Query 039053
Match_columns 357
No_of_seqs 91 out of 102
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06830 Root_cap: Root cap; 100.0 5.6E-37 1.2E-41 232.6 3.0 57 287-343 1-57 (57)
2 PF06668 ITI_HC_C: Inter-alpha 98.7 4.5E-07 9.7E-12 82.6 12.9 132 155-310 1-137 (188)
3 smart00216 VWD von Willebrand 97.5 0.0041 8.9E-08 52.5 13.5 81 125-222 13-97 (162)
4 PF00094 VWD: von Willebrand f 96.6 0.038 8.2E-07 45.4 10.8 109 126-257 3-117 (159)
5 cd01951 lectin_L-type legume l 89.9 4.5 9.7E-05 36.4 10.7 96 133-253 70-177 (223)
6 cd00225 API3 Ascaris pepsin in 55.4 11 0.00023 34.9 2.7 26 134-165 95-120 (159)
7 PF00139 Lectin_legB: Legume l 54.5 40 0.00086 31.1 6.3 107 132-253 78-190 (236)
8 COG3354 FlaG Putative archaeal 42.0 2.4E+02 0.0053 26.2 9.2 86 147-251 49-143 (154)
9 PF07172 GRP: Glycine rich pro 39.9 16 0.00034 30.6 1.3 24 1-25 1-25 (95)
10 PF06394 Pepsin-I3: Pepsin inh 39.3 15 0.00033 30.1 1.1 36 130-179 7-43 (76)
11 PTZ00264 circumsporozoite-rela 39.0 36 0.00077 30.9 3.4 22 131-152 89-110 (148)
12 cd06899 lectin_legume_LecRK_Ar 38.0 3.4E+02 0.0073 25.3 10.2 101 133-252 78-185 (236)
13 PF07481 DUF1521: Domain of Un 37.0 80 0.0017 29.6 5.4 62 125-195 41-104 (171)
14 PF07752 S-layer: S-layer prot 36.0 2.7E+02 0.0058 27.4 9.1 105 205-331 140-258 (259)
15 PF13677 MotB_plug: Membrane M 35.7 31 0.00066 26.3 2.2 16 9-24 26-41 (58)
16 PF13650 Asp_protease_2: Aspar 35.0 97 0.0021 22.9 4.8 20 286-305 71-90 (90)
17 PF05720 Dicty_CAD: Cell-cell 34.9 42 0.0009 28.1 3.0 31 200-230 40-73 (82)
18 PF04790 Sarcoglycan_1: Sarcog 32.7 3.6E+02 0.0078 26.4 9.4 21 142-162 74-94 (264)
19 KOG1446 Histone H3 (Lys4) meth 31.8 1.6E+02 0.0035 30.0 7.0 127 116-295 130-272 (311)
20 PF09087 Cyc-maltodext_N: Cycl 31.3 59 0.0013 27.2 3.3 39 207-251 15-56 (88)
21 PRK07734 motB flagellar motor 30.8 35 0.00076 32.3 2.2 16 8-23 27-42 (259)
22 PF12273 RCR: Chitin synthesis 30.5 34 0.00073 29.2 1.8 12 46-57 30-41 (130)
23 PRK06925 flagellar motor prote 29.1 39 0.00084 31.5 2.1 16 9-24 24-39 (230)
24 PRK08457 motB flagellar motor 29.0 38 0.00083 32.3 2.1 15 9-23 25-39 (257)
25 PF13510 Fer2_4: 2Fe-2S iron-s 28.8 46 0.00099 26.4 2.2 57 206-263 2-71 (82)
26 PRK06667 motB flagellar motor 28.6 40 0.00086 31.8 2.1 15 9-23 27-41 (252)
27 PRK06778 hypothetical protein; 26.8 44 0.00096 32.7 2.2 16 8-23 30-45 (289)
28 COG1245 Predicted ATPase, RNas 26.4 45 0.00097 36.2 2.2 34 261-304 72-109 (591)
29 PRK09038 flagellar motor prote 26.0 47 0.001 32.1 2.2 16 8-23 25-40 (281)
30 PRK06742 flagellar motor prote 25.8 48 0.001 31.0 2.1 15 9-23 21-35 (225)
31 PF07944 DUF1680: Putative gly 25.5 3.2E+02 0.0068 28.5 8.1 92 155-263 394-499 (520)
32 PF03633 Glyco_hydro_65C: Glyc 25.3 81 0.0018 22.9 2.8 37 183-219 13-52 (54)
33 PRK00407 hypothetical protein; 25.3 88 0.0019 27.5 3.5 72 176-248 63-135 (139)
34 cd05479 RP_DDI RP_DDI; retrope 24.4 52 0.0011 27.5 1.9 24 207-230 18-43 (124)
35 COG2946 Putative phage replica 23.8 1.4E+02 0.003 31.2 5.0 70 113-222 192-261 (377)
36 PRK09041 motB flagellar motor 23.2 57 0.0012 32.5 2.2 16 8-23 34-49 (317)
37 PF11008 DUF2846: Protein of u 23.0 2.3E+02 0.005 23.5 5.4 61 145-213 32-92 (117)
38 PRK11546 zraP zinc resistance 22.1 71 0.0015 29.0 2.4 27 1-27 1-27 (143)
39 PRK06944 sulfur carrier protei 21.7 76 0.0016 23.4 2.1 15 208-222 1-15 (65)
40 PRK08944 motB flagellar motor 21.4 64 0.0014 31.8 2.1 13 10-22 27-39 (302)
41 PRK05659 sulfur carrier protei 21.3 78 0.0017 23.5 2.1 15 208-222 1-15 (66)
No 1
>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die [].This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=100.00 E-value=5.6e-37 Score=232.59 Aligned_cols=57 Identities=65% Similarity=1.158 Sum_probs=56.5
Q ss_pred ceeEeccccccccccceeecCCccccccCCcccccccCCCccccCCcccCCCCceee
Q 039053 287 QFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTPSLYSPLCNFCRF 343 (357)
Q Consensus 287 ~FKF~~Ltd~V~GVLGQTYRpdyvn~vk~gv~MPvmGGe~kY~TSsLFsaDC~v~rF 343 (357)
||||++|||+|||||||||||||+|++|+||+|||||||++|+|||||||||++|||
T Consensus 1 ~FkF~~Lt~~V~GVLGQTYr~~yvn~vk~g~~MPvmGG~~~y~ts~lfs~DC~v~rF 57 (57)
T PF06830_consen 1 QFKFYSLTDDVHGVLGQTYRPDYVNPVKVGVAMPVMGGEDKYRTSSLFSTDCAVCRF 57 (57)
T ss_pred CceeeccccccceeccccccCCcccccccCCCCccccCCccceeccccccCcchhcC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF06668 ITI_HC_C: Inter-alpha-trypsin inhibitor heavy chain C-terminus; InterPro: IPR010600 This entry represents the C-terminal region of inter-alpha-trypsin inhibitor heavy chains. Inter-alpha-trypsin inhibitors are glycoproteins with a high inhibitory activity against trypsin, built up from different combinations of four polypeptides: bikunin and the three heavy chains that belong to this family (HC1, HC2, HC3). The heavy chains do not have any protease inhibitory properties but have the capacity to interact in vitro and in vivo with hyaluronic acid, which promotes the stability of the extra-cellular matrix. This domain is associated with the VWA domain IPR002035 from INTERPRO.; GO: 0004867 serine-type endopeptidase inhibitor activity, 0030212 hyaluronan metabolic process
Probab=98.65 E-value=4.5e-07 Score=82.57 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=88.3
Q ss_pred CCCceeeeEEeecCCC-CCCCCceeeeeeeeeeCCceEEEEeee--ccCCCccCceEEEEECCeEeeecCCCCCeeeeCC
Q 039053 155 DDNLQINAHFIGTRPQ-GRTRDFTWVQALAVMFDTHTLVIAANR--VSHWNDDVDALTVRWDGQTVDVRTDGEAEWRIND 231 (357)
Q Consensus 155 D~~LhINAHFIG~R~~-g~~RDfTWIQALgI~F~~H~l~igA~k--~~~Wdd~vD~l~v~~dG~~v~ip~~~~a~W~s~~ 231 (357)
|..+.+|.+.||..++ +..+-=|....|||.|+.-.+.|+.+. ..-+ +..+++.++|+..-.. .
