Query 039060
Match_columns 1040
No_of_seqs 437 out of 1969
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02400 cellulose synthase 100.0 2E-310 4E-315 2746.3 81.5 1024 1-1040 1-1085(1085)
2 PLN02436 cellulose synthase A 100.0 5E-308 1E-312 2714.3 83.2 1029 1-1040 1-1093(1094)
3 PLN02189 cellulose synthase 100.0 1E-303 3E-308 2679.7 84.1 1034 1-1040 1-1040(1040)
4 PLN02638 cellulose synthase A 100.0 2E-299 5E-304 2648.5 81.6 1008 22-1040 3-1079(1079)
5 PLN02915 cellulose synthase A 100.0 3E-288 7E-293 2546.4 79.9 971 29-1040 10-1044(1044)
6 PLN02195 cellulose synthase A 100.0 6E-277 1E-281 2438.3 78.7 947 31-1040 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 1E-245 3E-250 2179.5 75.2 949 4-1027 89-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 1E-212 3E-217 1850.1 48.6 701 332-1034 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 5E-198 1E-202 1729.7 62.8 726 234-1019 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 3E-189 6E-194 1664.2 65.7 707 233-1017 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 5.4E-67 1.2E-71 636.5 50.4 495 253-997 57-568 (713)
12 PRK11498 bcsA cellulose syntha 100.0 1.3E-66 2.8E-71 634.2 47.3 472 255-992 189-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 1.9E-44 4.1E-49 316.4 4.1 80 26-105 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 9.1E-37 2E-41 368.5 44.3 358 251-832 40-415 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 1.9E-34 4.1E-39 312.5 24.0 182 497-787 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 2.2E-31 4.8E-36 303.8 29.5 233 329-791 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 7E-30 1.5E-34 296.3 34.0 232 327-792 72-307 (444)
18 PRK11204 N-glycosyltransferase 100.0 2.1E-28 4.6E-33 280.4 35.5 232 326-792 50-286 (420)
19 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.8E-28 3.9E-33 284.4 34.9 283 326-844 45-341 (439)
20 PRK14716 bacteriophage N4 adso 100.0 3.9E-26 8.5E-31 268.3 36.4 266 328-818 64-355 (504)
21 PRK11234 nfrB bacteriophage N4 99.9 6.4E-26 1.4E-30 276.0 30.4 241 327-790 60-334 (727)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 1.9E-26 4E-31 239.9 21.6 229 330-789 1-234 (234)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 3.9E-26 8.4E-31 239.9 22.6 228 330-785 1-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 7.4E-25 1.6E-29 232.5 22.3 233 330-791 1-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.9 2.1E-24 4.5E-29 226.4 23.4 229 333-791 1-234 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 3.2E-24 6.9E-29 223.5 8.7 224 330-784 1-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.9 4.2E-21 9E-26 232.0 28.7 172 512-790 139-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.9 4.1E-21 8.9E-26 218.5 26.1 233 327-785 38-272 (373)
29 cd04190 Chitin_synth_C C-termi 99.9 6.1E-22 1.3E-26 212.0 13.0 166 529-787 71-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.9 1E-20 2.3E-25 195.5 19.5 227 334-784 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 3E-20 6.5E-25 191.4 17.5 195 330-784 1-195 (196)
32 COG2943 MdoH Membrane glycosyl 99.8 2.9E-17 6.2E-22 187.3 39.1 220 499-837 214-440 (736)
33 cd06434 GT2_HAS Hyaluronan syn 99.8 4.9E-19 1.1E-23 185.1 19.6 167 513-787 63-234 (235)
34 TIGR03469 HonB hopene-associat 99.8 8.8E-18 1.9E-22 192.2 28.3 242 326-782 36-279 (384)
35 cd06439 CESA_like_1 CESA_like_ 99.8 1.9E-18 4.1E-23 183.0 20.9 223 326-788 25-251 (251)
36 cd02525 Succinoglycan_BP_ExoA 99.7 1.5E-16 3.2E-21 166.6 22.0 233 331-791 1-233 (249)
37 cd06436 GlcNAc-1-P_transferase 99.7 7.8E-16 1.7E-20 158.7 14.9 114 499-619 52-175 (191)
38 PF13632 Glyco_trans_2_3: Glyc 99.7 4.6E-16 9.9E-21 159.3 12.8 138 534-785 1-143 (193)
39 cd06438 EpsO_like EpsO protein 99.6 2.9E-14 6.2E-19 145.3 13.7 102 512-619 61-167 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.5 1.3E-13 2.9E-18 140.7 16.4 121 330-574 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.5 7.9E-13 1.7E-17 135.2 16.6 65 499-577 57-122 (201)
42 cd06433 GT_2_WfgS_like WfgS an 99.3 1.5E-11 3.4E-16 123.7 15.4 54 514-576 62-116 (202)
43 cd02510 pp-GalNAc-T pp-GalNAc- 99.3 4E-11 8.6E-16 132.1 19.2 110 333-559 1-110 (299)
44 cd04196 GT_2_like_d Subfamily 99.3 2.4E-11 5.1E-16 124.6 15.2 119 333-576 1-120 (214)
45 cd02522 GT_2_like_a GT_2_like_ 99.3 1.1E-10 2.4E-15 120.8 18.1 40 332-377 1-40 (221)
46 cd06420 GT2_Chondriotin_Pol_N 99.3 1.1E-10 2.4E-15 117.4 16.6 41 514-560 66-106 (182)
47 PF13506 Glyco_transf_21: Glyc 99.3 2.8E-11 6E-16 125.1 12.0 155 512-783 15-175 (175)
48 cd06913 beta3GnTL1_like Beta 1 99.2 1.8E-10 3.8E-15 120.5 17.1 43 334-381 1-43 (219)
49 PLN02726 dolichyl-phosphate be 99.2 3.1E-10 6.7E-15 121.4 19.2 60 499-572 70-129 (243)
50 cd04186 GT_2_like_c Subfamily 99.2 2E-10 4.4E-15 112.3 16.0 51 513-572 60-111 (166)
51 PF03142 Chitin_synth_2: Chiti 99.2 2.9E-09 6.3E-14 126.3 27.5 53 735-789 324-378 (527)
52 cd06442 DPM1_like DPM1_like re 99.2 7.1E-10 1.5E-14 115.1 18.7 60 499-572 55-114 (224)
53 cd04185 GT_2_like_b Subfamily 99.2 4.4E-10 9.6E-15 115.5 15.9 65 499-575 53-117 (202)
54 cd06423 CESA_like CESA_like is 99.2 2.7E-10 5.9E-15 110.1 13.0 63 499-575 55-118 (180)
55 cd02526 GT2_RfbF_like RfbF is 99.1 2.6E-10 5.6E-15 119.6 12.4 65 499-575 49-117 (237)
56 PF00535 Glycos_transf_2: Glyc 99.1 1E-10 2.2E-15 113.4 6.6 111 498-620 54-166 (169)
57 PF14570 zf-RING_4: RING/Ubox 99.1 3.9E-11 8.6E-16 98.8 2.4 48 37-87 1-48 (48)
58 PRK10073 putative glycosyl tra 99.0 5.8E-09 1.2E-13 117.8 16.9 110 328-560 4-113 (328)
59 cd04188 DPG_synthase DPG_synth 99.0 6.1E-09 1.3E-13 108.3 15.5 52 514-574 69-120 (211)
60 PRK10018 putative glycosyl tra 99.0 1.9E-08 4.1E-13 111.5 18.1 110 328-559 3-112 (279)
61 PRK10063 putative glycosyl tra 98.9 3.2E-08 7E-13 107.5 17.1 48 330-381 1-49 (248)
62 cd04179 DPM_DPG-synthase_like 98.9 2E-08 4.4E-13 101.0 13.4 65 499-577 56-120 (185)
63 TIGR01556 rhamnosyltran L-rham 98.8 5E-08 1.1E-12 106.5 15.5 68 498-575 46-113 (281)
64 PTZ00260 dolichyl-phosphate be 98.7 4.5E-07 9.7E-12 102.9 18.2 52 326-381 66-123 (333)
65 cd04187 DPM1_like_bac Bacteria 98.7 2E-07 4.3E-12 94.4 12.4 104 499-620 57-160 (181)
66 cd00761 Glyco_tranf_GTA_type G 98.6 6.3E-07 1.4E-11 84.6 14.3 52 512-572 62-114 (156)
67 COG1216 Predicted glycosyltran 98.6 1.1E-06 2.3E-11 98.1 18.3 122 329-576 2-125 (305)
68 PF10111 Glyco_tranf_2_2: Glyc 98.6 1.3E-06 2.9E-11 96.5 17.7 61 514-580 75-135 (281)
69 PRK13915 putative glucosyl-3-p 98.5 6.6E-07 1.4E-11 100.5 12.0 51 513-571 101-152 (306)
70 KOG2571 Chitin synthase/hyalur 98.4 5.2E-06 1.1E-10 102.6 18.1 49 735-785 549-597 (862)
71 PRK10714 undecaprenyl phosphat 98.2 1.2E-05 2.6E-10 91.0 14.2 40 514-558 77-116 (325)
72 COG0463 WcaA Glycosyltransfera 97.9 0.00013 2.8E-09 69.9 11.1 47 329-381 2-48 (291)
73 KOG2547 Ceramide glucosyltrans 97.8 0.00028 6.1E-09 80.1 14.2 158 512-782 155-313 (431)
74 cd02511 Beta4Glucosyltransfera 97.8 0.00017 3.8E-09 76.8 11.9 42 514-560 58-99 (229)
75 COG5175 MOT2 Transcriptional r 96.8 0.00045 9.8E-09 77.0 1.7 48 36-86 16-63 (480)
76 PF14446 Prok-RING_1: Prokaryo 96.1 0.0028 6.1E-08 54.1 1.8 46 33-86 4-51 (54)
77 cd02514 GT13_GLCNAC-TI GT13_GL 96.1 0.06 1.3E-06 61.9 13.1 42 332-377 2-43 (334)
78 TIGR00570 cdk7 CDK-activating 95.5 0.013 2.9E-07 66.1 4.2 59 33-93 2-60 (309)
79 KOG2978 Dolichol-phosphate man 95.3 0.082 1.8E-06 56.0 9.1 53 498-560 64-116 (238)
80 PF02364 Glucan_synthase: 1,3- 94.3 0.42 9.1E-06 60.3 13.2 196 504-816 263-484 (817)
81 KOG2977 Glycosyltransferase [G 93.4 0.52 1.1E-05 52.9 10.5 60 331-401 68-130 (323)
82 PF05290 Baculo_IE-1: Baculovi 89.2 0.2 4.4E-06 50.2 1.7 52 35-90 81-135 (140)
83 cd00162 RING RING-finger (Real 88.5 0.36 7.8E-06 37.5 2.4 44 36-85 1-44 (45)
84 smart00504 Ubox Modified RING 83.0 1.1 2.4E-05 38.3 2.9 43 36-86 3-45 (63)
85 KOG3737 Predicted polypeptide 80.7 4.5 9.7E-05 47.3 7.4 48 325-375 150-197 (603)
86 KOG3736 Polypeptide N-acetylga 79.6 2.5 5.5E-05 52.0 5.3 49 326-377 138-186 (578)
87 KOG0823 Predicted E3 ubiquitin 75.4 2.4 5.1E-05 46.4 3.1 46 34-87 47-95 (230)
88 PRK14559 putative protein seri 75.3 1.3 2.9E-05 55.2 1.4 24 64-88 30-53 (645)
89 PLN03208 E3 ubiquitin-protein 74.7 2.6 5.5E-05 45.2 3.1 62 20-88 3-80 (193)
90 PF13639 zf-RING_2: Ring finge 73.1 2.2 4.7E-05 34.5 1.7 43 36-83 2-44 (44)
91 PHA02929 N1R/p28-like protein; 72.8 3.5 7.6E-05 45.6 3.7 56 32-88 172-228 (238)
92 smart00659 RPOLCX RNA polymera 72.0 2.2 4.9E-05 35.3 1.5 26 36-63 4-29 (44)
93 PF03604 DNA_RNApol_7kD: DNA d 71.0 3 6.5E-05 32.4 1.9 26 36-63 2-27 (32)
94 PF14447 Prok-RING_4: Prokaryo 70.3 1.9 4.1E-05 37.4 0.7 47 33-89 6-52 (55)
95 KOG3800 Predicted E3 ubiquitin 68.5 3.7 7.9E-05 46.3 2.7 53 35-89 1-53 (300)
96 PHA02862 5L protein; Provision 67.9 3.1 6.7E-05 42.6 1.8 49 34-88 2-54 (156)
97 KOG2068 MOT2 transcription fac 65.2 4.3 9.3E-05 46.6 2.5 52 34-89 249-300 (327)
98 KOG2932 E3 ubiquitin ligase in 63.3 4.2 9E-05 46.2 1.9 46 47-92 84-139 (389)
99 PF13704 Glyco_tranf_2_4: Glyc 62.4 30 0.00065 31.9 7.2 33 344-381 3-35 (97)
100 smart00184 RING Ring finger. E 62.3 6.8 0.00015 29.0 2.4 39 37-82 1-39 (39)
101 PHA02825 LAP/PHD finger-like p 62.1 5.3 0.00011 41.6 2.2 51 33-89 7-61 (162)
102 KOG0916 1,3-beta-glucan syntha 61.6 1.1E+02 0.0024 41.6 14.0 81 735-825 1173-1258(1679)
103 PF03966 Trm112p: Trm112p-like 61.6 1.4 3E-05 39.3 -1.8 25 65-89 42-66 (68)
104 KOG3738 Predicted polypeptide 59.6 12 0.00027 44.0 4.8 50 327-379 121-170 (559)
105 PRK00420 hypothetical protein; 59.5 3.7 7.9E-05 40.6 0.6 29 54-88 24-52 (112)
106 PF13923 zf-C3HC4_2: Zinc fing 57.4 8.3 0.00018 30.4 2.2 39 37-82 1-39 (39)
107 KOG0006 E3 ubiquitin-protein l 56.9 7.2 0.00016 44.4 2.3 40 29-69 310-352 (446)
108 COG5114 Histone acetyltransfer 55.2 4 8.8E-05 46.3 0.1 36 36-75 7-43 (432)
109 PF13712 Glyco_tranf_2_5: Glyc 54.7 24 0.00052 38.3 5.8 45 513-561 40-85 (217)
110 PF00097 zf-C3HC4: Zinc finger 54.6 7.5 0.00016 30.6 1.5 40 37-82 1-41 (41)
111 PF14471 DUF4428: Domain of un 54.5 6.8 0.00015 33.4 1.3 28 36-69 1-28 (51)
112 PF02318 FYVE_2: FYVE-type zin 53.5 2.1 4.5E-05 42.2 -2.3 47 33-82 53-100 (118)
113 smart00291 ZnF_ZZ Zinc-binding 52.0 11 0.00025 30.8 2.2 38 33-75 3-41 (44)
114 PRK15103 paraquat-inducible me 51.4 11 0.00023 45.1 2.8 31 51-90 219-249 (419)
115 PRK12495 hypothetical protein; 51.0 7.5 0.00016 42.4 1.3 29 53-88 42-70 (226)
116 smart00249 PHD PHD zinc finger 50.7 8.3 0.00018 30.3 1.2 43 36-82 1-47 (47)
117 PRK00398 rpoP DNA-directed RNA 49.4 10 0.00022 31.2 1.5 27 36-63 5-31 (46)
118 TIGR00155 pqiA_fam integral me 47.8 11 0.00023 44.9 2.0 30 52-89 214-243 (403)
119 PRK12380 hydrogenase nickel in 47.7 6.1 0.00013 38.9 -0.0 29 53-88 70-98 (113)
120 PF13920 zf-C3HC4_3: Zinc fing 47.7 12 0.00027 31.0 1.8 46 35-88 3-49 (50)
121 PHA02926 zinc finger-like prot 47.2 17 0.00038 39.9 3.3 62 31-92 167-235 (242)
122 KOG1941 Acetylcholine receptor 44.9 7.9 0.00017 45.2 0.3 71 33-105 364-439 (518)
123 PRK04023 DNA polymerase II lar 44.5 14 0.0003 48.0 2.4 45 32-87 624-674 (1121)
124 KOG0457 Histone acetyltransfer 44.3 8.8 0.00019 45.5 0.6 57 35-98 15-74 (438)
125 PRK07220 DNA topoisomerase I; 43.6 12 0.00026 47.9 1.6 48 35-84 590-643 (740)
126 PF07282 OrfB_Zn_ribbon: Putat 43.5 16 0.00035 32.2 2.0 33 33-66 27-59 (69)
127 PF11077 DUF2616: Protein of u 43.0 7.9 0.00017 41.0 -0.1 26 37-66 55-81 (173)
128 PRK00564 hypA hydrogenase nick 41.5 8.6 0.00019 38.0 -0.0 30 53-89 71-101 (117)
129 COG0551 TopA Zn-finger domain 40.9 18 0.00038 36.5 2.1 50 31-84 14-68 (140)
130 TIGR02443 conserved hypothetic 40.8 17 0.00036 32.2 1.6 30 33-62 8-40 (59)
131 COG1996 RPC10 DNA-directed RNA 40.8 13 0.00029 31.6 1.0 28 35-63 7-34 (49)
132 TIGR02460 osmo_MPGsynth mannos 40.6 1E+02 0.0022 36.2 8.2 39 512-555 141-181 (381)
133 PF03452 Anp1: Anp1; InterPro 40.6 4.6E+02 0.01 29.9 13.2 45 326-374 21-66 (269)
134 KOG2068 MOT2 transcription fac 40.5 10 0.00022 43.7 0.3 31 60-90 1-33 (327)
135 PF01155 HypA: Hydrogenase exp 40.4 4.5 9.7E-05 39.7 -2.2 30 53-89 70-99 (113)
136 PF06906 DUF1272: Protein of u 40.3 25 0.00054 30.8 2.5 47 36-88 7-53 (57)
137 cd02249 ZZ Zinc finger, ZZ typ 39.9 19 0.0004 29.7 1.7 31 36-71 2-33 (46)
138 PF07851 TMPIT: TMPIT-like pro 39.8 4.9E+02 0.011 30.6 13.5 19 870-888 172-190 (330)
139 COG4818 Predicted membrane pro 39.5 1.9E+02 0.0042 28.1 8.4 88 889-1002 5-92 (105)
140 PF11238 DUF3039: Protein of u 39.4 12 0.00026 32.9 0.5 13 77-89 45-57 (58)
141 PRK14503 mannosyl-3-phosphogly 39.2 1.1E+02 0.0024 36.1 8.2 39 512-555 142-182 (393)
142 cd02335 ZZ_ADA2 Zinc finger, Z 39.2 19 0.0004 30.3 1.6 30 36-69 2-32 (49)
143 TIGR00100 hypA hydrogenase nic 37.8 12 0.00026 37.0 0.3 29 54-89 71-99 (115)
144 PRK03681 hypA hydrogenase nick 37.3 11 0.00024 37.1 0.0 29 54-89 71-100 (114)
145 TIGR00599 rad18 DNA repair pro 37.0 27 0.00058 41.6 3.0 53 27-87 18-71 (397)
146 PRK14890 putative Zn-ribbon RN 37.0 44 0.00095 29.7 3.5 49 33-83 6-55 (59)
147 cd00350 rubredoxin_like Rubred 36.9 11 0.00024 29.1 -0.1 19 70-88 11-29 (33)
148 PF09623 Cas_NE0113: CRISPR-as 36.6 2.4E+02 0.0053 31.2 10.0 61 333-402 3-63 (224)
149 cd00899 b4GalT Beta-4-Galactos 36.5 32 0.00069 37.8 3.3 80 680-789 111-200 (219)
150 PF07649 C1_3: C1-like domain; 36.1 17 0.00036 27.3 0.8 28 36-67 2-29 (30)
151 PF03884 DUF329: Domain of unk 35.8 17 0.00037 31.9 0.9 33 73-105 15-53 (57)
152 COG0068 HypF Hydrogenase matur 35.0 27 0.00058 44.1 2.7 72 15-87 80-184 (750)
153 PF14634 zf-RING_5: zinc-RING 34.8 31 0.00067 28.0 2.2 43 37-84 2-44 (44)
154 PRK11827 hypothetical protein; 34.3 26 0.00057 31.1 1.8 32 62-93 12-43 (60)
155 COG4858 Uncharacterized membra 33.5 2.1E+02 0.0046 31.0 8.5 60 943-1002 100-162 (226)
156 COG4739 Uncharacterized protei 33.5 22 0.00047 36.8 1.3 46 43-88 77-122 (182)
157 cd00730 rubredoxin Rubredoxin; 33.0 12 0.00027 31.8 -0.4 8 78-85 36-43 (50)
158 PF02709 Glyco_transf_7C: N-te 32.0 33 0.00072 31.5 2.2 49 680-758 19-67 (78)
159 COG2888 Predicted Zn-ribbon RN 32.0 42 0.0009 29.8 2.6 48 34-83 9-57 (61)
160 PF13896 Glyco_transf_49: Glyc 31.9 53 0.0011 37.8 4.3 45 520-569 120-164 (317)
161 PRK14973 DNA topoisomerase I; 31.8 27 0.00059 45.8 2.2 48 35-85 589-644 (936)
