Query 039052
Match_columns 188
No_of_seqs 132 out of 805
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 9.2E-44 3.2E-48 280.8 6.0 112 35-148 2-117 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.5E-40 5.1E-45 252.8 6.5 104 36-142 2-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 7.4E-40 2.5E-44 251.5 7.7 105 37-143 2-109 (116)
4 2cbp_A Cucumber basic protein; 100.0 6.1E-38 2.1E-42 233.4 6.1 94 37-138 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.2E-33 4.3E-38 208.4 7.5 89 37-138 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 3.7E-11 1.3E-15 92.3 8.4 94 34-138 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 1.1E-10 3.6E-15 82.6 6.7 83 38-138 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 2.5E-10 8.5E-15 90.3 7.5 74 64-138 62-154 (154)
9 1iuz_A Plastocyanin; electron 98.8 6.8E-09 2.3E-13 75.0 5.6 88 38-138 3-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.8 5.6E-08 1.9E-12 74.4 10.3 92 35-138 17-139 (139)
11 2gim_A Plastocyanin; beta shee 98.7 9.4E-09 3.2E-13 74.6 4.9 88 38-138 5-105 (106)
12 1kdj_A Plastocyanin; electron 98.7 3E-08 1E-12 71.6 7.0 88 38-138 2-102 (102)
13 1pmy_A Pseudoazurin; electron 98.7 3.3E-08 1.1E-12 75.5 6.9 81 42-140 11-95 (123)
14 2plt_A Plastocyanin; electron 98.7 2E-08 6.7E-13 71.9 5.1 88 38-138 3-98 (98)
15 1paz_A Pseudoazurin precursor; 98.7 4.5E-08 1.5E-12 74.7 6.8 81 42-140 11-95 (123)
16 1plc_A Plastocyanin; electron 98.6 1E-07 3.6E-12 68.4 7.3 87 39-138 3-99 (99)
17 1b3i_A PETE protein, protein ( 98.6 1E-07 3.6E-12 68.1 7.1 85 39-138 5-97 (97)
18 1byp_A Protein (plastocyanin); 98.6 1.5E-07 5.2E-12 67.4 7.3 87 39-138 3-99 (99)
19 3erx_A Pseudoazurin; copper pr 98.6 5.9E-08 2E-12 74.2 5.0 69 63-139 21-94 (123)
20 3tu6_A Pseudoazurin (blue copp 98.6 6.2E-08 2.1E-12 74.6 5.2 83 41-141 11-98 (127)
21 1pcs_A Plastocyanin; electron 98.5 8.7E-08 3E-12 68.6 4.5 88 38-138 4-98 (98)
22 3ef4_A Pseudoazurin, blue copp 98.5 2.8E-07 9.5E-12 70.8 6.5 81 41-139 10-95 (124)
23 3c75_A Amicyanin; copper prote 98.1 4.6E-06 1.6E-10 63.8 6.8 68 64-138 61-132 (132)
24 4hci_A Cupredoxin 1; structura 98.0 6.7E-06 2.3E-10 59.3 5.4 64 64-138 29-100 (100)
25 3cvb_A Plastocyanin; cupredoxi 97.9 6.5E-05 2.2E-09 53.7 8.5 86 38-138 4-104 (105)
26 3ay2_A Lipid modified azurin p 97.8 9.7E-05 3.3E-09 59.3 8.9 90 37-138 43-166 (167)
27 1cuo_A Protein (azurin ISO-2); 97.7 0.00032 1.1E-08 53.7 10.4 88 39-138 5-128 (129)
28 2ux6_A Pseudoazurin; type-1 co 97.7 4.8E-05 1.7E-09 57.6 5.4 68 64-140 22-93 (122)
29 1id2_A Amicyanin; beta barrel, 97.6 0.00012 4.1E-09 53.5 6.4 68 64-138 35-106 (106)
30 2ov0_A Amicyanin; beta-sandwic 97.6 9.8E-05 3.4E-09 53.7 5.5 80 36-138 18-105 (105)
31 2iaa_C Azurin; quinoprotein, t 97.4 0.0011 3.8E-08 50.6 9.4 88 39-138 4-127 (128)
32 1nwp_A Azurin; electron transp 97.3 0.0013 4.5E-08 50.3 8.7 89 38-138 4-128 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.3 0.0014 4.7E-08 50.1 8.6 89 38-138 4-128 (129)
34 2x11_B Ephrin-A5; receptor-sig 97.2 0.00026 8.8E-09 57.6 4.1 75 65-143 52-166 (177)
35 1iko_P Ephrin-B2; greek KEY, g 97.2 7.4E-05 2.5E-09 60.8 0.5 76 67-142 26-143 (178)
36 2vsm_B Ephrin-B2; developmenta 97.0 0.00031 1.1E-08 55.1 2.6 73 67-139 25-139 (140)
37 1iby_A Nitrosocyanin; RED copp 96.9 0.0028 9.5E-08 46.1 6.9 64 64-138 39-111 (112)
38 3czu_B Ephrin-A1; ATP-binding, 96.7 0.0015 5E-08 53.3 4.7 75 65-143 50-164 (182)
39 1shx_A Ephrin-A5; ephrin signa 96.5 0.0024 8.2E-08 49.9 4.4 74 65-142 23-136 (138)
40 3d12_B Ephrin-B3; beta propell 96.5 0.0016 5.3E-08 51.1 3.0 73 66-138 23-140 (141)
41 2cua_A Protein (CUA); CUA cent 96.4 0.02 6.8E-07 43.9 8.8 64 64-138 61-134 (135)
42 2wo3_B Ephrin-A2; transferase- 95.4 0.012 3.9E-07 47.0 3.9 74 65-142 32-146 (157)
43 3s8f_B Cytochrome C oxidase su 95.1 0.091 3.1E-06 41.9 8.1 65 63-138 93-167 (168)
44 3fsa_A Azurin; copper, cupredo 93.7 0.99 3.4E-05 34.3 10.8 85 39-138 5-125 (125)
45 1fwx_A Nitrous oxide reductase 92.9 0.24 8.1E-06 46.7 7.5 66 64-140 514-593 (595)
46 2dv6_A Nitrite reductase; elec 92.8 0.14 4.8E-06 45.2 5.5 73 63-142 55-135 (447)
47 3sbq_A Nitrous-oxide reductase 91.1 0.71 2.4E-05 43.8 8.4 65 64-139 559-637 (638)
48 3hei_B Ephrin-A1; EPH receptor 84.6 0.38 1.3E-05 37.1 1.8 70 65-138 22-131 (132)
49 1yel_A AT1G16640; CESG, protei 71.7 1.5 5.1E-05 31.4 1.5 24 62-85 73-96 (104)
50 1mzy_A Copper-containing nitri 68.7 7.8 0.00027 32.7 5.6 74 65-141 66-154 (333)
51 1cyx_A CYOA; electron transpor 64.9 6.1 0.00021 32.3 4.0 63 65-138 43-115 (205)
52 3hb3_B Cytochrome C oxidase su 63.9 6 0.00021 34.1 3.9 65 66-141 192-266 (298)
53 1oe1_A Dissimilatory copper-co 62.9 11 0.00039 31.6 5.5 74 65-141 67-154 (336)
54 1oe1_A Dissimilatory copper-co 62.8 8.2 0.00028 32.6 4.6 35 108-142 286-321 (336)
55 2gsm_B Cytochrome C oxidase su 62.1 6.9 0.00024 32.9 3.9 63 66-139 174-246 (262)
56 1v54_B Cytochrome C oxidase po 60.2 6.5 0.00022 32.4 3.3 30 108-139 183-215 (227)
57 1mzy_A Copper-containing nitri 53.8 7.7 0.00026 32.7 2.9 34 108-141 286-320 (333)
58 1kbv_A ANIA, major outer membr 51.6 14 0.00048 31.2 4.2 74 64-141 71-158 (327)
59 3cg8_A Laccase; oxidoreductase 49.9 24 0.00083 30.1 5.4 32 112-143 279-310 (343)
60 2bw4_A Copper-containing nitri 49.3 24 0.00083 29.6 5.3 74 65-141 73-160 (340)
61 3gdc_A Multicopper oxidase; be 47.5 7 0.00024 32.5 1.5 32 108-139 257-288 (288)
62 3iuw_A Activating signal coint 45.7 7.9 0.00027 27.4 1.4 14 65-78 36-50 (83)
63 1sdd_A Coagulation factor V; c 44.9 2.8 9.7E-05 35.3 -1.3 33 108-140 269-301 (306)
64 3gdc_A Multicopper oxidase; be 44.3 39 0.0013 27.9 5.7 77 65-142 68-157 (288)
65 1fft_B Ubiquinol oxidase; elec 44.2 16 0.00054 31.6 3.3 67 64-138 152-225 (315)
66 2zoo_A Probable nitrite reduct 43.6 17 0.00058 31.7 3.5 74 64-141 61-148 (442)
67 3l6w_A Hemocyanin 1; cupredoxi 41.7 18 0.00063 33.3 3.5 73 64-138 412-491 (491)
68 2qcp_X Cation efflux system pr 39.8 18 0.0006 24.9 2.4 24 62-85 49-73 (80)
69 2vb2_X Copper protein, cation 39.2 18 0.00061 25.4 2.4 26 60-85 55-81 (88)
70 4i1k_A B3 domain-containing tr 38.3 12 0.00041 28.6 1.4 24 62-85 112-137 (146)
71 1kbv_A ANIA, major outer membr 35.1 24 0.00084 29.7 3.1 34 108-141 275-309 (327)
72 3tas_A Small laccase, multi-co 31.5 55 0.0019 27.3 4.7 32 113-144 245-276 (313)
73 3g5w_A Multicopper oxidase typ 30.8 1.2E+02 0.004 25.4 6.7 77 66-142 37-128 (318)
74 2zwn_A Two-domain type laccase 29.9 64 0.0022 27.2 4.8 77 66-142 38-129 (339)
75 2l55_A SILB,silver efflux prot 29.2 36 0.0012 23.4 2.6 26 60-85 41-68 (82)
76 2zoo_A Probable nitrite reduct 28.6 40 0.0014 29.3 3.4 35 108-142 265-300 (442)
77 4he6_A Peptidase family U32; u 27.7 21 0.00071 24.5 1.2 17 63-79 26-42 (89)
78 1xne_A Hypothetical protein PF 26.3 16 0.00056 27.0 0.4 12 65-76 33-44 (113)
79 2bw4_A Copper-containing nitri 25.8 67 0.0023 26.8 4.2 35 108-142 292-327 (340)
80 3kw8_A Laccase, putative coppe 25.4 42 0.0014 27.5 2.8 31 113-143 239-269 (276)
81 1sdd_B Coagulation factor V; c 24.3 37 0.0013 31.3 2.5 32 108-139 296-327 (647)
82 2uxt_A Protein SUFI, SUFI; oxi 23.0 64 0.0022 28.4 3.7 71 65-141 52-140 (451)
83 2k75_A Uncharacterized protein 22.2 37 0.0013 24.2 1.6 29 38-76 41-69 (106)
84 1aoz_A Ascorbate oxidase; oxid 21.5 1.8E+02 0.0062 26.1 6.5 76 64-141 35-125 (552)
85 2dv6_A Nitrite reductase; elec 20.6 73 0.0025 27.6 3.5 34 108-141 402-435 (447)
86 2z0t_A Putative uncharacterize 20.5 27 0.00094 25.6 0.6 12 65-76 32-43 (109)
87 3t9w_A Small laccase, multi-co 20.5 47 0.0016 27.7 2.2 32 112-143 260-291 (299)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=9.2e-44 Score=280.76 Aligned_cols=112 Identities=34% Similarity=0.635 Sum_probs=99.3
Q ss_pred eeeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEE-eccCCCCCCCCCCcccccCCceEEEe
Q 039052 35 AVKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEV-DKWGYYHCNSSNATVAFNNGKSVFKL 111 (188)
Q Consensus 35 ~a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V-~~~~Y~~C~~s~p~~~~~~G~~~v~L 111 (188)
+|++|+|||+.||+++++ ..+|++||++|+|+|||+|+|+|++ |+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence 478899999999999753 4689999999999999999999993 999999 99999999999999999999999999
Q ss_pred -cCcccEEEEeCCCCCCCCCCeEEEEEecCCCCCCCCC
Q 039052 112 -DRPGPFYFISGTPDHCKNGQRLLVEVMGLHPISQSPP 148 (188)
Q Consensus 112 -~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~~~~~p 148 (188)
+++|++||||++++||++||||+|+|.+..++++++|
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p 117 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP 117 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-------
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCC
Confidence 9999999999999999999999999998876644433
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.5e-40 Score=252.85 Aligned_cols=104 Identities=41% Similarity=0.804 Sum_probs=96.2
Q ss_pred eeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEecC
Q 039052 36 VKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDR 113 (188)
Q Consensus 36 a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~ 113 (188)
|++|+|||+.||++++ ..+|++||++++|+|||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|+++|+|++
T Consensus 2 a~~~~VG~~~GW~~~~---~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~ 78 (109)
T 1ws8_A 2 ATVHKVGDSTGWTTLV---PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR 78 (109)
T ss_dssp CCEEETTGGGCSCSSS---CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred CcEEEeCCCCCccCCC---CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECC
Confidence 6789999999999974 4689999999999999999999983 9999999999999999999999999999999999
Q ss_pred cccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 039052 114 PGPFYFISGTPDHCKNGQRLLVEVMGLHP 142 (188)
Q Consensus 114 ~G~~YFic~~~~HC~~GmKl~I~V~~~~~ 142 (188)
+|++||||++++||++||||+|+|.+..+
T Consensus 79 ~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 79 PGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp SEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CcCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 99999999999999999999999986644
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=7.4e-40 Score=251.53 Aligned_cols=105 Identities=30% Similarity=0.610 Sum_probs=94.7
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEe--CCeEEEEeccCCCCCCCCCCcccccCCceEEEecCc
Q 039052 37 KDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK--NDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRP 114 (188)
Q Consensus 37 ~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~--~hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~~ 114 (188)
++|+|||+.||+++. ...+|++||++++|+|||+|+|+|. +|+|+||++++|+.|+.++++..+++|++.|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~--~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPS--DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCS--STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSC
T ss_pred eEEEECCcCcCcCCC--CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCC
Confidence 479999999999862 3578999999999999999999998 399999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCCCCCCeEEE-EEecCCCC
Q 039052 115 GPFYFISGTPDHCKNGQRLLV-EVMGLHPI 143 (188)
Q Consensus 115 G~~YFic~~~~HC~~GmKl~I-~V~~~~~~ 143 (188)
|++||||++++||++||||+| +|.+.++.