T Consensus 1 ~sGi~VnGqliGak~~~~~~~~~TYF~~i~I~~~~~~~~I~vt~~~I~l~-~g~~~~~l~w~~t~~~------------~ 67 (188)
T PF06668_consen 1 DSGITVNGQLIGAKKPPGEKKLRTYFGRIGITFQKPDVKIEVTPEKITLT-DGRRRSVLSWSDTASV------------K 67 (188)
T ss_pred CCCEEEeCEEccCCCCCCCCCCCceEEEEEEEECCCCeEEEEEccEEEEe-cCCCceeEeEcceEEE------------c
Confidence 6789999999998653 378888999999999987766666653 2222 2233334444332221 2
Q ss_pred CCceEEEEecCCCeEEEEEcceEEEEEEEEecccCCCcccccCCCCCCccccccccee-EeccccccccccceeecC-Cc
Q 039053 232 EREVVVERTDDTNSVRVTVSGLLEMDVKIRPIGAEENRTHNYQLPAGDAFAHLETQFR-FSNLSKLVEGVLGKTYRP-DY 309 (357)
Q Consensus 232 ~~~l~V~Rt~~~N~V~V~l~gv~~i~a~VVPIt~edsRiHnYgvt~dD~fAHLel~FK-F~~Ltd~V~GVLGQTYRp-dy 309 (357)
.|+|.|+=. ..-.|.|++.+-+++.+-.-.+.+ +.+.-.-||.+.-- =..||++|||+|||-|++ +|
T Consensus 68 ~~~l~v~v~-k~~~l~v~~~~~v~F~Il~Hr~~~----------~~~~~~d~LGfYi~ds~~lS~~vhGLLGQF~~~~~~ 136 (188)
T PF06668_consen 68 QPGLEVSVN-KNKNLTVTLGDGVTFVILLHRVWK----------KHPYQRDFLGFYILDSHGLSPSVHGLLGQFYHEPDF 136 (188)
T ss_pred cCcEEEEEE-CCceEEEEeCCceEEEEEEEeecC----------CCCCCCCeeEEEecCCCCCCCcccccccCccCCCce
Confidence 356777633 335699999999999986554433 33333346654332 268999999999999999 66
Q ss_pred c
Q 039053 310 V 310 (357)
Q Consensus 310 v 310 (357)
.
T Consensus 137 ~ 137 (188)
T PF06668_consen 137 E 137 (188)
T ss_pred E
Confidence 4
No 3
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=97.49 E-value=0.0041 Score=52.52 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=64.1
Q ss_pred CcccCCeeeecCCceEEeeccCCCceEEeeC-C---CceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccC
Q 039053 125 SLCYDPRFVGGDGVMFYFHGAKGGNFAIVSD-D---NLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSH 200 (357)
Q Consensus 125 s~C~DPRFiGGDG~~FYFHGkkd~dFclVSD-~---~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~ 200 (357)
++-+||++.==||.+|.|+| +-.|.|+.| . +|.|-++.-... . +-+|..++-|..+++.+.+...
T Consensus 13 ~v~g~~~~~TFDg~~y~~~g--~C~yvL~~~~~~~~~f~V~~~~~~~~----~-~~~~~~~v~v~~~~~~i~~~~~---- 81 (162)
T smart00216 13 SVSGDPHYTTFDGVAYTFPG--NCYYVLAQDCSSEPTFSVLLKNVPCG----G-GATCLKSVKVELNGDEIELKDD---- 81 (162)
T ss_pred EEcCCCCeECcCCCEEeecC--ceEEEEEEECCCCCCEEEEEEecCCC----C-CceEEEEEEEEECCEEEEEEeC----
Confidence 37889999999999999966 668999988 3 666666655332 1 2689999999999988777631
Q ss_pred CCccCceEEEEECCeEeeecCC
Q 039053 201 WNDDVDALTVRWDGQTVDVRTD 222 (357)
Q Consensus 201 Wdd~vD~l~v~~dG~~v~ip~~ 222 (357)
.++|.+||+++.+|..
T Consensus 82 ------~~~v~vng~~v~~p~~ 97 (162)
T smart00216 82 ------NGTVTVNGQQVSLPYK 97 (162)
T ss_pred ------CCEEEECCEEeeCCcC
Confidence 6899999999999874
No 4
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=96.58 E-value=0.038 Score=45.37 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=71.9
Q ss_pred cccCCeeeecCCceEEeeccCCCceE--EeeCCC----ceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeecc
Q 039053 126 LCYDPRFVGGDGVMFYFHGAKGGNFA--IVSDDN----LQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVS 199 (357)
Q Consensus 126 ~C~DPRFiGGDG~~FYFHGkkd~dFc--lVSD~~----LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~ 199 (357)
+=+||+|+==||..|.|+| +..|- |+.|.. +++.++.. +.+.....-+++.+|.|.+++|.+.|....