162 PRK07219 DNA topoisomerase I; 31.7 24 0.00051 45.8 1.6 53 34-89 688-746 (822)
163 PF03071 GNT-I: GNT-I family; 31.5 47 0.001 40.0 3.9 48 327-379 90-138 (434)
164 TIGR00595 priA primosomal prot 31.3 21 0.00046 43.6 1.1 50 46-95 205-259 (505)
165 PF09484 Cas_TM1802: CRISPR-as 31.2 23 0.00049 44.1 1.3 44 31-75 195-254 (593)
166 cd02336 ZZ_RSC8 Zinc finger, Z 31.2 31 0.00066 28.9 1.6 35 36-75 2-37 (45)
167 TIGR01562 FdhE formate dehydro 31.2 45 0.00097 38.5 3.5 29 33-61 183-218 (305)
168 TIGR01206 lysW lysine biosynth 30.8 32 0.0007 29.9 1.7 13 36-48 4-16 (54)
169 PF00628 PHD: PHD-finger; Int 29.8 35 0.00075 28.1 1.8 45 36-84 1-50 (51)
170 PF00265 TK: Thymidine kinase; 29.7 19 0.00041 38.0 0.2 34 35-68 138-176 (176)
171 PRK11595 DNA utilization prote 29.6 28 0.00062 37.9 1.6 39 34-85 5-43 (227)
172 PRK14873 primosome assembly pr 29.3 34 0.00074 43.4 2.4 11 76-86 422-432 (665)
173 KOG2857 Predicted MYND Zn-fing 28.9 28 0.0006 35.8 1.2 45 34-90 5-50 (157)
174 PRK03824 hypA hydrogenase nick 28.8 17 0.00036 36.9 -0.3 12 75-86 106-117 (135)
175 KOG3507 DNA-directed RNA polym 28.5 22 0.00048 31.3 0.4 27 35-63 21-47 (62)
176 PRK04296 thymidine kinase; Pro 28.4 27 0.00058 36.9 1.1 35 35-69 141-186 (190)
177 PF13248 zf-ribbon_3: zinc-rib 28.4 16 0.00034 26.8 -0.4 15 71-85 11-25 (26)
178 KOG0311 Predicted E3 ubiquitin 28.1 15 0.00033 42.6 -0.8 45 36-86 45-89 (381)
179 PF13240 zinc_ribbon_2: zinc-r 27.2 16 0.00034 26.3 -0.6 12 73-84 10-21 (23)
180 PF09526 DUF2387: Probable met 27.2 37 0.00081 31.0 1.6 30 33-62 7-39 (71)
181 cd02340 ZZ_NBR1_like Zinc fing 26.2 44 0.00095 27.5 1.7 29 36-69 2-31 (43)
182 PRK08359 transcription factor; 26.1 24 0.00052 37.5 0.2 31 34-72 6-42 (176)
183 PRK14502 bifunctional mannosyl 26.0 2.2E+02 0.0048 36.5 8.4 41 512-555 146-186 (694)
184 cd03031 GRX_GRX_like Glutaredo 25.8 29 0.00064 35.8 0.8 43 33-84 98-141 (147)
185 PRK14714 DNA polymerase II lar 25.7 33 0.00073 45.8 1.4 48 35-89 668-722 (1337)
186 PRK06319 DNA topoisomerase I/S 25.7 36 0.00079 44.4 1.8 56 33-91 591-660 (860)
187 PF03107 C1_2: C1 domain; Int 25.7 42 0.00091 25.4 1.4 28 36-67 2-29 (30)
188 PF12773 DZR: Double zinc ribb 25.5 45 0.00097 27.6 1.7 12 34-45 12-23 (50)
189 COG2191 Formylmethanofuran deh 24.6 30 0.00065 37.6 0.6 25 35-69 173-201 (206)
190 TIGR02921 PEP_integral PEP-CTE 24.5 1.6E+03 0.034 28.8 14.6 26 819-844 46-71 (952)
191 KOG2824 Glutaredoxin-related p 24.5 45 0.00098 37.8 1.9 44 31-83 226-269 (281)
192 PTZ00293 thymidine kinase; Pro 24.2 34 0.00074 37.4 1.0 35 35-69 138-177 (211)
193 PF06570 DUF1129: Protein of u 23.5 4.4E+02 0.0096 28.3 9.3 25 939-963 81-105 (206)
194 KOG4217 Nuclear receptors of t 23.5 42 0.0009 40.5 1.5 33 32-89 267-299 (605)
195 TIGR00143 hypF [NiFe] hydrogen 23.0 56 0.0012 41.8 2.7 74 15-89 46-153 (711)
196 COG4707 Uncharacterized protei 23.0 30 0.00066 33.3 0.2 44 434-488 20-70 (107)
197 COG4391 Uncharacterized protei 22.9 28 0.00061 31.0 0.0 17 72-88 44-60 (62)
198 PRK05580 primosome assembly pr 22.6 35 0.00077 43.2 0.8 44 36-91 383-436 (679)
199 PF00643 zf-B_box: B-box zinc 22.6 41 0.00089 26.7 0.9 31 34-71 3-33 (42)
200 KOG2177 Predicted E3 ubiquitin 22.5 42 0.0009 35.9 1.2 44 33-84 12-55 (386)
201 PF14446 Prok-RING_1: Prokaryo 22.2 24 0.00052 30.7 -0.6 17 73-89 18-34 (54)
202 COG1326 Uncharacterized archae 22.1 45 0.00097 36.0 1.3 26 36-61 8-38 (201)
203 TIGR03830 CxxCG_CxxCG_HTH puta 22.1 33 0.00071 33.4 0.3 40 37-86 1-41 (127)
204 smart00744 RINGv The RING-vari 22.1 98 0.0021 26.1 3.1 45 36-83 1-49 (49)
205 PF08274 PhnA_Zn_Ribbon: PhnA 21.2 36 0.00078 26.2 0.3 25 35-61 3-27 (30)
206 TIGR00155 pqiA_fam integral me 21.1 50 0.0011 39.4 1.6 35 52-90 12-47 (403)
207 KOG2041 WD40 repeat protein [G 20.7 32 0.0007 43.3 -0.1 46 35-89 1118-1169(1189)
208 COG3357 Predicted transcriptio 20.5 36 0.00079 32.6 0.2 10 77-86 77-86 (97)
209 COG1198 PriA Primosomal protei 20.5 45 0.00098 42.7 1.1 44 37-92 438-491 (730)
210 PRK15103 paraquat-inducible me 20.4 46 0.001 39.9 1.1 34 54-90 11-44 (419)
211 TIGR02556 cas_TM1802 CRISPR-as 20.4 56 0.0012 40.6 1.9 41 34-75 170-222 (555)
212 PRK12438 hypothetical protein; 20.3 2.2E+03 0.049 29.0 16.6 46 973-1018 259-304 (991)
213 cd00065 FYVE FYVE domain; Zinc 20.2 43 0.00094 28.2 0.6 38 34-74 2-39 (57)
214 PF04641 Rtf2: Rtf2 RING-finge 20.2 67 0.0015 35.9 2.3 51 32-88 111-162 (260)
No 1
>PLN02400 cellulose synthase
Probab=100.00 E-value=1.6e-310 Score=2746.30 Aligned_cols=1024 Identities=70% Similarity=1.267 Sum_probs=948.6
Q ss_pred CCCCccceecccCCceEEEEecCCC--CCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCC
Q 039060 1 MEASAGLVAGSHNRNELVVIHNHEE--PKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQV 78 (1040)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~ 78 (1040)
||+++|||||||||||||+|++|++ +||++++++|+||||||+||+|+|||+|||||||||||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 9999999999999999999998854 58999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhcccCCCCCCCCCCcccccchhcccccchh-hhhhhhhhhhccccccCCCCCCC-----CCCCCCCCcccCC
Q 039060 79 CPQCKTRYKRLKGSPRVEGDEDEEDIDDIEHEFNIEDE-KNKEKHVADMLHGKMSYGRGPDS-----DENSQFPPVIAGG 152 (1040)
Q Consensus 79 CpqCkt~Ykr~kg~p~v~gd~~e~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 152 (1040)
|||||||||||||||||+|||||||+||+||||||..+ +.++++++ |++.+- +..+++| +|++|
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~p-~lt~g 150 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKARHQWQ---------GEDIELSSSSRHESQPIP-LLTHG 150 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhcccccccccccccc---------ccCccccCcccccCCCCc-cccCC
Confidence 99999999999999999999999999999999999642 22222321 333221 1124577 99999
Q ss_pred CCCCCCCCCCCCCCCCCcccccCC------CCCccccCCCCCCCC----CccCCcCCCC--------cchhhhHHhhhhc
Q 039060 153 RSRPVSGEFPVGGYGHGDQMLSSS------LHKRVHPYPVSEPGS----ARWDERKEGG--------WKDRMDDWKMQQG 214 (1040)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~~~~~ 214 (1040)
|. ++||+++++++|+ . +.++ .|+||||+||+|+.+ ..+||+||++ ||||||+||.||+
T Consensus 151 ~~--~s~ei~~~~~~~~-~-~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~ 226 (1085)
T PLN02400 151 QP--VSGEIPCATPDNQ-S-VRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQD 226 (1085)
T ss_pred cc--cCCCCCCCCCccc-c-ccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHHhhhh
Confidence 85 7999998776664 2 3443 358999999999764 3399999977 9999999999996
Q ss_pred CC----------C--CC--CCCCCCccchhhhccCCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccchHH
Q 039060 215 NL----------G--PE--TDDANDPDMAMVDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDAIG 280 (1040)
Q Consensus 215 ~~----------~--~~--~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a~~ 280 (1040)
+. + ++ +++++++|+++||++++||+||+++++++|+|||++++++|+++++||+||++|++++++|
T Consensus 227 k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~ 306 (1085)
T PLN02400 227 KNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYG 306 (1085)
T ss_pred hhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHH
Confidence 21 1 12 1133467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCC
Q 039060 281 LWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMD 360 (1040)
Q Consensus 281 lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~d 360 (1040)
+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+|
T Consensus 307 ~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~D 386 (1085)
T PLN02400 307 LWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVD 386 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHH
Q 039060 361 YPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEF 440 (1040)
Q Consensus 361 YP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~ 440 (1040)
||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+||||||||
T Consensus 387 YP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~ 466 (1085)
T PLN02400 387 YPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEF 466 (1085)
T ss_pred ccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhH
Q 039060 441 KVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMN 520 (1040)
Q Consensus 441 k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALN 520 (1040)
|+|||+|+++++++|+++|+|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||
T Consensus 467 k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMN 546 (1085)
T PLN02400 467 KVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMN 546 (1085)
T ss_pred HHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhccccc
Q 039060 521 ALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLD 600 (1040)
Q Consensus 521 allrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gld 600 (1040)
+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|+|+|+++||||++|+|+|
T Consensus 547 aLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~Gld 626 (1085)
T PLN02400 547 ALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLD 626 (1085)
T ss_pred HHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccc---------c----CCccccCC-----
Q 039060 601 GIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHS---------A----NGENANLG----- 662 (1040)
Q Consensus 601 g~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~---------~----~~~~~~~~----- 662 (1040)
|+|||+|+||||+|||+||||++|+..+..... ...|++||+.|+++++++. + ..++++++
T Consensus 627 GlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1085)
T PLN02400 627 GIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEP-NIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEG 705 (1085)
T ss_pred cCCCccccccCcceeeeeeccCCCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999998765332111 2234557776655432210 0 12445544
Q ss_pred --CCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchH
Q 039060 663 --GMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDI 740 (1040)
Q Consensus 663 --~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~ 740 (1040)
+++++++.++++++++++||+|.+|++|++++.||.+...+++++++||++|+||+||++|+||+||||+|||+|||+
T Consensus 706 ~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~ 785 (1085)
T PLN02400 706 VEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDI 785 (1085)
T ss_pred cccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechH
Confidence 466788888999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccchhhhhhhhhhh
Q 039060 741 LTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLERFAYVNTTIYP 820 (1040)
Q Consensus 741 ~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QRL~Yl~~~ly~ 820 (1040)
.||++||++||||+|++|++++|.|+||+|+.++++||+|||+|++||+++++||+++|+. ++|+++|||+|+++++||
T Consensus 786 ~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~-~~L~l~QRL~Yl~~~~y~ 864 (1085)
T PLN02400 786 LTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYN-GRLKLLERLAYINTIVYP 864 (1085)
T ss_pred HHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccC-CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998999999999999999999999999999999999999998763 469999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhcccchhhHHHHHHHHHHHH
Q 039060 821 FTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVV 900 (1040)
Q Consensus 821 l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si~~wWrne~~W~I~~~sa~lfav~ 900 (1040)
++++|+++|+++|++||++|++++|.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|+||||++
T Consensus 865 ~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl 944 (1085)
T PLN02400 865 ITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVF 944 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCchhhHHHHHHHH
Q 039060 901 QGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFW 980 (1040)
Q Consensus 901 ~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g~~~w~~l~g~l~~~~W 980 (1040)
++++|+|++++++|.||+|..++++.++++|+|+|+++++|++|++++||+|+++|+++++++++++|+++++++||++|
T Consensus 945 ~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~w 1024 (1085)
T PLN02400 945 QGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIW 1024 (1085)
T ss_pred HHHHHHhcCCcccceecCCcccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 99999999999999999999875556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCC-cccccCCCC
Q 039060 981 VILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGP-ATTKCGINC 1040 (1040)
Q Consensus 981 vi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~-~~~~~~~~~ 1040 (1040)
|++|+|||+||||||++|+|+||++||++||++|+||||+|+||+++++|| ++++|||+|
T Consensus 1025 vvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1025 VIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 999999999999999999999999999999999999999999999999999 899999999
No 2
>PLN02436 cellulose synthase A
Probab=100.00 E-value=4.6e-308 Score=2714.30 Aligned_cols=1029 Identities=69% Similarity=1.273 Sum_probs=958.2
Q ss_pred CCCCccceecccCCceEEEEecCCC--CCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCC
Q 039060 1 MEASAGLVAGSHNRNELVVIHNHEE--PKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQV 78 (1040)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~ 78 (1040)
||+++|||||||||||||+|++|++ +|+++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 9999999999999999999999854 68999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhcccCCCCCCCCCCcccccchhcccccchhhhhhhhhhhhc-cccccCCCCCCCC---------C---CCCC
Q 039060 79 CPQCKTRYKRLKGSPRVEGDEDEEDIDDIEHEFNIEDEKNKEKHVADML-HGKMSYGRGPDSD---------E---NSQF 145 (1040)
Q Consensus 79 CpqCkt~Ykr~kg~p~v~gd~~e~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~---~~~~ 145 (1040)
|||||||||||||||||+||||||++||+||||||..++.++++++|+| |++|++|++.+.. . .+++
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQI 160 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCC
Confidence 9999999999999999999999999999999999975556678889999 9999999876521 1 1345
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCcccccCC---CCCccccCCCCCCCC----CccCCcCCCC--------cchhhhHHh
Q 039060 146 PPVIAGGRSRPVSGEFPVGGYGHGDQMLSSS---LHKRVHPYPVSEPGS----ARWDERKEGG--------WKDRMDDWK 210 (1040)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~ 210 (1040)
| ++++|| +++|++ .++|+ . +.++ .||||||+||.|++. ..+||+||++ ||||||+||
