BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039054
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 1 METKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERA 60
++T +E+ +N + S ++ +FAG ETTS L + LL+ K+ ER
Sbjct: 246 IDTYLLHMEKEKSNAHSEFSHQNLNLNTLSLFFAGTETTSTTLRYGFLLMLKYPHVAERV 305
Query: 61 RKEFLQALSP 70
+E Q + P
Sbjct: 306 YREIEQVIGP 315
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 36.6 bits (83), Expect = 0.004, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 7 EIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQ 66
E+E+ ++ + + + +FAG ETTS L + +L+L K+ + +E+ +E +
Sbjct: 251 EMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDR 310
Query: 67 ALSPS 71
+ PS
Sbjct: 311 VIGPS 315
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 34 AGQETTSVLLNWTMLLLSKHQDWQER 59
AG ET + L W+ LLLS DWQ+R
Sbjct: 221 AGHETVASALTWSFLLLSHRPDWQKR 246
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 34 AGQETTSVLLNWTMLLLSKHQDWQER 59
AG ET + L W+ LLLS DWQ+R
Sbjct: 221 AGHETVASALTWSFLLLSHRPDWQKR 246
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 6 REIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFL 65
+E E H ++ + +I F FAG ETTS +L++ M L+ H D Q++ ++E
Sbjct: 260 KETESHKALSDLELVAQSII-----FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEID 314
Query: 66 QAL---SPSSY 73
L +P +Y
Sbjct: 315 AVLPNKAPPTY 325
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 6 REIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFL 65
+E E H ++ + +I F FAG ETTS +L++ M L+ H D Q++ ++E
Sbjct: 261 KETESHKALSDLELVAQSII-----FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEID 315
Query: 66 QAL---SPSSY 73
L +P +Y
Sbjct: 316 AVLPNKAPPTY 326
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 6 REIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFL 65
+E E H ++ + +I F FAG ETTS +L++ M L+ H D Q++ ++E
Sbjct: 262 KETESHKALSDLELVAQSII-----FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEID 316
Query: 66 QAL---SPSSY 73
L +P +Y
Sbjct: 317 AVLPNKAPPTY 327
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ +FAG ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLNLFFAGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ +FAG ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLNLFFAGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+FAG ETTS L + LL+ K+ ER +KE Q +
Sbjct: 276 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI 313
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+FAG ETTS L + LL+ K+ ER +KE Q +
Sbjct: 276 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI 313
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+FAG ETTS L + LL+ K+ ER +KE Q +
Sbjct: 276 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI 313
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+FAG ETTS L + LL+ K+ ER +KE Q +
Sbjct: 276 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI 313
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 33.5 bits (75), Expect = 0.032, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 13 NNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++ N +S ++ ++ FAG ET + L+ LLL +H D +ER R+E
Sbjct: 233 DDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQE 283
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 1 METKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERA 60
ME E N++N+ I D+ + AG TTS L W +LL+ H D Q R
Sbjct: 257 MEKAKGNPESSFNDENLRIVVADL-------FSAGMVTTSTTLAWGLLLMILHPDVQRRV 309
Query: 61 RKE 63
++E
Sbjct: 310 QQE 312
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 1 METKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERA 60
ME E N++N+ I D+ + AG TTS L W +LL+ H D Q R
Sbjct: 257 MEKAKGNPESSFNDENLRIVVADL-------FSAGMVTTSTTLAWGLLLMILHPDVQRRV 309
Query: 61 RKE 63
++E
Sbjct: 310 QQE 312
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ Q + G ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLQLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 7 EIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQ 66
E+++ N+ + S ++I + AG ETT+ +L W +L ++ + + Q + +KE
Sbjct: 257 EMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDL 316
Query: 67 ALSPS 71
+ P+
Sbjct: 317 IMGPN 321
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ Q + G ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLQLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 32.3 bits (72), Expect = 0.075, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ Q + G ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLQLFVGGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 7 EIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQ 66
E+++ N+ + S ++I + AG ETT+ +L W +L ++ + + Q + +KE
Sbjct: 257 EMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDL 316
Query: 67 ALSPS 71
+ P+
Sbjct: 317 IMGPN 321
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72
+ G ETT+ L+W + L H + Q R ++E + L P +
Sbjct: 287 LFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGA 328
>pdb|3PSX|A Chain A, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
pdb|3PSX|B Chain B, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
Length = 487
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
HG + G +D + + F AG ETTS LL++T+ L K+ ++A +E + L
Sbjct: 245 HGKDPETGEPLDDENIRYQIVTFLIAGHETTSGLLSFTLYFLVKNPHVLQKAAEEAARVL 304
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+ HG + +V + A Q+T S L W +LL +++ D Q R + E Q +
Sbjct: 267 DSHGGGAR--LDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVV 324
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 33 FAGQETTSVLLNWTMLLL--SKHQDWQERARKE 63
FAGQ T+++ +W+ML L K++ W ++ KE
Sbjct: 267 FAGQHTSTITTSWSMLHLMHPKNKKWLDKLHKE 299
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 33 FAGQETTSVLLNWTMLLL--SKHQDWQERARKE 63
FAGQ T+++ +W+ML L K++ W ++ KE
Sbjct: 261 FAGQHTSTITTSWSMLHLMHPKNKKWLDKLHKE 293