T Consensus 3 v~g~~~~~TFDg~~y~~~~--~c~y~~vl~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~v~i~~~~~~i~i~~~~-- 76 (159)
T PF00094_consen 3 VYGDPHITTFDGKSYSFPG--NCTYILVLAQDCSSDPKFSFSVENK--NCPCGQSGTSCTRKVTIRLGNHEIEIKPNN-- 76 (159)
T ss_pred EeCCCeEEcCCCCEEecCC--CceEEEEeecccCccccccccceee--eeccCCCCcceeeEEEEEcccceeeEeccc--
Confidence 3478999999999999999 66788 776632 45555432 112222233499999999999988886543
Q ss_pred CCCccCceEEEEECCeEeeecCCCCCeeeeCCCCceEEEEecCCCeEEEEEcceEEEE
Q 039053 200 HWNDDVDALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDTNSVRVTVSGLLEMD 257 (357)
Q Consensus 200 ~Wdd~vD~l~v~~dG~~v~ip~~~~a~W~s~~~~~l~V~Rt~~~N~V~V~l~gv~~i~ 257 (357)
...+.+||+++.+|. . ..+..|+++. ...+.|....-++|.
T Consensus 77 -------~~~v~vng~~~~~p~------~---~~~~~i~~~~-~~~~~v~~~~~~~v~ 117 (159)
T PF00094_consen 77 -------GDQVTVNGQPVSLPY------W---SSGGSIERYS-GGFVVVVFSSGVRVQ 117 (159)
T ss_pred -------cceEEEeeecccCcc------c---cCcceEEeec-cccEEEEEecCCeEE
Confidence 788999999999843 2 1233666664 233444444444443
No 5
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=89.86 E-value=4.5 Score=36.44 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=58.7
Q ss_pred eecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEE
Q 039053 133 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRW 212 (357)
Q Consensus 133 iGGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~ 212 (357)
.||||..|.||......-.. +.. ..++.-..- -+.|+|-||+|+= ...||.+.+|+.|.+
T Consensus 70 ~~gdG~aF~l~~~~~~~~~~-~g~------------~~~lG~~~~-~~~~aVefDT~~N------~~~~dp~~~higi~~ 129 (223)
T cd01951 70 NGADGIAFVLQNDPAGALGG-GGG------------GGGLGYGGI-GNSVAVEFDTYKN------DDNNDPNGNHISIDV 129 (223)
T ss_pred CCCCcEEEEEecCCCCcccc-CCC------------CCccCcccc-CCeEEEEEecccc------CCCCCCCCCEEEEEc
Confidence 58999999999765322111 100 011111111 2588999998731 223888999999999
Q ss_pred CCeEee-----------ecCCCC-CeeeeCCCCceEEEEecCCCeEEEEEcce
Q 039053 213 DGQTVD-----------VRTDGE-AEWRINDEREVVVERTDDTNSVRVTVSGL 253 (357)
Q Consensus 213 dG~~v~-----------ip~~~~-a~W~s~~~~~l~V~Rt~~~N~V~V~l~gv 253 (357)
+|..-. ++.... .+|. .+.|+.....+.+.|+|.+.
T Consensus 130 n~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~v~I~Y~~~~~~L~v~l~~~ 177 (223)
T cd01951 130 NGNGNNTALATSLGSASLPNGTGLGNEH-----TVRITYDPTTNTLTVYLDNG 177 (223)
T ss_pred CCCCCCcccccccceeeCCCccCCCCEE-----EEEEEEeCCCCEEEEEECCC
Confidence 988522 111111 2233 48888888889999999875
No 6
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=55.37 E-value=11 Score=34.89 Aligned_cols=26 Identities=23% Similarity=0.628 Sum_probs=23.9
Q ss_pred ecCCceEEeeccCCCceEEeeCCCceeeeEEe
Q 039053 134 GGDGVMFYFHGAKGGNFAIVSDDNLQINAHFI 165 (357)
Q Consensus 134 GGDG~~FYFHGkkd~dFclVSD~~LhINAHFI 165 (357)
++|-++|||-| |+|-+.-|-||.+|+
T Consensus 95 ~~DTtq~yFdG------C~VqnNklYvg~~~~ 120 (159)
T cd00225 95 PDDTTQFYFDG------CMVQNNKVYVGNTYA 120 (159)
T ss_pred CCcceEEEEee------eEEECCEEEECCEEe
Confidence 67899999987 999999999999988
No 7
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=54.46 E-value=40 Score=31.07 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=57.0
Q ss_pred eeecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEE
Q 039053 132 FVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVR 211 (357)
Q Consensus 132 FiGGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~ 211 (357)
--||||..|.+|...+ ...- --.-+.|.-+.. .-...=-++|+|-||+++ -.....|++ +|+-|-
T Consensus 78 ~~~~dGlAFvi~~~~~--~~~~------~~g~~lG~~~~~-~~~~~~~~~vAVEFDT~~----N~~~~d~~~--nHIgI~ 142 (236)
T PF00139_consen 78 NNGGDGLAFVIQPDPN--LPGG------SSGGYLGLFNSS-TDGNGINNSVAVEFDTYK----NPEYNDPDD--NHIGID 142 (236)
T ss_dssp SS-BEEEEEEEEETTS--STTT------SSGGGTTTSSSS-STTGGGGCEEEEEEETST----CGGGTTTSS--SEEEEE
T ss_pred ccCCCceEEEEecCcc--cccC------CCCCccCccccc-cCCCccCcEEEEEEeeee----cccccccCC--CEEEEE
Confidence 3489999988887651 1100 112233331110 000113478999999887 122334444 999999
Q ss_pred ECCeEeeecCCCC--Ceeee----CCCCceEEEEecCCCeEEEEEcce
Q 039053 212 WDGQTVDVRTDGE--AEWRI----NDEREVVVERTDDTNSVRVTVSGL 253 (357)
Q Consensus 212 ~dG~~v~ip~~~~--a~W~s----~~~~~l~V~Rt~~~N~V~V~l~gv 253 (357)
+||..-.--...+ ..+.. ...-.+.|+....+..+.|.|.+.
T Consensus 143 ~n~~~s~~~~~~~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~ 190 (236)
T PF00139_consen 143 VNSVVSNKTASAGYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDN 190 (236)
T ss_dssp ESSSSESEEEE----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEET
T ss_pred CCCCcccccccccccccccccccCCcEEEEEEEEcCCccEEEEEEecc
Confidence 9986433211000 01111 111247888888888888888776
No 8
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=42.03 E-value=2.4e+02 Score=26.20 Aligned_cols=86 Identities=24% Similarity=0.215 Sum_probs=51.4
Q ss_pred CCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEECCeEe-----eecC
Q 039053 147 GGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTV-----DVRT 221 (357)
Q Consensus 147 d~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~dG~~v-----~ip~ 221 (357)
.+||+|++|++ +|+.--- |-+ .+..|||--+--..--.+-+.+.|-+||+-+ ..-.
