-......|.+ .|+.++||.|||.|+. .|-. +|+-.|.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViH-GF~Ip~~-nI~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H~~M~G~~i 631 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTH-GFAIPNY-GVNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALHMEMRGRML 631 (635)
T ss_pred eEEecCCCEEEEEEEeCCccccccc-ceeeccc-CccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCcccceEEEE
Confidence 4678999999999985 22211110 1111111 11122334543 5778999999999997 4554 6888888
Q ss_pred Eec
Q 039052 137 VMG 139 (188)
Q Consensus 137 V~~ 139 (188)
|.+
T Consensus 632 Vep 634 (635)
T PRK02888 632 VEP 634 (635)
T ss_pred EEe
Confidence 865
No 20
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=84.96 E-value=1.8 Score=33.26 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCeEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCC---CeE
Q 039052 64 RNRFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNG---QRL 133 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~G---mKl 133 (188)
.-.+..|+.+.|+-++ |+-.. .++. -...--+|.. .++.+++|.|++.|.. .|-.| |+.
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i---p~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~ 115 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI---PELG------IKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPG 115 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE---TTCT------EEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EE
T ss_pred eecccccceEeEEEEcCCccccccc---cccC------cccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeE
Confidence 3467889999999874 54443 1111 1112234543 5778999999999996 88887 888
Q ss_pred EEEEe
Q 039052 134 LVEVM 138 (188)
Q Consensus 134 ~I~V~ 138 (188)
.|.|.
T Consensus 116 ~v~VV 120 (120)
T PF00116_consen 116 KVIVV 120 (120)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88763
No 21
>PLN02604 oxidoreductase
Probab=81.17 E-value=14 Score=35.47 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=48.7
Q ss_pred CCeEecCceeEEEEeC-----------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN-----------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-----------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~ 129 (188)
..+++.||+++++..| |.+.+.....+|. ...........|.+ .|+++.+|++||=|-...|-..
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG-~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 134 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG-TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREA 134 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC-CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhC
Confidence 4588999999988764 2232211111111 00000012344543 6778899999999999899999
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
||.-.|.|....
T Consensus 135 Gl~G~liV~~~~ 146 (566)
T PLN02604 135 GLYGSIRVSLPR 146 (566)
T ss_pred CCeEEEEEEecC
Confidence 999999998654
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=80.96 E-value=7.6 Score=34.47 Aligned_cols=75 Identities=27% Similarity=0.320 Sum_probs=47.6
Q ss_pred CeEecCceeEEEEeCC-------eEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCC----CCCCCCC
Q 039052 65 NRFHVGDSLSFEYKND-------SVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGT----PDHCKNG 130 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~h-------sV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~----~~HC~~G 130 (188)
.+++.||.+..++.|+ ++..=-.... +..........|.+ .|+++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 5788999999888753 2221100000 01111222455654 6778899999999995 4577889
Q ss_pred CeEEEEEecCCC
Q 039052 131 QRLLVEVMGLHP 142 (188)
Q Consensus 131 mKl~I~V~~~~~ 142 (188)
|.-.+.|.....
T Consensus 138 l~G~liV~~~~~ 149 (311)
T TIGR02376 138 MNGAIMVLPREG 149 (311)
T ss_pred cceEEEeeccCC
Confidence 999999987543
No 23
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=80.22 E-value=5.4 Score=34.71 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=28.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecCCC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGLHP 142 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~~~ 142 (188)
.++.+++|.|+.+|.+ .|..| |++.|.|.+...
T Consensus 180 ~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 180 WLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEecCCCeEEEEEcHh--hcCCCcccceEEEEEEcHHH
Confidence 5778999999999996 77765 999999987654
No 24
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=79.61 E-value=8.9 Score=32.10 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=26.8
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecCC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGLH 141 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~~ 141 (188)
.++.+++|.|+..|++ .|..| |++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 4667899999999996 78875 99999998764
No 25
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=71.46 E-value=4.2 Score=30.97 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=45.6
Q ss_pred CCeEecCceeEEEEeC-----CeEEEE----ecc-CCCCCCCCCCcccccCCce---EEEecC-cccEEEEeCCCCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN-----DSVLEV----DKW-GYYHCNSSNATVAFNNGKS---VFKLDR-PGPFYFISGTPDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-----hsV~~V----~~~-~Y~~C~~s~p~~~~~~G~~---~v~L~~-~G~~YFic~~~~HC~~ 129 (188)
..+++.||.|..++.| +++.-= ... ..|. ....+......|.+ .|+++. +|++||-|-..+|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG-~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDG-VPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSG-GTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCC-cccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 3588999999999974 343321 111 0111 00001112334443 677888 9999999998775448
Q ss_pred CCeEEEEEecC
Q 039052 130 GQRLLVEVMGL 140 (188)
Q Consensus 130 GmKl~I~V~~~ 140 (188)
||--.|.|...