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 33 FAGQETTSVLLNWTMLLL--SKHQDWQERARKE 63
FAGQ T+++ +W+ML L K++ W ++ KE
Sbjct: 276 FAGQHTSTITTSWSMLHLMHPKNKKWLDKLHKE 308
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 31 FYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+ AG ETTS L + LL+ K+ ER +KE Q +
Sbjct: 276 LFAAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVI 313
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 8 IEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E N N +++ + G ET S L + LLL KH + + + +E
Sbjct: 253 MQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEE 308
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 29.3 bits (64), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
HG + G +D + + F AG ETTS LL + + L K+ ++A +E + L
Sbjct: 240 HGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLTFALYFLVKNPHVLQKAAEEAARVL 299
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 19 ISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQA 67
+SF D+ + G +TTS+ L W + ++++ Q+ R E L A
Sbjct: 268 MSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAA 316
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 19 ISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQA 67
+SF D+ + G +TTS+ L W + ++++ Q+ R E L A
Sbjct: 271 MSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAA 319
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 33 FAGQETTSVLLNWTMLLLSKHQD 55
FAG T+S +WT++ L +H+D
Sbjct: 255 FAGHHTSSGTASWTLIELMRHRD 277
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 33 FAGQETTSVLLNWTMLLLSKHQD 55
FAG T+S +WT++ L +H+D
Sbjct: 255 FAGHHTSSGTASWTLIELMRHRD 277
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 33 FAGQETTSVLLNWTMLLLSKHQD 55
FAG T+S +WT++ L +H+D
Sbjct: 255 FAGHHTSSGTASWTLIELMRHRD 277
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 33 FAGQETTSVLLNWTMLLLSKHQD 55
FAG T+S +WT++ L +H+D
Sbjct: 255 FAGHHTSSGTASWTLIELMRHRD 277
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 7 EIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
++E+ +N+ + +++ + AG ETTS L + +LLL KH + + ++E
Sbjct: 252 KMEQEKDNQKSEFNIENLVGTVADLFVAGTETTSTTLRYGLLLLLKHPEVTAKVQEE 308
>pdb|2Z3T|A Chain A, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|B Chain B, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|C Chain C, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3T|D Chain D, Crystal Structure Of Substrate Free Cytochrome P450 Stap
(cyp245a1)
pdb|2Z3U|A Chain A, Crystal Structure Of Chromopyrrolic Acid Bound Cytochrome
P450 Stap (Cyp245a1)
pdb|3A1L|A Chain A, Crystal Structure Of 11,11'-Dichlorochromopyrrolic Acid
Bound Cytochrome P450 Stap (Cyp245a1)
Length = 425
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 19 ISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERAR 61
+S + ++ C AG ETT+ L +L L H+D + R
Sbjct: 239 LSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELR 281
>pdb|3TIK|A Chain A, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|B Chain B, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|C Chain C, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|D Chain D, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
Length = 454
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 263 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 299
>pdb|3P99|A Chain A, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|B Chain B, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|C Chain C, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|D Chain D, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
Length = 453
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 262 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 298
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 276 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 312
>pdb|3GW9|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
Length = 450
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 263 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 299
>pdb|2WV2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Brucei In Complex With Fluconazole
Length = 475
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 276 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 312
>pdb|3G1Q|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
Length = 450
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 33 FAGQETTSVLLNWTMLLLS-----KHQDWQERARKEF 64
FAGQ T+S+ W+ML L KH + + +EF
Sbjct: 264 FAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEF 300
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 240 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 299
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 242 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 301
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 242 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 301
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 242 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 301
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 240 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 299
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 240 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 299
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 240 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 299
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1P0V|A Chain A, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0V|B Chain B, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1P0X|A Chain A, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0X|B Chain B, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1P0W|A Chain A, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0W|B Chain B, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 26.2 bits (56), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 11 HGNNKNVGISFND--VIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