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~~ 109 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGAG 109 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC----
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCCC
Confidence 999999999999999999999 77765443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.1e-38 Score=233.41 Aligned_cols=94 Identities=31% Similarity=0.684 Sum_probs=89.4
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccccCCceEEEecCc
Q 039052 37 KDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRP 114 (188)
Q Consensus 37 ~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~~ 114 (188)
++|+|||+.||++ +|++||++++|++||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|++.|+| ++
T Consensus 1 ~~~~VG~~~GW~~-------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGGWTF-------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGCSCS-------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CS
T ss_pred CEEEECCcCCCcc-------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cC
Confidence 4699999999997 39999999999999999999983 99999999999999999999999999999999 89
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 115 GPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 115 G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
|++||||++++||++||||+|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=1.2e-33 Score=208.37 Aligned_cols=89 Identities=28% Similarity=0.632 Sum_probs=83.3
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEe--CCeEEEEeccCCCCCCCCCCcccccCCceEEEecCc
Q 039052 37 KDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK--NDSVLEVDKWGYYHCNSSNATVAFNNGKSVFKLDRP 114 (188)
Q Consensus 37 ~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~--~hsV~~V~~~~Y~~C~~s~p~~~~~~G~~~v~L~~~ 114 (188)
++|+| ||+.+ ++||++++|++||+|+|+|. +|+|+||++++|+.|+.++++..+++|++.|+|+ +
T Consensus 1 ~~y~V----gW~~~--------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----GWSFN--------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----ECSSS--------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-S
T ss_pred CEEEE----eCCCC--------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-C
Confidence 36889 79973 79999999999999999998 3999999999999999999999999999999996 8
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 115 GPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 115 G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
|++||||++++||++||||+|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.21 E-value=3.7e-11 Score=92.32 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=63.7
Q ss_pred eeeeEEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC-------CeEEEEecc-CCCC------------
Q 039052 34 EAVKDFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN-------DSVLEVDKW-GYYH------------ 92 (188)
Q Consensus 34 ~~a~~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~-------hsV~~V~~~-~Y~~------------ 92 (188)
+..+++.|+-. .+|.+.| +..+++.||++.|.+.+ |+++..+.. ++..
T Consensus 14 ~~~~~v~V~~~~~~~~F~P-----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQ-----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSC-----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred CCCEEEEEEEeCCCceEeC-----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 34566777754 3588875 35689999999988753 888877321 1111
Q ss_pred --C---CCCCCc---ccccCCc---eEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 93 --C---NSSNAT---VAFNNGK---SVFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 93 --C---~~s~p~---~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
. +..+.+ .....|. ..|+++++|.|||+|++++||..|||..|+|.
T Consensus 83 ~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0 000100 1233443 36788899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.12 E-value=1.1e-10 Score=82.60 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCCc-eEEEec
Q 039052 38 DFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNGK-SVFKLD 112 (188)
Q Consensus 38 ~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G~-~~v~L~ 112 (188)
+..+|++ .+|.+.| +..++++||+|.|++.. |+|......++. ........|. ..++++
T Consensus 4 ~v~~~~~~~~~~f~P-----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~ 67 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP-----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFS 67 (91)
T ss_dssp EEEESCTTSCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECC
T ss_pred EEEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeC
Confidence 3556664 4677765 34689999999999872 898865432221 1112345554 478899
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 113 RPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 113 ~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++|.|+|+|. .||..||+..|.|.
T Consensus 68 ~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 68 EPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp SCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCEEEEEEeC--CCccCCCEEEEEEC
Confidence 9999999999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.07 E-value=2.5e-10 Score=90.27 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=58.2
Q ss_pred CCeEecCceeEEEEeC------CeEEEEe-ccCCCCCCCCCCcc-------cccCCc---e--EEEecCcccEEEEeCCC
Q 039052 64 RNRFHVGDSLSFEYKN------DSVLEVD-KWGYYHCNSSNATV-------AFNNGK---S--VFKLDRPGPFYFISGTP 124 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~------hsV~~V~-~~~Y~~C~~s~p~~-------~~~~G~---~--~v~L~~~G~~YFic~~~ 124 (188)
..++++||+|.|++.+ |++..++ ...|+.|.....+. ....|. . .|++ ++|+|||+|+.+
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 4688999999999963 9999984 56788887654432 223444 2 4578 999999999999
Q ss_pred CCCCCCCeEEEEEe
Q 039052 125 DHCKNGQRLLVEVM 138 (188)
Q Consensus 125 ~HC~~GmKl~I~V~ 138 (188)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.79 E-value=6.8e-09 Score=75.00 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=59.9
Q ss_pred EEEecC-CCCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEec---cCCCCCCCCCCcccccCCce-EE
Q 039052 38 DFKVGD-GFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDK---WGYYHCNSSNATVAFNNGKS-VF 109 (188)
Q Consensus 38 ~~~VGg-~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~---~~Y~~C~~s~p~~~~~~G~~-~v 109 (188)
+..+|+ +.++.+.| +..++++||+|.|.+.. |+|...+. ++++.+..+........|.+ .+
T Consensus 3 ~V~m~~~~~~~~F~P-----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP-----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR 71 (98)
T ss_dssp EEEESCTTSCCSEES-----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEecCCCCcEEeC-----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence 344554 45677765 34689999999999763 99876531 12222211111123455655 78
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 110 KLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 110 ~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+++++|.|+|+|.. ||..||+..|.|.
T Consensus 72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 89999999999996 9999999999884
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.76 E-value=5.6e-08 Score=74.41 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=63.0
Q ss_pred eeeEEEecC-CCCCCCCCCCCcccccccccCCeEecCceeEEEEe------CCeEEEEecc------------------C
Q 039052 35 AVKDFKVGD-GFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK------NDSVLEVDKW------------------G 89 (188)
Q Consensus 35 ~a~~~~VGg-~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~------~hsV~~V~~~------------------~ 89 (188)
+..++.||. ..++.+.| +..+++.||++.|++. .|++...... +
T Consensus 17 ~~~~V~v~~~~~~~~F~p-----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK-----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC-----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred cCEEEEEEecCCccEEcC-----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 345566743 23677764 3468999999998886 2777776422 5
Q ss_pred CCCCCCCCCc---ccccCCce---EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 90 YYHCNSSNAT---VAFNNGKS---VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 90 Y~~C~~s~p~---~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
|..|+..+.+ .....|.+ .|+++++|.|+|+|.+++||. ||+-.|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 6666533221 22455543 344558999999999999999 999999884
No 11
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.73 E-value=9.4e-09 Score=74.62 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=58.5
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccCCC-----CCCCCCCcccccCCce-
Q 039052 38 DFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWGYY-----HCNSSNATVAFNNGKS- 107 (188)
Q Consensus 38 ~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~-----~C~~s~p~~~~~~G~~- 107 (188)
+..+|.+ .++.+.| +..++++||++.|.+.. |++...+....+ .............|.+
T Consensus 5 ~V~~~~~~~~~~F~P-----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~ 73 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP-----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQST 73 (106)
T ss_dssp EEEESCTTCCSSEES-----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEE
T ss_pred EEEEEecCCcceEcC-----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEE
Confidence 4556643 5688765 34689999999999762 998865321110 0000000112344543
Q ss_pred EEEe---cCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 108 VFKL---DRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 108 ~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.+++ +++|.|+|.|. .||+.||+..|.|.
T Consensus 74 ~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 74 STTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 6788 89999999999 89999999999985
No 12
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.71 E-value=3e-08 Score=71.60 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccCCC----CCCC----CCCcccccCC
Q 039052 38 DFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWGYY----HCNS----SNATVAFNNG 105 (188)
Q Consensus 38 ~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~----~C~~----s~p~~~~~~G 105 (188)
+..+|++ .++.+.| +..++++||++.|.+.. |++...+.++++ .|+. .........|
T Consensus 2 ~V~~g~~~~~~~F~P-----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG 70 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYP-----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDE 70 (102)
T ss_dssp EEEESCTTCCCCEES-----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTB
T ss_pred EEEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCC
Confidence 3556663 4566654 24689999999999763 998865433321 1110 0011123455
Q ss_pred ce-EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 106 KS-VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 106 ~~-~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.+ .++++++|.|+|+|. .||..||+..|.|.