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99888888754
No 26
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=70.02 E-value=31 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~ 140 (188)
.++| +||+|-|+|+. | ..||-.|+|...
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4556 69999999976 4 335777888754
No 27
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=68.97 E-value=3 Score=25.72 Aligned_cols=25 Identities=20% Similarity=0.702 Sum_probs=15.1
Q ss_pred ccccccCCeEecCceeEEEEeCCeEEEE
Q 039052 58 YSQWATRNRFHVGDSLSFEYKNDSVLEV 85 (188)
Q Consensus 58 Y~~WA~~~~F~VGDtLvF~y~~hsV~~V 85 (188)
|.+|..++....||.+.|+ ..+.+-
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~---g~~y~a 25 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN---GKLYQA 25 (41)
T ss_dssp --B--TTCEE-TT-EEEET---TEEEEE
T ss_pred CCCcCCCCEEcCCCEEEEC---CCEEEE
Confidence 5689999999999999986 555553
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=65.65 E-value=66 Score=31.03 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=47.8
Q ss_pred CeEecCceeEEEEeC----------CeEEEEeccCCC-----CCCCCCCcccccCCce---EEEe-cCcccEEEEeCCCC
Q 039052 65 NRFHVGDSLSFEYKN----------DSVLEVDKWGYY-----HCNSSNATVAFNNGKS---VFKL-DRPGPFYFISGTPD 125 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~----------hsV~~V~~~~Y~-----~C~~s~p~~~~~~G~~---~v~L-~~~G~~YFic~~~~ 125 (188)
.+++.||+|+.+..| |.+.|-.....| .|- ...|.+ .|++ +.+|+|||=+-...
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcp-------I~PG~sf~Y~F~~~~q~GT~WYHsH~~~ 132 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCP-------IPPGTNFTYHFQPKDQIGSYFYYPSTGM 132 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCC-------CCCCCcEEEEEEeCCCCcceEEecCccc
Confidence 478899999988763 566664222222 242 223433 5676 47899999998888
Q ss_pred CCCCCCeEEEEEecCC
Q 039052 126 HCKNGQRLLVEVMGLH 141 (188)
Q Consensus 126 HC~~GmKl~I~V~~~~ 141 (188)
+-..|+.-.|.|....
T Consensus 133 Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 133 HRAAGGFGGLRVNSRL 148 (552)
T ss_pred eecCCccceEEEcCCc
Confidence 8888999888887653
No 29
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=59.79 E-value=17 Score=28.66 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCc-eEEEec----Cccc-EEEEeCCCCCCCCCCeEEEE
Q 039052 103 NNGK-SVFKLD----RPGP-FYFISGTPDHCKNGQRLLVE 136 (188)
Q Consensus 103 ~~G~-~~v~L~----~~G~-~YFic~~~~HC~~GmKl~I~ 136 (188)
..|. +.|+++ ++|. |=|+|+.+||=. .||-.++
T Consensus 86 ggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 86 GGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3443 356665 3674 999999999986 6876654
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=57.21 E-value=36 Score=32.52 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=48.7
Q ss_pred CCeEecCceeEEEEeC-----------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN-----------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-----------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~ 129 (188)
..+++.||.|+++..| |.+.+......|.= ..-.......|.+ .|+++.+|++||=|-...|-..
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~-~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGT-AGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCC-CccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 3588999999998764 22222111101110 0000011234443 6778999999999999889999
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
||.-.|.|....
T Consensus 112 Gl~G~liV~~~~ 123 (541)
T TIGR03388 112 GLYGSLIVDVPD 123 (541)
T ss_pred cceEEEEEecCC
Confidence 999999998654
No 31
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.39 E-value=16 Score=30.98 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |++.|.|...
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5678999999999996 78776 8988888753
No 32
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=54.73 E-value=39 Score=32.90 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCCCCCCCcccccccccCCeEecCceeEEEEeC-----Ce-----E-EEEeccC--CCCCCCCCCcccccCCce---EEE
Q 039052 47 WQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN-----DS-----V-LEVDKWG--YYHCNSSNATVAFNNGKS---VFK 110 (188)
Q Consensus 47 W~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~-----hs-----V-~~V~~~~--Y~~C~~s~p~~~~~~G~~---~v~ 110 (188)
|+++. ..|.. +...+++.||.+.+.+.| |. . .++...+ |.. ..+. .....|.+ .|.
