Query 039054
Match_columns 82
No_of_seqs 104 out of 1669
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 99.6 3.3E-15 7.1E-20 94.4 8.2 76 1-79 267-343 (489)
2 KOG0158 Cytochrome P450 CYP3/C 99.5 5E-13 1.1E-17 84.6 8.8 62 18-79 289-351 (499)
3 PLN02971 tryptophan N-hydroxyl 99.4 8.3E-13 1.8E-17 84.3 8.5 56 18-73 322-377 (543)
4 PLN02290 cytokinin trans-hydro 99.4 7.9E-12 1.7E-16 79.3 9.2 61 18-78 311-371 (516)
5 PLN03195 fatty acid omega-hydr 99.4 9.4E-12 2E-16 79.0 9.0 53 17-69 286-338 (516)
6 PLN00168 Cytochrome P450; Prov 99.3 1.3E-11 2.9E-16 78.5 9.3 54 17-70 300-353 (519)
7 PLN02394 trans-cinnamate 4-mon 99.3 1.4E-11 2.9E-16 78.0 9.3 55 18-72 288-342 (503)
8 PLN03234 cytochrome P450 83B1; 99.3 1.5E-11 3.3E-16 77.7 8.9 55 18-72 283-337 (499)
9 KOG0157 Cytochrome P450 CYP4/C 99.3 1.3E-11 2.9E-16 78.3 8.3 57 17-73 285-341 (497)
10 PLN02183 ferulate 5-hydroxylas 99.3 2.6E-11 5.7E-16 77.1 9.2 55 18-72 299-353 (516)
11 PLN02966 cytochrome P450 83A1 99.3 2.4E-11 5.2E-16 77.0 8.7 54 17-70 283-336 (502)
12 PLN02655 ent-kaurene oxidase 99.3 3E-11 6.4E-16 76.0 8.9 59 18-76 257-315 (466)
13 PLN02500 cytochrome P450 90B1 99.3 3.5E-11 7.7E-16 76.0 9.0 52 18-69 274-325 (490)
14 PLN03018 homomethionine N-hydr 99.3 4E-11 8.7E-16 76.7 9.3 55 18-72 309-363 (534)
15 PLN03112 cytochrome P450 famil 99.3 3.6E-11 7.8E-16 76.3 8.7 55 18-72 291-345 (514)
16 PLN02738 carotene beta-ring hy 99.3 3.7E-11 8E-16 78.2 8.9 63 18-80 386-448 (633)
17 PLN02774 brassinosteroid-6-oxi 99.3 8E-11 1.7E-15 74.0 9.1 66 4-70 246-311 (463)
18 PLN02169 fatty acid (omega-1)- 99.3 5.6E-11 1.2E-15 75.5 8.5 52 18-69 296-347 (500)
19 PLN02302 ent-kaurenoic acid ox 99.3 7.5E-11 1.6E-15 74.3 9.0 66 5-70 269-334 (490)
20 PLN02687 flavonoid 3'-monooxyg 99.2 7.5E-11 1.6E-15 75.0 8.6 56 17-72 291-346 (517)
21 PF00067 p450: Cytochrome P450 99.2 1.2E-10 2.6E-15 71.6 8.5 69 4-72 241-311 (463)
22 PLN00110 flavonoid 3',5'-hydro 99.2 9.7E-11 2.1E-15 74.4 8.2 57 16-72 282-338 (504)
23 PLN02936 epsilon-ring hydroxyl 99.2 1.7E-10 3.7E-15 73.1 9.1 56 18-73 273-328 (489)
24 PTZ00404 cytochrome P450; Prov 99.2 2.9E-10 6.3E-15 71.7 8.6 49 23-71 283-331 (482)
25 PLN02426 cytochrome P450, fami 99.2 2.8E-10 6E-15 72.4 8.6 52 20-71 290-341 (502)
26 KOG0159 Cytochrome P450 CYP11/ 99.2 3.9E-10 8.4E-15 71.4 8.2 53 19-71 312-364 (519)
27 KOG0684 Cytochrome P450 [Secon 99.1 4.9E-10 1.1E-14 70.1 7.6 62 12-73 262-323 (486)
28 PLN03141 3-epi-6-deoxocathaste 99.1 1.1E-09 2.3E-14 68.8 8.9 53 17-69 245-297 (452)
29 COG2124 CypX Cytochrome P450 [ 99.1 5.3E-10 1.2E-14 69.7 7.0 63 4-66 217-279 (411)
30 PLN02196 abscisic acid 8'-hydr 99.0 2.1E-09 4.6E-14 67.7 8.0 54 17-70 258-311 (463)
31 PLN02987 Cytochrome P450, fami 99.0 6.3E-09 1.4E-13 65.9 8.8 52 18-69 262-313 (472)
32 PLN02648 allene oxide synthase 98.6 4.9E-07 1.1E-11 57.7 7.9 52 18-69 266-319 (480)
33 PF05952 ComX: Bacillus compet 75.4 4.5 9.8E-05 18.8 2.3 18 45-62 4-21 (57)
34 PF12554 MOZART1: Mitotic-spin 74.4 6.7 0.00015 17.5 4.5 42 23-64 6-47 (48)
35 PF08285 DPM3: Dolichol-phosph 64.6 15 0.00032 18.7 3.0 28 41-68 54-81 (91)
36 PF14824 Sirohm_synth_M: Siroh 56.2 14 0.00031 14.8 2.2 15 53-67 15-29 (30)
37 cd07922 CarBa CarBa is the A s 55.0 18 0.00038 18.1 2.3 32 46-77 9-40 (81)
38 PF03221 HTH_Tnp_Tc5: Tc5 tran 53.0 13 0.00028 16.9 1.6 52 2-53 5-60 (66)
39 PRK07034 hypothetical protein; 48.2 51 0.0011 22.5 4.2 59 2-70 234-292 (536)
40 PF13808 DDE_Tnp_1_assoc: DDE_ 46.2 39 0.00085 16.9 3.2 44 3-46 3-46 (90)
41 KOG3348 BolA (bacterial stress 41.8 34 0.00074 17.2 2.1 20 49-68 48-67 (85)
42 KOG4634 Mitochondrial F1F0-ATP 41.2 28 0.00061 18.1 1.8 15 53-67 58-72 (105)
43 PRK14693 hypothetical protein; 38.9 82 0.0018 21.7 4.0 37 2-38 213-249 (552)
44 COG0851 MinE Septum formation 38.4 29 0.00063 17.6 1.6 18 53-70 35-52 (88)
45 PF00714 IFN-gamma: Interferon 38.4 73 0.0016 17.7 3.6 23 49-71 107-129 (138)
46 cd07357 HN_L-whirlin_R2_like S 37.4 58 0.0013 16.3 5.2 55 19-75 16-72 (81)
47 PRK13990 cell division topolog 36.7 46 0.001 17.0 2.2 19 53-71 41-59 (90)
48 KOG0859 Synaptobrevin/VAMP-lik 35.2 93 0.002 18.5 3.4 30 38-67 106-137 (217)
49 PF10167 NEP: Uncharacterised 33.3 84 0.0018 16.9 4.2 28 41-68 15-43 (118)
50 PF07849 DUF1641: Protein of u 32.0 51 0.0011 14.1 2.5 17 45-61 14-30 (42)
51 TIGR03349 IV_VI_DotU type IV / 31.6 96 0.0021 17.8 3.2 34 3-36 86-119 (183)
52 PRK13989 cell division topolog 31.2 65 0.0014 16.2 2.2 19 53-71 36-54 (84)
53 PRK13991 cell division topolog 30.5 73 0.0016 16.1 2.3 18 53-70 35-52 (87)
54 smart00674 CENPB Putative DNA- 30.0 65 0.0014 14.6 2.6 53 2-54 8-61 (66)
55 PF11998 DUF3493: Protein of u 29.9 66 0.0014 15.8 2.0 14 53-66 2-15 (75)
56 PF09850 DUF2077: Uncharacteri 27.2 1.3E+02 0.0028 17.2 3.4 36 2-37 97-132 (206)
57 KOG4189 Uncharacterized conser 26.9 1.5E+02 0.0032 17.7 6.7 44 24-67 133-178 (209)
58 PF10883 DUF2681: Protein of u 26.9 99 0.0021 15.7 4.8 28 40-67 15-42 (87)
59 PF07577 DUF1547: Domain of Un 26.9 40 0.00087 15.7 0.9 16 56-71 2-17 (58)
60 KOG1792 Reticulon [Intracellul 26.8 1.5E+02 0.0033 17.9 4.2 28 41-68 173-200 (230)
61 PRK03636 hypothetical protein; 26.3 1.4E+02 0.0031 17.3 3.2 34 28-61 11-44 (179)