T Consensus 71 ~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 71 PSFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CEEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 43 688899999999999 89999999999984
No 13
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.69 E-value=3.3e-08 Score=75.47 Aligned_cols=81 Identities=26% Similarity=0.267 Sum_probs=56.8
Q ss_pred cCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCc-ccccCCce-EEEecCcccE
Q 039052 42 GDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNAT-VAFNNGKS-VFKLDRPGPF 117 (188)
Q Consensus 42 Gg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~-~~~~~G~~-~v~L~~~G~~ 117 (188)
|++.++.+.| +..++++||+|.|.+.+ |+|+... .|...+.. .....|.+ .++++++|.|
T Consensus 11 g~~g~~~F~P-----------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1pmy_A 11 GPGGMMVFDP-----------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVY 74 (123)
T ss_dssp ETTEEEEEES-----------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEE
T ss_pred cCCCCceEeC-----------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEE
Confidence 5444566665 24689999999999873 9998652 12211111 01123443 7899999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEecC
Q 039052 118 YFISGTPDHCKNGQRLLVEVMGL 140 (188)
Q Consensus 118 YFic~~~~HC~~GmKl~I~V~~~ 140 (188)
+|+|. .||..||+..|+|...
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 75 GFKCA--PHYMMGMVALVVVGDK 95 (123)
T ss_dssp EEECS--TTTTTTCEEEEEESSC
T ss_pred EEEeC--CccccCCEEEEEEcCC
Confidence 99998 4999999999999754
No 14
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.68 E-value=2e-08 Score=71.92 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=59.1
Q ss_pred EEEecC-CCCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEec---cCCCCCCCCCCcccccCCce-EE
Q 039052 38 DFKVGD-GFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDK---WGYYHCNSSNATVAFNNGKS-VF 109 (188)
Q Consensus 38 ~~~VGg-~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~---~~Y~~C~~s~p~~~~~~G~~-~v 109 (188)
+..+|+ +.++.+.| +..++++||++.|++.. |++...+. ++++.+...........|.+ .+
T Consensus 3 ~V~m~~~~~~~~F~P-----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~ 71 (98)
T 2plt_A 3 TVKLGADSGALEFVP-----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSV 71 (98)
T ss_dssp EEEESCTTCCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEecCCCCceEeC-----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEE
Confidence 455664 34577765 24689999999998763 88876532 12221111111123455654 68
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 110 KLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 110 ~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+++++|+|.|.|. .||+.||+-.|.|.
T Consensus 72 tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 72 KLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp ECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 8999999999999 79999999999884
No 15
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.66 E-value=4.5e-08 Score=74.72 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=56.5
Q ss_pred cCCCCCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCc-ccccCCce-EEEecCcccE
Q 039052 42 GDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNAT-VAFNNGKS-VFKLDRPGPF 117 (188)
Q Consensus 42 Gg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~-~~~~~G~~-~v~L~~~G~~ 117 (188)
|++.++.+.| +..++++||+|.|.+.+ |+|.... .|...+.. .....|.+ .++++++|.|
T Consensus 11 g~~g~~~F~P-----------~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1paz_A 11 GAEGAMVFEP-----------AYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAY 74 (123)
T ss_dssp ETTEEEEEES-----------SEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEE
T ss_pred cCCCCceEeC-----------CEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEE
Confidence 5544566664 34689999999999974 9998631 12211111 01123433 7899999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEecC
Q 039052 118 YFISGTPDHCKNGQRLLVEVMGL 140 (188)
Q Consensus 118 YFic~~~~HC~~GmKl~I~V~~~ 140 (188)
+|+|. .||..||+..|+|...
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~~ 95 (123)
T 1paz_A 75 LVKCT--PHYAMGMIALIAVGDS 95 (123)
T ss_dssp EEECT--TTGGGTCEEEEEESSS
T ss_pred EEEeC--CcccCCCEEEEEEcCC
Confidence 99998 4999999999999753
No 16
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.61 E-value=1e-07 Score=68.45 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=58.5
Q ss_pred EEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEecc---CCCCCCCC--CCcccccCCce-E
Q 039052 39 FKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKW---GYYHCNSS--NATVAFNNGKS-V 108 (188)
Q Consensus 39 ~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~---~Y~~C~~s--~p~~~~~~G~~-~ 108 (188)
..+|++ .++.+.| +..++++||+|.|++.. |+|...+.. +.+.+... ........|.+ .
T Consensus 3 v~m~~~~~~~~F~P-----------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1plc_A 3 VLLGADDGSLAFVP-----------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE 71 (99)
T ss_dssp EEESCTTCCSCEES-----------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred EEEecCCCcceEeC-----------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence 456653 4577654 34689999999998762 998775321 11211100 01112345554 7
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 109 FKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 109 v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 89999999999999 79999999999984
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.61 E-value=1e-07 Score=68.09 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=57.5
Q ss_pred EEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccC---CCCCCCCCCcccccCCc-eEEE
Q 039052 39 FKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWG---YYHCNSSNATVAFNNGK-SVFK 110 (188)
Q Consensus 39 ~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~---Y~~C~~s~p~~~~~~G~-~~v~ 110 (188)
..+|++ .++.+.| +..++++||++.|.+.. |++...+... .+.+.... .....|. ..++
T Consensus 5 V~~~~~~~~~~F~P-----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~t 71 (97)
T 1b3i_A 5 IKMGTDKYAPLYEP-----------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVT 71 (97)
T ss_dssp EEEEETTTEEEEES-----------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEE
T ss_pred EEEeccCCccEEeC-----------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEE
Confidence 445543 4566654 24689999999999763 9988764321 00011111 1234444 4788
Q ss_pred ecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 111 LDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 111 L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++++|.|+|+|. .||..||+..|.|.
T Consensus 72 f~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 72 LGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999999 89999999999884
No 18
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.58 E-value=1.5e-07 Score=67.45 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=58.3
Q ss_pred EEecC-CCCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEec---cCCCCCCCC--CCcccccCCce-E
Q 039052 39 FKVGD-GFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDK---WGYYHCNSS--NATVAFNNGKS-V 108 (188)
Q Consensus 39 ~~VGg-~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~---~~Y~~C~~s--~p~~~~~~G~~-~ 108 (188)
..+|+ +.+..+.| +..++++||+|.|++.. |++...+. ++++.+... ........|.+ .
T Consensus 3 V~~~~~~~~~~F~P-----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1byp_A 3 VLLGSSDGGLAFVP-----------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYS 71 (99)
T ss_dssp EEESCTTSCCSEES-----------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEE
T ss_pred EEEecCCCcceEeC-----------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEE
Confidence 45654 44577764 24689999999998763 99876532 112222110 00012345544 7
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 109 FKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 109 v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++++++|.|.|+|. .||+.||+..|.|.
T Consensus 72 ~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 72 VTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 88999999999999 79999999999884
No 19
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.56 E-value=5.9e-08 Score=74.25 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=51.2
Q ss_pred cCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcccc--cCCc-eEEEecCcccEEEEeCCCCCCCCCCeEEEEE
Q 039052 63 TRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATVAF--NNGK-SVFKLDRPGPFYFISGTPDHCKNGQRLLVEV 137 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~~~--~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V 137 (188)
+..++++||++.|.+.+ |+|...+. +...+. ..+ ..|. -.++++++|.|+|+|. .||..||+-.|.|
T Consensus 21 ~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V 92 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQV 92 (123)
T ss_dssp SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEE
Confidence 35689999999999985 99986421 111111 112 2333 3789999999999999 6999999999999
Q ss_pred ec
Q 039052 138 MG 139 (188)
Q Consensus 138 ~~ 139 (188)
..
T Consensus 93 ~~ 94 (123)
T 3erx_A 93 GD 94 (123)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 20
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.56 E-value=6.2e-08 Score=74.56 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=58.0
Q ss_pred ecCCC-CCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCc-ccccCCc-eEEEecCcc
Q 039052 41 VGDGF-GWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNAT-VAFNNGK-SVFKLDRPG 115 (188)
Q Consensus 41 VGg~~-GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~-~~~~~G~-~~v~L~~~G 115 (188)
+|.+. +..+.| +..++++||+|.|.+.+ |+|...+. +...... .....|. -.++++++|
T Consensus 11 ~g~~g~~~~F~P-----------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG 74 (127)
T 3tu6_A 11 KAADGRVMAFEP-----------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPG 74 (127)
T ss_dssp ECTTSCEEEEES-----------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCE
T ss_pred cCCCCcccEEeC-----------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCe
Confidence 45544 466665 35689999999999984 99986532 1111111 0112343 378999999
Q ss_pred cEEEEeCCCCCCCCCCeEEEEEecCC
Q 039052 116 PFYFISGTPDHCKNGQRLLVEVMGLH 141 (188)
Q Consensus 116 ~~YFic~~~~HC~~GmKl~I~V~~~~ 141 (188)
.|+|+|. .||..||+-.|.|....
T Consensus 75 ~y~y~C~--~H~~~GM~G~I~V~~~~ 98 (127)
T 3tu6_A 75 VYMYQCA--PHVGMGMIGAIVVGEPA 98 (127)
T ss_dssp EEEEECT--TTGGGTCEEEEEESSCT
T ss_pred EEEEEeC--CCCcCCcEEEEEECcCC
Confidence 9999999 59999999999998653
No 21
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.51 E-value=8.7e-08 Score=68.62 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=57.4
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccC--CCCCCCCCCcccccCCce-EEE
Q 039052 38 DFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWG--YYHCNSSNATVAFNNGKS-VFK 110 (188)
Q Consensus 38 ~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~--Y~~C~~s~p~~~~~~G~~-~v~ 110 (188)
+..+|.+ .++.+.| +..++++||++.|.+.. |++...+... -+..+..........|.+ .++
T Consensus 4 ~V~~~~~~~~~~F~P-----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t 72 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP-----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST 72 (98)
T ss_dssp EEEESCTTSCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence 3455543 5677765 24689999999999763 8887643210 000000000112345544 688
Q ss_pred ecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 111 LDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 111 L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
++++|.|+|.|. .||..||+-.|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 899999999999 79999999999984
No 22
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.46 E-value=2.8e-07 Score=70.79 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=57.8
Q ss_pred ecCCC-CCCCCCCCCcccccccccCCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCc-ccccCCce-EEEecCcc
Q 039052 41 VGDGF-GWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNAT-VAFNNGKS-VFKLDRPG 115 (188)
Q Consensus 41 VGg~~-GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~-~~~~~G~~-~v~L~~~G 115 (188)
+|++. ++.+.| +..++++||++.|.+.. |+|...+. +...+.. .....|.+ .++++++|
T Consensus 10 ~g~~G~~~~F~P-----------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G 73 (124)
T 3ef4_A 10 KDDAGNTMVFQP-----------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEG 73 (124)
T ss_dssp ECTTSCEEEEES-----------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSE
T ss_pred cCCCCceeEEeC-----------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCe
Confidence 44433 388876 35789999999999974 99987421 2111111 11234443 78999999
Q ss_pred cEEEEeCCCCCCCCCCeEEEEEec
Q 039052 116 PFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 116 ~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
.|.|+|. .||..||+-.|.|..