T Consensus 161 ~-~~~~~~---~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk 232 (1094)
T PLN02436 161 P-LLTYGE---EDVEIS--SDRHA-L-IVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWK 232 (1094)
T ss_pred c-ccccCc---ccCccC--Ccccc-c-ccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHH
Confidence 6 888888 478887 34454 2 3444 369999999999663 3499999976 999999999
Q ss_pred hhhcCC-----------CCC--CCCCCCccchhhhccCCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccc
Q 039060 211 MQQGNL-----------GPE--TDDANDPDMAMVDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHD 277 (1040)
Q Consensus 211 ~~~~~~-----------~~~--~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~ 277 (1040)
+||+++ +++ +++++++|++++|++++||+||+++++++++|||++++++|+++++||+||++|++.+
T Consensus 233 ~kq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~ 312 (1094)
T PLN02436 233 KKQNEKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVND 312 (1094)
T ss_pred hhhhhcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 999621 011 1233457888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 039060 278 AIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSIL 357 (1040)
Q Consensus 278 a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~l 357 (1040)
++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+|
T Consensus 313 a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiL 392 (1094)
T PLN02436 313 AYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSIL 392 (1094)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHH
Q 039060 358 AMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREY 437 (1040)
Q Consensus 358 a~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreY 437 (1040)
|+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||
T Consensus 393 A~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreY 472 (1094)
T PLN02436 393 AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREY 472 (1094)
T ss_pred hhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchh
Q 039060 438 EEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAG 517 (1040)
Q Consensus 438 ee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAG 517 (1040)
||||+|||+|+++++++|+++|.|+||++|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+|||
T Consensus 473 Ee~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAG 552 (1094)
T PLN02436 473 EEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAG 552 (1094)
T ss_pred HHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhh
Confidence 99999999999988999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhcc
Q 039060 518 AMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMR 597 (1040)
Q Consensus 518 ALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~ 597 (1040)
|||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+
T Consensus 553 AMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~ 632 (1094)
T PLN02436 553 AMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMK 632 (1094)
T ss_pred hhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccccccchhhhhhcCCCCCCCCCCCCCc----cCCCCCCCCccccccccccc----------CCccccCC-
Q 039060 598 GLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMV----SCDCCPCFGRRKKKYSKHSA----------NGENANLG- 662 (1040)
Q Consensus 598 gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~----~~~~~~c~~~~~~~~~~~~~----------~~~~~~~~- 662 (1040)
|+||+|||+|+||||+|||+||||++||...+.++.. ...|++||+.+++++++.++ ..++++++
T Consensus 633 GlDGlqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1094)
T PLN02436 633 GLDGIQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALEN 712 (1094)
T ss_pred ccccCCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999988765433321 11256688877654332210 12344333
Q ss_pred ------CCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccc
Q 039060 663 ------GMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSI 736 (1040)
Q Consensus 663 ------~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsv 736 (1040)
+++++++..+++++++++||+|.+|++|++++.||.+...+++++++||++|+||+||++|+||+||||+|||+
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSv 792 (1094)
T PLN02436 713 IEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSV 792 (1094)
T ss_pred cccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccce
Confidence 45668888899999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccchhhhhhh
Q 039060 737 TEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLERFAYVNT 816 (1040)
Q Consensus 737 TED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QRL~Yl~~ 816 (1040)
|||+.||++||++||||+||+|.++||.|+||+|+.+++.||+|||+|++||++++++|+|+|++ ++|+++|||+|+++
T Consensus 793 TEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~-~~L~l~QRL~Yl~~ 871 (1094)
T PLN02436 793 TEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYG-GGLKWLERFSYINS 871 (1094)
T ss_pred ecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhccc-ccCCHHHHHHHHHH
Confidence 99999999999999999999998989999999999999999999999999999999999998764 46999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhcccchhhHHHHHHHH
Q 039060 817 TIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSGVSIEEWWRNEQFWVIGGISAHL 896 (1040)
Q Consensus 817 ~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si~~wWrne~~W~I~~~sa~l 896 (1040)
++||++++|+++|+++|++||++|++++|.++.+++++|+++|+++++++++|++|+|+++++||||||||+|+++|+|+
T Consensus 872 ~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~L 951 (1094)
T PLN02436 872 VVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHL 951 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCchhhHHHH
Q 039060 897 FAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNGYQSWGPLFGKLF 976 (1040)
Q Consensus 897 fav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g~~~w~~l~g~l~ 976 (1040)
||++++++|+|++++++|.||+|..+ ++.++++|+|+|+++++|++|++++|++|+++|+++++++++++|+++++++|
T Consensus 952 favl~~iLKvLggs~~~F~VTsK~~d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~ 1030 (1094)
T PLN02436 952 FALFQGLLKVLAGVNTNFTVTSKAAD-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLF 1030 (1094)
T ss_pred HHHHHHHHHHhccCcccceecccccc-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 99999999999999999999999886 44678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCCcccccCCCC
Q 039060 977 FAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGPATTKCGINC 1040 (1040)
Q Consensus 977 ~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1040 (1040)
|++||++|+|||+||||||++|+||||++||++||++||||||+||||+++ +||++++|||+|
T Consensus 1031 ~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1031 FALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 999999999999999999999999999999999999999999999999999 999999999999
No 3
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.2e-303 Score=2679.66 Aligned_cols=1034 Identities=89% Similarity=1.506 Sum_probs=964.3
Q ss_pred CCCCccceecccCCceEEEEecCCCCCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCC
Q 039060 1 MEASAGLVAGSHNRNELVVIHNHEEPKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCP 80 (1040)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~Cp 80 (1040)
||+++||+||||||||||+|++|+..||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~Cp 80 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGHEEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCP 80 (1040)
T ss_pred CCcccccccccccccceeeeccccCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCc
Confidence 99999999999999999999988446899999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcccCCCCCCCCCCcccccchhcccccchhhhhhhhhhhhc-cccccCCCCCCCCC-CCCCCCcccCCCCCCCC
Q 039060 81 QCKTRYKRLKGSPRVEGDEDEEDIDDIEHEFNIEDEKNKEKHVADML-HGKMSYGRGPDSDE-NSQFPPVIAGGRSRPVS 158 (1040)
Q Consensus 81 qCkt~Ykr~kg~p~v~gd~~e~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (1040)
|||||||||||||||+|||||||+||+||||+|..++.++++++|+| |+++++|++.+... .+++| ++++||.++++
T Consensus 81 qCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (1040)
T PLN02189 81 QCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDENNQFPP-VITGVRSRPVS 159 (1040)
T ss_pred ccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCCCcCCCc-ccccCcccccc
Confidence 99999999999999999999999999999999976666678889998 99999999876332 34566 89999877889
Q ss_pred CCCCCCC---CCCCcccccCCCCCccccCCCCCCCCCccCCcCCCCcchhhhHHhhhhcCCCCCCCCCCCccchhhhccC
Q 039060 159 GEFPVGG---YGHGDQMLSSSLHKRVHPYPVSEPGSARWDERKEGGWKDRMDDWKMQQGNLGPETDDANDPDMAMVDEAR 235 (1040)
Q Consensus 159 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1040)
+|++..| ++|+ ++.+..||+|||+||.|.+.+.+||+||++||||||+||.||+..+.+ .+++++|++++++++
T Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~rv~~wk~~~~~~~~~-~~~~~~d~~~~~~~~ 236 (1040)
T PLN02189 160 GEFPIGSGYGHGEQ--MLSSSLHKRVHPYPVSEPGSAKWDEKKEGGWKERMDDWKMQQGNLGPD-PDDYDADMALIDEAR 236 (1040)
T ss_pred CCcCcccccccccc--ccCCcccCccCcccccCCCcccCCccccccHHHHHHHHHhhcccCCCC-CCCCchhhhhcccCC
Confidence 9998532 2343 234446899999999998878899999999999999999999632222 233467888889999
Q ss_pred CCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhh
Q 039060 236 QPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDAIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDR 315 (1040)
Q Consensus 236 ~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~dr 315 (1040)
+||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+||
T Consensus 237 ~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~dr 316 (1040)
T PLN02189 237 QPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDR 316 (1040)
T ss_pred CCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhh
Q 039060 316 LSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVP 395 (1040)
Q Consensus 316 L~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvP 395 (1040)
|++||++++++++||+|||||+|+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+|||
T Consensus 317 L~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvP 396 (1040)
T PLN02189 317 LSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVP 396 (1040)
T ss_pred HHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcc
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCC
Q 039060 396 FCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDH 475 (1040)
Q Consensus 396 FCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdH 475 (1040)
|||||||||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++|||++++||
T Consensus 397 FCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dH 476 (1040)
T PLN02189 397 FCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDH 476 (1040)
T ss_pred cccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH
Q 039060 476 PGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC 555 (1040)
Q Consensus 476 p~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1040)
|+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||++||+|||
T Consensus 477 p~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMC 556 (1040)
T PLN02189 477 PGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMC 556 (1040)
T ss_pred HHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhh
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCcc
Q 039060 556 FLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVS 635 (1040)
Q Consensus 556 ff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~ 635 (1040)
|||||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+.....+...+
T Consensus 557 fflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~ 636 (1040)
T PLN02189 557 FLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT 636 (1040)
T ss_pred hhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876544333323
Q ss_pred CCCCCCCCcccccccccc-cCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHh
Q 039060 636 CDCCPCFGRRKKKYSKHS-ANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHV 714 (1040)
Q Consensus 636 ~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v 714 (1040)
+.| +||..++++++.+. .......+++.+++++..+++++++++||+|.+|++|++.+.+|.+....++++++||++|
T Consensus 637 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V 715 (1040)
T PLN02189 637 CDC-CPCFGRRKKKHAKNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHV 715 (1040)
T ss_pred cch-hhhcccccccccccccccccccccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHh
Confidence 333 34444333211111 1112334556666777788899999999999999999999999988888899999999999
Q ss_pred ccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCC
Q 039060 715 ISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHS 794 (1040)
Q Consensus 715 ~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~ 794 (1040)
+||+||++|+||+||||.|||+|||+.||++||++||||+|++|++++|.|+||+|+.+++.||+|||+|++||+++++|
T Consensus 716 ~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~n 795 (1040)
T PLN02189 716 ISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHS 795 (1040)
T ss_pred hccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039060 795 PVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSG 874 (1040)
Q Consensus 795 PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG 874 (1040)
|+++|+++++|+++||++|+++++||++++|+++|+++|++||++|++++|.++++++.+|+++|+++++++++|++|+|
T Consensus 796 Pl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG 875 (1040)
T PLN02189 796 PLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSG 875 (1040)
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99988765679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHH
Q 039060 875 VSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVV 954 (1040)
Q Consensus 875 ~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv 954 (1040)
+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..+ ++.++++|+|+|++++||++||+++||+|++
T Consensus 876 ~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTsK~~~-d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv 954 (1040)
T PLN02189 876 VSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATD-DDEFGELYAFKWTTLLIPPTTLLIINIVGVV 954 (1040)
T ss_pred CcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceecccccc-ccccccceeecceeHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886 4567899999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCCccc
