BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039056
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
 pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
 pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
 pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
 pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
 pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
 pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
 pdb|1TL5|A Chain A, Solution Structure Of Apohah1
 pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
          And Hah1 Mediated By Cu(I)
 pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Monomer)
 pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Dimer)
 pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Dimer)
          Length = 68

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 26 TANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLN 69
          + +M C  C   VS++++KL G++ Y +D+PNK+V ++++  ++
Sbjct: 7  SVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMD 49


>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
          Length = 68

 Score = 35.4 bits (80), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 26 TANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLN 69
          + +M C  C   VS++++KL G++ Y +D+PNK+V ++++  ++
Sbjct: 6  SVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMD 48


>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
          Zinc(Ii) Atpase Ziaa In Its Apo Form
          Length = 111

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 27 ANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
            M CT C+ ++   + +L G+ E  V V   R+TV  D
Sbjct: 15 GGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYD 53


>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
          Zinc(Ii) Atpase Ziaa In Its Apo Form
          Length = 111

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 27 ANMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD 65
            M CT C+ ++   + +L G+ E  V V   R+TV  D
Sbjct: 10 GGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYD 48


>pdb|3GE9|A Chain A, A Structurally Atypical Thyx From Corynebacterium
           Glutamicum Nchu 87078 Is Not Required For Thymidylate
           Biosynthesis
          Length = 255

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 45  LTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISVSGLFAS 99
           L  LEE + D PN  +  K      + V  + T SR+ +SG ++ +    G+ AS
Sbjct: 152 LNALEEKLGDEPNALLRKKQARQAARAVLPNATESRIVVSGNFRTWRHFIGMRAS 206


>pdb|3FNN|A Chain A, Biochemical And Structural Analysis Of An Atypical Thyx:
           Corynebacterium Glutamicum Nchu 87078 Depends On Thya
           For Thymidine Biosynthesis
          Length = 256

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%)

Query: 45  LTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQFFISVSGLFAS 99
           L  LEE + D PN  +  K      + V  + T SR+ +SG ++ +    G+ AS
Sbjct: 153 LNALEEKLGDEPNALLRKKQARQAARAVLPNATESRIVVSGNFRTWRHFIGMRAS 207


>pdb|2KKH|A Chain A, Structure Of The Zinc Binding Domain Of The Atpase Hma4
          Length = 95

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 31 CTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKAD------FGLNKNVKDDPTRSRVKIS 84
          CT     +  I+  L G++EY V VP++ V V  D      F + K + +    + V+++
Sbjct: 27 CTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN 86

Query: 85 GCYQF 89
          G   F
Sbjct: 87 GETSF 91


>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
          With Bound Adp From Francisella Tularensis Subsp.
          Tularensis Schu S4
          Length = 395

 Score = 26.2 bits (56), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 53 VDVPNKRVTVKADFGLNKNVKDDPTRSRVKI 83
          VD+ +K+V V+ DF  N  VKD    S+V+I
Sbjct: 12 VDLKDKKVLVRVDF--NVPVKDGKVTSKVRI 40


>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
          From Francisella Tularensis Subsp. Tularensis Schu S4
 pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
          From Francisella Tularensis Subsp. Tularensis Schu S4
          Length = 392

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 53 VDVPNKRVTVKADFGLNKNVKDDPTRSRVKI 83
          VD+ +K+V V+ DF  N  VKD    S+V+I
Sbjct: 9  VDLKDKKVLVRVDF--NVPVKDGKVTSKVRI 37


>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 76  PTRSRVKISGCYQFFISVSGLFASAAF 102
           P  S+ +++GCY +  S   +FA  +F
Sbjct: 341 PLNSQQELAGCYAYLASKGSVFALTSF 367


>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
 pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
 pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
 pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
          Length = 371

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 35  RGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISG 85
           R ++++I  K+  + + I+   ++ +   AD  +N  VK D   S+VKI+G
Sbjct: 323 RAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN--VKKDGNVSKVKING 371


>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
 pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
          Length = 415

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 36 GRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88
          G   + I +L+ LE   +    ++  +KA+F +  NV+D      V+++  YQ
Sbjct: 13 GHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVED----GSVQLADHYQ 61


>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
          Length = 415

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 36 GRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISGCYQ 88
          G   + I +L+ LE   +    ++  +KA+F +  NV+D      V+++  YQ
Sbjct: 13 GHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNVED----GSVQLADHYQ 61


>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
          Length = 71

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 28 NMGCTRCRGRVSQIISKLTGLEEYIVDVPNKRVTVKADFGLNKNVKDDPTRSRVKISG 85
           M C  C   + + + +L G+ E  V V   R+TV  D    K V +   + R+   G
Sbjct: 11 GMRCAACASSIERALERLKGVAEASVTVATGRLTVTYD---PKQVSEITIQERIAALG 65


>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
 pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
          Metallochaperone, Atx1
 pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
          Length = 73

 Score = 25.4 bits (54), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 29 MGCTRCRGRVSQIISKLT--------GLEEYIVDVPNKRVTVKADFGLNK 70
          M C+ C G V+++++KL          LE+ +VDV     T+  DF L K
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDV---YTTLPYDFILEK 59


>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
          Metallochaperone, Atx1
          Length = 73

 Score = 25.4 bits (54), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 29 MGCTRCRGRVSQIISKLT--------GLEEYIVDVPNKRVTVKADFGLNK 70
          M C+ C G V+++++KL          LE+ +VDV     T+  DF L K
Sbjct: 13 MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDV---YTTLPYDFILEK 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,593,672
Number of Sequences: 62578
Number of extensions: 85044
Number of successful extensions: 296
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 19
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)