T Consensus 74 ~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 74 LYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEEcC--CCCcCCCEEEEEECC
Confidence 9999998 699999999999976
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.14 E-value=4.6e-06 Score=63.83 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=46.0
Q ss_pred CCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCCce-EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 64 RNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNGKS-VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G~~-~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..++++||++.|.... |+|...+..+- .=... ......|.+ .++++++|.|.|.|.. |. ||+-.|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~--s~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFR--GEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEE--CCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCC-ccccc--ccccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 4689999999998652 88876532210 00000 012344544 6888999999999997 76 999999884
No 24
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.03 E-value=6.7e-06 Score=59.33 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCeEecCceeEEEEeC-----CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCCCeEEE
Q 039052 64 RNRFHVGDSLSFEYKN-----DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNGQRLLV 135 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-----hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~GmKl~I 135 (188)
..++++||++.|.+.+ |++.. .++. .......|.. .++.+++|.|.|.|. .||..||+-.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~---~~~~------~~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTI---KKLG------IDVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEE---GGGT------EEEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEE---ecCC------cceeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 5789999999998863 44432 1111 1122344443 466789999999997 59999999999
Q ss_pred EEe
Q 039052 136 EVM 138 (188)
Q Consensus 136 ~V~ 138 (188)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 25
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.88 E-value=6.5e-05 Score=53.71 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=56.1
Q ss_pred EEEecCC-CCCCCCCCCCcccccccccCCeEecCceeEEEEeC---CeEEEEeccCCCCCCC-------CCCcccccCCc
Q 039052 38 DFKVGDG-FGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNS-------SNATVAFNNGK 106 (188)
Q Consensus 38 ~~~VGg~-~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~-------s~p~~~~~~G~ 106 (188)
+..+|.+ .+..+.| ...+++.||+|.|.... |++..-... ..+.. .........|.
T Consensus 4 ~V~~~~~~~~~~f~p-----------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~--~~~~~g~~~~~~~~~~~~i~pG~ 70 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP-----------ANVTVHPGDTVKWVNNKLPPHNILFDDKQ--VPGASKELADKLSHSQLMFSPGE 70 (105)
T ss_dssp EEEESCTTCCSCEES-----------SEEEECTTEEEEEEECSSCCEEEEECTTS--SGGGCHHHHHHHCEEEEECSTTC
T ss_pred EEEEeecCCccEEeC-----------CEEEEcCCCEEEEEECCCCCCeEEEeCCC--CCcccccccccccccccccCCCC
Confidence 3556643 5677764 23588999999998652 887654211 11100 00011234554
Q ss_pred e-EEEe---cCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 107 S-VFKL---DRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 107 ~-~v~L---~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
+ .+++ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 4 6777 79999999999 79999999999985
No 26
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.79 E-value=9.7e-05 Score=59.31 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred eEEEecCCCCCCCCCCCCcccccccccCCeE-ecCceeEEEEeC----------CeEEEEeccC---------------C
Q 039052 37 KDFKVGDGFGWQEPGHNNTAMYSQWATRNRF-HVGDSLSFEYKN----------DSVLEVDKWG---------------Y 90 (188)
Q Consensus 37 ~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F-~VGDtLvF~y~~----------hsV~~V~~~~---------------Y 90 (188)
.++.|+..+++.|.| +..++ +.||++.|.+.| |+++..+..+ |
T Consensus 43 ~~V~I~~~d~m~F~P-----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 43 CAATVESNDNMQFNT-----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CEEEEEECTTSCBSC-----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred eEEEEEeCCCceEec-----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 457777666888875 23466 779987776652 7777665432 2
Q ss_pred CCCCCCCCc---ccccCCce-EEEec----CcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 91 YHCNSSNAT---VAFNNGKS-VFKLD----RPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 91 ~~C~~s~p~---~~~~~G~~-~v~L~----~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..=+..+-+ .....|.+ .++++ ++|.|+|+|.+++|=+ |||-.|.|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 110111111 12455654 56665 7999999999999988 999999985
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.72 E-value=0.00032 Score=53.70 Aligned_cols=88 Identities=8% Similarity=0.129 Sum_probs=56.3
Q ss_pred EEecCCCCCCCCCCCCcccccccccCCeEecC-ceeEEEEe---C-------CeEEEEecc----------------CCC
Q 039052 39 FKVGDGFGWQEPGHNNTAMYSQWATRNRFHVG-DSLSFEYK---N-------DSVLEVDKW----------------GYY 91 (188)
Q Consensus 39 ~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VG-DtLvF~y~---~-------hsV~~V~~~----------------~Y~ 91 (188)
..|+..++..+.| +..+++.| |.+.|.+. + |+++..+.. +|.
T Consensus 5 v~i~~~d~m~F~p-----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v 73 (129)
T 1cuo_A 5 TTVTSGDTMTYST-----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV 73 (129)
T ss_dssp EEEEECSSSCCSC-----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred EEEEeCCCceEcc-----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence 4455555678775 34688999 97666664 2 887776543 221
Q ss_pred CCCCCCCc---ccccCCce-EEEe--c---CcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 92 HCNSSNAT---VAFNNGKS-VFKL--D---RPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 92 ~C~~s~p~---~~~~~G~~-~v~L--~---~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.=+..+-+ .....|.+ .+++ + ++|.|+|+|+.++|=. |||-.|.|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 10111111 23456654 3444 3 8999999999999999 899999985
No 28
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.69 E-value=4.8e-05 Score=57.59 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=47.6
Q ss_pred CCeEecCceeEEEEeC--CeEEEEeccCCCCCCCCCCcc-cccCCc-eEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 039052 64 RNRFHVGDSLSFEYKN--DSVLEVDKWGYYHCNSSNATV-AFNNGK-SVFKLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~p~~-~~~~G~-~~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
..++++||+|.|.... |+|...+ + +-...... ....|. ..++++++|.|.|+|.. |+. |+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~--~---~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIK--G---MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECT--T---CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEcc--c---ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 4688999999999873 9987653 1 11111110 112333 37889999999999997 887 999999975
Q ss_pred C
Q 039052 140 L 140 (188)
Q Consensus 140 ~ 140 (188)
.
T Consensus 93 ~ 93 (122)
T 2ux6_A 93 A 93 (122)
T ss_dssp S
T ss_pred C
Confidence 3
No 29
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.61 E-value=0.00012 Score=53.50 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=45.8
Q ss_pred CCeEecCceeEEEEeC---CeEEEEeccCCCCCCCCCCcccccCCce-EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 64 RNRFHVGDSLSFEYKN---DSVLEVDKWGYYHCNSSNATVAFNNGKS-VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~p~~~~~~G~~-~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..++++||+|.|.... |+|...+... ..=... ......|.+ .++++++|.|.|.|.. |. ||+-.|.|.
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~--s~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFR--GEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEE--CCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCC-Cccccc--ccccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 4689999999998652 8886543210 000000 012344544 6888999999999997 76 999999883
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.58 E-value=9.8e-05 Score=53.73 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=53.2
Q ss_pred eeEEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEEEe-C--CeEEEEeccC----CCCCCCCCCcccccCCce-
Q 039052 36 VKDFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFEYK-N--DSVLEVDKWG----YYHCNSSNATVAFNNGKS- 107 (188)
Q Consensus 36 a~~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~y~-~--hsV~~V~~~~----Y~~C~~s~p~~~~~~G~~- 107 (188)
++++.|.- .+|.+.| ...++++||+|.|... . |+|...+..+ ++. .....|.+
T Consensus 18 a~~~~V~~-~~~~F~P-----------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~-------~~~~pG~~~ 78 (105)
T 2ov0_A 18 DGAIVVDI-AKMKYET-----------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAY 78 (105)
T ss_dssp TTCEEEEE-ETTEESS-----------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEE
T ss_pred CcCEEEEE-eecEEcC-----------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCcccccc-------cccCCCCEE
Confidence 44555533 3577764 2468999999999865 2 8887542111 111 11334543
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.++++++|.|+|.|.. |- ||+-.|.|.
T Consensus 79 ~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 79 SLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 6788999999999997 54 999999883
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.39 E-value=0.0011 Score=50.64 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=54.2
Q ss_pred EEecCCCCCCCCCCCCcccccccccCCeE-ecCceeEEEEe--C--------CeEEEEecc----------------CCC
Q 039052 39 FKVGDGFGWQEPGHNNTAMYSQWATRNRF-HVGDSLSFEYK--N--------DSVLEVDKW----------------GYY 91 (188)
Q Consensus 39 ~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F-~VGDtLvF~y~--~--------hsV~~V~~~----------------~Y~ 91 (188)
..|+..+++.+.| +..++ +.||++.|.+. . |+++..+.+ +|.
T Consensus 4 v~v~~~d~m~F~p-----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~ 72 (128)
T 2iaa_C 4 VSIEGNDSMQFNT-----------KSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV 72 (128)
T ss_dssp EEEEECTTSCBSC-----------SEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEeCCCceEec-----------CEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence 4455556788865 12344 55997666664 1 888776533 232
Q ss_pred CCCCCCCc---ccccCCce-EEEec----Ccc-cEEEEeCCCCCCCCCCeEEEEEe
Q 039052 92 HCNSSNAT---VAFNNGKS-VFKLD----RPG-PFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 92 ~C~~s~p~---~~~~~G~~-~v~L~----~~G-~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.=+..+-+ .....|.+ .++++ ++| .|.|+|++++|=. |||-.|.|.
T Consensus 73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 11111111 12456654 45554 678 5999999999999 999999985
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.28 E-value=0.0013 Score=50.25 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.3
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCeE-ecCceeEEEEeC----------CeEEEEeccC----------------C
Q 039052 38 DFKVGDGFGWQEPGHNNTAMYSQWATRNRF-HVGDSLSFEYKN----------DSVLEVDKWG----------------Y 90 (188)
Q Consensus 38 ~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F-~VGDtLvF~y~~----------hsV~~V~~~~----------------Y 90 (188)
++.|+..+++.+.| +..++ +.||++.|.+.| |+++..+..+ |
T Consensus 4 ~v~v~~~d~m~F~p-----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT-----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQY 72 (128)
T ss_dssp EEEEEECTTSCBSC-----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTT
T ss_pred EEEEEeCCCccEec-----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccc
Confidence 35566556788875 23466 779987766641 8877764332 2
Q ss_pred CCCCCCCCc---ccccCCce-EEEec----Cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 039052 91 YHCNSSNAT---VAFNNGKS-VFKLD----RPGP-FYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 91 ~~C~~s~p~---~~~~~G~~-~v~L~----~~G~-~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..=+..+-+ .....|.+ .++++ ++|. |.|+|++++|=. |||-.|.|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 110111111 13456654 45554 5676 999999999999 999999883
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.26 E-value=0.0014 Score=50.15 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=53.6
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCeE-ecCceeEEEEeC----------CeEEEEecc----------------CC
Q 039052 38 DFKVGDGFGWQEPGHNNTAMYSQWATRNRF-HVGDSLSFEYKN----------DSVLEVDKW----------------GY 90 (188)
Q Consensus 38 ~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F-~VGDtLvF~y~~----------hsV~~V~~~----------------~Y 90 (188)
++.|+..++..+.| +..++ +.||++.|.+.| |+++..+.. +|
T Consensus 4 ~v~v~~~d~m~F~p-----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~ 72 (129)
T 2ccw_A 4 EATVESNDAMQYNV-----------KEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY 72 (129)
T ss_dssp EEEEEECTTSCBSC-----------SEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCCccEec-----------ceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccc
Confidence 34555556778764 12344 559976666641 887776543 23
Q ss_pred CCCCCCCCc---ccccCCce-EEEe--c--Cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 039052 91 YHCNSSNAT---VAFNNGKS-VFKL--D--RPGP-FYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 91 ~~C~~s~p~---~~~~~G~~-~v~L--~--~~G~-~YFic~~~~HC~~GmKl~I~V~ 138 (188)
..=+..+-+ .....|.+ .+++ + ++|. |.|+|+.++|=+ |||-.|.|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 211111111 12455654 4554 3 5665 999999999988 999999985
No 34
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.20 E-value=0.00026 Score=57.57 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=49.4
Q ss_pred CeEecCceeEEE---Ee---------CCeEEEEeccCCCCCCCCCCc-ccc------c-CCceEEE--------------
Q 039052 65 NRFHVGDSLSFE---YK---------NDSVLEVDKWGYYHCNSSNAT-VAF------N-NGKSVFK-------------- 110 (188)
Q Consensus 65 ~~F~VGDtLvF~---y~---------~hsV~~V~~~~Y~~C~~s~p~-~~~------~-~G~~~v~-------------- 110 (188)
...++||.|.+- |+ ...+++|++++|++|+..... ..+ . .|+.+|+
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 467899999775 32 135889999999999875432 111 1 1333332
Q ss_pred ecCcc-cEEEEeCC-----CCCCCCCCeEEEEEecCCCC
Q 039052 111 LDRPG-PFYFISGT-----PDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 111 L~~~G-~~YFic~~-----~~HC~~GmKl~I~V~~~~~~ 143 (188)
+. +| .||||++- ++-| |||+|.|...+..