62 COG3138 AstA Arginine/ornithin 26.2 56 0.0012 20.6 1.7 73 3-75 158-232 (336)
63 PRK13987 cell division topolog 25.5 92 0.002 15.9 2.2 18 53-70 33-50 (91)
64 PLN03044 GTP cyclohydrolase I; 25.4 1.5E+02 0.0033 17.3 3.7 27 42-68 103-129 (188)
65 PF12627 PolyA_pol_RNAbd: Prob 25.0 67 0.0015 14.5 1.6 16 57-72 24-39 (64)
66 PRK07033 hypothetical protein; 24.6 1.6E+02 0.0034 19.5 3.5 37 2-38 143-179 (427)
67 cd07347 harmonin_N_like N-term 23.5 1.1E+02 0.0024 15.1 4.9 51 19-72 16-68 (78)
68 PRK03057 hypothetical protein; 22.9 1.7E+02 0.0037 17.0 3.3 34 28-61 9-42 (180)
69 cd00642 GTP_cyclohydro1 GTP cy 22.7 1.7E+02 0.0037 17.0 3.6 27 42-68 102-128 (185)
70 PRK13988 cell division topolog 22.3 1.1E+02 0.0025 15.8 2.2 19 52-70 36-54 (97)
71 PF10454 DUF2458: Protein of u 22.2 1.6E+02 0.0035 16.5 4.2 22 40-61 9-30 (150)
72 PTZ00257 Glycoprotein GP63 (le 22.2 3E+02 0.0064 19.5 5.9 60 22-82 12-71 (622)
73 KOG1949 Uncharacterized conser 21.6 3.1E+02 0.0068 20.2 4.5 12 3-14 110-121 (1005)
74 PF10777 YlaC: Inner membrane 21.0 74 0.0016 18.0 1.4 27 46-72 114-140 (155)
75 PRK08126 hypothetical protein; 20.8 2.1E+02 0.0046 19.0 3.6 37 2-38 158-194 (432)
76 KOG3451 Uncharacterized conser 20.6 96 0.0021 15.0 1.5 23 49-71 42-64 (71)
77 PF10691 DUF2497: Protein of u 20.4 1.3E+02 0.0028 14.7 2.1 16 54-69 56-72 (73)
78 PRK00296 minE cell division to 20.4 1.3E+02 0.0029 15.1 2.1 19 53-71 35-53 (86)
79 KOG0075 GTP-binding ADP-ribosy 20.3 44 0.00096 19.1 0.4 31 52-82 99-129 (186)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=3.3e-15 Score=94.37 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=64.5
Q ss_pred ChhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC-CCcchhh
Q 039054 1 METKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS-YTGLAVG 79 (82)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~-~~~~~~~ 79 (82)
+|++|+.+.+...+. +++++++..+..+++||.+|++.++.|++.++.+||++++|+|+||++++|..+ ++..+..
T Consensus 267 vD~lL~~~~~~~~~~---~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~ 343 (489)
T KOG0156|consen 267 VDALLKLMKEEKAEG---LTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLP 343 (489)
T ss_pred HHHHHHhhcccccCC---CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhc
Confidence 366666666544332 999999999999999999999999999999999999999999999999999887 5555443
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=5e-13 Score=84.55 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC-CCcchhh
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS-YTGLAVG 79 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~-~~~~~~~ 79 (82)
.++.+++++++..+++||.+|+++++++++|.|++||++|+|+|+||+++..+.. .+...+.
T Consensus 289 ~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~~~~~ltyd~l~ 351 (499)
T KOG0158|consen 289 ALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLEEKEGLTYDSLS 351 (499)
T ss_pred ccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhcccCCCCHHHHh
Confidence 5999999999999999999999999999999999999999999999999977665 4444443
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=99.45 E-value=8.3e-13 Score=84.35 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSY 73 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~ 73 (82)
.++++++...+..+++||++|++.++.|++++|+.||++|+|+++||+++++..+.
T Consensus 322 ~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v~g~~~~ 377 (543)
T PLN02971 322 LLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGKERF 377 (543)
T ss_pred CCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCC
Confidence 48999999999999999999999999999999999999999999999999986543
No 4
>PLN02290 cytokinin trans-hydroxylase
Probab=99.37 E-value=7.9e-12 Score=79.31 Aligned_cols=61 Identities=31% Similarity=0.715 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCcchh
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSYTGLAV 78 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~ 78 (82)
.+++.++.+.+..+++||++|++.++.|+++++++||++|+|+++|++++++...++..++
T Consensus 311 ~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~~l 371 (516)
T PLN02290 311 NLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETPSVDHL 371 (516)
T ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 4788899999999999999999999999999999999999999999999998654443333
No 5
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.36 E-value=9.4e-12 Score=79.02 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALS 69 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~ 69 (82)
..++++++...+..+++||++|++.++.|++++|+.||++++|+++|++++++
T Consensus 286 ~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~ 338 (516)
T PLN03195 286 SNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEK 338 (516)
T ss_pred CCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh
Confidence 45899999999999999999999999999999999999999999999999875
No 6
>PLN00168 Cytochrome P450; Provisional
Probab=99.35 E-value=1.3e-11 Score=78.46 Aligned_cols=54 Identities=26% Similarity=0.454 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
..++++++...+..+++||++|++.++.|++++++.||++++|+++||+++++.