Q 039060 955 AGISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGPATT 1034 (1040)
Q Consensus 955 ~Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~ 1034 (1040)
+|+++++++++++|+++++++|+++|+++|+|||+||||||++|+|+||++||++|+++|+||||+|+||+++++||.++
T Consensus 955 ~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~ 1034 (1040)
T PLN02189 955 AGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVK 1034 (1040)
T ss_pred HHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhh
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 039060 1035 KCGINC 1040 (1040)
Q Consensus 1035 ~~~~~~ 1040 (1040)
+||++|
T Consensus 1035 ~~~~~~ 1040 (1040)
T PLN02189 1035 QCGINC 1040 (1040)
T ss_pred ccCcCC
Confidence 999999
No 4
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2.4e-299 Score=2648.50 Aligned_cols=1008 Identities=73% Similarity=1.280 Sum_probs=929.8
Q ss_pred cCCC--CCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCC
Q 039060 22 NHEE--PKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDE 99 (1040)
Q Consensus 22 ~~~~--~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~ 99 (1040)
.|++ +||++++++|+||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+|||
T Consensus 3 ~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDe 82 (1079)
T PLN02638 3 SEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDE 82 (1079)
T ss_pred CCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccc
Confidence 4554 58999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cccc-ccchhcccccch-hhhhhhhhhhhc-cccccCCCCCCCC--------CCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 039060 100 DEED-IDDIEHEFNIED-EKNKEKHVADML-HGKMSYGRGPDSD--------ENSQFPPVIAGGRSRPVSGEFPVGGYGH 168 (1040)
Q Consensus 100 ~e~~-~~d~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1040)
|||+ +||+||||+|.. ++.++++++|+| |++|++|+++|.. +.+++| +|++||. +++|+++.+++|
T Consensus 83 eed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--~~~~~~~~~~~~ 159 (1079)
T PLN02638 83 EEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIP-LLTNGQS--VSGELSAASPER 159 (1079)
T ss_pred cccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCc-ccccCcc--ccCccCCCCCcc
Confidence 8887 899999999953 445677888999 9999999986621 234566 8999985 689999766554
Q ss_pred CcccccCC--CCCccccCCCCCCC-----CCccCCcCCCC--------cchhhhHHhhhhcCC------------C---C
Q 039060 169 GDQMLSSS--LHKRVHPYPVSEPG-----SARWDERKEGG--------WKDRMDDWKMQQGNL------------G---P 218 (1040)
Q Consensus 169 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~~------------~---~ 218 (1040)
+ . +.++ .|||| ||.|+. .+.+||+||++ ||||||+||.||++. + .
T Consensus 160 ~-~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~ 234 (1079)
T PLN02638 160 L-S-MASPGAGGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGG 234 (1079)
T ss_pred c-c-ccCccccCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcC
Confidence 3 2 3333 47887 787754 23499999987 999999999999621 1 1
Q ss_pred C---CCCCCCccchhhhccCCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHH
Q 039060 219 E---TDDANDPDMAMVDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDAIGLWLISVICEIWFAIS 295 (1040)
Q Consensus 219 ~---~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~ 295 (1040)
+ +++++++|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~ 314 (1079)
T PLN02638 235 DIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALS 314 (1079)
T ss_pred CCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHH
Confidence 1 1122357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccccccchhhhhhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCC
Q 039060 296 WILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGA 375 (1040)
Q Consensus 296 wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~ 375 (1040)
|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+||.||||++|+|||||+||+|||+|||+|||||||+
T Consensus 315 Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGg 394 (1079)
T PLN02638 315 WILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGA 394 (1079)
T ss_pred HHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 039060 376 SIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIP 455 (1040)
Q Consensus 376 ~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp 455 (1040)
++||||||.|||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|
T Consensus 395 S~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p 474 (1079)
T PLN02638 395 AMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVP 474 (1079)
T ss_pred hHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEE
Q 039060 456 PEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFM 535 (1040)
Q Consensus 456 ~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~I 535 (1040)
+++|+|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||
T Consensus 475 ~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfI 554 (1079)
T PLN02638 475 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFL 554 (1079)
T ss_pred CccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchh
Q 039060 536 LNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFR 615 (1040)
Q Consensus 536 l~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfR 615 (1040)
||||||||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|++++|||++|+|+||+|||+||||||+||
T Consensus 555 LNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fR 634 (1079)
T PLN02638 555 LNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFN 634 (1079)
T ss_pred eecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCCCccCCCCCCCCccccccccc-c-------------cCCccccCC---------CCChhhHHHh
Q 039060 616 RQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKH-S-------------ANGENANLG---------GMDDDKELLM 672 (1040)
Q Consensus 616 R~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~-------------~~~~~~~~~---------~~~~~~~~~~ 672 (1040)
|+||||++||...+... ...+++||+..++++++. + ...++++++ .++++++.++
T Consensus 635 R~ALYG~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1079)
T PLN02638 635 RTALYGYEPPIKPKHKK--PGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLM 712 (1079)
T ss_pred ehhhcCcCCcccccccc--cccccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhh
Confidence 99999999987532111 111224565533321111 0 001233333 1345677788
Q ss_pred hhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcE
Q 039060 673 SQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWR 752 (1040)
Q Consensus 673 ~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWr 752 (1040)
++..++++||+|.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||+|||+|||+.||++||++|||
T Consensus 713 ~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWr 792 (1079)
T PLN02638 713 SQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWR 792 (1079)
T ss_pred hhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHH
Q 039060 753 SIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVL 832 (1040)
Q Consensus 753 svY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~ll 832 (1040)
|+|++|+++||.|+||+|+.+++.||+|||+|++||++++++|+++|++ ++|+++||++|+++++||++++|+++|+++
T Consensus 793 SvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~-~rL~l~QRL~Yl~~~~yp~~sip~liY~ll 871 (1079)
T PLN02638 793 SIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKWLERFAYVNTTIYPITSIPLLLYCTL 871 (1079)
T ss_pred EEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988889999999999999999999999999999999999998763 469999999999999999999999999999
Q ss_pred HHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCC
Q 039060 833 PAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDT 912 (1040)
Q Consensus 833 P~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~ 912 (1040)
|++||++|++++|+++++++++|+++|++++++++||++|+|+++++||||||||+|+++|+|+||++++++|+|+++++
T Consensus 872 P~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~ 951 (1079)
T PLN02638 872 PAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDT 951 (1079)
T ss_pred HHHHHHcCCccCCCccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcc
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039060 913 NFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGL 992 (1040)
Q Consensus 913 ~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL 992 (1040)
+|.||+|..+++++++++|+|+||+++||++||+++||+|+++|+++++++++++|+++++++||++||++|+|||+|||
T Consensus 952 ~F~VTsK~~d~~~~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl 1031 (1079)
T PLN02638 952 NFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1031 (1079)
T ss_pred cceeccccccccccccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876667899999999999999999999999999999999999899999999999999999999999999999
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCCcccccCCCC
Q 039060 993 MGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGPATTKCGINC 1040 (1040)
Q Consensus 993 ~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1040 (1040)
|||++|+||||++||++||++|+||||+|+||+++++||.+++||++|
T Consensus 1032 ~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1032 MGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred hccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 999999999999999999999999999999999999999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=3.4e-288 Score=2546.40 Aligned_cols=971 Identities=73% Similarity=1.314 Sum_probs=889.9
Q ss_pred CCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCC-CCcccccch
Q 039060 29 LKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGD-EDEEDIDDI 107 (1040)
Q Consensus 29 ~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd-~~e~~~~d~ 107 (1040)
-+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 567888999
Q ss_pred hcccccchhhhhhhhhhhhc-cccccCCCCCCCCC---CCCCCCcccCCCCCCCCCCCCCCCCCCCcccccCCCCCcccc
Q 039060 108 EHEFNIEDEKNKEKHVADML-HGKMSYGRGPDSDE---NSQFPPVIAGGRSRPVSGEFPVGGYGHGDQMLSSSLHKRVHP 183 (1040)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1040)
||||||...++. +.| |++|++|++.+... ++++| ++++ ++|++ +|
T Consensus 90 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~----~~--------------- 138 (1044)
T PLN02915 90 EDEFQIKSPQDH-----EPVHQNVFAGSENGDYNAQQWRPGGP-AFSS------TGSVA----GK--------------- 138 (1044)
T ss_pred hhhhcccccccc-----chhhhhhccCCCCccccccccCCCCc-cccC------CCCcC----CC---------------
Confidence 999998543221 125 88999988866321 13334 4443 12332 11
Q ss_pred CCCCCCCCCccCCcC----CCCcchhhhHHhhhhcCCC------CC-CCCCCCccchhhhccCCCceeEeeccCCCcchh
Q 039060 184 YPVSEPGSARWDERK----EGGWKDRMDDWKMQQGNLG------PE-TDDANDPDMAMVDEARQPLSRKVPIASSKINPY 252 (1040)
Q Consensus 184 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~y 252 (1040)
.+||+| +++||||||+||.||++.. ++ ++..+++|+++|+++++||+||+++++++++||
T Consensus 139 ---------~~~~~~~~~g~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~py 209 (1044)
T PLN02915 139 ---------DLEAEREGYGNAEWKDRVDKWKTRQEKRGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPY 209 (1044)
T ss_pred ---------CcCccccCcCCHHHHHHHHHHHhhhhhhccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhH
Confidence 234433 3559999999999996221 11 122335788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCCCCCCe
Q 039060 253 RMVIVARLVILAFFFRYRILNPVHDAIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLAPV 332 (1040)
Q Consensus 253 R~~~~~~l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~V 332 (1040)
|++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|
T Consensus 210 R~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~v 289 (1044)
T PLN02915 210 RIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPV 289 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccc
Q 039060 333 DIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFT 412 (1040)
Q Consensus 333 DV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs 412 (1040)
||||+|+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||+
T Consensus 290 DvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs 369 (1044)
T PLN02915 290 DVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFS 369 (1044)
T ss_pred eeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCC
Q 039060 413 LKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAE 492 (1040)
Q Consensus 413 ~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~ 492 (1040)
+|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|+|+||++|||+++||||+|||||++++|+.|.+
T Consensus 370 ~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~ 449 (1044)
T PLN02915 370 QKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVE 449 (1044)
T ss_pred cCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecC
Q 039060 493 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFP 572 (1040)
Q Consensus 493 ~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 572 (1040)
|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++||||||
T Consensus 450 g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFP 529 (1044)
T PLN02915 450 GKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFP 529 (1044)
T ss_pred cCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCC----ccCCCCCCCCccccc
Q 039060 573 QRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKM----VSCDCCPCFGRRKKK 648 (1040)
Q Consensus 573 Q~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~----~~~~~~~c~~~~~~~ 648 (1040)
|+|+|+|++|||+|+++||||++|+|+||+|||+|+||||+|||+||||++||...+.+.. ....|++||+.++++
T Consensus 530 QrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1044)
T PLN02915 530 QRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRG 609 (1044)
T ss_pred cccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCcccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999875443321 111244577766653
Q ss_pred cccccc-----------------------------------CCccccCC-------CCCh-hhHHHhhhhhHhhhcCcch
Q 039060 649 YSKHSA-----------------------------------NGENANLG-------GMDD-DKELLMSQMNFEKKFGQSA 685 (1040)
Q Consensus 649 ~~~~~~-----------------------------------~~~~~~~~-------~~~~-~~~~~~~~~~~~~~fG~s~ 685 (1040)
++..++ ..++++++ ++++ +++++++++.++++||+|.