T Consensus 488 wtiNG----~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dT-v~V~Pg~t~~~~f~ 559 (587)
T TIGR01480 488 WSFDG----EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHT-VDVPPGGKRSFRVT 559 (587)
T ss_pred EEECC----ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCc-eeeCCCCEEEEEEE
Confidence 88862 33443 235689999999999974 32 2 3442211 110 0011 12234443 567
Q ss_pred ecCcccEEEEeCCCCCCCCCCeEEEEE
Q 039052 111 LDRPGPFYFISGTPDHCKNGQRLLVEV 137 (188)
Q Consensus 111 L~~~G~~YFic~~~~HC~~GmKl~I~V 137 (188)
.+.+|+++|=|-...|=+.||--.+.|
T Consensus 560 ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 560 ADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 789999999999999999999877766
No 33
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=53.60 E-value=67 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=17.8
Q ss_pred cCCeEecCceeEEEEeC------CeEEEEe
Q 039052 63 TRNRFHVGDSLSFEYKN------DSVLEVD 86 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~------hsV~~V~ 86 (188)
..+.++.||.++|+.+. |.|+.+.
T Consensus 57 ~~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 57 DPNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred ccCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 34578999999999752 6677663
No 34
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.56 E-value=22 Score=30.31 Aligned_cols=30 Identities=23% Similarity=0.538 Sum_probs=24.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5678999999999996 77765 888888764
No 35
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=51.10 E-value=8.6 Score=27.58 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.7
Q ss_pred cCCeEecCceeEEE
Q 039052 63 TRNRFHVGDSLSFE 76 (188)
Q Consensus 63 ~~~~F~VGDtLvF~ 76 (188)
+.+.|+|||.|.++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 35789999999886
No 36
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=50.88 E-value=23 Score=29.15 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=23.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.||..|.. -|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999996 66654 888888764
No 37
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.42 E-value=24 Score=29.99 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=25.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|++ -|..| |++.|.|...
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5678899999999996 77776 8888887653
No 38
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.75 E-value=25 Score=29.82 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=25.2
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|++ -|..| |++.|.|...
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5678999999999996 78776 8888887653
No 39
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.70 E-value=26 Score=30.00 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=24.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |++.|.|...
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 4667899999999996 67654 8888887653
No 40
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=46.41 E-value=10 Score=29.09 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.6
Q ss_pred CeEecCceeEEEE
Q 039052 65 NRFHVGDSLSFEY 77 (188)
Q Consensus 65 ~~F~VGDtLvF~y 77 (188)
+.|++||.|+|+=
T Consensus 30 ~~ikvGD~I~f~~ 42 (109)
T cd06555 30 QQIKVGDKILFND 42 (109)
T ss_pred hcCCCCCEEEEEE
Confidence 6899999999964
No 41
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.22 E-value=29 Score=29.55 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.||-.|++ -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5678999999999996 77765 888888764
No 42
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=46.06 E-value=28 Score=29.70 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=24.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 5678999999999996 67765 8888877643
No 43
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.01 E-value=32 Score=29.36 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=25.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999996 77766 8888887653
No 44
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=44.53 E-value=16 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=20.2
Q ss_pred CeEecCceeEEEEeC-C--eEEEEeccCC
Q 039052 65 NRFHVGDSLSFEYKN-D--SVLEVDKWGY 90 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-h--sV~~V~~~~Y 90 (188)
+++++||++---|++ | +|..+.+++.
T Consensus 4 ~~~~~GD~VyViYrNPHt~~VanIqeAei 32 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPHTQDVANIQEAEI 32 (75)
T ss_pred cccCCCCEEEEEEcCCCCccccccchhhe
Confidence 789999999888886 5 7777765543
No 45
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=43.70 E-value=34 Score=29.23 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=25.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.|+-.|.+ -|..| |++.|.|...
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5788999999999995 77765 8888888653
No 46
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=41.94 E-value=38 Score=26.47 Aligned_cols=17 Identities=29% Similarity=0.469 Sum_probs=14.4
Q ss_pred CeEecCceeEEEEeC-Ce
Q 039052 65 NRFHVGDSLSFEYKN-DS 81 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-hs 81 (188)
++|++||.+.|-++. |+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 489999999999985 44
No 47
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=41.01 E-value=38 Score=29.15 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=25.3
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. .|..| |++.|.|...
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678999999999995 78776 8888887653
No 48
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=39.52 E-value=43 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||-.|++ -|..| |++.|.|...