T Consensus 132 F~-pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~~ 166 (177)
T 2x11_B 132 FR-PGREYFYISSAIPDNGRRSC---LKLKVFVRPTNSC 166 (177)
T ss_dssp CC-TTEEEEEEEEESSCCCSSSC---CEEEEEECCTTTC
T ss_pred cc-CCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCCC
Confidence 22 55 88999852 2346 9999999987654
No 35
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.16 E-value=7.4e-05 Score=60.80 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=50.3
Q ss_pred EecCceeEEE---Ee--------CCeEEEEeccCCCCCCCCC-Ccccc--c--CCceEEEec-------------Ccc-c
Q 039052 67 FHVGDSLSFE---YK--------NDSVLEVDKWGYYHCNSSN-ATVAF--N--NGKSVFKLD-------------RPG-P 116 (188)
Q Consensus 67 F~VGDtLvF~---y~--------~hsV~~V~~~~Y~~C~~s~-p~~~~--~--~G~~~v~L~-------------~~G-~ 116 (188)
.++||.|.+- |+ .+.+++|++++|+.|+... +...+ + .+...+++. ++| .
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 3569999876 32 2579999999999998863 22111 1 222333331 355 9
Q ss_pred EEEEeCC-----------CCCCCC-CCeEEEEEecCCC
Q 039052 117 FYFISGT-----------PDHCKN-GQRLLVEVMGLHP 142 (188)
Q Consensus 117 ~YFic~~-----------~~HC~~-GmKl~I~V~~~~~ 142 (188)
|||||.- +|+|.. +|||.|.|.....
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 9999975 378985 8999999965443
No 36
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.99 E-value=0.00031 Score=55.06 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=47.3
Q ss_pred EecCceeEEEEe-----------CCeEEEEeccCCCCCCCCC-Cccccc----CCceEEEec-------------Ccc-c
Q 039052 67 FHVGDSLSFEYK-----------NDSVLEVDKWGYYHCNSSN-ATVAFN----NGKSVFKLD-------------RPG-P 116 (188)
Q Consensus 67 F~VGDtLvF~y~-----------~hsV~~V~~~~Y~~C~~s~-p~~~~~----~G~~~v~L~-------------~~G-~ 116 (188)
.++||.|.+-=. ...+++|++++|+.|+... +...+. .+...+++. ++| .
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 357999987632 1468899999999998863 221111 222222221 345 8
Q ss_pred EEEEeCC-----------CCCCCC-CCeEEEEEec
Q 039052 117 FYFISGT-----------PDHCKN-GQRLLVEVMG 139 (188)
Q Consensus 117 ~YFic~~-----------~~HC~~-GmKl~I~V~~ 139 (188)
||||+.- +|-|.. .|||.|.|..
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 8889863 357884 7999999863
No 37
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.89 E-value=0.0028 Score=46.06 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=43.5
Q ss_pred CCeEecCceeEEEEeC-----CeEEEEeccCCCCCCCCCCcccccCCce-EEEe--cCcccEEEEeCCCCCCCC-CCeEE
Q 039052 64 RNRFHVGDSLSFEYKN-----DSVLEVDKWGYYHCNSSNATVAFNNGKS-VFKL--DRPGPFYFISGTPDHCKN-GQRLL 134 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-----hsV~~V~~~~Y~~C~~s~p~~~~~~G~~-~v~L--~~~G~~YFic~~~~HC~~-GmKl~ 134 (188)
..+++.||.+.|.+.+ |++.. . ++. .......|.+ .+++ +++|.|+|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i-~--~~~------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSI-D--AFG------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEE-G--GGT------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEE-c--CCC------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 4688999999998874 55432 1 111 1223455554 4444 899999999997 7753 39999
Q ss_pred EEEe
Q 039052 135 VEVM 138 (188)
Q Consensus 135 I~V~ 138 (188)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 38
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.73 E-value=0.0015 Score=53.33 Aligned_cols=75 Identities=24% Similarity=0.445 Sum_probs=47.2
Q ss_pred CeEecCceeEEE---EeC----------CeEEEEeccCCCCCCCCC-Ccccc------c-CCceE--------------E
Q 039052 65 NRFHVGDSLSFE---YKN----------DSVLEVDKWGYYHCNSSN-ATVAF------N-NGKSV--------------F 109 (188)
Q Consensus 65 ~~F~VGDtLvF~---y~~----------hsV~~V~~~~Y~~C~~s~-p~~~~------~-~G~~~--------------v 109 (188)
...++||.|.+- |+. ..+++|++++|++|+... +...+ . .|+.+ +
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 467899999775 321 357899999999998764 22111 1 12222 2
Q ss_pred EecCcc-cEEEEeC----CCCCCCCCCeEEEEEecCCCC
Q 039052 110 KLDRPG-PFYFISG----TPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 110 ~L~~~G-~~YFic~----~~~HC~~GmKl~I~V~~~~~~ 143 (188)
++ ++| .||||+. .+|.| |||.|.|......
T Consensus 130 EF-~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~ 164 (182)
T 3czu_B 130 EF-KEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITH 164 (182)
T ss_dssp CC-CTTCEEEEEEEESSSCCCSC---CEEEEEECC----
T ss_pred eE-eCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCC
Confidence 23 255 8899986 35667 8999999866544
No 39
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.51 E-value=0.0024 Score=49.90 Aligned_cols=74 Identities=24% Similarity=0.440 Sum_probs=48.5
Q ss_pred CeEecCceeEEE---Ee---------CCeEEEEeccCCCCCCCCCCc-cccc-------CCceEEE--------------
Q 039052 65 NRFHVGDSLSFE---YK---------NDSVLEVDKWGYYHCNSSNAT-VAFN-------NGKSVFK-------------- 110 (188)
Q Consensus 65 ~~F~VGDtLvF~---y~---------~hsV~~V~~~~Y~~C~~s~p~-~~~~-------~G~~~v~-------------- 110 (188)
...++||.|.+- |+ ...+++|++++|++|+..... ..+. .|+.+|+
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 467889999775 32 135889999999999875432 1221 1333332
Q ss_pred ecCcc-cEEEEeCC-----CCCCCCCCeEEEEEecCCC
Q 039052 111 LDRPG-PFYFISGT-----PDHCKNGQRLLVEVMGLHP 142 (188)
Q Consensus 111 L~~~G-~~YFic~~-----~~HC~~GmKl~I~V~~~~~ 142 (188)
+. +| .||||++- ++-| |||.|.|.+.+.
T Consensus 103 F~-pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~~ 136 (138)
T 1shx_A 103 FR-PGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 136 (138)
T ss_dssp CC-TTEEEEEEEEESSCCSCSCC---CEEEEEECCTTT
T ss_pred ec-CCCeEEEEEcCCCCCCCCce---eEEEEEEEcccC
Confidence 22 55 88999752 3456 999999987653
No 40
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.45 E-value=0.0016 Score=51.13 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred eEecCceeEEEEe--------------CCeEEEEeccCCCCCCCC-CCccc------------------ccCCceEEEec
Q 039052 66 RFHVGDSLSFEYK--------------NDSVLEVDKWGYYHCNSS-NATVA------------------FNNGKSVFKLD 112 (188)
Q Consensus 66 ~F~VGDtLvF~y~--------------~hsV~~V~~~~Y~~C~~s-~p~~~------------------~~~G~~~v~L~ 112 (188)
..++||.|.+-=. ...+++|++++|++|+.. .+... ++.-+-.+++.
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 5678899977532 135899999999999886 23221 22222233443
Q ss_pred CcccEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 039052 113 RPGPFYFISGT-----------PDHCKN-GQRLLVEVM 138 (188)
Q Consensus 113 ~~G~~YFic~~-----------~~HC~~-GmKl~I~V~ 138 (188)
.-..||||+.- +|-|.. +|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 33489999963 467885 899999985
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.36 E-value=0.02 Score=43.86 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=44.6
Q ss_pred CCeEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCc---eEEEecCcccEEEEeCCCCCCC---CCCeE
Q 039052 64 RNRFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGK---SVFKLDRPGPFYFISGTPDHCK---NGQRL 133 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~---~~v~L~~~G~~YFic~~~~HC~---~GmKl 133 (188)
.-++.+||.+.|..++ |+...- ++. -......|. -.++++++|.|+|.|.. +|- .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip---~~~------~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEET---TSS------CEEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEec---CCC------ceeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence 5689999999999874 554431 111 011233453 36889999999999986 454 68999
Q ss_pred EEEEe
Q 039052 134 LVEVM 138 (188)
Q Consensus 134 ~I~V~ 138 (188)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.44 E-value=0.012 Score=46.96 Aligned_cols=74 Identities=26% Similarity=0.420 Sum_probs=47.0
Q ss_pred CeEecCceeEEE---EeC----------CeEEEEeccCCCCCCCCCCc-ccc------c-CCceE--------------E
Q 039052 65 NRFHVGDSLSFE---YKN----------DSVLEVDKWGYYHCNSSNAT-VAF------N-NGKSV--------------F 109 (188)
Q Consensus 65 ~~F~VGDtLvF~---y~~----------hsV~~V~~~~Y~~C~~s~p~-~~~------~-~G~~~--------------v 109 (188)
...++||.|.+- |+. -.+++|++++|++|+..... ..+ . .|+.+ +
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 467899999876 321 23889999999999886532 111 1 12222 2
Q ss_pred EecCcc-cEEEEeCC-----CCCCCCCCeEEEEEecCCC
Q 039052 110 KLDRPG-PFYFISGT-----PDHCKNGQRLLVEVMGLHP 142 (188)
Q Consensus 110 ~L~~~G-~~YFic~~-----~~HC~~GmKl~I~V~~~~~ 142 (188)
++. +| .||||+.- ++-| |||.|.|.....
T Consensus 112 EF~-pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~~ 146 (157)
T 2wo3_B 112 EFR-PGHEYYYISATPPNAVDRPC---LRLKVYVRPTQE 146 (157)
T ss_dssp CCC-TTCEEEEEEECTTCSCCTTC---CEEEEEECCCC-
T ss_pred eee-CCCeEEEEEecCCCCCCCcc---eeEEEEEEcCCC
Confidence 232 45 89999963 4556 588888876654
No 43
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.07 E-value=0.091 Score=41.93 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=43.8
Q ss_pred cCCeEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCc---eEEEecCcccEEEEeCCCCCCCC---CCe
Q 039052 63 TRNRFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGK---SVFKLDRPGPFYFISGTPDHCKN---GQR 132 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~---GmK 132 (188)
+.-.+.+|+.+.|..++ |+...- ++. -......|. ..++.+++|.||+.|.. .|.. +|+
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP---~lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M~ 161 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 161 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEET---TSS------CEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGCE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEEC---CCC------eEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCCE
Confidence 44578889999998874 554431 111 111223454 36788999999999996 5554 599
Q ss_pred EEEEEe
Q 039052 133 LLVEVM 138 (188)
Q Consensus 133 l~I~V~ 138 (188)
..|.|.