T Consensus 300 ~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~ 353 (519)
T PLN00168 300 RALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGD 353 (519)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 458999999999999999999999999999999999999999999999999974
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.35 E-value=1.4e-11 Score=78.02 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
.++++++...+..+++||++|++.+++|+++++++||++++|+++||+++++..+
T Consensus 288 ~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~ 342 (503)
T PLN02394 288 EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGN 342 (503)
T ss_pred CCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCC
Confidence 4788999999999999999999999999999999999999999999999988543
No 8
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.33 E-value=1.5e-11 Score=77.70 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
.++++++...+..+++||++|++.++.|+++++++||++++|+++|+++++++.+
T Consensus 283 ~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~ 337 (499)
T PLN03234 283 KFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKG 337 (499)
T ss_pred CCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999999999999999999999999987644
No 9
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.33 E-value=1.3e-11 Score=78.34 Aligned_cols=57 Identities=35% Similarity=0.560 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSY 73 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~ 73 (82)
..+++.++...+.++++||++|+++.++|+++.|+.||++++|+++|++++++....
T Consensus 285 ~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~ 341 (497)
T KOG0157|consen 285 KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDD 341 (497)
T ss_pred CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCC
Confidence 568999999999999999999999999999999999999999999999999985443
No 10
>PLN02183 ferulate 5-hydroxylase
Probab=99.32 E-value=2.6e-11 Score=77.09 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
.++++++...+..+++||++|++.++.|+++++++||++++|+++|++++++..+
T Consensus 299 ~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~~ 353 (516)
T PLN02183 299 KLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLNR 353 (516)
T ss_pred CCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCC
Confidence 5899999999999999999999999999999999999999999999999998443
No 11
>PLN02966 cytochrome P450 83A1
Probab=99.31 E-value=2.4e-11 Score=77.01 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
..++++++...+..+++||++|++.++.|++++|++||++++|+++|+++++++
T Consensus 283 ~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~ 336 (502)
T PLN02966 283 SEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKE 336 (502)
T ss_pred CCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999999999999999999864
No 12
>PLN02655 ent-kaurene oxidase
Probab=99.30 E-value=3e-11 Score=76.01 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCcc
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSYTGL 76 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~~ 76 (82)
.+++.++...+..+++||++|++.+++|++++++.||++++|+++||+.+++...++..
T Consensus 257 ~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~ 315 (466)
T PLN02655 257 HLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDERVTEE 315 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCCCCHH
Confidence 47899999999999999999999999999999999999999999999999986554333
No 13
>PLN02500 cytochrome P450 90B1
Probab=99.30 E-value=3.5e-11 Score=76.01 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALS 69 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~ 69 (82)
.++++++...+..+++||++|++.+++|++++++.||++|+|+++|++++++
T Consensus 274 ~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~ 325 (490)
T PLN02500 274 NLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIAR 325 (490)
T ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999864
No 14
>PLN03018 homomethionine N-hydroxylase
Probab=99.30 E-value=4e-11 Score=76.71 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
.++++++...+..+++||++|++.++.|.+++|+.||++++|+++||+.+++..+
T Consensus 309 ~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~ 363 (534)
T PLN03018 309 LVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGKDR 363 (534)
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCC
Confidence 4899999999999999999999999999999999999999999999999987544
No 15
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.29 E-value=3.6e-11 Score=76.31 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
.+++.++...+..+++||++|++++++|.++++++||++++|+++||++++++.+
T Consensus 291 ~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~ 345 (514)
T PLN03112 291 HMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNR 345 (514)
T ss_pred CCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCC
Confidence 4889999999999999999999999999999999999999999999999988643
No 16
>PLN02738 carotene beta-ring hydroxylase
Probab=99.29 E-value=3.7e-11 Score=78.23 Aligned_cols=63 Identities=24% Similarity=0.294 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCcchhhh
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSYTGLAVGI 80 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~ 80 (82)
.++++++...+..+++||++|++.+++|+++++++||++++|+++|++++++...++..+++.
T Consensus 386 ~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~~~~t~edL~k 448 (633)
T PLN02738 386 DVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGDRFPTIEDMKK 448 (633)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCCCCHHHHcc
Confidence 478999999999999999999999999999999999999999999999999854344444443
No 17
>PLN02774 brassinosteroid-6-oxidase
Probab=99.26 E-value=8e-11 Score=74.04 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 4 KFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
++..+.... ..+..++++++...+..+++||++|++.+++|++++++.||++++|+++|++++++.
T Consensus 246 ~l~~ll~~~-~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~ 311 (463)
T PLN02774 246 MLGYLMRKE-GNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRER 311 (463)
T ss_pred HHHHHHhCc-cCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc
Confidence 444444422 223358999999999999999999999999999999999999999999999999863
No 18
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.26 E-value=5.6e-11 Score=75.48 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALS 69 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~ 69 (82)
.++++++.+.+..+++||++|++++++|++++|+.||++|+|+++||++++.
T Consensus 296 ~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~~ 347 (500)
T PLN02169 296 PKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKFD 347 (500)
T ss_pred CCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhCC
Confidence 4678889999999999999999999999999999999999999999998863
No 19
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.26 E-value=7.5e-11 Score=74.28 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 5 FREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
+..+.+...+.+..++++++...+..+++||++|++.++.|.++++..||++++|+++|++++.+.
T Consensus 269 l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~ 334 (490)
T PLN02302 269 LDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKK 334 (490)
T ss_pred HHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 334433322334458999999999999999999999999999999999999999999999999864
No 20
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.25 E-value=7.5e-11 Score=75.03 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
..++++++...+..+++||++|++.++.|++++++.||++++|+++|++++++..+
T Consensus 291 ~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~ 346 (517)
T PLN02687 291 GRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDR 346 (517)
T ss_pred cCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCC
Confidence 45899999999999999999999999999999999999999999999999987543
No 21
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.23 E-value=1.2e-10 Score=71.58 Aligned_cols=69 Identities=25% Similarity=0.435 Sum_probs=58.2
Q ss_pred HHHHHHhhc-CCCC-CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 4 KFREIEEHG-NNKN-VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 4 ~~~~~~~~~-~~~~-~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
++..+.... ...+ ..++++++...+..+++||++|++.+++|++++|++||++++++++|++++.+...