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~ 689 (1044)
T PLN02915 610 KSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSP 689 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcCCcH
Confidence 322100 01233333 3444 7778899999999999999
Q ss_pred HHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccc
Q 039060 686 IFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKG 765 (1040)
Q Consensus 686 ~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G 765 (1040)
+|++|++++.+|.+...+++++++||++||||+||++|+||+||||.|||+|||+.||++||++||||+|++|++++|.|
T Consensus 690 ~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~G 769 (1044)
T PLN02915 690 VFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKG 769 (1044)
T ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999998899999
Q ss_pred cCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccc
Q 039060 766 SAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMP 845 (1040)
Q Consensus 766 ~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip 845 (1040)
+||+|+.++++||+|||+|++||++++++|+|+++ +++|+++||++|+++++||++++|+++|+++|++||++|++++|
T Consensus 770 lAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~-~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P 848 (1044)
T PLN02915 770 SAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAY-GGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIP 848 (1044)
T ss_pred cCCCCHHHHHHHHHHHhhhHHHHHHhccCCccccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 99999999999999999999999999999999765 35699999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCcc-
Q 039060 846 EISTFASLFFIALFISIFTTGILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDED- 924 (1040)
Q Consensus 846 ~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~- 924 (1040)
.++.+.+++|+++|++++++++++++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|+||+|+.+++
T Consensus 849 ~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~ 928 (1044)
T PLN02915 849 TLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDEA 928 (1044)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCccccch
Confidence 9888778889999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred ccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHH
Q 039060 925 EEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTIVV 1004 (1040)
Q Consensus 925 ~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~ 1004 (1040)
++++++|+|+||++++|++|++++|++|+++|++++++++++.|+++++++|+++|+++|+|||++|||||++|+|+||+
T Consensus 929 d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~ 1008 (1044)
T PLN02915 929 DEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVV 1008 (1044)
T ss_pred hhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeeh
Confidence 34679999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhheeeccCCccCCCCcccccCCCC
Q 039060 1005 IWSILLASIFSLLWVRIDPFVMKTKGPATTKCGINC 1040 (1040)
Q Consensus 1005 ~~s~~la~~f~~l~v~i~~~~~~~~~~~~~~~~~~~ 1040 (1040)
+||++||++|+||||+||||+++++||++++|||+|
T Consensus 1009 v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 1009 LWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=6.2e-277 Score=2438.34 Aligned_cols=947 Identities=68% Similarity=1.238 Sum_probs=866.2
Q ss_pred CCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCCCcccccchhcc
Q 039060 31 NLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDEDEEDIDDIEHE 110 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~e~~~~d~~~~ 110 (1040)
++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||| |||++||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 568999999999999999999999999999999999999999999999999999998 57778999999
Q ss_pred cccchhhhhhhhhhhhccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccCCCCCccccCCCCCCC
Q 039060 111 FNIEDEKNKEKHVADMLHGKMSYGRGPDSDENSQFPPVIAGGRSRPVSGEFPVGGYGHGDQMLSSSLHKRVHPYPVSEPG 190 (1040)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1040)
|+- +++++ .+++++|++.+ .+.+++| ++++ +++|++
T Consensus 71 ~~~-----~~~~~----~~~~~~~~~~~-~~~~~~~-~~~~-----~~~~~~---------------------------- 106 (977)
T PLN02195 71 HSR-----NQSTM----ASHLNDTQDVG-IHARHIS-SVST-----VDSELN---------------------------- 106 (977)
T ss_pred hcc-----chhhh----hhhcccCcCCC-CCCcccc-cccc-----CCCccc----------------------------
Confidence 842 12332 35677766543 1112233 3332 112221
Q ss_pred CCccCCcCCCCcchhhhHHhhhhcCC------CC----C-CCCCCCccchhhhccCCCceeEeeccCCCcchhHHHHHHH
Q 039060 191 SARWDERKEGGWKDRMDDWKMQQGNL------GP----E-TDDANDPDMAMVDEARQPLSRKVPIASSKINPYRMVIVAR 259 (1040)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~yR~~~~~~ 259 (1040)
|+.++++||||||+||.||+++ +. + +++++++|+++ ||.++||+||+++++++++|||++++++
T Consensus 107 ----~~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pL~~~~~i~~~~~~pyR~~~~~~ 181 (977)
T PLN02195 107 ----DEYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPS-ADAYEPLSRVIPIPRNKLTPYRAVIIMR 181 (977)
T ss_pred ----CccCCHHHHHHHHHHHHhhhhhccccccccccccCCCCccCCccccc-ccccCCceEEEecCcccchhHHHHHHHH
Confidence 3344566999999999999621 11 1 12334578885 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCCCCCCeEEEEecC
Q 039060 260 LVILAFFFRYRILNPVHDAIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLAPVDIFVSTV 339 (1040)
Q Consensus 260 l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDV~V~t~ 339 (1040)
|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++++++++||+|||||+|+
T Consensus 182 l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TA 261 (977)
T PLN02195 182 LIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTV 261 (977)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccccccccccccc
Q 039060 340 DPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFTLKVDYLK 419 (1040)
Q Consensus 340 nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs~k~d~~~ 419 (1040)
||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||++|.|+++
T Consensus 262 DP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~ 341 (977)
T PLN02195 262 DPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLK 341 (977)
T ss_pred CcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCCCCCcCcE
Q 039060 420 DKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAEGNELPRL 499 (1040)
Q Consensus 420 ~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~~~lP~l 499 (1040)
++.+|+|++|||+|||||||||+|||+|+++++++|+++|+|+||++|||++++|||+|||||++++|+.|.+|++||+|
T Consensus 342 ~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~L 421 (977)
T PLN02195 342 DKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGARDIEGNELPRL 421 (977)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCCCCcccccccCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred EEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCC
Q 039060 500 VYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGID 579 (1040)
Q Consensus 500 vYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid 579 (1040)
|||||||||||+||+||||||+++||||++||||||||||||||+|||++||+|||||+||+.|+++|||||||+|+|+|
T Consensus 422 VYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~i~ 501 (977)
T PLN02195 422 VYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDGID 501 (977)
T ss_pred EEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCC-CCCCCcccccccccc-----
Q 039060 580 RHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDC-CPCFGRRKKKYSKHS----- 653 (1040)
Q Consensus 580 ~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~----- 653 (1040)
++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+.....++. ++.| ++||+.+++.....+
T Consensus 502 ~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (977)
T PLN02195 502 RSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKS-SSSSSSCCCPTKKKPEQDPSEIYRD 580 (977)
T ss_pred CCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccc-ccccccccccccccccccchhhccc
Confidence 999999999999999999999999999999999999999999998775443332 2222 234554433221110
Q ss_pred -c----CCccccCCC---C-ChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCc
Q 039060 654 -A----NGENANLGG---M-DDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTE 724 (1040)
Q Consensus 654 -~----~~~~~~~~~---~-~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~ 724 (1040)
+ ..+++.++. + +++++.++++++++++||+|.+|++|++.+.+|.+...+++++++||++|+||+||++|+
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~ 660 (977)
T PLN02195 581 AKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTE 660 (977)
T ss_pred cccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhcccCccccc
Confidence 0 012333332 2 236677888999999999999999999999999988888999999999999999999999
Q ss_pred cccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCC
Q 039060 725 WGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGN 804 (1040)
Q Consensus 725 WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~ 804 (1040)
||+||||.|||+|||+.||++||++||||+|++|.+++|.|+||+|+.+++.||+|||+|++||+++++||+++|+++++
T Consensus 661 WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~ 740 (977)
T PLN02195 661 WGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGR 740 (977)
T ss_pred hhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhhhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999998876678
Q ss_pred CCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhccc
Q 039060 805 LRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSGVSIEEWWRNE 884 (1040)
Q Consensus 805 L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si~~wWrne 884 (1040)
|+++||++|+++++||++++|+++|+++|++||++|++++|+++++++++|+++|+++++++++|++|+|+++++|||||
T Consensus 741 L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnq 820 (977)
T PLN02195 741 LKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNE 820 (977)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcC
Q 039060 885 QFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNG 964 (1040)
Q Consensus 885 ~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g 964 (1040)
|||+|+++|+||||++++++|+|++++++|.||+|..+ +++++++|+|+||+++||++|++++||+|+++|++++++++
T Consensus 821 q~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~ 899 (977)
T PLN02195 821 QFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYMVKWTTLLIPPTSLLIINLVGVVAGFSDALNKG 899 (977)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhcceeccceehhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999886 55688999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCCc-cccc-CCCC
Q 039060 965 YQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGPA-TTKC-GINC 1040 (1040)
Q Consensus 965 ~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~-~~~~-~~~~ 1040 (1040)
+++|+++++++|+++|+++|+|||+||||||++|+|+||++||++||++||||||+||||+++++||+ +++| |++|
T Consensus 900 ~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 900 YEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.3e-245 Score=2179.46 Aligned_cols=949 Identities=50% Similarity=0.938 Sum_probs=825.7
Q ss_pred CccceecccC---CceEE--EEecCCCCCCCCCCCCccccc--ccccccccCCCCeeecCCCCCCCcccchhHHHHhhCC
Q 039060 4 SAGLVAGSHN---RNELV--VIHNHEEPKPLKNLDAQVCEI--CGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT 76 (1040)
Q Consensus 4 ~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~c~i--Cg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~ 76 (1040)
+++||||+|| |+|+| +|+++.+|+++++.+++.|.+ |+.+++.+++|++..+| ||+|.|||+||-++.++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6889999999 99999 899988999999999999998 99999999999999999 999999999999999996
Q ss_pred CCCCCChhhhhcccCCCCCCCCCCcccccchhcccccchhhhhhhhh--hhhccccccCCCCCCCCCCCCCCCcccCCCC
Q 039060 77 QVCPQCKTRYKRLKGSPRVEGDEDEEDIDDIEHEFNIEDEKNKEKHV--ADMLHGKMSYGRGPDSDENSQFPPVIAGGRS 154 (1040)
Q Consensus 77 ~~CpqCkt~Ykr~kg~p~v~gd~~e~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1040)
+.||+||++||.+ |+++++ +|.+.+ .-+.+. ...|..+++. ..-++.++.+|
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~- 220 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PDESSG-------ALPLPPPGGSKMDRRLSL---------MKSNSLLMRSQ- 220 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cccccc-------cccCCCCCCccccccccc---------ccccchhccCC-
Confidence 7999999999775 332222 221111 100110 0001111111 00122455666
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCccccCCCCCCCCCccCCcCCCCcchhhhHHhhhhcCCCCCCCCCCCccchhhhcc
Q 039060 155 RPVSGEFPVGGYGHGDQMLSSSLHKRVHPYPVSEPGSARWDERKEGGWKDRMDDWKMQQGNLGPETDDANDPDMAMVDEA 234 (1040)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1040)
+|||| |++| +++++|+ |+|+| ++ |++- +..+.++++ .....+||++
T Consensus 221 ---~~~~~-----~~~w-~~~~~~~----~~~~~----~~-------~~~~--------~~~~~~~~~--~~~~~~~~~~ 266 (1135)
T PLN02248 221 ---TGDFD-----HNRW-LFETKGT----YGYGN----AV-------WPKD--------DGYGDDGGG--GGPGEFMDKP 266 (1135)
T ss_pred ---CCCCC-----Ccee-eeecccc----ccccc----cc-------Cccc--------cccCCCCCc--cccccccccC
Confidence 69998 9999 8999998 89988 34 7721 011111111 1122579999
Q ss_pred CCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhh
Q 039060 235 RQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDAIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLD 314 (1040)
Q Consensus 235 ~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~d 314 (1040)
|+||+||+++++++++|||++++++|+++++||+||++|++.++.|+|+++++||+||+|+|+|+|++||+||+|.||+|
T Consensus 267 ~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~ 346 (1135)
T PLN02248 267 WRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLA 346 (1135)
T ss_pred CCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccccCHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hhhhhhccCC-----CCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHH
Q 039060 315 RLSFRYEREG-----EPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEF 389 (1040)
Q Consensus 315 rL~~r~~~~~-----~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~f 389 (1040)
||++||+.|+ ++++||.|||||+|+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|
T Consensus 347 rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa~F 426 (1135)
T PLN02248 347 VLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAASF 426 (1135)
T ss_pred HHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHHHH
Confidence 9999998643 35789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Q 039060 390 ARKWVPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAR------------------- 450 (1040)
Q Consensus 390 A~~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k------------------- 450 (1040)
||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++.
T Consensus 427 A~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~ 506 (1135)
T PLN02248 427 ARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIKAKKK 506 (1135)
T ss_pred HHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999641
Q ss_pred -----------hcCCCCCCccCCCCCCCCCCC--------CCCCccceeeeccCCC------------CCCC--CCCCcC
Q 039060 451 -----------ASKIPPEGWIMPDGTPWPGNN--------TRDHPGMIQVFLGQSG------------GHDA--EGNELP 497 (1040)
Q Consensus 451 -----------~~~vp~e~w~m~dg~~w~g~~--------~rdHp~iiqv~l~~~g------------~~d~--~~~~lP 497 (1040)
.+++|+++| |+|||+|||++ ++|||+|||||+++++ ..|. .+.+||
T Consensus 507 ~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP 585 (1135)
T PLN02248 507 QRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVDIRLP 585 (1135)
T ss_pred hhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccccccc
Confidence 246789999 99999999984 5699999999998754 1122 244899
Q ss_pred cEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccC
Q 039060 498 RLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDG 577 (1040)
Q Consensus 498 ~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1040)
+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||+|+|
T Consensus 586 ~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~ 664 (1135)
T PLN02248 586 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQRFEG 664 (1135)
T ss_pred eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred CCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCc
Q 039060 578 IDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGE 657 (1040)
Q Consensus 578 id~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 657 (1040)
+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|++.+.... .|++||+.++++++.......