T Consensus 162 g~V~V~ 167 (168)
T 3s8f_B 162 GTIVVK 167 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999986
No 44
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=93.70 E-value=0.99 Score=34.32 Aligned_cols=85 Identities=8% Similarity=0.103 Sum_probs=49.2
Q ss_pred EEecCCCCCCCCCCCCcccccccccCCeEec-CceeEEEEeC----------CeEEEEecc----------------CCC
Q 039052 39 FKVGDGFGWQEPGHNNTAMYSQWATRNRFHV-GDSLSFEYKN----------DSVLEVDKW----------------GYY 91 (188)
Q Consensus 39 ~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~V-GDtLvF~y~~----------hsV~~V~~~----------------~Y~ 91 (188)
..|-..++..|.| +..++.. |+++.|.+.+ |+++..+.+ +|-
T Consensus 5 v~i~~~d~M~F~p-----------~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~ 73 (125)
T 3fsa_A 5 VDIQGNDQMQFNT-----------NAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYL 73 (125)
T ss_dssp EEEEBCTTSCBSC-----------SEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEccCCcEEec-----------CEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccC
Confidence 3444455677764 1234433 9998777762 888876422 232
Q ss_pred CCCCCCCc---ccccCCce-EEEec-----CcccEEEEeCCCCCCCCCCeEEEEEe
Q 039052 92 HCNSSNAT---VAFNNGKS-VFKLD-----RPGPFYFISGTPDHCKNGQRLLVEVM 138 (188)
Q Consensus 92 ~C~~s~p~---~~~~~G~~-~v~L~-----~~G~~YFic~~~~HC~~GmKl~I~V~ 138 (188)
.=+..+-+ .....|.+ .++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 74 ~~~d~~via~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 74 KPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp CTTCTTCCEECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CCCCccceeccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 11111111 23456654 45554 5699999999 786 999998873
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.91 E-value=0.24 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=44.5
Q ss_pred CCeEecCceeEEEEeC--------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCC---CCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN--------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGT---PDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~--------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~---~~HC~~ 129 (188)
..++++||++.|...+ |++..- .+ +.......|.+ .|+++++|.|||.|.. ..| .
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip---~~------gv~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~ 582 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMG---NY------GVAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--M 582 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEET---TT------TEEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--T
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEec---CC------CcceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--c
Confidence 3578899999999764 333321 11 11122345543 6788999999999984 345 4
Q ss_pred CCeEEEEEecC
Q 039052 130 GQRLLVEVMGL 140 (188)
Q Consensus 130 GmKl~I~V~~~ 140 (188)
||+..|.|.+.
T Consensus 583 gM~G~IiV~p~ 593 (595)
T 1fwx_A 583 EMRGRMLVEPK 593 (595)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEEEcC
Confidence 99999999864
No 46
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=92.78 E-value=0.14 Score=45.22 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred cCCeEecCceeEEEEeC-----CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCCCeEE
Q 039052 63 TRNRFHVGDSLSFEYKN-----DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNGQRLL 134 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~-----hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~GmKl~ 134 (188)
...+++.||++.|++.+ |++..-.......|- ...|.+ .|+++++|+++|.|...+|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 45689999999999874 554321111112222 233433 566688999999999988888899999
Q ss_pred EEEecCCC
Q 039052 135 VEVMGLHP 142 (188)
Q Consensus 135 I~V~~~~~ 142 (188)
|.|.....
T Consensus 128 i~V~~~~~ 135 (447)
T 2dv6_A 128 IQVLPGNR 135 (447)
T ss_dssp EEEESSCC
T ss_pred EEEeCCcc
Confidence 99987554
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.08 E-value=0.71 Score=43.82 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCeEecCceeEEEEeC--------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCC--
Q 039052 64 RNRFHVGDSLSFEYKN--------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNG-- 130 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~--------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~G-- 130 (188)
..++.+||.+.|..++ |+... ..+. -......|.+ .|+.+++|.|||.|+. .|-.+
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~I---PslG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs 627 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVV---VNHG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHM 627 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEE---TTTT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCT
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEe---cCCC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCcc
Confidence 4678899999998654 34332 1111 1112345543 5778999999999997 66654
Q ss_pred -CeEEEEEec
Q 039052 131 -QRLLVEVMG 139 (188)
Q Consensus 131 -mKl~I~V~~ 139 (188)
|+..|.|.+
T Consensus 628 ~M~G~ViVEP 637 (638)
T 3sbq_A 628 EMVGRMMVEP 637 (638)
T ss_dssp TCEEEEEEEC
T ss_pred cceEEEEEec
Confidence 999999975
No 48
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=84.57 E-value=0.38 Score=37.09 Aligned_cols=70 Identities=24% Similarity=0.480 Sum_probs=43.2
Q ss_pred CeEecCceeEEE---Ee----------CCeEEEEeccCCCCCCCCC-Ccccc------c-CCceEEE-------------
Q 039052 65 NRFHVGDSLSFE---YK----------NDSVLEVDKWGYYHCNSSN-ATVAF------N-NGKSVFK------------- 110 (188)
Q Consensus 65 ~~F~VGDtLvF~---y~----------~hsV~~V~~~~Y~~C~~s~-p~~~~------~-~G~~~v~------------- 110 (188)
...++||.|.+- |+ ...+++|++++|++|+... +...+ . .|+.+|+
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 467889999764 32 1357899999999999764 22222 1 2333332
Q ss_pred -ecCcc-cEEEEeCC----CCCCCCCCeEEEEEe
Q 039052 111 -LDRPG-PFYFISGT----PDHCKNGQRLLVEVM 138 (188)
Q Consensus 111 -L~~~G-~~YFic~~----~~HC~~GmKl~I~V~ 138 (188)
+. +| .||||+.- ++.| .||.|.|.
T Consensus 102 EF~-pG~~YY~ISt~~~~~~~~c---l~l~v~v~ 131 (132)
T 3hei_B 102 EFK-EGHSYYYISKPIHQHEDRC---LRLKVTVK 131 (132)
T ss_dssp CCC-TTCEEEEEEEESSCCCCSC---CEEEEEEC
T ss_pred eec-CCCcEEEEEccCCCCCCcc---eEEEEEEE
Confidence 22 55 78888862 2233 68888774
No 49
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=71.72 E-value=1.5 Score=31.39 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=18.8
Q ss_pred ccCCeEecCceeEEEEeCCeEEEE
Q 039052 62 ATRNRFHVGDSLSFEYKNDSVLEV 85 (188)
Q Consensus 62 A~~~~F~VGDtLvF~y~~hsV~~V 85 (188)
+..+..++||.|+|+|...+...|
T Consensus 73 v~~~~L~~GD~lvF~~~~~~~f~V 96 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRDRTFYV 96 (104)
T ss_dssp HHHHTCCTTCEEEEEECSSSEEEE
T ss_pred HHHcCCCCCCEEEEEEcCCCeEEE
Confidence 456688999999999997555555
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=68.66 E-value=7.8 Score=32.70 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=47.4
Q ss_pred CeEecCceeEEEEeC-------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCC-----CCCC
Q 039052 65 NRFHVGDSLSFEYKN-------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPD-----HCKN 129 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~-----HC~~ 129 (188)
.+++.||+|.+++.| |.+..-...+.+. .........|.+ .|+.+++|++||-|-..+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~---~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALG---GGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGG---GGGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCC---CCceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 478899999998874 4544321111110 011222455654 567789999999998764 6668
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
||.-.+.|....
T Consensus 143 Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 143 GMAGCIMVLPRD 154 (333)
T ss_dssp TCEEEEEEECTT
T ss_pred CCEEEEEEccCc
Confidence 999998887543
No 51
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=64.94 E-value=6.1 Score=32.35 Aligned_cols=63 Identities=14% Similarity=0.218 Sum_probs=41.0
Q ss_pred CeEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCCCCCCC---CeEE
Q 039052 65 NRFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCKNG---QRLL 134 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~G---mKl~ 134 (188)
-.+.+|+.+.|.-+. |+-..- .+ ... ..--.|.. .++.+++|.||..|+. -|..| |++.
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~IP---~l-----gvK-~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~ 111 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFFIP---RL-----GSQ-IYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKFK 111 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEEEG---GG-----TEE-EEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCEE
T ss_pred EEEeCCCEEEEEEecCCceeeEEec---cc-----CcE-EEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceEE
Confidence 467789998888875 433321 11 100 11123432 5678999999999996 77764 9999
Q ss_pred EEEe
Q 039052 135 VEVM 138 (188)
Q Consensus 135 I~V~ 138 (188)
|.|.
T Consensus 112 v~vv 115 (205)
T 1cyx_A 112 AIAT 115 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9888
No 52
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=63.88 E-value=6 Score=34.06 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=40.9
Q ss_pred eEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCc---eEEEecCcccEEEEeCCCCCCCCC---CeEEE
Q 039052 66 RFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGK---SVFKLDRPGPFYFISGTPDHCKNG---QRLLV 135 (188)
Q Consensus 66 ~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~G---mKl~I 135 (188)
.+.+|+.+.|.-+. |+-..- ++ . -...--.|. ..++.+++|.||..|++ -|..| |++.|
T Consensus 192 vlP~g~~V~~~ltS~DViHsf~iP---~l-----g-~k~daiPG~~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v 260 (298)
T 3hb3_B 192 VVPVGKKVLVQVTATDVIHAWTIP---AF-----A-VKQDAVPGRIAQLWFSVDQEGVYFGQCSE--LCGINHAYMPIVV 260 (298)
T ss_dssp EEESSSEEEEEEEESSSCEEEEEG---GG-----T-EEEEECTTCCEEEEEECSSSEEEEECCCS--CCSTTTTSCCEEE
T ss_pred EEEcCCEEEEEEEeCCccceeeEc---cc-----C-ceEEecCCceEEEEEEeCCCEEEEEEccc--ccCcCccCCeeEE
Confidence 55677888887774 433321 10 0 001112343 35788999999999996 67765 99999
Q ss_pred EEecCC
Q 039052 136 EVMGLH 141 (188)
Q Consensus 136 ~V~~~~ 141 (188)
.|.+..