+G + G +D + + F AG ETTS LL++ + L K+ ++A +E + L
Sbjct: 239 NGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL 298
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 16 NVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKE 63
N+ + ++ + AG ETTS L +++LLL KH + R ++E
Sbjct: 258 NLEFTLESLVIAVSDLFGAGTETTSTTLRYSLLLLLKHPEVAARVQEE 305
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 14 NKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEF 64
N NV +S +I + AG +T + ++W+++ L + Q + ++E
Sbjct: 270 NANVQLSDEKIINIVLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEEL 320
>pdb|3AM5|A Chain A, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM5|B Chain B, K316a Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
Length = 329
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 69 SPSSYT 74
S SSY+
Sbjct: 144 SKSSYS 149
>pdb|3AM3|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM3|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan
pdb|3AM4|A Chain A, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
pdb|3AM4|B Chain B, A372m Mutant Of Enoyl-Acp Reductase From Plasmodium
Falciparum (Pfenr) In Complex With Triclosan Variant T1
Length = 329
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 69 SPSSYT 74
S SSY+
Sbjct: 144 SKSSYS 149
>pdb|2OL4|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OL4|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OOS|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP0|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|A Chain A, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
pdb|2OP1|B Chain B, Crystal Structure Of Plasmodium Falciparum Enoyl Acp
Reductase With Triclosan Reductase
Length = 338
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 92 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 151
Query: 69 SPSSYT 74
S SSY+
Sbjct: 152 SKSSYS 157
>pdb|1UH5|A Chain A, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1UH5|B Chain B, Crystal Structure Of Enoyl-Acp Reductase With Triclosan At
2.2angstroms
pdb|1V35|A Chain A, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|1V35|B Chain B, Crystal Structure Of Eoyl-Acp Reductase With Nadh
pdb|3LSY|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LSY|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T0
pdb|3LT0|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT0|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Complex With Triclosan Variant T1
pdb|3LT1|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT1|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T2
pdb|3LT2|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT2|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant T3
pdb|3LT4|A Chain A, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
pdb|3LT4|B Chain B, Enoyl-Acp Reductase From Plasmodium Falciparum (Pfenr) In
Co Triclosan Variant Pb4
Length = 329
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 84 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 143
Query: 69 SPSSYT 74
S SSY+
Sbjct: 144 SKSSYS 149
>pdb|1VRW|A Chain A, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1VRW|B Chain B, Crystal Structure Analysis Of Plasmodium Falciparum Enoyl-
Acyl-Carrier-Protein Reductase With Nadh
pdb|1ZSN|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZSN|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZW1|A Chain A, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZW1|B Chain B, Synthesis, Biological Activity, And X-ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-substituted
Triclosan Derivatives
pdb|1ZXB|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXB|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
pdb|1ZXL|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase. Part 1:4'-Substituted
Triclosan Derivatives
Length = 336
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 83 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 142
Query: 69 SPSSYT 74
S SSY+
Sbjct: 143 SKSSYS 148
>pdb|2FOI|A Chain A, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase.
pdb|2FOI|B Chain B, Synthesis, Biological Activity, And X-Ray Crystal
Structural Analysis Of Diaryl Ether Inhibitors Of
Malarial Enoyl Acp Reductase
Length = 269
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 83 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 142
Query: 69 SPSSYT 74
S SSY+
Sbjct: 143 SKSSYS 148
>pdb|2O2Y|A Chain A, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|B Chain B, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|C Chain C, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
pdb|2O2Y|D Chain D, The Crystal Structure Of P. Falciparum Enoyl Acyl Carrier
Protein Reductase
Length = 349
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 9 EEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQAL 68
EE NNK + N IE ++L++ +D +RK +L AL
Sbjct: 96 EETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDAL 155
Query: 69 SPSSYT 74
S SSY+
Sbjct: 156 SKSSYS 161
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 23 DVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQA 67
DV + G TTS+ L W + +++ + QE R+E L A
Sbjct: 276 DVKANITEMLAGGVNTTSMTLQWHLYEMARSLNVQEMLREEVLNA 320
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 3 TKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERAR 61
T R EE+ + +G V+ +C + AGQE ++++N L HQ + AR
Sbjct: 5 TCTRFTEEYQLFEELGKGAFSVVRRCVKV-LAGQEYAAMIINTKKLSARDHQKLEREAR 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,408,511
Number of Sequences: 62578
Number of extensions: 75548
Number of successful extensions: 276
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 82
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)