T Consensus 665 I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 740 (1135)
T PLN02248 665 IDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSG----CFGSCKFTKKKKKETSASEPE 740 (1135)
T ss_pred CCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccccc----ccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999987543322 244455544432221111100
Q ss_pred cccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhh-hhCCCCC-------------------CCCchhHHHHHHHhccc
Q 039060 658 NANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLM-EQGGVPP-------------------SSSPASLLKEAIHVISC 717 (1040)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~-e~GG~~~-------------------~~~~~~~~~~a~~v~sC 717 (1040)
.++..+++. .++.+.++++||+|..|++|+.. +..|.+. ....+++++||++|+||
T Consensus 741 --~~~~~~~~~--~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC 816 (1135)
T PLN02248 741 --EQPDLEDDD--DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISC 816 (1135)
T ss_pred --ccccccccc--hhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhccc
Confidence 111111111 14567889999999999999953 2232221 12356899999999999
Q ss_pred cccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCccc
Q 039060 718 GYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVW 797 (1040)
Q Consensus 718 ~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~ 797 (1040)
+||++|+||+||||.|+|+|||+.||++||++||||+||++++++|.|++|+|+.++++||+|||+|++||++++++|++
T Consensus 817 ~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll 896 (1135)
T PLN02248 817 WYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALL 896 (1135)
T ss_pred ccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCccc
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhcCccc
Q 039060 798 YGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWSGVSI 877 (1040)
Q Consensus 798 ~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rwsG~si 877 (1040)
+ +++|++.||++|+++++||++++++++|+++|++||++|++++|+.+..++++++.+++++++++++|++|+|+++
T Consensus 897 ~---~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl 973 (1135)
T PLN02248 897 A---SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLCLLAVLEIKWSGITL 973 (1135)
T ss_pred c---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhhccccH
Confidence 5 3579999999999999999999999999999999999999999987655555555667888999999999999999
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCcc--ccccceeeeccccchHHHHHHHHHHHHHHHH
Q 039060 878 EEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDED--EEFGELYSFKWTTLLIPPTTVLIINLVGVVA 955 (1040)
Q Consensus 878 ~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~--~~~~~ly~f~ws~L~iP~~tLlllnliaiv~ 955 (1040)
++||||||||+|++++++++|++++++|+|++++++|.||+|+.+++ +.++++|+|+|+++++|+++++++|++|+++
T Consensus 974 ~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivv 1053 (1135)
T PLN02248 974 EEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLYIVKWTSLMIPPITIMMVNLIAIAV 1053 (1135)
T ss_pred HHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchheecCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987643 2478999999999999999999999999999
Q ss_pred HHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCcc
Q 039060 956 GISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMK 1027 (1040)
Q Consensus 956 Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~ 1027 (1040)
|++|++.++++.|+.+++++||++|+++|+|||+||||||++|+|+||++||++|+++++||||+|+||+..
T Consensus 1054 Gv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1054 GVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheEeccccCc
Confidence 999999887888999999999999999999999999999999999999999999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.2e-212 Score=1850.09 Aligned_cols=701 Identities=69% Similarity=1.270 Sum_probs=667.4
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccccc
Q 039060 332 VDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYF 411 (1040)
Q Consensus 332 VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YF 411 (1040)
|||||+|+||.||||++|+|||+|+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCC
Q 039060 412 TLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDA 491 (1040)
Q Consensus 412 s~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~ 491 (1040)
+++.|+++++.+|+|++|||+|||||||||+|||+++++.+++|+++|+|+||++|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEec
Q 039060 492 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQF 571 (1040)
Q Consensus 492 ~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~ 571 (1040)
+|++||+||||||||||+|+||+||||||+|+||||++||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccc
Q 039060 572 PQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSK 651 (1040)
Q Consensus 572 PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 651 (1040)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+.... ++.|++||++++|+++.
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~-~~~~~~~c~~~~k~~~~ 319 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEK-TCCCCSCCFGRRKKKKS 319 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCc-ceeeeecccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999987776554 33444444444443322
Q ss_pred -cc----------cCCccccCCC-------CChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHH
Q 039060 652 -HS----------ANGENANLGG-------MDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIH 713 (1040)
Q Consensus 652 -~~----------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~ 713 (1040)
.+ ...+++++++ .+++++..+++++|+++||+|++|++|+..+.|+.+.+.+++++++||++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~ 399 (720)
T PF03552_consen 320 KKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIH 399 (720)
T ss_pred cccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 11 1135666663 44578888999999999999999999999999999999999999999999
Q ss_pred hccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcC
Q 039060 714 VISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRH 793 (1040)
Q Consensus 714 v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~ 793 (1040)
|+||+||++|+|||||||.|||+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||+++||
T Consensus 400 V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~ 479 (720)
T PF03552_consen 400 VASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRH 479 (720)
T ss_pred HhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 039060 794 SPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRWS 873 (1040)
Q Consensus 794 ~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rws 873 (1040)
||+|+|+. ++|+++||++|++.++|+++|+|+++|+++|++||++|++++|++++.++++|+++|+++++++++|++|+
T Consensus 480 ~Pl~~g~~-~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ws 558 (720)
T PF03552_consen 480 CPLWYGYG-GRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWS 558 (720)
T ss_pred CchhccCC-CCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhc
Confidence 99998764 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCc-cccccceeeeccccchHHHHHHHHHHHHH
Q 039060 874 GVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDE-DEEFGELYSFKWTTLLIPPTTVLIINLVG 952 (1040)
Q Consensus 874 G~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~-~~~~~~ly~f~ws~L~iP~~tLlllnlia 952 (1040)
|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..++ +++++++|.|+|+++++|++||+++||+|
T Consensus 559 G~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNLva 638 (720)
T PF03552_consen 559 GVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNLVA 638 (720)
T ss_pred cCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999763 44578999999999999999999999999
Q ss_pred HHHHHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhheeeccCCccCCCCc
Q 039060 953 VVAGISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLWVRIDPFVMKTKGPA 1032 (1040)
Q Consensus 953 iv~Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~v~i~~~~~~~~~~~ 1032 (1040)
+++|+++++++++++|+++++++|+++||++|+|||+||||||++|+|+||++||++||++|+||||+||||++|++||+
T Consensus 639 ~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~~~ 718 (720)
T PF03552_consen 639 FVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTGPD 718 (720)
T ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 039060 1033 TT 1034 (1040)
Q Consensus 1033 ~~ 1034 (1040)
++
T Consensus 719 ~~ 720 (720)
T PF03552_consen 719 LK 720 (720)
T ss_pred CC
Confidence 75
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=5.1e-198 Score=1729.67 Aligned_cols=726 Identities=34% Similarity=0.636 Sum_probs=656.8
Q ss_pred cCCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhhcCccccccccchh
Q 039060 234 ARQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDAIGLWLISVICEIWFAISWILDQFPKWFPIDRETYL 313 (1040)
Q Consensus 234 ~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 313 (1040)
+.+||+++++++.+. ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.+++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999985 899999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhh
Q 039060 314 DRLSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKW 393 (1040)
Q Consensus 314 drL~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~W 393 (1040)
|||++|++ +||+|||||+||||.||||++|+|||+|+||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCC--CCCCCCC
Q 039060 394 VPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDG--TPWPGNN 471 (1040)
Q Consensus 394 vPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg--~~w~g~~ 471 (1040)
|||||||||||||||+||+++.+ ++..++|++|||+|||||||||+||+++. +...|.+.++ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33458999999999999999999999864 3466777655 6899999
Q ss_pred CCCCccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHH
Q 039060 472 TRDHPGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVR 551 (1040)
Q Consensus 472 ~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr 551 (1040)
++|||+||||+++++|+ +.++++||+||||||||||+|+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 44789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC-CCceEEEecCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCC
Q 039060 552 ESMCFLMDPQT-GRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKR 630 (1040)
Q Consensus 552 ~amcff~Dp~~-g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~ 630 (1040)
+||||||||+. ++++|||||||+|+ |+|+|++++||+++|+|+||+|||+|+||||+|||+||||++||.....
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 99999999874 45899999999998 7899999999999999999999999999999999999999988754332
Q ss_pred CCCccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCC-CCCchhHHH
Q 039060 631 PKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPP-SSSPASLLK 709 (1040)
Q Consensus 631 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~-~~~~~~~~~ 709 (1040)
....+ .. +++ ..+..+++++||+|+.|++|++.+..+.+. ..+.+++++
T Consensus 382 ~~~~~----------------------------~~-~~~-~~~~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~ 431 (756)
T PLN02190 382 GSLSS----------------------------VA-TRE-FLAEDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTNSIE 431 (756)
T ss_pred ccccc----------------------------cc-ccc-ccchhhhhhhcCCcHHHHHHHHHHhccCCCCccchHHHHH
Confidence 11000 00 111 234566789999999999999876644332 334578999
Q ss_pred HHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHH
Q 039060 710 EAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIF 789 (1040)
Q Consensus 710 ~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil 789 (1040)
||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+++++||.|.+|+++.++++||+||+.|++||+
T Consensus 432 eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~ 511 (756)
T PLN02190 432 AAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVL 511 (756)
T ss_pred HHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 039060 790 FSRHSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILE 869 (1040)
Q Consensus 790 ~sk~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe 869 (1040)
++++||+++++ .++|++.||++|++.++ |++++|+++|+++|++||++|++++|+. +++.+++++++++++++++|
T Consensus 512 fsr~nPl~~g~-~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~~~~~~~~l~~~~~~~~l~E 587 (756)
T PLN02190 512 FNKQSPLIGMF-CRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--VYLGIIVTLVGMHCLYTLWE 587 (756)
T ss_pred HhcCCCceecc-CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--cHHHHHHHHHHHHHHHHHHH
Confidence 99999999754 35699999999999988 9999999999999999999999999975 45677888899999999999
Q ss_pred hhhcCccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCC-------------c-ccc--ccceeee
Q 039060 870 LRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATD-------------E-DEE--FGELYSF 933 (1040)
Q Consensus 870 ~rwsG~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~-------------~-~~~--~~~ly~f 933 (1040)
++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|+||+|..+ + ++. .+++|+|
T Consensus 588 ~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f 667 (756)
T PLN02190 588 FMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEF 667 (756)
T ss_pred HHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccccccccccchhhhcceeEe
Confidence 99999999999999999999999999999999999999999999999999643 1 111 2688999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHh---cCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCC-CCcchhHHHHHHH
Q 039060 934 KWTTLLIPPTTVLIINLVGVVAGISDAIN---NGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQ-NRTPTIVVIWSIL 1009 (1040)
Q Consensus 934 ~ws~L~iP~~tLlllnliaiv~Gi~~~i~---~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~-~r~P~~v~~~s~~ 1009 (1040)
+|+++++|++|++++|++|+++|+++++. +..+.|+. ++++|+++|+++|+|||+||||+|+ +|+|++|+++|++
T Consensus 668 ~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~s~~ 746 (756)
T PLN02190 668 DGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSKAAF 746 (756)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Confidence 99999999999999999999988876643 33344554 5999999999999999999999765 5999999999999
Q ss_pred HHHHHHHhhe
Q 039060 1010 LASIFSLLWV 1019 (1040)
Q Consensus 1010 la~~f~~l~v 1019 (1040)
|+.+|+++.|
T Consensus 747 l~~~f~~~~~ 756 (756)
T PLN02190 747 LAVLFVVFSV 756 (756)
T ss_pred HHHHHHhccC
Confidence 9999999875
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=2.6e-189 Score=1664.23 Aligned_cols=707 Identities=37% Similarity=0.699 Sum_probs=651.0
Q ss_pred ccCCCceeEeeccCCCcchhHHHHHHHHHHHHHHHHHHhhcCccch-HHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Q 039060 233 EARQPLSRKVPIASSKINPYRMVIVARLVILAFFFRYRILNPVHDA-IGLWLISVICEIWFAISWILDQFPKWFPIDRET 311 (1040)
Q Consensus 233 ~~~~pl~~~~~~~~~~~~~yR~~~~~~l~~l~~~l~wR~~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~ 311 (1040)
...+||+++++++++. +||+++++++++++++|+||+++.+.+. .|+|+++++||+||+|+|+|+|++||+||+|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3567999999999885 6999999999999999999999977655 789999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhh
Q 039060 312 YLDRLSFRYEREGEPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFAR 391 (1040)
Q Consensus 312 ~~drL~~r~~~~~~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~ 391 (1040)
|+|||+++++ .++||+|||||+|+||.||||++|+|||+|+||+|||+|||+|||||||+++||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997664 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCC-----CC
Q 039060 392 KWVPFCKKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDG-----TP 466 (1040)
Q Consensus 392 ~WvPFCkk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg-----~~ 466 (1040)
+||||||||+|||||||+||+++. ++|++||++||+||||||+|||+++++ +++|++ |.|.++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999983 467899999999999999999999976 888877 555443 68
Q ss_pred CCCCC-CCCCccceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCC
Q 039060 467 WPGNN-TRDHPGMIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVN 545 (1040)
Q Consensus 467 w~g~~-~rdHp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~ 545 (1040)
|+++. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++||||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98765 78999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCC
Q 039060 546 NSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPP 625 (1040)
Q Consensus 546 ~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~ 625 (1040)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998431
Q ss_pred CCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCch
Q 039060 626 KGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPA 705 (1040)
Q Consensus 626 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~ 705 (1040)
.... + ...+++ .++...+...+
T Consensus 393 ~~~~-------------------------------------~----------~~~~~~-----------~~~~~~~~~~~ 414 (734)
T PLN02893 393 LILP-------------------------------------E----------IPELNP-----------DHLVDKSIKSQ 414 (734)
T ss_pred ccch-------------------------------------h----------hhhccc-----------ccccccccchH
Confidence 1000 0 000111 11223344567
Q ss_pred hHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccc
Q 039060 706 SLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGS 785 (1040)
Q Consensus 706 ~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~ 785 (1040)
+++++|++|+||.||++|+||+||||.|+|+|||+.||++||++||||+|+++++++|.|++|+|+.++++||+|||+|+
T Consensus 415 ~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~ 494 (734)
T PLN02893 415 EVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGL 494 (734)
T ss_pred HHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred hhHHhhcCCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHH
Q 039060 786 VEIFFSRHSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTT 865 (1040)
Q Consensus 786 lQil~sk~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~ 865 (1040)
+||+++++||+++|. ++|++.||++|++.++||++++|+++|+++|++||++|++++|+.+.++++++++++++++++
T Consensus 495 lqI~~s~~nPl~~g~--~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~ 572 (734)
T PLN02893 495 LEVAFSKYSPITFGV--KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQ 572 (734)
T ss_pred HHHHhhccCchhhcc--cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999754 469999999999999999999999999999999999999999999888888888999999999
Q ss_pred HHHHhhhcCccchhhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCcccc--c-cceeeecc-ccchHH
Q 039060 866 GILELRWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEE--F-GELYSFKW-TTLLIP 941 (1040)
Q Consensus 866 ~lLe~rwsG~si~~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~--~-~~ly~f~w-s~L~iP 941 (1040)
+++|++|+|.++++|||+||||+|.++++++||++++++|.|++++.+|+||+|+.+++.. + .++|+|+| +++++|
T Consensus 573 ~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~~~y~~~~f~f~~~spl~ip 652 (734)
T PLN02893 573 DLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLP 652 (734)
T ss_pred HHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccccccccccceeeecccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999764322 2 48999995 889999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCC--CcchhHHHHHHHHHHHHHHh
Q 039060 942 PTTVLIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLMGRQN--RTPTIVVIWSILLASIFSLL 1017 (1040)
Q Consensus 942 ~~tLlllnliaiv~Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~--r~P~~v~~~s~~la~~f~~l 1017 (1040)
+++++++|++|+++|+++++.+ ..|+.+++++|+++|+++|+|||++||++|++ |+|++|++||++||.+++++
T Consensus 653 ~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 653 LTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 35788899999999999999999999999986 99999999999999888764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=5.4e-67 Score=636.55 Aligned_cols=495 Identities=26% Similarity=0.416 Sum_probs=388.9
Q ss_pred HHH-HHHHHHHHHHHHHHHhhcCccch----HHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCC
Q 039060 253 RMV-IVARLVILAFFFRYRILNPVHDA----IGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPN 327 (1040)
Q Consensus 253 R~~-~~~~l~~l~~~l~wR~~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~ 327 (1040)
|++ +++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|... +.+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 554 45555567899999999876632 3356778999999999999988888888877642 1233457
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCc
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAP 407 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~P 407 (1040)
.+|+|||+||+|| |++.++++|+.+++++|||.++++|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 8999999999999 9999999999999999999999999999999988543211111
Q ss_pred ccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCC
Q 039060 408 EMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSG 487 (1040)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 487 (1040)
+.+. ++..+++ .+++++
T Consensus 185 -------------------~~~~---~~~~~~~----~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QAEA---AQRREEL----KEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hhhh---hhhHHHH----HHHHHH-------------------------------------
Confidence 0000 0001122 223321
Q ss_pred CCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCce
Q 039060 488 GHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRKV 566 (1040)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~v 566 (1040)
.++.|++|++ |+|+||||||++++. ++||||+++|||++ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 0278999988 788999999999996 68999999999999 6999999999988 588 89
Q ss_pred EEEecCccccCCCch-------hhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCC
Q 039060 567 CYVQFPQRFDGIDRH-------DRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCC 639 (1040)
Q Consensus 567 a~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 639 (1040)
++||+||.|+|.|+. +++.+++..||..+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34567788999999999999999999999999999888
Q ss_pred CCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccc
Q 039060 640 PCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGY 719 (1040)
Q Consensus 640 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~Y 719 (1040)
+++||+++
T Consensus 320 -----------------------------------------------------~~iGGf~~------------------- 327 (713)
T TIGR03030 320 -----------------------------------------------------DEIGGIAG------------------- 327 (713)
T ss_pred -----------------------------------------------------HHcCCCCC-------------------
Confidence 46787654
Q ss_pred cccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCccccc
Q 039060 720 EDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYG 799 (1040)
Q Consensus 720 E~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g 799 (1040)
++++||++++++|+++||+++|+++.. +.|++|+|++++++||.||++|++|+++.+ +|++
T Consensus 328 --------------~~vtED~~l~~rL~~~G~~~~y~~~~~--~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~~-~pl~-- 388 (713)
T TIGR03030 328 --------------ETVTEDAETALKLHRRGWNSAYLDRPL--IAGLAPETLSGHIGQRIRWAQGMMQIFRLD-NPLL-- 388 (713)
T ss_pred --------------CCcCcHHHHHHHHHHcCCeEEEecccc--ccccCCCCHHHHHHHHHHHhcChHHHHhhh-Cccc--
Confidence 689999999999999999999997654 489999999999999999999999999854 7987
Q ss_pred ccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhh-cCccch
Q 039060 800 YKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRW-SGVSIE 878 (1040)
Q Consensus 800 ~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rw-sG~si~ 878 (1040)
++++++.||++|+++++||+.+++.++|+++|++++++|+.+++... ..++++++++++.+++.+.| .|....