T Consensus 241 ~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~ 311 (463)
T PF00067_consen 241 LLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGR 311 (463)
T ss_dssp HHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 444555543 2333 37999999999999999999999999999999999999999999999999996544
No 22
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.23 E-value=9.7e-11 Score=74.43 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 16 NVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 16 ~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
+..++++++...+..+++||++|++.++.|.+++++.||++++|+++|++++++..+
T Consensus 282 ~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~ 338 (504)
T PLN00110 282 GEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNR 338 (504)
T ss_pred CCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence 345899999999999999999999999999999999999999999999999987543
No 23
>PLN02936 epsilon-ring hydroxylase
Probab=99.22 E-value=1.7e-10 Score=73.05 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSY 73 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~ 73 (82)
.++.+++...+..+++||++|++.+++|+++++++||++++++++|++.+++...+
T Consensus 273 ~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~~~~~~ 328 (489)
T PLN02936 273 EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQGRPP 328 (489)
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCC
Confidence 47889999999999999999999999999999999999999999999999875433
No 24
>PTZ00404 cytochrome P450; Provisional
Probab=99.18 E-value=2.9e-10 Score=71.73 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 039054 23 DVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPS 71 (82)
Q Consensus 23 ~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~ 71 (82)
++.+.+..+++||++|++.+++|.+++|++||++++|+++|+++++++.
T Consensus 283 ~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~ 331 (482)
T PTZ00404 283 SILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGR 331 (482)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCC
Confidence 4788999999999999999999999999999999999999999998854
No 25
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.18 E-value=2.8e-10 Score=72.44 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 039054 20 SFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPS 71 (82)
Q Consensus 20 ~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~ 71 (82)
+++++...+..+++||++|++.+++|.++++++||++++|+++|++++++..
T Consensus 290 ~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~ 341 (502)
T PLN02426 290 DDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPN 341 (502)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCC
Confidence 5678999999999999999999999999999999999999999999998753
No 26
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=3.9e-10 Score=71.44 Aligned_cols=53 Identities=30% Similarity=0.450 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 039054 19 ISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPS 71 (82)
Q Consensus 19 ~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~ 71 (82)
++..+++..+..++.||.+|+++++.|.+|.|++||++|+++++|+.++..+.
T Consensus 312 l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~ 364 (519)
T KOG0159|consen 312 LSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSG 364 (519)
T ss_pred CCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCc
Confidence 67889999999999999999999999999999999999999999999998863
No 27
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=4.9e-10 Score=70.09 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=57.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCC
Q 039054 12 GNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSY 73 (82)
Q Consensus 12 ~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~ 73 (82)
..+++.+.++.++....+.+++||+++++.+..|++.++.+||++++.+++|+++++|....
T Consensus 262 ~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~ 323 (486)
T KOG0684|consen 262 KYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKE 323 (486)
T ss_pred HhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCC
Confidence 44677889999999999999999999999999999999999999999999999999986654
No 28
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.11 E-value=1.1e-09 Score=68.79 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALS 69 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~ 69 (82)
..+++.++...+..+++||++|++.++.|++++++.||++++++++|++++++
T Consensus 245 ~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~ 297 (452)
T PLN03141 245 DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKR 297 (452)
T ss_pred CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999999999999999999999998864
No 29
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.10 E-value=5.3e-10 Score=69.70 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039054 4 KFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQ 66 (82)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~ 66 (82)
.+.-+.....+.+..+++.++.+.+..+++||++|++++++|+++.|+.||++++++++|.+.
T Consensus 217 lls~l~~a~~~~~~~lsd~Ei~~~~~~ll~AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~ 279 (411)
T COG2124 217 LLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEPDR 279 (411)
T ss_pred HHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch
Confidence 344444444444447999999999999999999999999999999999999999998887663
No 30
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.04 E-value=2.1e-09 Score=67.74 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 17 VGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 17 ~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
..++++++...+..+++||++|++.++.|+++++++||++++++++|++.+.+.
T Consensus 258 ~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~ 311 (463)
T PLN02196 258 EGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKD 311 (463)
T ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999999999999999998763
No 31
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=98.99 E-value=6.3e-09 Score=65.92 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 039054 18 GISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALS 69 (82)
Q Consensus 18 ~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~ 69 (82)
.++++++...+..+++||++|++.++.|+++.+..||++++++++|++++.+
T Consensus 262 ~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~ 313 (472)
T PLN02987 262 GFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRA 313 (472)
T ss_pred CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHc
Confidence 4889999999999999999999999999999999999999999999999875
No 32
>PLN02648 allene oxide synthase
Probab=98.59 E-value=4.9e-07 Score=57.70 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHH-HhHhchhhHHHHHHHHHHHHhhCHH-HHHHHHHHHHHhcC
Q 039054 18 GISFNDVIEKCKQ-FYFAGQETTSVLLNWTMLLLSKHQD-WQERARKEFLQALS 69 (82)
Q Consensus 18 ~~~~~~i~~~~~~-l~~aG~~~~~~~l~~~~~~l~~~p~-~~~~~~~Ei~~~~~ 69 (82)
.++++++...++. +.++++++++..+.|++++|..||+ +++++++|++.+++
T Consensus 266 ~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~~~~ 319 (480)
T PLN02648 266 GISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRSAVK 319 (480)
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 3899999888764 3356677777889999999999995 99999999999986
No 33
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=75.40 E-value=4.5 Score=18.79 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=15.1
Q ss_pred HHHHHHhhCHHHHHHHHH
Q 039054 45 WTMLLLSKHQDWQERARK 62 (82)
Q Consensus 45 ~~~~~l~~~p~~~~~~~~ 62 (82)
-.+.+|..||++.+++.+
T Consensus 4 ~iV~YLv~nPevl~kl~~ 21 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKE 21 (57)
T ss_pred HHHHHHHHChHHHHHHHc
Confidence 356789999999999885
No 34
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=74.45 E-value=6.7 Score=17.55 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039054 23 DVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEF 64 (82)
Q Consensus 23 ~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei 64 (82)
++...+..++-.|.+..+..+...+...-.+|+....+-+|+
T Consensus 6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 456667777777888877777777777778898888777765
No 35
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=64.57 E-value=15 Score=18.74 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 039054 41 VLLNWTMLLLSKHQDWQERARKEFLQAL 68 (82)
Q Consensus 41 ~~l~~~~~~l~~~p~~~~~~~~Ei~~~~ 68 (82)
..+.|.+..+...|+..+.+++||++..
T Consensus 54 ~~lgy~v~tFnDcpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 54 FTLGYGVATFNDCPEAAKELQKEIKEAK 81 (91)
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 3455666677788999999999998874
No 36
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=56.18 E-value=14 Score=14.77 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHh
Q 039054 53 HQDWQERARKEFLQA 67 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~ 67 (82)
-|...+++++||++.