T Consensus 261 ~vvs~~ 266 (298)
T 3hb3_B 261 KAVSQE 266 (298)
T ss_dssp EEECHH
T ss_pred EEEcHH
Confidence 987543
No 53
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=62.90 E-value=11 Score=31.63 Aligned_cols=74 Identities=23% Similarity=0.257 Sum_probs=46.6
Q ss_pred CeEecCceeEEEEeC-------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCC----CCCCC
Q 039052 65 NRFHVGDSLSFEYKN-------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPD----HCKNG 130 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~----HC~~G 130 (188)
.+++.||.|.+++.| |++..=..... +...+......|.+ .|+.+.+|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~---~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGA---LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG---GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCC---CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 478899999988864 44433111000 01112222455654 566789999999998743 44579
Q ss_pred CeEEEEEecCC
Q 039052 131 QRLLVEVMGLH 141 (188)
Q Consensus 131 mKl~I~V~~~~ 141 (188)
|.-.+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999998654
No 54
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=62.83 E-value=8.2 Score=32.56 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=30.1
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCCC
Q 039052 108 VFKLDRPGPFYFISGTPDHC-KNGQRLLVEVMGLHP 142 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC-~~GmKl~I~V~~~~~ 142 (188)
.++.+.+|.|+|.|....|+ ..||.-.+.|.....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 57788899999999998888 899999999986544
No 55
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=62.08 E-value=6.9 Score=32.89 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=40.2
Q ss_pred eEecCceeEEEEeC----CeEEEEeccCCCCCCCCCCcccccCCc---eEEEecCcccEEEEeCCCCCCCCC---CeEEE
Q 039052 66 RFHVGDSLSFEYKN----DSVLEVDKWGYYHCNSSNATVAFNNGK---SVFKLDRPGPFYFISGTPDHCKNG---QRLLV 135 (188)
Q Consensus 66 ~F~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~p~~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~G---mKl~I 135 (188)
.+.+|+.+.|.-+. |+-..- .+ . -...--.|. ..++.+++|.||..|+. -|..| |++.|
T Consensus 174 ~lP~g~~v~~~~tS~DViHsf~ip---~l-----~-~k~da~PG~~n~~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v 242 (262)
T 2gsm_B 174 VVPVNKTVVVQVTGADVIHSWTVP---AF-----G-VKQDAVPGRLAQLWFRAEREGIFFGQCSE--LCGISHAYMPITV 242 (262)
T ss_dssp EEETTSEEEEEEEESSSCEEEEEG---GG-----T-EEEEECBTCCEEEEEECCSCEEEEECCCS--CCSTTGGGCCEEE
T ss_pred EEecCCEEEEEEEECcccceeeec---cc-----C-ceEEecCCceeEEEEecCCcEEEEEEChH--hcccCcccCeEEE
Confidence 56778888787764 333221 10 0 001112333 26788999999999996 78876 99988
Q ss_pred EEec
Q 039052 136 EVMG 139 (188)
Q Consensus 136 ~V~~ 139 (188)
.|.+
T Consensus 243 ~vv~ 246 (262)
T 2gsm_B 243 KVVS 246 (262)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8875
No 56
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=60.20 E-value=6.5 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=25.3
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNG---QRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~G---mKl~I~V~~ 139 (188)
.++.+++|.||..|+. -|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5778999999999985 78876 898888875
No 57
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=53.81 E-value=7.7 Score=32.72 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=29.7
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCC
Q 039052 108 VFKLDRPGPFYFISGTPDHC-KNGQRLLVEVMGLH 141 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC-~~GmKl~I~V~~~~ 141 (188)
.++.+.+|.|+|.|-...|+ +.||.-.+.|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 56788999999999999999 99999999997643
No 58
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=51.65 E-value=14 Score=31.21 Aligned_cols=74 Identities=24% Similarity=0.262 Sum_probs=44.5
Q ss_pred CCeEecCceeEEEEeC-------CeEEEEeccCCCCCCCCCC-cccccCCce---EEEecCcccEEEEeCC---CCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN-------DSVLEVDKWGYYHCNSSNA-TVAFNNGKS---VFKLDRPGPFYFISGT---PDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-------hsV~~V~~~~Y~~C~~s~p-~~~~~~G~~---~v~L~~~G~~YFic~~---~~HC~~ 129 (188)
..+++.||++.+++.| |++.-=-....| ..+ ......|.+ .|+.+.+|++||-|.. ..|=..
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~d----G~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~ 146 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG----GGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG----GGTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCC----CCCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhc
Confidence 3578899999998864 222110000011 001 112345544 5667899999999975 234567
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
||.-.|.|....
T Consensus 147 Gl~G~~iV~~~~ 158 (327)
T 1kbv_A 147 GMYGLILVEPKE 158 (327)
T ss_dssp TCEEEEEEECTT
T ss_pred ceEEEEEEecCC
Confidence 999999998653
No 59
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=49.90 E-value=24 Score=30.10 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=28.2
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 039052 112 DRPGPFYFISGTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 112 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
+.+|.++|-|-+..|=..||...+.|......
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 57999999999999999999999999876554
No 60
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=49.25 E-value=24 Score=29.62 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=46.4
Q ss_pred CeEecCceeEEEEeC-------CeEEEEeccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCCC----CCCCC
Q 039052 65 NRFHVGDSLSFEYKN-------DSVLEVDKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTPD----HCKNG 130 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-------hsV~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~----HC~~G 130 (188)
.+++.||.+.+++.| |.+..-..... +...+......|.+ .|+++.+|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~---~~~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGA---LGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG---GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCC---CCCccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 467899999998874 44432111100 00112222455554 577788999999998753 55689
Q ss_pred CeEEEEEecCC
Q 039052 131 QRLLVEVMGLH 141 (188)
Q Consensus 131 mKl~I~V~~~~ 141 (188)
|.-.+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 98888887644
No 61
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=47.49 E-value=7 Score=32.53 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.2
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
.++.+.||.+.|.|-+..|=++||.-.+.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45568999999999999999999999999864
No 62
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=45.72 E-value=7.9 Score=27.40 Aligned_cols=14 Identities=50% Similarity=0.854 Sum_probs=11.3
Q ss_pred CeEecCceeEEE-Ee
Q 039052 65 NRFHVGDSLSFE-YK 78 (188)
Q Consensus 65 ~~F~VGDtLvF~-y~ 78 (188)
+.|++||.|.|+ |+
T Consensus 36 r~~~vGD~l~l~E~~ 50 (83)
T 3iuw_A 36 RNFQVGDILILEEYM 50 (83)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEcc
Confidence 459999999985 53
No 63
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=44.93 E-value=2.8 Score=35.28 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGL 140 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~ 140 (188)
.++.+.+|.++|-|-...|-..||...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEecC
Confidence 567788999999999999999999998888754
No 64
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=44.29 E-value=39 Score=27.88 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=46.1
Q ss_pred CeEecCceeEEEEeC-----CeEEEE--eccCCCCCCCCCCcccccCCce---EEEecCcccEEEEeCCC---CCCCCCC
Q 039052 65 NRFHVGDSLSFEYKN-----DSVLEV--DKWGYYHCNSSNATVAFNNGKS---VFKLDRPGPFYFISGTP---DHCKNGQ 131 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-----hsV~~V--~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~---~HC~~Gm 131 (188)
.+++.||.+..++.| |++.-= .....|.=. .........|.+ .|+.+.+|++||-|-.. .|=..||
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p-~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 146 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTP-GIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGL 146 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCT-TSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCC-CccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcC
Confidence 578999999998874 333221 011111100 000012344543 57778999999999875 3556899
Q ss_pred eEEEEEecCCC
Q 039052 132 RLLVEVMGLHP 142 (188)
Q Consensus 132 Kl~I~V~~~~~ 142 (188)
.-.|.|.....
T Consensus 147 ~G~liV~~~~~ 157 (288)
T 3gdc_A 147 YGGFIVEPKEG 157 (288)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEeCCcc
Confidence 98998876554
No 65
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=44.15 E-value=16 Score=31.61 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCeEecCceeEEEEeCCeEEEE-eccCCCCCCCCCCcccccCCc---eEEEecCcccEEEEeCCCCCCCCC---CeEEEE
Q 039052 64 RNRFHVGDSLSFEYKNDSVLEV-DKWGYYHCNSSNATVAFNNGK---SVFKLDRPGPFYFISGTPDHCKNG---QRLLVE 136 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~hsV~~V-~~~~Y~~C~~s~p~~~~~~G~---~~v~L~~~G~~YFic~~~~HC~~G---mKl~I~ 136 (188)
.-.+.+|..+.|.-+..||.-- .-.++ . -...--.|. ..++.+++|.||..|+. -|..| |++.|.
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~IP~l-----g-~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~ 223 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFIPRL-----G-SQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKFKAI 223 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEEGGG-----T-EEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCEECC
T ss_pred eEEEeCCCEEEEEEEeCCccceeeeccc-----C-cEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhccceEE
Confidence 4467788888888875333221 10111 1 001112343 25788999999999985 77764 888888
Q ss_pred Ee
Q 039052 137 VM 138 (188)
Q Consensus 137 V~ 138 (188)
|.
T Consensus 224 vv 225 (315)
T 1fft_B 224 AT 225 (315)
T ss_dssp BC
T ss_pred Ee
Confidence 87
No 66
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=43.59 E-value=17 Score=31.72 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=44.1
Q ss_pred CCeEecCceeEEEEeC-------CeEEEEeccCCCCCCCCCC-cccccCCce---EEEecCcccEEEEeC---CCCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN-------DSVLEVDKWGYYHCNSSNA-TVAFNNGKS---VFKLDRPGPFYFISG---TPDHCKN 129 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~-------hsV~~V~~~~Y~~C~~s~p-~~~~~~G~~---~v~L~~~G~~YFic~---~~~HC~~ 129 (188)
..+++.||++.+++.| |++.-=-....+ ..+ ......|.+ .|+.+.+|++||-|- ...|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~d----G~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPG----GGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG----GGGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCC----CCCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 3578899999988764 222210000000 001 112345544 567788999999994 3456668
Q ss_pred CCeEEEEEecCC
Q 039052 130 GQRLLVEVMGLH 141 (188)
Q Consensus 130 GmKl~I~V~~~~ 141 (188)
||.-.+.|....
T Consensus 137 Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 137 GMYGLILVEPKE 148 (442)
T ss_dssp TCEEEEEEECTT
T ss_pred ccEEEEEEeCCC
Confidence 999999888654
No 67
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=41.70 E-value=18 Score=33.26 Aligned_cols=73 Identities=19% Similarity=0.469 Sum_probs=46.1
Q ss_pred CCeEecCceeEEEEeCCeE----EEE-eccCCCCCCCCCCc-ccccCCceEEEecCcccEEEEeCCCCCCCCCC-eEEEE
Q 039052 64 RNRFHVGDSLSFEYKNDSV----LEV-DKWGYYHCNSSNAT-VAFNNGKSVFKLDRPGPFYFISGTPDHCKNGQ-RLLVE 136 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~hsV----~~V-~~~~Y~~C~~s~p~-~~~~~G~~~v~L~~~G~~YFic~~~~HC~~Gm-Kl~I~ 136 (188)
+.-.+-|-.+.|.=-..+| +.+ +-+....|....-. ..|.-| ....| ++|.|||..+..+-|++|- |+.|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG-KMYSV-ESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc-ceEec-CCCceEecCChHHHHhCCceeEEEE
Confidence 3456677777775333222 233 45566678875321 112222 23444 4799999999999999997 99998
Q ss_pred Ee
Q 039052 137 VM 138 (188)
Q Consensus 137 V~ 138 (188)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 74
No 68
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=39.79 E-value=18 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=17.4
Q ss_pred ccCCeEecCceeEEEEeC-CeEEEE
Q 039052 62 ATRNRFHVGDSLSFEYKN-DSVLEV 85 (188)
Q Consensus 62 A~~~~F~VGDtLvF~y~~-hsV~~V 85 (188)
+.-..+++||.+.|.+.+ .+-+++
T Consensus 49 ~~l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 49 TKMSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp CEECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhhhcCCCCCEEEEEEEEeCCEEEE
Confidence 344689999999999984 433444
No 69
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=39.23 E-value=18 Score=25.37 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=18.9
Q ss_pred ccccCCeEecCceeEEEEeC-CeEEEE
Q 039052 60 QWATRNRFHVGDSLSFEYKN-DSVLEV 85 (188)
Q Consensus 60 ~WA~~~~F~VGDtLvF~y~~-hsV~~V 85 (188)
+.+.-..+++||.+.|.+.+ .+-+++
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~~~~~~~i 81 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQQGNLSLL 81 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEEETTEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEeCCEEEE
Confidence 44555789999999999984 443444
No 70
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=38.25 E-value=12 Score=28.59 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=18.4
Q ss_pred ccCCeEecCceeEEEEeCC--eEEEE
Q 039052 62 ATRNRFHVGDSLSFEYKND--SVLEV 85 (188)
Q Consensus 62 A~~~~F~VGDtLvF~y~~h--sV~~V 85 (188)
+..+.+++||.++|++.+. -+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 5567899999999999852 25555
No 71
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=35.10 E-value=24 Score=29.69 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=28.6
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCC
Q 039052 108 VFKLDRPGPFYFISGTPDHC-KNGQRLLVEVMGLH 141 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC-~~GmKl~I~V~~~~ 141 (188)
.|+.+.+|.++|.|....|| ..||.-.+.|....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 56778899999999999998 78998888887543
No 72
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=31.45 E-value=55 Score=27.32 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=28.6
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEecCCCCC
Q 039052 113 RPGPFYFISGTPDHCKNGQRLLVEVMGLHPIS 144 (188)
Q Consensus 113 ~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~~ 144 (188)
.||.+.|-|-+..|=.+||.-.+.|.......