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6788999999999995 78775 8999988753
No 49
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.42 E-value=41 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=24.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5678999999999996 67665 8888887653
No 50
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.29 E-value=12 Score=30.89 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.8
Q ss_pred eEecCceeEEEEe-C-----CeEEEE
Q 039052 66 RFHVGDSLSFEYK-N-----DSVLEV 85 (188)
Q Consensus 66 ~F~VGDtLvF~y~-~-----hsV~~V 85 (188)
.+++||.++|+.+ + |.|+.+
T Consensus 77 p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 77 PIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred cceeccEEEEEECCccCchhHHHHHH
Confidence 5899999999998 2 777766
No 51
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=38.81 E-value=86 Score=30.71 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=48.8
Q ss_pred CeEecCceeEEEEeC----------CeEEEEeccCCC-----CCCCCCCcccccCCce---EEEe-cCcccEEEEeCCCC
Q 039052 65 NRFHVGDSLSFEYKN----------DSVLEVDKWGYY-----HCNSSNATVAFNNGKS---VFKL-DRPGPFYFISGTPD 125 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~----------hsV~~V~~~~Y~-----~C~~s~p~~~~~~G~~---~v~L-~~~G~~YFic~~~~ 125 (188)
.+++.||+|+.+..| |.+.|-.....| .|-. ..|.+ +|++ +.+|++||=+-...
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI-------~PG~sftY~F~~~dq~GT~WYHsH~~~ 134 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAI-------PAGWNWTYQFQVKDQVGSFFYAPSTAL 134 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCc-------CCCCcEEEEEEeCCCCceeEeeccchh
Confidence 378899999988753 666664221122 3422 23433 6777 58999999998888
Q ss_pred CCCCCCeEEEEEecCC
Q 039052 126 HCKNGQRLLVEVMGLH 141 (188)
Q Consensus 126 HC~~GmKl~I~V~~~~ 141 (188)
+-..|+.-.|.|....
T Consensus 135 Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 135 HRAAGGYGAITINNRD 150 (596)
T ss_pred hhhCcCeeEEEEcCcc
Confidence 8888999999998654
No 52
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=38.64 E-value=50 Score=24.71 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=27.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
++..+.+|.+.|=|-+..|=..||-..+.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 56678999999999999999999999998864
No 53
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.26 E-value=42 Score=28.75 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=24.9
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |.+.|.|...
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 4678999999999996 77765 8888887653
No 54
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.11 E-value=44 Score=28.48 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=24.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeCH
Confidence 4678999999999996 67654 8888887653
No 55
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=36.15 E-value=28 Score=25.68 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=30.7
Q ss_pred eeEEEecCCC---CCCCCC-----CCCcccccccccCCeEecCceeEEEEe
Q 039052 36 VKDFKVGDGF---GWQEPG-----HNNTAMYSQWATRNRFHVGDSLSFEYK 78 (188)
Q Consensus 36 a~~~~VGg~~---GW~~~p-----~~~~~~Y~~WA~~~~F~VGDtLvF~y~ 78 (188)
...|+||+.. .|+... +.....|..|.....+..|..+.|||-
T Consensus 19 e~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 19 EFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred CEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEE
Confidence 3558899853 498521 112357888988888889999999995
No 56
>PLN02835 oxidoreductase
Probab=35.56 E-value=4.1e+02 Score=25.55 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=47.3
Q ss_pred CeEecCceeEEEEeC----------CeEEEEeccCCCCCCCCCCcccccCCce---EEEe-cCcccEEEEeCCCCCCCCC
Q 039052 65 NRFHVGDSLSFEYKN----------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKL-DRPGPFYFISGTPDHCKNG 130 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~----------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L-~~~G~~YFic~~~~HC~~G 130 (188)
.+++.||+|+.+..| |.+.|-.....|.= .....-...|.+ .|++ +.+|+|||=+-...+-..|
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv--~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~G 139 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGV--LGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAG 139 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCC--ccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCc
Confidence 478999999988763 56666532222320 000111233443 5665 5799999999877777789
Q ss_pred CeEEEEEecC
Q 039052 131 QRLLVEVMGL 140 (188)
Q Consensus 131 mKl~I~V~~~ 140 (188)
+.-.+.|...
T Consensus 140 l~G~lIV~~~ 149 (539)
T PLN02835 140 GFGAINVYER 149 (539)
T ss_pred ccceeEEeCC
Confidence 9888888643
No 57
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.13 E-value=57 Score=28.58 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=25.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||-.|+. -|..| |.+.|.|...