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 467778888888764
No 37
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=54.99 E-value=18 Score=18.08 Aligned_cols=32 Identities=16% Similarity=0.039 Sum_probs=23.2
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhcCCCCCCcch
Q 039054 46 TMLLLSKHQDWQERARKEFLQALSPSSYTGLA 77 (82)
Q Consensus 46 ~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~ 77 (82)
.+..|..+|...++.+++-+.++.....+.+.
T Consensus 9 li~~L~~dp~~rerF~~DPea~~~~~gLt~eE 40 (81)
T cd07922 9 LIQELFKDPGLIERFQDDPSAVFEEYGLTPAE 40 (81)
T ss_pred HHHHHhcCHHHHHHHHHCHHHHHHHcCCCHHH
Confidence 45568888988888888877777666655444
No 38
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=53.04 E-value=13 Score=16.89 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=27.9
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHh----HhchhhHHHHHHHHHHHHhhC
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFY----FAGQETTSVLLNWTMLLLSKH 53 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~----~aG~~~~~~~l~~~~~~l~~~ 53 (82)
|..|.++.......+.+++...|......+. ..+.......-.|.-...-+|
T Consensus 5 E~~L~~wi~~~~~~g~~vt~~~i~~~A~~i~~~~~~~~~~~~~~s~~W~~~F~~Rh 60 (66)
T PF03221_consen 5 EKALVEWIKRMRRKGFPVTREMIREKAKEIAELAKSPGPPEFKASKGWLDRFKKRH 60 (66)
T ss_dssp HHHHHHHHHHHCGCT---SCHHHHHHHHHHHH-SCCCT-TT-S--CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccccCcCCcccHHHHHHHHHc
Confidence 5566777777777788888888877777763 233333334444555444444
No 39
>PRK07034 hypothetical protein; Provisional
Probab=48.20 E-value=51 Score=22.50 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=36.9
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSP 70 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~ 70 (82)
+.||..+.....+.....+..++...|+.+-|-|..... ..-+...+++++.+.+++.+
T Consensus 234 EkFF~lL~rl~~~P~~~~dLLEl~y~CLsLGFeGrYRv~----------~~G~~~L~~iR~~L~~~Ir~ 292 (536)
T PRK07034 234 EDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMI----------EHGAVLLMDLRSRLHTQLYG 292 (536)
T ss_pred HHHHHHHHHHHhCccccccHHHHHHHHHhCCCCeecccC----------CCCHHHHHHHHHHHHHHHHH
Confidence 457777777766666678888888888888777764322 12234445555555555443
No 40
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=46.21 E-value=39 Score=16.87 Aligned_cols=44 Identities=11% Similarity=0.296 Sum_probs=28.4
Q ss_pred hHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHHHHH
Q 039054 3 TKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLLNWT 46 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l~~~ 46 (82)
++|..+.+.....+...+...+...+..-.++|.++......|.
T Consensus 3 ~~f~~i~DpR~~~~~ry~L~~iL~i~~~a~l~G~~~~~~i~~~~ 46 (90)
T PF13808_consen 3 EHFSQIPDPRSRRGRRYPLADILLIALCAVLCGADSWREIAEWA 46 (90)
T ss_pred HHhhCCCCCcccCCceecHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 44555555555555566777777776666678887777665553
No 41
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=41.75 E-value=34 Score=17.24 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.3
Q ss_pred HHhhCHHHHHHHHHHHHHhc
Q 039054 49 LLSKHQDWQERARKEFLQAL 68 (82)
Q Consensus 49 ~l~~~p~~~~~~~~Ei~~~~ 68 (82)
.+.+|.-+...+++||+.+=
T Consensus 48 ~L~rHRlVN~~L~Eeik~iH 67 (85)
T KOG3348|consen 48 LLARHRLVNSILAEEIKEIH 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46778888999999988873
No 42
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=41.24 E-value=28 Score=18.07 Aligned_cols=15 Identities=7% Similarity=0.477 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHh
Q 039054 53 HQDWQERARKEFLQA 67 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~ 67 (82)
+|++++.+++|+.++
T Consensus 58 ~pe~e~eLk~el~rl 72 (105)
T KOG4634|consen 58 DPEYEQELKEELFRL 72 (105)
T ss_pred CHHHHHHHHHHHHHH
Confidence 467777777777766
No 43
>PRK14693 hypothetical protein; Provisional
Probab=38.89 E-value=82 Score=21.69 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=26.6
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhh
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQET 38 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~ 38 (82)
|.||.-+.+...+........++...|+.+-|-|...
T Consensus 213 EkfF~lL~rl~~~P~~~~dLLEl~y~cLsLGFeGRYR 249 (552)
T PRK14693 213 EDAFADLSRWMKTEPPPIPLLSFYELILSLGWQGRYR 249 (552)
T ss_pred HHHHHHHHHHHhCcCcCccHHHHHHHHHhCCCCCccc
Confidence 4567777776666666778888888888877776644
No 44
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=38.39 E-value=29 Score=17.63 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 039054 53 HQDWQERARKEFLQALSP 70 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~ 70 (82)
.|+....+|+||..|+..
T Consensus 35 ~pd~l~~Lr~eIl~VI~K 52 (88)
T COG0851 35 QPDYLEQLRKEILEVISK 52 (88)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 488999999999999753
No 45
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=38.38 E-value=73 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHhhCHHHHHHHHHHHHHhcCCC
Q 039054 49 LLSKHQDWQERARKEFLQALSPS 71 (82)
Q Consensus 49 ~l~~~p~~~~~~~~Ei~~~~~~~ 71 (82)
.-..+|.+|.|+-.|+-.|+..-
T Consensus 107 i~vnD~~vQrKAi~EL~~V~~~L 129 (138)
T PF00714_consen 107 IQVNDLQVQRKAINELFKVMQKL 129 (138)
T ss_dssp S-TTCHHHHHHHHHCHHHHHHCC
T ss_pred ccCcCHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999887643
No 46
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=37.45 E-value=58 Score=16.29 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHh--HhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCc
Q 039054 19 ISFNDVIEKCKQFY--FAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSYTG 75 (82)
Q Consensus 19 ~~~~~i~~~~~~l~--~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~ 75 (82)
+++.+......-+- ..|+ -+.-.+..+++.+...|+-. .+-.||+.++.+...+-
T Consensus 16 L~e~E~~tm~yyl~eY~~~~-~tVealV~aL~elLnt~~K~-sLLsEiR~lI~p~Dl~R 72 (81)
T cd07357 16 LSENERATLSYYLDEYRSGH-ISVDALVMALFELLNTHEKF-SLLSEIRELISPQDLDR 72 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHhccHHHH-HHHHHHHHhcChhhhhH
Confidence 56666554433332 2233 23456666777788877765 56679999988665443
No 47
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=36.66 E-value=46 Score=16.99 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 039054 53 HQDWQERARKEFLQALSPS 71 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~~ 71 (82)
.|+....+++||..|+...