T Consensus 49 ~~dFaIIndPg-~i~~~~~---------~g~---------~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~ 109 (154)
T COG3354 49 QTDFAIINDPG-QIPYVGT---------DGP---------YTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTS 109 (154)
T ss_pred hccEEEecCCC-CCccccC---------CCc---------eEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEe
Confidence 47899999986 3332111 000 1367888877777777788999999999543 3444
Q ss_pred CCCCeee-eC-CCC-ceEEEEe-cCCCeEEEEEc
Q 039053 222 DGEAEWR-IN-DER-EVVVERT-DDTNSVRVTVS 251 (357)
Q Consensus 222 ~~~a~W~-s~-~~~-~l~V~Rt-~~~N~V~V~l~ 251 (357)
..++.|+ +| .+- +++|--. +--++|.|-++
T Consensus 110 ~~gs~i~l~PG~Vg~ev~vn~~lSGyhri~V~~~ 143 (154)
T COG3354 110 VNGSSIRLSPGQVGREVTVNEALSGYHRIVVSLN 143 (154)
T ss_pred cCCCeeEecCCceeeEEEeccCCCcceEEEEEcC
Confidence 6788896 22 222 2222222 23455666555
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.88 E-value=16 Score=30.64 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=10.3
Q ss_pred CCcccchHHH-HHHHHHHHHhhhcee
Q 039053 1 MDTRISSVLV-LVAFMLAFISMEASF 25 (357)
Q Consensus 1 m~~~~~~~~~-~~~~~~~~~~~~~~~ 25 (357)
|+ .|..+|+ |+...+|||+.|++.
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhhh
Confidence 66 4444333 222234445555543
No 10
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=39.33 E-value=15 Score=30.08 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=25.7
Q ss_pred Ceee-ecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceee
Q 039053 130 PRFV-GGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWV 179 (357)
Q Consensus 130 PRFi-GGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWI 179 (357)
|+|- +.|-++|||-| |+|.|.-|-||.+|+ ||.||-
T Consensus 7 psFc~~~~t~~~~~~G------C~V~~nklyvng~~~--------R~Lt~~ 43 (76)
T PF06394_consen 7 PSFCTINDTTQYGFDG------CVVQNNKLYVNGKYA--------RDLTPD 43 (76)
T ss_dssp -GGG--TT-EEEEETT------EEEETTEEEETTCEE--------EE--HH
T ss_pred CCccccccceeEeeee------eEEECCEEEECCEee--------ccCCHH
Confidence 4443 45667899977 999999999999999 777764
No 11
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=39.02 E-value=36 Score=30.89 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=17.2
Q ss_pred eeeecCCceEEeeccCCCceEE
Q 039053 131 RFVGGDGVMFYFHGAKGGNFAI 152 (357)
Q Consensus 131 RFiGGDG~~FYFHGkkd~dFcl 152 (357)
-.+||-|.+||=.|+--.-|.|
T Consensus 89 vllggaglv~yn~~~grhpf~l 110 (148)
T PTZ00264 89 VLLGGAGLVFYNAGNGRHPFSL 110 (148)
T ss_pred HHhccceEEEEecCCCCCCeec
Confidence 3579999999988877666654
No 12
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=38.03 E-value=3.4e+02 Score=25.28 Aligned_cols=101 Identities=17% Similarity=0.264 Sum_probs=53.0
Q ss_pred eecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEE
Q 039053 133 VGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRW 212 (357)
Q Consensus 133 iGGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~ 212 (357)
.||||..|.++.....- . -.-.-.+|.-+..-.... =-+.|+|.||+++=. ..+|-+.+|+-|-+
T Consensus 78 ~~gdGlAF~i~~~~~~~--~------~~~G~~lG~~~~~~~~~~-~~~~vAVEFDT~~n~------~~~D~~~nHigIdv 142 (236)
T cd06899 78 LGGDGLAFFLAPTDSLP--P------ASSGGYLGLFNSSNNGNS-SNHIVAVEFDTFQNP------EFGDPDDNHVGIDV 142 (236)
T ss_pred CCCCeEEEEEecCCCCC--C------CCCcceeeeecCCCCCCc-ccceEEEEeecccCc------ccCCCCCCeEEEEc
Confidence 57999999998754321 0 011233343221100000 127889999876311 12477789999999
Q ss_pred CCeEeeecCCCCCeeeeC-------CCCceEEEEecCCCeEEEEEcc
Q 039053 213 DGQTVDVRTDGEAEWRIN-------DEREVVVERTDDTNSVRVTVSG 252 (357)
Q Consensus 213 dG~~v~ip~~~~a~W~s~-------~~~~l~V~Rt~~~N~V~V~l~g 252 (357)
|+. ... ....|.+. ..-.+.|+..+.++.+.|.|..
T Consensus 143 n~~-~S~---~~~~~~~~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~ 185 (236)
T cd06899 143 NSL-VSV---KAGYWDDDGGKLKSGKPMQAWIDYDSSSKRLSVTLAY 185 (236)
T ss_pred CCc-ccc---eeeccccccccccCCCeEEEEEEEcCCCCEEEEEEEe
Confidence 985 111 11223221 1113666666666776666643
No 13
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=37.03 E-value=80 Score=29.65 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=39.3
Q ss_pred CcccCCee-eecCCce-EEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEe
Q 039053 125 SLCYDPRF-VGGDGVM-FYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAA 195 (357)
Q Consensus 125 s~C~DPRF-iGGDG~~-FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA 195 (357)
.+-+|||| +.|||-+ |.| |++-.|-| |..=+|+-+=- |-|- .-|--.-|-|.-++..++|.-
T Consensus 41 riwGDPHvd~~Gdg~~~fDF--k~~~tf~L--~DGTKItV~T~---p~gn--g~T~askLtIt~Gd~~~~V~g 104 (171)
T PF07481_consen 41 RIWGDPHVDADGDGKTDFDF--KGDMTFQL--DDGTKITVDTV---PWGN--GMTYASKLTITNGDNAWQVEG 104 (171)
T ss_pred EEeCCCccccCCCcccceee--cCceEEEe--CCCCEEEEeee---ecCC--CcEEeeeEEEEcCCceEEEee
Confidence 36799999 9999765 999 45555544 55556654333 2221 445666677777666666643
No 14
>PF07752 S-layer: S-layer protein; InterPro: IPR006457 This domain is found tandemly duplicated in a most members of a paralogous family in the archaeon Methanosarcina acetivorans str. C2A. This domain is clearly related to the central region of a family of archaeal S-layer proteins described in IPR006454 from INTERPRO.