T Consensus 245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~~ 276 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTI 276 (313)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTCCC
T ss_pred CCEeEEEEeCChHHHHCCCeEEEEEECCCCCC
Confidence 48999999999999999999999999887653
No 73
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=30.83 E-value=1.2e+02 Score=25.41 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred eEecCceeEEEEeC-----CeEEEEeccCCCCCCCCCC----cccccCCce---EEEecCcccEEEEeCCCCCC---CCC
Q 039052 66 RFHVGDSLSFEYKN-----DSVLEVDKWGYYHCNSSNA----TVAFNNGKS---VFKLDRPGPFYFISGTPDHC---KNG 130 (188)
Q Consensus 66 ~F~VGDtLvF~y~~-----hsV~~V~~~~Y~~C~~s~p----~~~~~~G~~---~v~L~~~G~~YFic~~~~HC---~~G 130 (188)
+++.||+|..++.| +++.----.........+. ......|.+ .++.+++|++||-|-....= ..|
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~G 116 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRG 116 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHSC
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccCC
Q ss_pred CeEEEEEecCCC
Q 039052 131 QRLLVEVMGLHP 142 (188)
Q Consensus 131 mKl~I~V~~~~~ 142 (188)
|.-.+.|.....
T Consensus 117 l~G~lIV~~~~~ 128 (318)
T 3g5w_A 117 MWGPLIVEPKNP 128 (318)
T ss_dssp CEEEEEEECSSC
T ss_pred CEEEEEEcCCCc
No 74
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=29.89 E-value=64 Score=27.20 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=0.0
Q ss_pred eEecCceeEEEEeC----------CeEEEEec--cCCCCCCCCCCcccccCCceEEEecCcccEEEEeCCCC--CCC-CC
Q 039052 66 RFHVGDSLSFEYKN----------DSVLEVDK--WGYYHCNSSNATVAFNNGKSVFKLDRPGPFYFISGTPD--HCK-NG 130 (188)
Q Consensus 66 ~F~VGDtLvF~y~~----------hsV~~V~~--~~Y~~C~~s~p~~~~~~G~~~v~L~~~G~~YFic~~~~--HC~-~G 130 (188)
+++.||++.+++.| |.+.+... .|--.=....++.--.+=.-.|+++++|+|||-|.... |=. .|
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~G 117 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRG 117 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSC
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCC
Q ss_pred CeEEEEEecCCC
Q 039052 131 QRLLVEVMGLHP 142 (188)
Q Consensus 131 mKl~I~V~~~~~ 142 (188)
|--.+.|.....
T Consensus 118 l~G~liV~p~~~ 129 (339)
T 2zwn_A 118 MWGPLIVDPKQP 129 (339)
T ss_dssp CEEEEEEECSSC
T ss_pred ceEeEEecCCCc
No 75
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=29.19 E-value=36 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=19.0
Q ss_pred ccccCCeEecCceeEEEEeC-Ce-EEEE
Q 039052 60 QWATRNRFHVGDSLSFEYKN-DS-VLEV 85 (188)
Q Consensus 60 ~WA~~~~F~VGDtLvF~y~~-hs-V~~V 85 (188)
+.+.-+.+++||.+.|.+.+ .+ -+++
T Consensus 41 ~~~~l~~lk~Gd~V~F~~~~~~~g~~~i 68 (82)
T 2l55_A 41 PAGLPQGLKAGDRVAFSFRLDPHGMATL 68 (82)
T ss_dssp TTCCCSSCSTTCEEEEEEEEETTTEEEE
T ss_pred ChhHhhcCCCCCEEEEEEEECCCCeEEE
Confidence 44456789999999999985 44 4444
No 76
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=28.64 E-value=40 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=29.3
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCCC
Q 039052 108 VFKLDRPGPFYFISGTPDHC-KNGQRLLVEVMGLHP 142 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC-~~GmKl~I~V~~~~~ 142 (188)
.|+.+++|.|+|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 57788999999999998887 789988888876554
No 77
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=27.74 E-value=21 Score=24.52 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.1
Q ss_pred cCCeEecCceeEEEEeC
Q 039052 63 TRNRFHVGDSLSFEYKN 79 (188)
Q Consensus 63 ~~~~F~VGDtLvF~y~~ 79 (188)
.+++|.+||.|+|--..
T Consensus 26 ~rN~f~~GD~iEi~~P~ 42 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPE 42 (89)
T ss_dssp ESSCBCTTCEEEEESTT
T ss_pred EcCCcCCCCEEEEEcCC
Confidence 57899999999887554
No 78
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=26.33 E-value=16 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=10.5
Q ss_pred CeEecCceeEEE
Q 039052 65 NRFHVGDSLSFE 76 (188)
Q Consensus 65 ~~F~VGDtLvF~ 76 (188)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 478999999995
No 79
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=25.80 E-value=67 Score=26.81 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=28.0
Q ss_pred EEEecCcccEEEEeCCC-CCCCCCCeEEEEEecCCC
Q 039052 108 VFKLDRPGPFYFISGTP-DHCKNGQRLLVEVMGLHP 142 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~-~HC~~GmKl~I~V~~~~~ 142 (188)
.|+.+.+|.++|.|... +|=..||.-.+.|.....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 46778899999999986 465789998899876443
No 80
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=25.38 E-value=42 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 039052 113 RPGPFYFISGTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 113 ~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
.+|.++|-|-+..|=..||...+.|......
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~ 269 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 269 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCCC
Confidence 4899999999999999999999999877554
No 81
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=24.25 E-value=37 Score=31.31 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=28.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMG 139 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~ 139 (188)
.|+.+.+|.+.|-|-+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 46678899999999999999999999999964
No 82
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=23.02 E-value=64 Score=28.44 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=45.1
Q ss_pred CeEecCceeEEEEeC-----CeE-----EEEeccCCCCCCCCCCcccccCCce---EEEecC-cccEEEEeCC----CCC
Q 039052 65 NRFHVGDSLSFEYKN-----DSV-----LEVDKWGYYHCNSSNATVAFNNGKS---VFKLDR-PGPFYFISGT----PDH 126 (188)
Q Consensus 65 ~~F~VGDtLvF~y~~-----hsV-----~~V~~~~Y~~C~~s~p~~~~~~G~~---~v~L~~-~G~~YFic~~----~~H 126 (188)
.+++.||+|+.++.| +++ .+-.. .|. .+......|.+ .|+++. +|++||=|-. ..|
T Consensus 52 i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~--~DG----~~~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q 125 (451)
T 2uxt_A 52 IRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP--LMG----GPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQ 125 (451)
T ss_dssp EEEETTCEEEEEEEECSSSCBCEEEETCCCCGG--GSC----SGGGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCccEEECCccCCCC--CCC----CCcCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhh
Confidence 468899999999874 233 22111 111 11122344544 678886 8999999987 335
Q ss_pred CCCCCeEEEEEecCC
Q 039052 127 CKNGQRLLVEVMGLH 141 (188)
Q Consensus 127 C~~GmKl~I~V~~~~ 141 (188)
=..||--.+.|....
T Consensus 126 ~~~Gl~G~liV~~~~ 140 (451)
T 2uxt_A 126 VYNGLAGMWLVEDEV 140 (451)
T ss_dssp HHTTCEEEEEEECHH
T ss_pred HhhcceEEEEEecCc
Confidence 558998888887643
No 83
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.23 E-value=37 Score=24.16 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=23.5
Q ss_pred EEEecCCCCCCCCCCCCcccccccccCCeEecCceeEEE
Q 039052 38 DFKVGDGFGWQEPGHNNTAMYSQWATRNRFHVGDSLSFE 76 (188)
Q Consensus 38 ~~~VGg~~GW~~~p~~~~~~Y~~WA~~~~F~VGDtLvF~ 76 (188)
..++||+.| . ...+-|... |..||.+.++
T Consensus 41 ~~~l~DeTG-~-------I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-R-------IRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-E-------EEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-e-------EEEEEEcCc--cCCCCEEEEE
Confidence 577888877 2 458899877 9999999988
No 84
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=21.48 E-value=1.8e+02 Score=26.14 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=47.4
Q ss_pred CCeEecCceeEEEEeC--C----eE-----EEEeccCCCCC-CCCCCcccccCCce---EEEecCcccEEEEeCCCCCCC
Q 039052 64 RNRFHVGDSLSFEYKN--D----SV-----LEVDKWGYYHC-NSSNATVAFNNGKS---VFKLDRPGPFYFISGTPDHCK 128 (188)
Q Consensus 64 ~~~F~VGDtLvF~y~~--h----sV-----~~V~~~~Y~~C-~~s~p~~~~~~G~~---~v~L~~~G~~YFic~~~~HC~ 128 (188)
..+++.||+|+.++.| . ++ .+-.....|.= ..+ ......|.+ .|+++.+|++||=|-...+=.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vt--q~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASIS--QCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTT--BCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccc--cCCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 3588999999998874 1 22 11100001110 000 011234544 677889999999999887777
Q ss_pred CCCeEEEEEecCC
Q 039052 129 NGQRLLVEVMGLH 141 (188)
Q Consensus 129 ~GmKl~I~V~~~~ 141 (188)
.|+--.+.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 8999999998764
No 85
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=20.61 E-value=73 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.8
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 039052 108 VFKLDRPGPFYFISGTPDHCKNGQRLLVEVMGLH 141 (188)
Q Consensus 108 ~v~L~~~G~~YFic~~~~HC~~GmKl~I~V~~~~ 141 (188)
.|+.+.+|.++|-|-...|=..||...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 5677889999999999889888999888886543
No 86
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=20.53 E-value=27 Score=25.61 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.4
Q ss_pred CeEecCceeEEE
Q 039052 65 NRFHVGDSLSFE 76 (188)
Q Consensus 65 ~~F~VGDtLvF~ 76 (188)
+.+++||.|.|+
T Consensus 32 ~~ikvGD~I~f~ 43 (109)
T 2z0t_A 32 RQIKPGDIIIFE 43 (109)
T ss_dssp GGCCTTCEEEEG
T ss_pred hcCCCCCEEEEC
Confidence 578999999993
No 87
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=20.47 E-value=47 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=28.2
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 039052 112 DRPGPFYFISGTPDHCKNGQRLLVEVMGLHPI 143 (188)
Q Consensus 112 ~~~G~~YFic~~~~HC~~GmKl~I~V~~~~~~ 143 (188)
+.||.+.|-|-+..|=.+||...+.|......
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence 45899999999999999999999999877654
Done!