T Consensus 41 ~pd~L~~lk~eIl~VI~KY 59 (90)
T PRK13990 41 SSHLLAELKDEIIEVVKKY 59 (90)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4688999999999998643
No 48
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.18 E-value=93 Score=18.54 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhhCHHH--HHHHHHHHHHh
Q 039054 38 TTSVLLNWTMLLLSKHQDW--QERARKEFLQA 67 (82)
Q Consensus 38 ~~~~~l~~~~~~l~~~p~~--~~~~~~Ei~~~ 67 (82)
-.+..+..-+.++..||++ ..|++.++.++
T Consensus 106 EFs~vL~qqm~y~s~~p~id~lskvkaqv~ev 137 (217)
T KOG0859|consen 106 EFSSVLKQQMQYCSEHPEISKLAKVKAQVTEV 137 (217)
T ss_pred HHHHHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 3445667777889999974 35666554444
No 49
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=33.27 E-value=84 Score=16.89 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhCHHH-HHHHHHHHHHhc
Q 039054 41 VLLNWTMLLLSKHQDW-QERARKEFLQAL 68 (82)
Q Consensus 41 ~~l~~~~~~l~~~p~~-~~~~~~Ei~~~~ 68 (82)
..++-.+..+++.|.+ .-+++++|++.+
T Consensus 15 ~~~se~i~~~ANEPSlgLYrlQeHvrksl 43 (118)
T PF10167_consen 15 ERISENIHIVANEPSLGLYRLQEHVRKSL 43 (118)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 3444445556666654 456666665554
No 50
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=32.00 E-value=51 Score=14.05 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHHhhCHHHHHHHH
Q 039054 45 WTMLLLSKHQDWQERAR 61 (82)
Q Consensus 45 ~~~~~l~~~p~~~~~~~ 61 (82)
|-+....++|+++.-+.
T Consensus 14 ~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 14 FGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 45566788999887654
No 51
>TIGR03349 IV_VI_DotU type IV / VI secretion system protein, DotU family. At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology.
Probab=31.61 E-value=96 Score=17.76 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=16.3
Q ss_pred hHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhch
Q 039054 3 TKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQ 36 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~ 36 (82)
.|+..+..-..+........++...|+.+-|-|.
T Consensus 86 ~ff~~l~~l~~~p~~~~~lLev~~~cL~LGF~Gr 119 (183)
T TIGR03349 86 KFFERLERLLADPAEHLDLLELYYLCLSLGFEGK 119 (183)
T ss_pred HHHHHHHHHHhCchhhhhHHHHHHHHHHCCCCcc
Confidence 3444444444333333444555555555555444
No 52
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=31.19 E-value=65 Score=16.15 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 039054 53 HQDWQERARKEFLQALSPS 71 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~~ 71 (82)
.|+....+++||..++...
T Consensus 36 ~p~~l~~lk~dil~VIsKY 54 (84)
T PRK13989 36 PPDYLPALQKELVAVISKY 54 (84)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4889999999999998643
No 53
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=30.51 E-value=73 Score=16.13 Aligned_cols=18 Identities=6% Similarity=0.265 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 039054 53 HQDWQERARKEFLQALSP 70 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~ 70 (82)
.|+....+++||..++..
T Consensus 35 ~p~~l~~lk~eil~VIsK 52 (87)
T PRK13991 35 TPEMMEQMKADLAEVIKR 52 (87)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 589999999999998764
No 54
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=29.97 E-value=65 Score=14.63 Aligned_cols=53 Identities=19% Similarity=0.190 Sum_probs=27.5
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHh-chhhHHHHHHHHHHHHhhCH
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFA-GQETTSVLLNWTMLLLSKHQ 54 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a-G~~~~~~~l~~~~~~l~~~p 54 (82)
|..|.++.......+.+++...+......+.-- |.++....-.|.-...-+||
T Consensus 8 E~~L~~wi~~~~~~g~~it~~~i~~~A~~i~~~~~~~~f~~s~~Wl~rF~~Rh~ 61 (66)
T smart00674 8 EKALYEWILRQEALGIPISGEQIREKALEILQRLGLENFKASNGWLTRFKKRHN 61 (66)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcC
Confidence 445555555555567777777775555544431 22233344445554444444
No 55
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=29.91 E-value=66 Score=15.83 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHH
Q 039054 53 HQDWQERARKEFLQ 66 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~ 66 (82)
+|+...|+++|.+.
T Consensus 2 ~~~~~~rLraE~~a 15 (75)
T PF11998_consen 2 DPEQYARLRAEAQA 15 (75)
T ss_pred CHHHHHHHHHHHHC
Confidence 57778888888653
No 56
>PF09850 DUF2077: Uncharacterized protein conserved in bacteria (DUF2077); InterPro: IPR017732 At least two distinct groups of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (IPR017731 from INTERPRO). The other group is the DotU family, defined by this N-terminal domain, which includes DotU from the Legionella pneumophila type IV secretion system. Many of the proteins in this entry from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology IPR017733 from INTERPRO.; PDB: 4ACL_B 4ACK_B 3U66_A.
Probab=27.20 E-value=1.3e+02 Score=17.22 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=19.0
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchh
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQE 37 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~ 37 (82)
|.|+..+..-..+........++...|+.+-|-|..
T Consensus 97 e~Ff~~l~~l~~~p~~~~~llev~~~cL~LGF~GrY 132 (206)
T PF09850_consen 97 ERFFERLDRLLRDPSPNRDLLEVYYLCLSLGFRGRY 132 (206)
T ss_dssp HHHHHHHHHHHCTTTS-HHHHHHHHHHHHTT--GGG
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHCCCceee
Confidence 345666666554444344555666666666666654
No 57
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.92 E-value=1.5e+02 Score=17.67 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHhHhchhhHHH--HHHHHHHHHhhCHHHHHHHHHHHHHh
Q 039054 24 VIEKCKQFYFAGQETTSV--LLNWTMLLLSKHQDWQERARKEFLQA 67 (82)
Q Consensus 24 i~~~~~~l~~aG~~~~~~--~l~~~~~~l~~~p~~~~~~~~Ei~~~ 67 (82)
+...+..-.+|-+|+... .+..++|.|...|+...+++++++..