Probab=35.99 E-value=2.7e+02 Score=27.40 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=66.6
Q ss_pred CceEEEEECCeEeeec---CCCC--CeeeeC--CCCceEEEEe------cCCCeEEEEEcceEEEE-EEEEecccCCCcc
Q 039053 205 VDALTVRWDGQTVDVR---TDGE--AEWRIN--DEREVVVERT------DDTNSVRVTVSGLLEMD-VKIRPIGAEENRT 270 (357)
Q Consensus 205 vD~l~v~~dG~~v~ip---~~~~--a~W~s~--~~~~l~V~Rt------~~~N~V~V~l~gv~~i~-a~VVPIt~edsRi 270 (357)
---|+|+=||+.|+-- .+.. -.|... ...++.|-++ ..+..-.|.|+|++.|+ .+.+.|...|.
T Consensus 140 kv~leL~KdG~~Vd~~ii~~~~~~~~~y~~~~~~~~dv~ii~vhv~~vf~g~~~~~v~i~gi~qis~d~~~~ie~gD~-- 217 (259)
T PF07752_consen 140 KVWLELYKDGEEVDSKIISPGSDDDFVYKKDLGDIDDVPIIAVHVDNVFRGAEDSLVTIDGIWQISKDNPLEIETGDE-- 217 (259)
T ss_pred EEEEEEEECCeEEEeEEEcCCCCcceEEEeecCCCCCEEEEEEEEhheeeCCccceEEEEEeEEeccCCceEecCCCE--
Confidence 3347889999998833 2333 244432 1122222221 12334468999999999 99999987763
Q ss_pred cccCCCCCCcccccccceeEeccccccccccceeecCCccccccCCcccccccCCCccccC
Q 039053 271 HNYQLPAGDAFAHLETQFRFSNLSKLVEGVLGKTYRPDYVSHVKRGVPMPMMGGEDKYQTP 331 (357)
Q Consensus 271 HnYgvt~dD~fAHLel~FKF~~Ltd~V~GVLGQTYRpdyvn~vk~gv~MPvmGGe~kY~TS 331 (357)
|| .|+...++++ +.+++-+---.+..+....|||+- .|+++
T Consensus 218 --fG------------~mev~~is~~-----~I~m~N~~~itL~~~~~~~i~~~~-~f~va 258 (259)
T PF07752_consen 218 --FG------------KMEVDSISEN-----GIEMSNDDSITLSRDSTIEIMGDL-YFKVA 258 (259)
T ss_pred --eC------------cEEEEEecCC-----cEEEECCCCEEecCCCceEecCCe-EEEec
Confidence 55 5666666665 467776655567788888888886 55554
No 15
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=35.72 E-value=31 Score=26.29 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhce
Q 039053 9 LVLVAFMLAFISMEAS 24 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (357)
..|++|||+|.+|...
T Consensus 26 TLLl~fFVlL~s~s~~ 41 (58)
T PF13677_consen 26 TLLLAFFVLLFSMSSV 41 (58)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4589999999998754
No 16
>PF13650 Asp_protease_2: Aspartyl protease
Probab=34.97 E-value=97 Score=22.89 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=14.1
Q ss_pred cceeEeccccccccccceee
Q 039053 286 TQFRFSNLSKLVEGVLGKTY 305 (357)
Q Consensus 286 l~FKF~~Ltd~V~GVLGQTY 305 (357)
+.|-+.+....++|+||..+
T Consensus 71 ~~~~v~~~~~~~~~iLG~df 90 (90)
T PF13650_consen 71 VPFLVVDLGDPIDGILGMDF 90 (90)
T ss_pred EEEEEECCCCCCEEEeCCcC
Confidence 34555557789999999753
No 17
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=34.89 E-value=42 Score=28.15 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=26.3
Q ss_pred CCCc---cCceEEEEECCeEeeecCCCCCeeeeC
Q 039053 200 HWND---DVDALTVRWDGQTVDVRTDGEAEWRIN 230 (357)
Q Consensus 200 ~Wdd---~vD~l~v~~dG~~v~ip~~~~a~W~s~ 230 (357)
-|+. ++..-+|.+||+..+||.+.+..|+-.
T Consensus 40 lw~~~~F~v~S~kiE~~Gq~ydiPss~~~~~~~~ 73 (82)
T PF05720_consen 40 LWNNNEFKVNSGKIERNGQEYDIPSSRGSSWRDD 73 (82)
T ss_pred cccccceEeeeeeEEECCEEeeCCcccCceeecc
Confidence 5865 467788999999999999999999854
No 18
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=32.74 E-value=3.6e+02 Score=26.43 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=20.0
Q ss_pred eeccCCCceEEeeCCCceeee
Q 039053 142 FHGAKGGNFAIVSDDNLQINA 162 (357)
Q Consensus 142 FHGkkd~dFclVSD~~LhINA 162 (357)
.||++|++-.|-|+.|+.||+
T Consensus 74 I~s~~d~~l~i~s~~~v~~~~ 94 (264)
T PF04790_consen 74 IHSFRDSPLVIQSSRNVTLNA 94 (264)
T ss_pred eeeecCCCEEEEecCceEEEE
Confidence 389999999999999999999
No 19
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=31.81 E-value=1.6e+02 Score=29.96 Aligned_cols=127 Identities=21% Similarity=0.375 Sum_probs=73.2
Q ss_pred cCCCCCCC------CCcccCCeeeecCCceEEeeccCCCceEEeeCCCcee---eeEEeecCCCCCCCCceeeeeeeeee
Q 039053 116 RKPNCNGY------GSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQI---NAHFIGTRPQGRTRDFTWVQALAVMF 186 (357)
Q Consensus 116 ~kp~C~~~------Gs~C~DPRFiGGDG~~FYFHGkkd~dFclVSD~~LhI---NAHFIG~R~~g~~RDfTWIQALgI~F 186 (357)
|-++|-+. +.+-+|| +|.. |++.+..+ -| |.+-+++.|-
T Consensus 130 R~~~cqg~l~~~~~pi~AfDp-----~GLi----------fA~~~~~~-~IkLyD~Rs~dkgPF---------------- 177 (311)
T KOG1446|consen 130 RVKKCQGLLNLSGRPIAAFDP-----EGLI----------FALANGSE-LIKLYDLRSFDKGPF---------------- 177 (311)
T ss_pred cCCCCceEEecCCCcceeECC-----CCcE----------EEEecCCC-eEEEEEecccCCCCc----------------
Confidence 34566553 5667787 3443 56666664 22 6667766653
Q ss_pred CCceEEEEeeeccCCCccCceEEEEECCeEeeecCCCC-CeeeeCCCCceEEEEecCCCeEEEEEcceEEEEEEEEe---
Q 039053 187 DTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTDGE-AEWRINDEREVVVERTDDTNSVRVTVSGLLEMDVKIRP--- 262 (357)
Q Consensus 187 ~~H~l~igA~k~~~Wdd~vD~l~v~~dG~~v~ip~~~~-a~W~s~~~~~l~V~Rt~~~N~V~V~l~gv~~i~a~VVP--- 262 (357)
-.+.|.-...+.|. +|+++=||+-|-|-+..+ ..|-.+-.-.+.=+++...|.-.+. ++|.-.|
T Consensus 178 --~tf~i~~~~~~ew~----~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~------~~a~ftPds~ 245 (311)
T KOG1446|consen 178 --TTFSITDNDEAEWT----DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP------LSATFTPDSK 245 (311)
T ss_pred --eeEccCCCCcccee----eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc------eeEEECCCCc
Confidence 12333334555664 588888888888755332 2333332122444444444543333 4455444
Q ss_pred ---cccCCCcccccCCCCCCcccccccceeEecccc
Q 039053 263 ---IGAEENRTHNYQLPAGDAFAHLETQFRFSNLSK 295 (357)
Q Consensus 263 ---It~edsRiHnYgvt~dD~fAHLel~FKF~~Ltd 295 (357)
.++.|++||-|++ +.++|+..+..