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5678999999999995 67765 8888887653
No 58
>PLN02191 L-ascorbate oxidase
Probab=32.28 E-value=1.4e+02 Score=28.82 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=46.5
Q ss_pred CeEecCceeEEEEeC-----------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCC
Q 039052 65 NRFHVGDSLSFEYKN-----------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNG 130 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-----------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~G 130 (188)
.+++.||+|+.+..| |.+.+-....+|.=. .....-...|.+ .|+++.+|+|||=|-...+-..|
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~-gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA-GVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC-ccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 478899999887764 233322111111100 000011233443 67888999999999988888899
Q ss_pred CeEEEEEecC
Q 039052 131 QRLLVEVMGL 140 (188)
Q Consensus 131 mKl~I~V~~~ 140 (188)
+.-.|.|...
T Consensus 135 l~G~liV~~~ 144 (574)
T PLN02191 135 LYGSLIVDVA 144 (574)
T ss_pred CEEEEEEccC
Confidence 9999999743
No 59
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=31.42 E-value=16 Score=31.53 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=0.0
Q ss_pred Cccccchh-----hhhhhHHHHHHHHHHHH
Q 039052 1 MKQTKMWS-----SLLSFHGTCVLLLLTLV 25 (188)
Q Consensus 1 ~~~~~~~~-----~~~~~~~~~~~l~~~~~ 25 (188)
|+-+|||| |||+|+..++.+++++.
T Consensus 65 mglgkms~~is~~wflsfpl~i~~iv~vmf 94 (233)
T PF10643_consen 65 MGLGKMSSRISDKWFLSFPLSIFVIVAVMF 94 (233)
T ss_dssp ------------------------------
T ss_pred HHHHHHhhhhccCeeeechhHHHHHHHHHH
Confidence 67788865 89999987776655443
No 60
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.60 E-value=70 Score=27.33 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=23.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.||-.|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 4567899999999996 67765 888887764
No 61
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=30.33 E-value=2.8e+02 Score=22.03 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=32.0
Q ss_pred CeEecCceeEEEEe--C----CeEEEEeccCCCCCC--CCCCcccccCCceEEEecCcccEEEEe
Q 039052 65 NRFHVGDSLSFEYK--N----DSVLEVDKWGYYHCN--SSNATVAFNNGKSVFKLDRPGPFYFIS 121 (188)
Q Consensus 65 ~~F~VGDtLvF~y~--~----hsV~~V~~~~Y~~C~--~s~p~~~~~~G~~~v~L~~~G~~YFic 121 (188)
..+++||.|.|+-- . +--+.+.......=. ......+-.+|...|++.++|.+.+-.
T Consensus 145 ~~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 145 YKLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred ccccCCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 35789999988753 2 434444222211100 011123345677789999999987654
No 62
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.84 E-value=84 Score=26.96 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=25.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~~ 140 (188)
.++.+++|.||-.|++ -|..| |++.|.|...
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEECH
Confidence 5678999999999996 67765 8988887653
No 63
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=28.07 E-value=33 Score=21.68 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=23.9
Q ss_pred EecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeCC
Q 039052 40 KVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKND 80 (188)
Q Consensus 40 ~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~h 80 (188)
+||.+.+=+.| .+|+..-.++.||.|.+.++.+
T Consensus 2 kvg~s~~v~iP--------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP--------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE---------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC--------HHHHHHcCCCCCCEEEEEEeCC
Confidence 45555555555 3677777889999999999965
No 64
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=27.53 E-value=74 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=11.8
Q ss_pred CCCCCCCCCCcccccccccCCeEecCcee
Q 039052 45 FGWQEPGHNNTAMYSQWATRNRFHVGDSL 73 (188)
Q Consensus 45 ~GW~~~p~~~~~~Y~~WA~~~~F~VGDtL 73 (188)
.||..-++.+..+-.+--+.-.|+.+-.|
T Consensus 147 lgWVav~~tP~p~vke~~daa~FY~NrvL 175 (480)
T KOG2675|consen 147 LGWVAVKPTPAPYVKEFKDAAQFYTNRVL 175 (480)
T ss_pred ceeEecCCCCchHHHHHHHHHHHHHHHHH
Confidence 36655443333333332233345544444
No 65
>PLN02792 oxidoreductase
Probab=27.39 E-value=2.1e+02 Score=27.54 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred eEecCceeEEEEeC----------CeEEEEeccCCCCCCCCCCcccccCCce---EEEe-cCcccEEEEeCCCCCCCCCC
Q 039052 66 RFHVGDSLSFEYKN----------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKL-DRPGPFYFISGTPDHCKNGQ 131 (188)
Q Consensus 66 ~F~VGDtLvF~y~~----------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L-~~~G~~YFic~~~~HC~~Gm 131 (188)
+++.||+|+-+..| |.+.|-.....|. ......-...|.+ .|++ +.+|+|||=+-...+-..|+
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DG--v~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 127 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDG--VYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGG 127 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCC--CCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccc
Q ss_pred eEEEEEecCC
Q 039052 132 RLLVEVMGLH 141 (188)
Q Consensus 132 Kl~I~V~~~~ 141 (188)
.-.+.|....