T Consensus 133 iakesYd~~lakhHsW~IRtAV~~amYtLPTR~~lL~~Lk~d~~~~ 178 (209)
T KOG4189|consen 133 IAKESYDKTLAKHHSWAIRTAVAAAMYTLPTRPELLCRLKEDMDAA 178 (209)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhCCCcHHHHHHHHhHHHHH
Confidence 344445555566666554 44567889999999999999887654
No 58
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=26.92 E-value=99 Score=15.70 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh
Q 039054 40 SVLLNWTMLLLSKHQDWQERARKEFLQA 67 (82)
Q Consensus 40 ~~~l~~~~~~l~~~p~~~~~~~~Ei~~~ 67 (82)
...+.+.++-+.+-....+++.+|...+
T Consensus 15 ~~i~~y~~~k~~ka~~~~~kL~~en~ql 42 (87)
T PF10883_consen 15 ALILAYLWWKVKKAKKQNAKLQKENEQL 42 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444455666655443
No 59
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=26.87 E-value=40 Score=15.73 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCC
Q 039054 56 WQERARKEFLQALSPS 71 (82)
Q Consensus 56 ~~~~~~~Ei~~~~~~~ 71 (82)
+..++|++++.+++..
T Consensus 2 iL~~vR~HLD~vy~~~ 17 (58)
T PF07577_consen 2 ILPAVRAHLDVVYDQD 17 (58)
T ss_pred HHHHHHHHhhceecCC
Confidence 4678899999888754
No 60
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.81 E-value=1.5e+02 Score=17.88 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 039054 41 VLLNWTMLLLSKHQDWQERARKEFLQAL 68 (82)
Q Consensus 41 ~~l~~~~~~l~~~p~~~~~~~~Ei~~~~ 68 (82)
..+...+..+..-|-..++-++.|+...
T Consensus 173 Tll~ig~v~~~TvP~~YEky~d~ID~~~ 200 (230)
T KOG1792|consen 173 TLLYIGLVLLFTVPVLYEKYEDQIDPYL 200 (230)
T ss_pred HHHHHHHHHHhcccchhHHhHHHHhHHH
Confidence 3333444455566766666666655543
No 61
>PRK03636 hypothetical protein; Provisional
Probab=26.25 E-value=1.4e+02 Score=17.29 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=23.8
Q ss_pred HHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHH
Q 039054 28 CKQFYFAGQETTSVLLNWTMLLLSKHQDWQERAR 61 (82)
Q Consensus 28 ~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~ 61 (82)
.+..++.-......-..|.+.++..|+...+++.
T Consensus 11 Fi~wfL~~y~lK~Re~~wiLnyl~~h~~lL~~VH 44 (179)
T PRK03636 11 FLRWFLNNYQLKRRECVWILNYLMSHDQLMEKVH 44 (179)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCHHHHhhee
Confidence 3444444444555667799999999999888765
No 62
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=26.22 E-value=56 Score=20.64 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=44.8
Q ss_pred hHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhhHHHHH--HHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCc
Q 039054 3 TKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQETTSVLL--NWTMLLLSKHQDWQERARKEFLQALSPSSYTG 75 (82)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~~~~~l--~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~ 75 (82)
.-+.+|.....+++...=++.+-..+..+-+.-.+-.+..- .+..-.+.+||..-.-+-+|-+.++|+-++.+
T Consensus 158 ~ViAEmRG~sDedGrSPFW~~lg~hFF~mdF~~AD~l~g~~~k~FIaeLmPk~PIYv~lL~~eAq~viGqVHp~t 232 (336)
T COG3138 158 KVVAEMRGVSDEDGRSPFWESLGRHFFSMDFSQADYLCGTGQKAFIAELMPKHPIYVHLLSEEAQAVIGQVHPDT 232 (336)
T ss_pred HHHHHHhccccccCCChhHHHHhhhhhccchhhhhHhhccCcchhHHHhCCCCceeeccCCHHHHHHhCCcCCCc
Confidence 34567777777777765566665555554443322222111 23445677889888888888888998766543
No 63
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=25.52 E-value=92 Score=15.91 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHhcCC
Q 039054 53 HQDWQERARKEFLQALSP 70 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~ 70 (82)
.|+....+++||..++..
T Consensus 33 sp~~l~~lk~eIl~VI~k 50 (91)
T PRK13987 33 SPDVLEMIKEDILKVISK 50 (91)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 488999999999999864
No 64
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=25.42 E-value=1.5e+02 Score=17.33 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 039054 42 LLNWTMLLLSKHQDWQERARKEFLQAL 68 (82)
Q Consensus 42 ~l~~~~~~l~~~p~~~~~~~~Ei~~~~ 68 (82)
.+.=.+-..++.|.+|+|+..+|-..+
T Consensus 103 Kl~RiV~~~arRlQiQERLT~qIa~~l 129 (188)
T PLN03044 103 KLARIAEVYARRLQTQERLTRQIADAI 129 (188)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455667889999999998876665
No 65
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=25.03 E-value=67 Score=14.47 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCCC
Q 039054 57 QERARKEFLQALSPSS 72 (82)
Q Consensus 57 ~~~~~~Ei~~~~~~~~ 72 (82)
.+|+..|+.+++....
T Consensus 24 ~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 24 KERIREELEKILSSPN 39 (64)
T ss_dssp HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5799999999987554
No 66
>PRK07033 hypothetical protein; Provisional
Probab=24.64 E-value=1.6e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=24.7
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhh
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQET 38 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~ 38 (82)
+.||..+.....+.....+..++...|+.+-|-|...
T Consensus 143 e~fF~~L~~l~~~P~~~~~lLEl~y~cL~LGF~GrYr 179 (427)
T PRK07033 143 EKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYR 179 (427)
T ss_pred HHHHHHHHHHHhCcccchhHHHHHHHHHHCCCCcccC
Confidence 4566667766665555667777777777777766543
No 67
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=23.54 E-value=1.1e+02 Score=15.14 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=31.2
Q ss_pred CCHHHHHHH--HHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 19 ISFNDVIEK--CKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 19 ~~~~~i~~~--~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
+++.+.... ++.-+..+. ....+.+.++.+...|.-+ .+-.+|+.++.+..
T Consensus 16 L~~~Er~~~~~~L~~Y~~~~--~Vd~LV~~L~~vLdtPaK~-~Ll~~iR~lIp~~d 68 (78)
T cd07347 16 LTDAEREQVTRALERYHQER--NVDDLVRDLYLVLDTPAKL-PLLQFLRQVIPPKD 68 (78)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHcCcHhHH-HHHHHHHHHcCHHH
Confidence 344444333 333344433 5667778888888877665 66678888887543
No 68
>PRK03057 hypothetical protein; Provisional
Probab=22.85 E-value=1.7e+02 Score=17.00 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=23.6
Q ss_pred HHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHH
Q 039054 28 CKQFYFAGQETTSVLLNWTMLLLSKHQDWQERAR 61 (82)
Q Consensus 28 ~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~ 61 (82)
.+..++.-......-..|.+.++..|+...+++.