T Consensus 389 --~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~----~~~~~~~lp~~~~~~~~~~~~~~~~~~ 462 (713)
T TIGR03030 389 --KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASA----LEILAYALPHMLHSLLTNSYLFGRVRW 462 (713)
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCH----HHHHHHHHHHHHHHHHHHHHHcCCeec
Confidence 56799999999999999999999999999999999999999887632 12233446666666666443 444456
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHH
Q 039060 879 EWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGIS 958 (1040)
Q Consensus 879 ~wWrne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~ 958 (1040)
.||+ |.| .+....+.+...+.+.+++++.+|+||+|++..+..+ + +.++.|+++++++|++|+++|++
T Consensus 463 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-----~--~~~~~p~~~l~~l~~~~~~~~~~ 530 (713)
T TIGR03030 463 PFWS-EVY----ETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-----F--SPLSRPYLILFALILAGLAFGLY 530 (713)
T ss_pred chHH-HHH----HHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-----c--chHHHHHHHHHHHHHHHHHHHHH
Confidence 6775 433 2222234445666677889999999999997633322 1 35889999999999999999999
Q ss_pred HhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHh---hcCCC
Q 039060 959 DAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGL---MGRQN 997 (1040)
Q Consensus 959 ~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL---~gR~~ 997 (1040)
+.+..+. ...+.+++.+|.++|++-+.-++ ++|++
T Consensus 531 ~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~~~~~r~Q 568 (713)
T TIGR03030 531 RIYGYPI----ERGVLLVVLGWNLLNLILLGAALAVVAERRQ 568 (713)
T ss_pred HHhcCcc----ccchhhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 9864332 23456899999999998777666 35543
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-66 Score=634.23 Aligned_cols=472 Identities=26% Similarity=0.434 Sum_probs=375.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCccc----hHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCCCCCCC
Q 039060 255 VIVARLVILAFFFRYRILNPVHD----AIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGEPNMLA 330 (1040)
Q Consensus 255 ~~~~~l~~l~~~l~wR~~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp 330 (1040)
++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.+...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 56677778899999999987662 34556788999999999999988888888877632 1233356789
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccc
Q 039060 331 PVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMY 410 (1040)
Q Consensus 331 ~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~Y 410 (1040)
+|||+||||| |++.++++||.+++++|||.++++|||+|||+++-| .++
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-------~~l--------------------- 309 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-------RQF--------------------- 309 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-------HHH---------------------
Confidence 9999999999 999999999999999999999999999999998621 111
Q ss_pred cccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCC
Q 039060 411 FTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHD 490 (1040)
Q Consensus 411 Fs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d 490 (1040)
+++
T Consensus 310 -------------------------------------a~~---------------------------------------- 312 (852)
T PRK11498 310 -------------------------------------AQE---------------------------------------- 312 (852)
T ss_pred -------------------------------------HHH----------------------------------------
Confidence 100
Q ss_pred CCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCceEEE
Q 039060 491 AEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRKVCYV 569 (1040)
Q Consensus 491 ~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~V 569 (1040)
..+.|++|++ |.|+||||+|++++. ++||||+++|||++ +++++|+++|.+| .|| ++|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEEE
Confidence 0168899877 678999999999996 68999999999998 7999999999865 788 89999
Q ss_pred ecCccccCCCchh-------hhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCC
Q 039060 570 QFPQRFDGIDRHD-------RYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCF 642 (1040)
Q Consensus 570 Q~PQ~F~nid~~D-------~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~ 642 (1040)
|+||.|+|.|+.. .+.+++..||+..++|+|.+++.+++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987643 2456778999999999999999999999999999888
Q ss_pred CcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhcccccccc
Q 039060 643 GRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDK 722 (1040)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~ 722 (1040)
+|+||+++
T Consensus 431 --------------------------------------------------eeVGGfd~---------------------- 438 (852)
T PRK11498 431 --------------------------------------------------DEIGGIAV---------------------- 438 (852)
T ss_pred --------------------------------------------------HHhcCCCC----------------------
Confidence 57898765
Q ss_pred CccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccC
Q 039060 723 TEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKG 802 (1040)
Q Consensus 723 T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~ 802 (1040)
+++|||++++++|+.+||+++|+++..+ .|++|+|++++++||.||++|++|+++. ++|++ +
T Consensus 439 -----------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~RWarG~lQi~r~-~~pl~----~ 500 (852)
T PRK11498 439 -----------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIRWARGMVQIFRL-DNPLT----G 500 (852)
T ss_pred -----------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHHHHHHHHHHHHH-hChhc----c
Confidence 5899999999999999999999976554 7999999999999999999999999975 68987 5
Q ss_pred CCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHHHHHHHHhhh-cCccchhhh
Q 039060 803 GNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFISIFTTGILELRW-SGVSIEEWW 881 (1040)
Q Consensus 803 ~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfls~~~~~lLe~rw-sG~si~~wW 881 (1040)
+++++.||++|+++++||+.++|.++|+++|++|+++|+.++.... .. ++++++++++...+...| +|.....||
T Consensus 501 ~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~---~~-i~~y~lP~~~~~~l~~~~~~g~~r~~~w 576 (852)
T PRK11498 501 KGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPA---LM-IALFVLPHMIHASLTNSRIQGKYRHSFW 576 (852)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCCh---HH-HHHHHHHHHHHHHHHHHHhcCcchHhHH
Confidence 6799999999999999999999999999999999999998774321 11 223345555544444433 333344555
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhH
Q 039060 882 RNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAI 961 (1040)
Q Consensus 882 rne~~W~I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i 961 (1040)
+ |. +..+.++.++ ...+..++++++.+|+||+|++..+.. .|+|. +..|+++++++|++|+++|+++.+
T Consensus 577 s-ei---ye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~-----~~~~~-~~~P~~~L~~L~l~gl~~g~~r~~ 645 (852)
T PRK11498 577 S-EI---YETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE-----YVDWV-ISRPYIFLVLLNLVGVAVGIWRYF 645 (852)
T ss_pred H-HH---HHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc-----ceehH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 32 2333343333 233444778899999999999763332 24564 578999999999999999999986
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHHHHHh
Q 039060 962 NNGYQSWGPLFGKLFFAFWVILHLYPFLKGL 992 (1040)
Q Consensus 962 ~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL 992 (1040)
.+.. ....+.+++.+|+++|++-+.-++
T Consensus 646 ~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 646 YGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred hCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 5321 233456799999999987766555
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.9e-44 Score=316.36 Aligned_cols=80 Identities=78% Similarity=1.575 Sum_probs=42.1
Q ss_pred CCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCCCccccc
Q 039060 26 PKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDEDEEDID 105 (1040)
Q Consensus 26 ~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~e~~~~ 105 (1040)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998876
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=9.1e-37 Score=368.45 Aligned_cols=358 Identities=18% Similarity=0.222 Sum_probs=245.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCccc-h--------HHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhc
Q 039060 251 PYRMVIVARLVILAFFFRYRILNPVHD-A--------IGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYE 321 (1040)
Q Consensus 251 ~yR~~~~~~l~~l~~~l~wR~~~~~~~-a--------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~ 321 (1040)
..|+++++..++...|..|+....++. + ..+-.+.+..+.+.+.+-+++.+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 357777777778888999998764431 1 112223334444444444444332211 12111 1110000
Q ss_pred cCCCCCCCCCeEEEEecCCCCCCChHH----HHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhh
Q 039060 322 REGEPNMLAPVDIFVSTVDPLKEPPLV----TANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFC 397 (1040)
Q Consensus 322 ~~~~~~~lp~VDV~V~t~nP~kEp~~~----v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFC 397 (1040)
.+......|.|+|+||+|| |++.. ++.|+.|+.+.+|| ++++++|+|||+++.+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456899999999999 99875 45556677779997 589999999998863211
Q ss_pred hhhcCCCCCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCcc
Q 039060 398 KKFAIEPRAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPG 477 (1040)
Q Consensus 398 kk~~iepR~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~ 477 (1040)
.|+ +.+++++. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 011 12333321 10
Q ss_pred ceeeeccCCCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh
Q 039060 478 MIQVFLGQSGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL 557 (1040)
Q Consensus 478 iiqv~l~~~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff 557 (1040)
+ .-+++.|.+|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 002589999988 77889999999999765 57899999999999 5899999999988
Q ss_pred c-CCCCCCceEEEecCccccCCCch-hhhhh-hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCC
Q 039060 558 M-DPQTGRKVCYVQFPQRFDGIDRH-DRYAN-RNTVFFDINMRGLDGIQG--PVYVGTGCVFRRQALYGYEPPKGPKRPK 632 (1040)
Q Consensus 558 ~-Dp~~g~~va~VQ~PQ~F~nid~~-D~y~n-~~~vFfdi~~~gldg~qg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~ 632 (1040)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.||+ ..|+|+|+++||+|+.
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~------------ 309 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFA------------ 309 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHH------------
Confidence 5 99 89999999999987631 22221 234556667788887763 5689999999999984
Q ss_pred CccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHH
Q 039060 633 MVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAI 712 (1040)
Q Consensus 633 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~ 712 (1040)
+.||.|.-
T Consensus 310 -------------------------------------------------------------~~~glp~L----------- 317 (691)
T PRK05454 310 -------------------------------------------------------------EHCGLPPL----------- 317 (691)
T ss_pred -------------------------------------------------------------HhcCCccc-----------
Confidence 22222210
Q ss_pred HhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhc
Q 039060 713 HVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSR 792 (1040)
Q Consensus 713 ~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk 792 (1040)
. ..-||..++++||+++|.+|+++||+++|+++ ...+++++|+|+.++++||.||++|++|++..
T Consensus 318 -------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~- 382 (691)
T PRK05454 318 -------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNLLDELKRDRRWCQGNLQHLRL- 382 (691)
T ss_pred -------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCHHHHHHHHHHHHhchHHHHHH-
Confidence 0 00145557899999999999999999999965 23358999999999999999999999999852
Q ss_pred CCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHH
Q 039060 793 HSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVL 832 (1040)
Q Consensus 793 ~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~ll 832 (1040)
+. .+++++.+|+.|++.++.++.+...++++++
T Consensus 383 ---l~----~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l 415 (691)
T PRK05454 383 ---LL----AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLL 415 (691)
T ss_pred ---HH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4579999999999888777776555444443
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.9e-34 Score=312.51 Aligned_cols=182 Identities=22% Similarity=0.328 Sum_probs=146.4
Q ss_pred CcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCceEEEecCccc
Q 039060 497 PRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGRKVCYVQFPQRF 575 (1040)
Q Consensus 497 P~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F 575 (1040)
++++|++|++ +.|+||||||+++...+ +++|||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 56679999999998532 58899999999999 69999999999885 99 89999999999
Q ss_pred cCCCch-hhh-hhhhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccc
Q 039060 576 DGIDRH-DRY-ANRNTVFFDINMRGLDGIQG--PVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSK 651 (1040)
Q Consensus 576 ~nid~~-D~y-~n~~~vFfdi~~~gldg~qg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 651 (1040)
.|.+.. .+. +-.+..|..+.+.|++.|++ .+|+||+.++||+||...