T Consensus 128 ~G~liI~~~~ 137 (536)
T PLN02792 128 YGSLRIYSLP 137 (536)
T ss_pred ccceEEeCCc
No 66
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=26.91 E-value=36 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=14.1
Q ss_pred ccccccCCeEecCceeEEE
Q 039052 58 YSQWATRNRFHVGDSLSFE 76 (188)
Q Consensus 58 Y~~WA~~~~F~VGDtLvF~ 76 (188)
|..|..++.-..||.+.++
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~~ 19 (41)
T smart00495 1 APAWQAGTVYTAGDVVSYN 19 (41)
T ss_pred CCccCCCCcCcCCCEEEEC
Confidence 4567777777788888764
No 67
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=1.4e+02 Score=29.28 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=43.3
Q ss_pred cccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCc--cc---ccCCce-EEEecCcccEEEEeC
Q 039052 61 WATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNAT--VA---FNNGKS-VFKLDRPGPFYFISG 122 (188)
Q Consensus 61 WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~--~~---~~~G~~-~v~L~~~G~~YFic~ 122 (188)
=-++|+|.--|.+.|+|++ ..++.+...|.|.-+.+--- .. -.+|++ .|.|.+.|+-|=+|=
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 3467899999999999995 66777777777765544211 11 124665 789999999887664
No 68
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.44 E-value=1.6e+02 Score=28.68 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=35.6
Q ss_pred ccCCce--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 039052 102 FNNGKS--VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 102 ~~~G~~--~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
+-.|-+ +|.+|-||..+|=|-+-.|=..||++...|......
T Consensus 498 ~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 498 PPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred CCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 445555 567889999999999999999999999999987765
No 69
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=24.70 E-value=36 Score=29.29 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=46.4
Q ss_pred CeEecCceeEEEEeCCeEEEE--eccCCCCCCCCCCcccc-----------cCCce--E--E----EecCcccEEEEeCC
Q 039052 65 NRFHVGDSLSFEYKNDSVLEV--DKWGYYHCNSSNATVAF-----------NNGKS--V--F----KLDRPGPFYFISGT 123 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~hsV~~V--~~~~Y~~C~~s~p~~~~-----------~~G~~--~--v----~L~~~G~~YFic~~ 123 (188)
..-++||.++|+|-.+..+.+ |++.|+.-....+...| ..|++ + + .-...|.-|++-..
T Consensus 78 ~~pk~GD~vil~~~Y~rallIAPn~e~Y~~i~~~~~~i~fihpDl~aa~L~~~g~~P~~~dfrkfc~~~svGli~iv~~n 157 (218)
T PF15436_consen 78 MVPKKGDEVILNYLYNRALLIAPNQETYEKIKSSYPNINFIHPDLFAAFLSENGHDPTREDFRKFCNQYSVGLIFIVLKN 157 (218)
T ss_pred cccCCCCEEEEeecccceEEEcCCHHHHHHHHHhCCCceEecHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCEEEEEEcC
Confidence 467899999999998776666 78888765444332111 12321 0 0 02235777777765
Q ss_pred C---CCCCCCCeEEEEEec
Q 039052 124 P---DHCKNGQRLLVEVMG 139 (188)
Q Consensus 124 ~---~HC~~GmKl~I~V~~ 139 (188)
. -.|+....|...-..
T Consensus 158 ~~~~lDcqSF~iL~~~~~~ 176 (218)
T PF15436_consen 158 KLYILDCQSFAILEKKPFD 176 (218)
T ss_pred cEEEEecCceeEEEEEecc
Confidence 3 578888777665544
No 70
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=24.38 E-value=2.5e+02 Score=19.57 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=11.9
Q ss_pred eEecCceeEEEEe
Q 039052 66 RFHVGDSLSFEYK 78 (188)
Q Consensus 66 ~F~VGDtLvF~y~ 78 (188)
.|++||.|.|.++
T Consensus 2 ~~~~Ge~v~~~~~ 14 (83)
T PF14326_consen 2 VYRVGERVRFRVT 14 (83)
T ss_pred cccCCCEEEEEEE
Confidence 6899999999998
No 71
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.28 E-value=61 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.1
Q ss_pred ccccccccCCeEecCceeEEEEe
Q 039052 56 AMYSQWATRNRFHVGDSLSFEYK 78 (188)
Q Consensus 56 ~~Y~~WA~~~~F~VGDtLvF~y~ 78 (188)
....+|+...+.++||.|.|...