T Consensus 246 Fvl~gs~dg~i~vw~~---------~tg~~v~~~~~ 272 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNL---------ETGKKVAVLRG 272 (311)
T ss_pred EEEEecCCCcEEEEEc---------CCCcEeeEecC
Confidence 5789999999985 77888887754
No 20
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=31.33 E-value=59 Score=27.16 Aligned_cols=39 Identities=28% Similarity=0.289 Sum_probs=25.4
Q ss_pred eEEEEECCeEeeecCCCCCeeeeCCCCce---EEEEecCCCeEEEEEc
Q 039053 207 ALTVRWDGQTVDVRTDGEAEWRINDEREV---VVERTDDTNSVRVTVS 251 (357)
Q Consensus 207 ~l~v~~dG~~v~ip~~~~a~W~s~~~~~l---~V~Rt~~~N~V~V~l~ 251 (357)
.|+|-+-|+.|. .++..... |+| +|+|+++.|++.|.|.
T Consensus 15 ~LQLmvyG~nI~-----~~~v~i~~-~gV~i~~v~~~~npNYLFv~L~ 56 (88)
T PF09087_consen 15 ELQLMVYGKNIA-----SAEVSISY-PGVTIKKVVKTDNPNYLFVYLD 56 (88)
T ss_dssp EEEEEEESTTGG-----GSEEEE-B-TTEEEEEEEE-SSTTEEEEEEE
T ss_pred cEEEEEecCCcc-----cCEEEEeC-CCeEEEEEEecCCCCEEEEEEe
Confidence 566777776665 34555432 454 5678899999999984
No 21
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=30.76 E-value=35 Score=32.34 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 039053 8 VLVLVAFMLAFISMEA 23 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (357)
|..|+||||||.+|..
T Consensus 27 vTlLlaFFvlL~s~s~ 42 (259)
T PRK07734 27 LTLLLALFIVLFAMSS 42 (259)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4569999999999875
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.50 E-value=34 Score=29.17 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=4.7
Q ss_pred CCCCCCCCceee
Q 039053 46 GAFDAASTHYSL 57 (357)
Q Consensus 46 ~~~~~~~~~y~~ 57 (357)
+-.|..-+.+..
T Consensus 30 G~~P~~gt~w~~ 41 (130)
T PF12273_consen 30 GLQPIYGTRWMA 41 (130)
T ss_pred CCCCcCCceecC
Confidence 333333344433
No 23
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=29.09 E-value=39 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhce
Q 039053 9 LVLVAFMLAFISMEAS 24 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (357)
..|+||||||.+|...
T Consensus 24 TlLlafFvlL~s~s~~ 39 (230)
T PRK06925 24 TLILVFFILLFSMSQI 39 (230)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 4689999999999763
No 24
>PRK08457 motB flagellar motor protein MotB; Reviewed
Probab=29.01 E-value=38 Score=32.27 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhc
Q 039053 9 LVLVAFMLAFISMEA 23 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (357)
-+|++|||||++|..
T Consensus 25 TLLL~FFVlL~smS~ 39 (257)
T PRK08457 25 SLLLALFIALYAISA 39 (257)
T ss_pred HHHHHHHHHHHHHHh
Confidence 469999999999865
No 25
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=28.77 E-value=46 Score=26.45 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=28.8
Q ss_pred ceEEEEECCeEeeecCCCCCeeeeCCCCceEEEEecCC-------------CeEEEEEcceEEEEEEEEec
Q 039053 206 DALTVRWDGQTVDVRTDGEAEWRINDEREVVVERTDDT-------------NSVRVTVSGLLEMDVKIRPI 263 (357)
Q Consensus 206 D~l~v~~dG~~v~ip~~~~a~W~s~~~~~l~V~Rt~~~-------------N~V~V~l~gv~~i~a~VVPI 263 (357)
+.++|+|||+++..+++. +-+......++.|-|.-.. ..-.|+++|.-.+.+=..|+
T Consensus 2 ~~v~i~idG~~v~~~~G~-til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v 71 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGE-TILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPV 71 (82)
T ss_dssp EEEEEEETTEEEEEEET--BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B-
T ss_pred CEEEEEECCEEEEEcCCC-HHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCC
Confidence 468999999999998743 2222211234555554222 12467888765444433443
No 26
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=28.60 E-value=40 Score=31.85 Aligned_cols=15 Identities=13% Similarity=0.467 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhc
Q 039053 9 LVLVAFMLAFISMEA 23 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (357)
-+|++|||||++|..
T Consensus 27 TLLL~FFVlL~smS~ 41 (252)
T PRK06667 27 TLLLCFFVMLFTTND 41 (252)
T ss_pred HHHHHHHHHHHHhhh
Confidence 358999999999874
No 27
>PRK06778 hypothetical protein; Validated
Probab=26.78 E-value=44 Score=32.66 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 039053 8 VLVLVAFMLAFISMEA 23 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (357)
+..|+||||||.+|..