T Consensus 9 Fi~wfL~~y~lK~Re~~wiLnYl~~h~~lL~~VH 42 (180)
T PRK03057 9 FLTWFLNNHRLKHPDARFVLLYLLQHPHLLENVH 42 (180)
T ss_pred HHHHHHHhccccchhHHHHHHHHHcCHHHHhhee
Confidence 3444444444455667799999999999887765
No 69
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=22.68 E-value=1.7e+02 Score=17.02 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhc
Q 039054 42 LLNWTMLLLSKHQDWQERARKEFLQAL 68 (82)
Q Consensus 42 ~l~~~~~~l~~~p~~~~~~~~Ei~~~~ 68 (82)
.+.=.+-..++.|.+|+++..+|-..+
T Consensus 102 Kl~RiV~~~arRlQiQERLt~qIa~al 128 (185)
T cd00642 102 KLARIVEFFSRRLQVQERLTKQIAVAI 128 (185)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 444455678889999999998876665
No 70
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=22.28 E-value=1.1e+02 Score=15.78 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.9
Q ss_pred hCHHHHHHHHHHHHHhcCC
Q 039054 52 KHQDWQERARKEFLQALSP 70 (82)
Q Consensus 52 ~~p~~~~~~~~Ei~~~~~~ 70 (82)
..|+....+++||..++..
T Consensus 36 ~sp~~l~~mk~dIl~VIsk 54 (97)
T PRK13988 36 LSPELLEQMRKEILEVVAR 54 (97)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3489999999999999754
No 71
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=22.25 E-value=1.6e+02 Score=16.48 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhCHHHHHHHH
Q 039054 40 SVLLNWTMLLLSKHQDWQERAR 61 (82)
Q Consensus 40 ~~~l~~~~~~l~~~p~~~~~~~ 61 (82)
..++..++..++.+|+.+.+++
T Consensus 9 ~~ALryv~~~v~~n~~~~~~Ir 30 (150)
T PF10454_consen 9 PAALRYVMKTVAQNPEFLQRIR 30 (150)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 3455555566666666665555
No 72
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=22.17 E-value=3e+02 Score=19.53 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHhchhhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhcCCCCCCcchhhhcC
Q 039054 22 NDVIEKCKQFYFAGQETTSVLLNWTMLLLSKHQDWQERARKEFLQALSPSSYTGLAVGILG 82 (82)
Q Consensus 22 ~~i~~~~~~l~~aG~~~~~~~l~~~~~~l~~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~ 82 (82)
..+..-+..+-.+|. +.+.-..-++..-..|.=+.+++|+.+.+-+.+.+.+.-.+.-||
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (622)
T PTZ00257 12 RSVAARLMRLAAAGL-VMAVGAAAVWAQAAGHHCIHDKLQARVLQSVAQQRSPPVSVSALG 71 (622)
T ss_pred hhHHHHHHHHHhhhH-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCCcceeccC
Confidence 344444555555555 222222223333444656677777776666655554444444443
No 73
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=3.1e+02 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=7.4
Q ss_pred hHHHHHHhhcCC
Q 039054 3 TKFREIEEHGNN 14 (82)
Q Consensus 3 ~~~~~~~~~~~~ 14 (82)
-|+..|+++..+
T Consensus 110 I~frAWkea~~d 121 (1005)
T KOG1949|consen 110 IYFRAWKEASGD 121 (1005)
T ss_pred HHHHHHHHhccc
Confidence 466777765544
No 74
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=21.04 E-value=74 Score=17.95 Aligned_cols=27 Identities=4% Similarity=0.105 Sum_probs=18.9
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhcCCCC
Q 039054 46 TMLLLSKHQDWQERARKEFLQALSPSS 72 (82)
Q Consensus 46 ~~~~l~~~p~~~~~~~~Ei~~~~~~~~ 72 (82)
++-.+..+|.+-...+++|++++..++
T Consensus 114 ai~~iL~~p~V~~~~K~~i~~i~~~Kg 140 (155)
T PF10777_consen 114 AIDKILQSPQVPDEIKQGIQRIISTKG 140 (155)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 334566777777888888888876543
No 75
>PRK08126 hypothetical protein; Provisional
Probab=20.79 E-value=2.1e+02 Score=19.02 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=25.4
Q ss_pred hhHHHHHHhhcCCCCCCCCHHHHHHHHHHHhHhchhh
Q 039054 2 ETKFREIEEHGNNKNVGISFNDVIEKCKQFYFAGQET 38 (82)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~aG~~~ 38 (82)
+.||..+.....+........++...|+.+-|-|...
T Consensus 158 ekfF~~L~~l~~~p~~~~dlLEl~y~cL~LGF~GrYr 194 (432)
T PRK08126 158 EKVFLLIGRLATDPQEHVDLLEVIYRILSLGFEGRYS 194 (432)
T ss_pred HHHHHHHHHHHhCcccchhHHHHHHHHHhCCCCCcCC
Confidence 3566666666665555677778888888877777644
No 76
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=96 Score=15.00 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=17.9
Q ss_pred HHhhCHHHHHHHHHHHHHhcCCC
Q 039054 49 LLSKHQDWQERARKEFLQALSPS 71 (82)
Q Consensus 49 ~l~~~p~~~~~~~~Ei~~~~~~~ 71 (82)
+|..+|++.+-++.|++++....
T Consensus 42 hLfV~p~~vemvk~~le~~le~n 64 (71)
T KOG3451|consen 42 HLFVNPSIVEMVKNELERILENN 64 (71)
T ss_pred eeeecHHHHHHHHHHHHHHHHhc
Confidence 46678888889999998887643
No 77
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.45 E-value=1.3e+02 Score=14.70 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=11.4
Q ss_pred HHH-HHHHHHHHHHhcC
Q 039054 54 QDW-QERARKEFLQALS 69 (82)
Q Consensus 54 p~~-~~~~~~Ei~~~~~ 69 (82)
|.+ .+-+++||.++..
T Consensus 56 P~lVErlVr~EIeRi~r 72 (73)
T PF10691_consen 56 PGLVERLVREEIERIAR 72 (73)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 554 5677889998764
No 78
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=20.43 E-value=1.3e+02 Score=15.10 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 039054 53 HQDWQERARKEFLQALSPS 71 (82)
Q Consensus 53 ~p~~~~~~~~Ei~~~~~~~ 71 (82)
.|+..+.+++||..++...
T Consensus 35 ~p~~l~~lk~dIl~VIsKY 53 (86)
T PRK00296 35 EPDYLPQLRKEILEVIAKY 53 (86)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 4888999999999998643
No 79
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=20.26 E-value=44 Score=19.05 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=21.8
Q ss_pred hCHHHHHHHHHHHHHhcCCCCCCcchhhhcC
Q 039054 52 KHQDWQERARKEFLQALSPSSYTGLAVGILG 82 (82)
Q Consensus 52 ~~p~~~~~~~~Ei~~~~~~~~~~~~~~~~~~ 82 (82)
.+|+-..-.|+|+..++....+..-++=.||
T Consensus 99 ad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 99 ADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred CCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 5677788889999988876666555554444
Done!