T Consensus 26 ~~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 26 LSITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEEecCCCcccCCCEEEEEEE
Confidence 45678999999999999999876
No 72
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.95 E-value=98 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=24.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.|+-.|.. .|..| |++.|.|..
T Consensus 194 ~~~a~~~G~Y~G~CaE--yCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEcCCCEEEEEEChh--hcCccccCCeEEEEEEC
Confidence 5678999999999995 77765 999988763
No 73
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=23.57 E-value=33 Score=24.24 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=11.8
Q ss_pred ccCCeEecCceeEEEEeC
Q 039052 62 ATRNRFHVGDSLSFEYKN 79 (188)
Q Consensus 62 A~~~~F~VGDtLvF~y~~ 79 (188)
+..+.+++||.++|.+.+
T Consensus 69 v~~n~L~~GD~~~F~~~~ 86 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIG 86 (100)
T ss_dssp HHHCT--TT-EEEEEE-S
T ss_pred HHHcCCCCCCEEEEEEec
Confidence 566789999999999974
No 74
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.84 E-value=2e+02 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=12.6
Q ss_pred CCeEecCceeEEEEe
Q 039052 64 RNRFHVGDSLSFEYK 78 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~ 78 (188)
++....|+.+.++|+
T Consensus 31 ~~~~v~g~~v~V~~~ 45 (181)
T PF05753_consen 31 NKYLVEGEDVTVTYT 45 (181)
T ss_pred cccccCCcEEEEEEE
Confidence 456778999999998
No 75
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.83 E-value=76 Score=24.33 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=4.5
Q ss_pred chhhhhhhHH
Q 039052 6 MWSSLLSFHG 15 (188)
Q Consensus 6 ~~~~~~~~~~ 15 (188)
||++|+.+..
T Consensus 1 RW~l~~iii~ 10 (130)
T PF12273_consen 1 RWVLFAIIIV 10 (130)
T ss_pred CeeeHHHHHH
Confidence 3555444433
No 76
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.72 E-value=41 Score=23.54 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=10.1
Q ss_pred eeeeEEEecCCCCCC
Q 039052 34 EAVKDFKVGDGFGWQ 48 (188)
Q Consensus 34 ~~a~~~~VGg~~GW~ 48 (188)
.+|-+|.-|++--..
T Consensus 20 Q~APQYa~GeeP~YD 34 (65)
T PF10731_consen 20 QSAPQYAPGEEPSYD 34 (65)
T ss_pred hcCcccCCCCCCCcC
Confidence 457788888864443
No 77
>PLN02168 copper ion binding / pectinesterase
Probab=22.46 E-value=3e+02 Score=26.59 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=47.5
Q ss_pred CeEecCceeEEEEeC----------CeEEEEeccCCCC-CCCCCCcccccCCce---EEEe-cCcccEEEEeCCCCCCCC
Q 039052 65 NRFHVGDSLSFEYKN----------DSVLEVDKWGYYH-CNSSNATVAFNNGKS---VFKL-DRPGPFYFISGTPDHCKN 129 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~----------hsV~~V~~~~Y~~-C~~s~p~~~~~~G~~---~v~L-~~~G~~YFic~~~~HC~~ 129 (188)
.+++.||+|+.+..| |.+.|-.....|. ...--|| ..|.+ .|++ +.+|+|||=+-...+=..
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~ 135 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI---LPGTNWTYRFQVKDQIGSYFYFPSLLLQKAA 135 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC---CCCCcEEEEEEeCCCCceEEEecChhhhhhC
Confidence 489999999999873 5565543322222 0000122 33432 6777 479999999877666667
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
|+.-.+.|....
T Consensus 136 GL~G~lII~~~~ 147 (545)
T PLN02168 136 GGYGAIRIYNPE 147 (545)
T ss_pred cceeEEEEcCCc
Confidence 998888887644
No 78
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=22.37 E-value=83 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.432 Sum_probs=31.7
Q ss_pred eeEEEecCCC---CCCCCCC--CC----cccccccccCCeEecCceeEEEEe
Q 039052 36 VKDFKVGDGF---GWQEPGH--NN----TAMYSQWATRNRFHVGDSLSFEYK 78 (188)
Q Consensus 36 a~~~~VGg~~---GW~~~p~--~~----~~~Y~~WA~~~~F~VGDtLvF~y~ 78 (188)
...|+||+.. .|+..-. .. ..+|..|...-.+..|..+.|||-
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 4668999964 4986321 11 136789999889999999999996
No 79
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=51 Score=30.32 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.2
Q ss_pred eEecCceeEEEEeCCe
Q 039052 66 RFHVGDSLSFEYKNDS 81 (188)
Q Consensus 66 ~F~VGDtLvF~y~~hs 81 (188)
..+.||+|+|.|+.|.