T Consensus 30 ~TLLLaFFVlL~smS~ 45 (289)
T PRK06778 30 TLAMMALFMVLWIVNS 45 (289)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4569999999999875
No 28
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=26.43 E-value=45 Score=36.16 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=25.2
Q ss_pred EecccCCCcccccCCCCCCcccccccceeEeccc----ccccccccee
Q 039053 261 RPIGAEENRTHNYQLPAGDAFAHLETQFRFSNLS----KLVEGVLGKT 304 (357)
Q Consensus 261 VPIt~edsRiHnYgvt~dD~fAHLel~FKF~~Lt----d~V~GVLGQT 304 (357)
.|=.=|+.-+|.||.+ +||.|.|- .+|-|+||+.
T Consensus 72 LP~eLe~e~vHRYg~N----------gFkL~~LP~pr~G~V~GilG~N 109 (591)
T COG1245 72 LPEELEEEVVHRYGVN----------GFKLYRLPTPRPGKVVGILGPN 109 (591)
T ss_pred CchhhcccceeeccCC----------ceEEecCCCCCCCcEEEEEcCC
Confidence 3544466789999954 89999984 4688888874
No 29
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=26.05 E-value=47 Score=32.09 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhc
Q 039053 8 VLVLVAFMLAFISMEA 23 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (357)
|.+|+||||||.+|..
T Consensus 25 mTLLlaFFVlL~smS~ 40 (281)
T PRK09038 25 ITLLFAFFVVMYAISS 40 (281)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3468999999999965
No 30
>PRK06742 flagellar motor protein MotS; Reviewed
Probab=25.78 E-value=48 Score=31.02 Aligned_cols=15 Identities=13% Similarity=0.569 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhhc
Q 039053 9 LVLVAFMLAFISMEA 23 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (357)
-+|++|||+|++|.-
T Consensus 21 TLLL~FFVlL~s~S~ 35 (225)
T PRK06742 21 MLLLTFFVLLVATSK 35 (225)
T ss_pred HHHHHHHHHHHHHhh
Confidence 468999999999963
No 31
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=25.46 E-value=3.2e+02 Score=28.51 Aligned_cols=92 Identities=25% Similarity=0.443 Sum_probs=50.3
Q ss_pred CCCceeeeEEeecCCCCCC--CCceeeeeeeeeeC-CceEEEEee---------eccCCCccCceEEEEECCeEe-eecC
Q 039053 155 DDNLQINAHFIGTRPQGRT--RDFTWVQALAVMFD-THTLVIAAN---------RVSHWNDDVDALTVRWDGQTV-DVRT 221 (357)
Q Consensus 155 D~~LhINAHFIG~R~~g~~--RDfTWIQALgI~F~-~H~l~igA~---------k~~~Wdd~vD~l~v~~dG~~v-~ip~ 221 (357)
|..|.+|. ||...-.-.. .+++-.|.-..-|+ .=+|.|.+. |...| .+..+|++||+++ ..+.
T Consensus 394 ~~~l~v~l-y~~s~~~~~~~~~~v~i~q~T~yP~~~~v~i~v~~~~~~~f~l~lRIP~W---a~~~~i~vNG~~~~~~~~ 469 (520)
T PF07944_consen 394 DDGLYVNL-YIPSELTWPVGGGTVTITQETDYPFEGTVRITVSPDKPVPFTLRLRIPSW---AKGATIRVNGEPVVDTAV 469 (520)
T ss_pred CCEEEEEE-EcceEEEEEECCcEEEEEEecCCCCCCCEEEEEEcCCCccEEEEEEccCC---CCCcEEEECCEeCCCCcC
Confidence 55666665 3433221111 33666666555553 445666333 44589 4458999999995 2211
Q ss_pred CCCCeeeeCCCCceEEEEec-CCCeEEEEEcceEEEEEEEEec
Q 039053 222 DGEAEWRINDEREVVVERTD-DTNSVRVTVSGLLEMDVKIRPI 263 (357)
Q Consensus 222 ~~~a~W~s~~~~~l~V~Rt~-~~N~V~V~l~gv~~i~a~VVPI 263 (357)
...=++|+|+- +...|.|+| .+.+.+++.
T Consensus 470 ---------~~gy~~i~r~W~~gD~v~l~l----pm~~r~~~~ 499 (520)
T PF07944_consen 470 ---------PGGYLTIEREWKDGDVVELRL----PMEVRLEPA 499 (520)
T ss_pred ---------CCCeEEEEeeccCCcEEEEEe----cCeeEEEeC
Confidence 11238899983 344555554 455666664
No 32
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=25.32 E-value=81 Score=22.88 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=15.7
Q ss_pred eeeeCCceEEEEeeec--cCCCccC-ceEEEEECCeEeee
Q 039053 183 AVMFDTHTLVIAANRV--SHWNDDV-DALTVRWDGQTVDV 219 (357)
Q Consensus 183 gI~F~~H~l~igA~k~--~~Wdd~v-D~l~v~~dG~~v~i 219 (357)
.|.|.+|.|.|..++. .-.-.+. ..|.|.++|+++.|
T Consensus 13 ~~~~rg~~l~v~i~~~~v~v~~~~g~~~l~i~v~g~~~~L 52 (54)
T PF03633_consen 13 RLRYRGHWLEVEITHEKVTVTLLSGDAPLTIKVYGEEVTL 52 (54)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEESS--EEEEETT-----
T ss_pred EEEECCEEEEEEEECCEEEEEEccCCccEEEEECCCcccc
Confidence 3455566666554432 2222233 37777777777765
No 33
>PRK00407 hypothetical protein; Provisional
Probab=25.29 E-value=88 Score=27.49 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=46.6
Q ss_pred ceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEECCeEeeecCC-CCCeeeeCCCCceEEEEecCCCeEEE
Q 039053 176 FTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWDGQTVDVRTD-GEAEWRINDEREVVVERTDDTNSVRV 248 (357)
Q Consensus 176 fTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~dG~~v~ip~~-~~a~W~s~~~~~l~V~Rt~~~N~V~V 248 (357)
|.|++.|=.+|+.+.+....-++.. +.+.-+|.-+.-||+++.-.. .+.+=....--+|+|++++..-.+.|
T Consensus 63 ~~~L~ElL~~~~~~~~~~~~~~v~i-~~~~~~l~a~~~Ge~~d~~~H~~~~eVKAvTyh~l~i~~~~~~~~~~v 135 (139)
T PRK00407 63 YRWLEELLYYYDSEGLVFSKFDVKI-DEDDMTLKAKAWGEKFDPEIHERRTVVKAMTYHDMEIEKEDGCWMAQF 135 (139)
T ss_pred HHHHHHHHHHhccceEEEEEEEEEE-cCCceEEEEEEEeeecCcccccCCceEEEeecccEEEEEcCCeEEEEE
Confidence 5688888788888888777766655 555578888889999886432 22222222234788888744444444