T Consensus 134 ~aq~gD~LvfHYSGHG 149 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSGHG 149 (362)
T ss_pred cCCCCCEEEEEecCCC
Confidence 3678999999999753
No 80
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=21.94 E-value=57 Score=28.42 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=20.6
Q ss_pred eEEEecCcccEEEEeCCCCCCCCC
Q 039052 107 SVFKLDRPGPFYFISGTPDHCKNG 130 (188)
Q Consensus 107 ~~v~L~~~G~~YFic~~~~HC~~G 130 (188)
+.+.+|.-|-+-|+|+.-+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 467788889999999999999874
No 81
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=21.75 E-value=88 Score=22.70 Aligned_cols=43 Identities=12% Similarity=0.277 Sum_probs=29.0
Q ss_pred eeEEEecCCC---CCCCCCC-C---CcccccccccCCeEecCceeEEEEe
Q 039052 36 VKDFKVGDGF---GWQEPGH-N---NTAMYSQWATRNRFHVGDSLSFEYK 78 (188)
Q Consensus 36 a~~~~VGg~~---GW~~~p~-~---~~~~Y~~WA~~~~F~VGDtLvF~y~ 78 (188)
...|++|+.. .|+.... . ....+..|.....+..|..+.|||-
T Consensus 18 ~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv 67 (99)
T cd05809 18 ETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAI 67 (99)
T ss_pred CEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEE
Confidence 3558899742 5975321 1 1133578988888999999999985
No 82
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=21.69 E-value=1e+02 Score=22.00 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=29.4
Q ss_pred EEEecCCC---CCCCCCCCCcccccccccCCeEecCceeEEEEe
Q 039052 38 DFKVGDGF---GWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK 78 (188)
Q Consensus 38 ~~~VGg~~---GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~ 78 (188)
.+++|+.. .|+..-+....++..|.....+..++.+.|||-
T Consensus 18 l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~ 61 (95)
T cd05813 18 VAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFV 61 (95)
T ss_pred EEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 36888752 588532223456778988888999999999985
No 83
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=20.55 E-value=2.2e+02 Score=27.88 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.9
Q ss_pred ccCCce--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 039052 102 FNNGKS--VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLH 141 (188)
Q Consensus 102 ~~~G~~--~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~~ 141 (188)
...|-. +|..|-||..+|=|-...|=-.||.+.+.|....
T Consensus 496 p~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 496 FPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred CCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCC
Confidence 345555 6778899999999998788778999999988555
No 84
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=20.16 E-value=3.8e+02 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=18.7
Q ss_pred CeEecCceeEEEEeCCeEEEEeccC
Q 039052 65 NRFHVGDSLSFEYKNDSVLEVDKWG 89 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~hsV~~V~~~~ 89 (188)
.-+.+||+-.|.+.++.+.++++..
T Consensus 114 ~~~~vGDsr~~~~~~~~~~~lt~dh 138 (254)
T cd00143 114 YVANVGDSRAVLCRNGEAVQLTKDH 138 (254)
T ss_pred EEEEecCcEEEEEcCCceeEcCCCC
Confidence 3568999999999877777775443
No 85
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.12 E-value=1.2e+02 Score=26.23 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=14.4
Q ss_pred eeeEEEecCCCCCCCCC
Q 039052 35 AVKDFKVGDGFGWQEPG 51 (188)
Q Consensus 35 ~a~~~~VGg~~GW~~~p 51 (188)
+...|..++..||.+-|
T Consensus 222 ~~~n~~~~g~~g~e~iP 238 (268)
T PF09451_consen 222 SWYNYNRYGARGFELIP 238 (268)
T ss_pred hheeeccCCCCCceecc
Confidence 46789999999998875
No 86
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=20.03 E-value=1e+02 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=19.4
Q ss_pred EEEecCCCCCCCCCCCCcccccccc-cCCeEecCceeEEE
Q 039052 38 DFKVGDGFGWQEPGHNNTAMYSQWA-TRNRFHVGDSLSFE 76 (188)
Q Consensus 38 ~~~VGg~~GW~~~p~~~~~~Y~~WA-~~~~F~VGDtLvF~ 76 (188)
..+|||+.| ..+..-|- .+..|+.||.|.|.
T Consensus 40 ~~kVaD~Tg--------sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG--------SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc--------eEEEEEecCcCcccCCccEEEec
Confidence 355777654 23344453 35789999988765
Done!