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=24.41 E-value=52 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=16.6
Q ss_pred eEEEEECCeEee--ecCCCCCeeeeC
Q 039053 207 ALTVRWDGQTVD--VRTDGEAEWRIN 230 (357)
Q Consensus 207 ~l~v~~dG~~v~--ip~~~~a~W~s~ 230 (357)
.+.+++||.++. +.++....+-++
T Consensus 18 ~v~~~Ing~~~~~LvDTGAs~s~Is~ 43 (124)
T cd05479 18 YINVEINGVPVKAFVDSGAQMTIMSK 43 (124)
T ss_pred EEEEEECCEEEEEEEeCCCceEEeCH
Confidence 467789999987 555555566654
No 35
>COG2946 Putative phage replication protein RstA [DNA replication, recombination, and repair]
Probab=23.76 E-value=1.4e+02 Score=31.16 Aligned_cols=70 Identities=20% Similarity=0.433 Sum_probs=46.7
Q ss_pred ccccCCCCCCCCCcccCCeeeecCCceEEeeccCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEE
Q 039053 113 CKWRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLV 192 (357)
Q Consensus 113 C~~~kp~C~~~Gs~C~DPRFiGGDG~~FYFHGkkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~ 192 (357)
|-.+.|+-+.+|+.=.+-.=+| |.+||+=-|+.+-|+=|-+.+=|.-- -|-+|+
T Consensus 192 ~~~~~pkge~~gt~~~~d~g~g--GkTfyvGsk~s~~y~riYeKgkQLGd-----------~~s~Wv------------- 245 (377)
T COG2946 192 CHNVAPKGECRGTAWLNDDGSG--GKTFYVGSKKSSKYVRIYEKGKQLGD-----------KDSPWV------------- 245 (377)
T ss_pred ccccCCCCCCCCcccccCCCCC--CeEEEecccCcceeEEehhhhhhhcC-----------CCCCcE-------------
Confidence 4334555555555433333223 88999988999999988887766421 445554
Q ss_pred EEeeeccCCCccCceEEEEECCeEeeecCC
Q 039053 193 IAANRVSHWNDDVDALTVRWDGQTVDVRTD 222 (357)
Q Consensus 193 igA~k~~~Wdd~vD~l~v~~dG~~v~ip~~ 222 (357)
|.+|.|.++++.||-+
T Consensus 246 --------------RfEvefk~~d~~iPiD 261 (377)
T COG2946 246 --------------RFEVEFKNKDIVIPID 261 (377)
T ss_pred --------------EEEEEEcCCceeeeHH
Confidence 7899999999888763
No 36
>PRK09041 motB flagellar motor protein MotB; Validated
Probab=23.17 E-value=57 Score=32.50 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 039053 8 VLVLVAFMLAFISMEA 23 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (357)
+..|++|||||.+|..
T Consensus 34 vTLLLaFFVlL~smS~ 49 (317)
T PRK09041 34 MTAMMAFFLVMWLLSS 49 (317)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3468999999999875
No 37
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=23.04 E-value=2.3e+02 Score=23.51 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=40.4
Q ss_pred cCCCceEEeeCCCceeeeEEeecCCCCCCCCceeeeeeeeeeCCceEEEEeeeccCCCccCceEEEEEC
Q 039053 145 AKGGNFAIVSDDNLQINAHFIGTRPQGRTRDFTWVQALAVMFDTHTLVIAANRVSHWNDDVDALTVRWD 213 (357)
Q Consensus 145 kkd~dFclVSD~~LhINAHFIG~R~~g~~RDfTWIQALgI~F~~H~l~igA~k~~~Wdd~vD~l~v~~d 213 (357)
+.+.-+--.-..+++||-..||.-.+| .|.|++ |.-+.|+|.....-...| ....|.|+++
T Consensus 32 R~~~~~g~~~~~~v~vdg~~ig~l~~g---~y~~~~---v~pG~h~i~~~~~~~~~~--~~~~l~~~~~ 92 (117)
T PF11008_consen 32 RPSSFFGSAVKPDVYVDGELIGELKNG---GYFYVE---VPPGKHTISAKSEFSSSP--GANSLDVTVE 92 (117)
T ss_pred EECCccCccccceEEECCEEEEEeCCC---eEEEEE---ECCCcEEEEEecCccCCC--CccEEEEEEc
Confidence 434444447789999999999996664 688886 445678887733222223 5566666665
No 38
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.07 E-value=71 Score=28.96 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=19.4
Q ss_pred CCcccchHHHHHHHHHHHHhhhceeee
Q 039053 1 MDTRISSVLVLVAFMLAFISMEASFVQ 27 (357)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (357)
|...+...|.|+||++|.++--+++++
T Consensus 1 ~~~~~~~~~~~~ala~~~~~s~~a~A~ 27 (143)
T PRK11546 1 MKRNTKIALVLMALSALAMGSGSAFAH 27 (143)
T ss_pred CCcchhHHHHHHHHHHHHHhhhHHHHh
Confidence 334444556688998888888888877
No 39
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=21.74 E-value=76 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=13.1
Q ss_pred EEEEECCeEeeecCC
Q 039053 208 LTVRWDGQTVDVRTD 222 (357)
Q Consensus 208 l~v~~dG~~v~ip~~ 222 (357)
++|++||+++.+|++
T Consensus 1 m~i~vNg~~~~~~~~ 15 (65)
T PRK06944 1 MDIQLNQQTLSLPDG 15 (65)
T ss_pred CEEEECCEEEECCCC
Confidence 479999999999874
No 40
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=21.45 E-value=64 Score=31.79 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhh
Q 039053 10 VLVAFMLAFISME 22 (357)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (357)
+|++|||||++|.
T Consensus 27 LLm~FFVlL~S~S 39 (302)
T PRK08944 27 LLMCFFVLLLSFS 39 (302)
T ss_pred HHHHHHHHHHHHh
Confidence 5899999999985
No 41
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=21.32 E-value=78 Score=23.47 Aligned_cols=15 Identities=7% Similarity=0.435 Sum_probs=13.1
Q ss_pred EEEEECCeEeeecCC
Q 039053 208 LTVRWDGQTVDVRTD 222 (357)
Q Consensus 208 l~v~~dG~~v~ip~~ 222 (357)
++|++||+++.+|++
T Consensus 1 m~i~vNG~~~~~~~~ 15 (66)
T PRK05659 1 MNIQLNGEPRELPDG 15 (66)
T ss_pred CEEEECCeEEEcCCC
Confidence 479999999999874
Done!