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~----------------------------- 186 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH----------------------------- 186 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------------
Confidence 997642 221 11356677778888887655 578999999999998311
Q ss_pred cccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCc
Q 039060 652 HSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGW 731 (1040)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW 731 (1040)
..+.++||+. ||
T Consensus 187 --------------------------------------~~~~~i~g~g------------------------------~~ 198 (254)
T cd04191 187 --------------------------------------CALPVLPGRP------------------------------PF 198 (254)
T ss_pred --------------------------------------cCCccccCCC------------------------------CC
Confidence 0011234432 56
Q ss_pred ccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchh
Q 039060 732 IYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVE 787 (1040)
Q Consensus 732 ~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQ 787 (1040)
..++++||+++|++++.+||+++|.+... +.++++|+|++++++||.||++|++|
T Consensus 199 ~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 199 GGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred CCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 67899999999999999999999997544 23789999999999999999999998
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-31 Score=303.82 Aligned_cols=233 Identities=28% Similarity=0.436 Sum_probs=171.9
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcc
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPE 408 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe 408 (1040)
+|.|||+||+|| |++.++++|+.|++++||| +++|+|+|||+++-|++-+.| ++.+
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp--~~evivv~d~~~d~~~~~~~~--------------~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYP--RYEVIVVDDGSTDETYEILEE--------------LGAE----- 108 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCC--CceEEEECCCCChhHHHHHHH--------------HHhh-----
Confidence 699999999999 9999999999999999999 489999999999855552222 1100
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCC
Q 039060 409 MYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGG 488 (1040)
Q Consensus 409 ~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 488 (1040)
++..++
T Consensus 109 ------------------------------------------------------------------~~~~~~-------- 114 (439)
T COG1215 109 ------------------------------------------------------------------YGPNFR-------- 114 (439)
T ss_pred ------------------------------------------------------------------cCcceE--------
Confidence 000011
Q ss_pred CCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEE
Q 039060 489 HDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCY 568 (1040)
Q Consensus 489 ~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~ 568 (1040)
++|. ++ .+++|+||+|.++.. +.+|+|+++|||++ +.|++|++++..|.|+. .+|.
T Consensus 115 ----------~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 115 ----------VIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ----------EEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 1111 22 678899999999986 56999999999999 79999999999999874 3379
Q ss_pred EecCccccCCCchhhhhhhhhhhhhh-----hccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCC
Q 039060 569 VQFPQRFDGIDRHDRYANRNTVFFDI-----NMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFG 643 (1040)
Q Consensus 569 VQ~PQ~F~nid~~D~y~n~~~vFfdi-----~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~ 643 (1040)
+|.|+.+.+.++.......+.+.|.. ...+.++....++.|++.+|||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr--------------------------- 223 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRR--------------------------- 223 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEH---------------------------
Confidence 99999998876411111111111111 1112222233444455555555
Q ss_pred cccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccC
Q 039060 644 RRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKT 723 (1040)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T 723 (1040)
++|++.||
T Consensus 224 ----------------------------------------------~aL~~~g~-------------------------- 231 (439)
T COG1215 224 ----------------------------------------------SALEEVGG-------------------------- 231 (439)
T ss_pred ----------------------------------------------HHHHHhCC--------------------------
Confidence 55567775
Q ss_pred ccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhh
Q 039060 724 EWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFS 791 (1040)
Q Consensus 724 ~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 791 (1040)
|...++|||.+++++++.+|||+.|++++. +++++|+|+.++++||.||++|++|++..
T Consensus 232 -------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~--~~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 232 -------WLEDTITEDADLTLRLHLRGYRVVYVPEAI--VWTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred -------CCCCceeccHHHHHHHHHCCCeEEEeecce--EeeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 444799999999999999999999997654 48999999999999999999999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=7e-30 Score=296.30 Aligned_cols=232 Identities=24% Similarity=0.273 Sum_probs=170.4
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRA 406 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~ 406 (1040)
...|.|+|+||+|| |+ ..+.+||.|+++++|| +++|+|+|||+++-|.+.+.|
T Consensus 72 ~~~p~vsViIP~yN---E~-~~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EG-LNARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 87 5679999999999999 599999999998754432221
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCC
Q 039060 407 PEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQS 486 (1040)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 486 (1040)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCc
Q 039060 487 GGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRK 565 (1040)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 565 (1040)
.|++.++.++++ .+||+|+|++++. +++|||+++|+|++ ++|++|++.+..| .|| +
T Consensus 129 ---------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 022445554442 3499999999986 68999999999998 6999999999866 567 8
Q ss_pred eEEEecCccccCCCch-hhh-hhhhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCccCCCCCCC
Q 039060 566 VCYVQFPQRFDGIDRH-DRY-ANRNTVFFDINMRGLDGIQGPVY-VGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCF 642 (1040)
Q Consensus 566 va~VQ~PQ~F~nid~~-D~y-~n~~~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~ 642 (1040)
++.||..++..|.+.. .+. ..+...++....++.+..+..+. .|++++|||+||
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al----------------------- 242 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRAL----------------------- 242 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHH-----------------------
Confidence 9999998776553211 111 11233334444444443333332 255555555444
Q ss_pred CcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhcccccccc
Q 039060 643 GRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDK 722 (1040)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~ 722 (1040)
+++||++
T Consensus 243 --------------------------------------------------~~vGg~~----------------------- 249 (444)
T PRK14583 243 --------------------------------------------------ADVGYWS----------------------- 249 (444)
T ss_pred --------------------------------------------------HHcCCCC-----------------------
Confidence 6778644
Q ss_pred CccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhc
Q 039060 723 TEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSR 792 (1040)
Q Consensus 723 T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk 792 (1040)
.+.++||++++++|+.+||++.|+++.. +++++|+|+.++++||.||++|.+|+++++
T Consensus 250 ----------~~~i~ED~dl~~rl~~~G~~i~~~p~a~--~~~~~p~t~~~~~~Qr~RW~~G~~~~~~~~ 307 (444)
T PRK14583 250 ----------PDMITEDIDISWKLQLKHWSVFFEPRGL--CWILMPETLRGLWKQRLRWAQGGAEVFLKN 307 (444)
T ss_pred ----------CCcccccHHHHHHHHHcCCeEEEeeccE--EeeeCCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence 4689999999999999999999997644 489999999999999999999999999864
No 18
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.97 E-value=2.1e-28 Score=280.39 Aligned_cols=232 Identities=24% Similarity=0.285 Sum_probs=168.5
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
....|.|+|+||+|| |+ ..+++|+.|+++++|| +++|+|+|||+++-|.+.+.+
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~~-------------------- 103 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILDR-------------------- 103 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHHH--------------------
Confidence 356899999999999 76 7789999999999999 689999999998744332211
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
++++
T Consensus 104 -----------------------------------------~~~~----------------------------------- 107 (420)
T PRK11204 104 -----------------------------------------LAAQ----------------------------------- 107 (420)
T ss_pred -----------------------------------------HHHh-----------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGR 564 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 564 (1040)
.|++.++.++++. .||+|+|.+++. +++|||+++|+|.+ +.|++|.+++..| .||
T Consensus 108 ----------~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 108 ----------IPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ----------CCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 1246677765533 499999999986 68999999999998 6999999999988 588
Q ss_pred ceEEEecCccccCCCchhhhhhhhhh----hhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCC
Q 039060 565 KVCYVQFPQRFDGIDRHDRYANRNTV----FFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCP 640 (1040)
Q Consensus 565 ~va~VQ~PQ~F~nid~~D~y~n~~~v----Ffdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~ 640 (1040)
+++.||...+..|... ..+..+.. ++....++....+....+
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 209 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTV-------------------------------- 209 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEe--------------------------------
Confidence 8999999877765321 11111111 111111111111111110
Q ss_pred CCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhcccccc
Q 039060 641 CFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYE 720 (1040)
Q Consensus 641 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE 720 (1040)
-|.+..||+++++++||+.+
T Consensus 210 ----------------------------------------~G~~~~~rr~~l~~vgg~~~-------------------- 229 (420)
T PRK11204 210 ----------------------------------------SGVITAFRKSALHEVGYWST-------------------- 229 (420)
T ss_pred ----------------------------------------cceeeeeeHHHHHHhCCCCC--------------------
Confidence 13334555666678887654
Q ss_pred ccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhc
Q 039060 721 DKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSR 792 (1040)
Q Consensus 721 ~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk 792 (1040)
..++||++++++++.+||++.|+++.. ++++.|+|++++++||+||++|++|.++++
T Consensus 230 -------------~~~~ED~~l~~rl~~~G~~i~~~p~~~--~~~~~p~t~~~~~~Qr~RW~~G~~~~l~~~ 286 (420)
T PRK11204 230 -------------DMITEDIDISWKLQLRGWDIRYEPRAL--CWILMPETLKGLWKQRLRWAQGGAEVLLKN 286 (420)
T ss_pred -------------CcccchHHHHHHHHHcCCeEEeccccE--EEeECcccHHHHHHHHHHHhcCHHHHHHHH
Confidence 578999999999999999999997644 489999999999999999999999999854
No 19
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.97 E-value=1.8e-28 Score=284.39 Aligned_cols=283 Identities=15% Similarity=0.230 Sum_probs=192.4
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.++++|+|+|||+++-|.+.+.|++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------------------ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------------------ 102 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------------------
Confidence 467999999999999 76 78999999999999999999999999999986655333320
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
++ +|+ +
T Consensus 103 -------------------------------------------~~------------------------~~~-v------ 108 (439)
T TIGR03111 103 -------------------------------------------NE------------------------FPG-L------ 108 (439)
T ss_pred -------------------------------------------Hh------------------------CCC-e------
Confidence 00 000 0
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGR 564 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1040)
.++++ + +.++||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 109 ------------~v~~~--~-----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 109 ------------SLRYM--N-----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred ------------EEEEe--C-----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 02222 1 235799999999986 58999999999999 69999999999885 77
Q ss_pred ceEEEecCccccCCCchh-------hhhhhhhhhhhhhc---cc--cccCCCccccccccchhhhhhcCCCCCCCCCCCC
Q 039060 565 KVCYVQFPQRFDGIDRHD-------RYANRNTVFFDINM---RG--LDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPK 632 (1040)
Q Consensus 565 ~va~VQ~PQ~F~nid~~D-------~y~n~~~vFfdi~~---~g--ldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~ 632 (1040)
+++.|+..+.- +.+..+ ++..+.. +++... .| .....+..+
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~y~~~~l~~r~~~s~~~~~~------------------------- 213 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRCE-YFEYAQAFLAGRNFESQVNSLF------------------------- 213 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHhH-HHHHHHHHHhhhHHHHhcCCeE-------------------------
Confidence 56665543321 111000 0100110 111100 00 000000000
Q ss_pred CccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHH
Q 039060 633 MVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAI 712 (1040)
Q Consensus 633 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~ 712 (1040)
-..|...+||++++++.||+++
T Consensus 214 ----------------------------------------------~~sGa~~~~Rr~~l~~vggf~~------------ 235 (439)
T TIGR03111 214 ----------------------------------------------TLSGAFSAFRRETILKTQLYNS------------ 235 (439)
T ss_pred ----------------------------------------------EEccHHHhhhHHHHHHhCCCCC------------
Confidence 0124455677788888998664
Q ss_pred HhccccccccCccccccCcccccccchHHHHHHHHh-CCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhh
Q 039060 713 HVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHC-RGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFS 791 (1040)
Q Consensus 713 ~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~-~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 791 (1040)
++++||++++++++. .|+++.|++++ .++.++|+|++++++||.||++|.+|++..
T Consensus 236 ---------------------~~i~ED~~l~~rl~~~~g~kv~~~~~a--~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~ 292 (439)
T TIGR03111 236 ---------------------ETVGEDTDMTFQIRELLDGKVYLCENA--IFYVDPIDGLNKLYTQRQRWQRGELEVSHM 292 (439)
T ss_pred ---------------------CCcCccHHHHHHHHHhcCCeEEECCCC--EEEEECCcCHHHHHHHHHHHhccHHHHHHH
Confidence 589999999999975 69999999654 458899999999999999999999999975
Q ss_pred cCCcccccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCcc
Q 039060 792 RHSPVWYGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIM 844 (1040)
Q Consensus 792 k~~PL~~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~ii 844 (1040)
..++.. +.+.++.+++.+...+..+...+|.+++.++++++.+++.++.
T Consensus 293 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 293 FFESAN----KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHhhhh----hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 443332 2335555665554455556667788888888888887775544
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.96 E-value=3.9e-26 Score=268.27 Aligned_cols=266 Identities=19% Similarity=0.236 Sum_probs=181.9
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSIL-AMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRA 406 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~l-a~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~ 406 (1040)
..|.|+|+||+|| |. .++.+||.+++ ++||| +++|+|.||++++-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999999 87 79999999965 78997 8999999999988665533331
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCC
Q 039060 407 PEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQS 486 (1040)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 486 (1040)
++ .||+
T Consensus 118 -----------------------------------------~~------------------------~~p~--------- 123 (504)
T PRK14716 118 -----------------------------------------AA------------------------RYPR--------- 123 (504)
T ss_pred -----------------------------------------HH------------------------HCCC---------
Confidence 10 1222
Q ss_pred CCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhc--CCCCC---CEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 039060 487 GGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSG--VLTNA---PFMLNLDCDHYVNNSKAVRESMCFLMDPQ 561 (1040)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSa--v~tng---p~Il~lDcD~~~~~p~~Lr~amcff~Dp~ 561 (1040)
+..+. .+++| .+.||+|||.+++..- -...| ++|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 21111 12222 3579999999987521 01134 99999999999 599999976555433
Q ss_pred CCCceEEEecCccccCCCchhh----hhhhhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCccC
Q 039060 562 TGRKVCYVQFPQRFDGIDRHDR----YANRNTVFFDINMRGLDGIQGPV-YVGTGCVFRRQALYGYEPPKGPKRPKMVSC 636 (1040)
Q Consensus 562 ~g~~va~VQ~PQ~F~nid~~D~----y~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~ 636 (1040)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665443322 22222223444566677777765 578999998888820
Q ss_pred CCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhcc
Q 039060 637 DCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVIS 716 (1040)
Q Consensus 637 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~s 716 (1040)
...+.||.
T Consensus 247 ------------------------------------------------------l~~~~GG~------------------ 254 (504)
T PRK14716 247 ------------------------------------------------------LAAERGGQ------------------ 254 (504)
T ss_pred ------------------------------------------------------HHhhcCCC------------------
Confidence 01122431
Q ss_pred ccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcc-------------cccccCCCCHHHHHHHHHHhhc
Q 039060 717 CGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRA-------------AFKGSAPINLSDRLNQVLRWAL 783 (1040)
Q Consensus 717 C~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~-------------af~G~aP~tl~~~l~QR~RWA~ 783 (1040)
+|..+++|||+++|++++.+|||++|++.+.. +.++++|+|++++++||.||++
T Consensus 255 -------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~ 321 (504)
T PRK14716 255 -------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIY 321 (504)
T ss_pred -------------CCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHh
Confidence 26668999999999999999999999976421 2458899999999999999999
Q ss_pred cc-hhHHhhcCCccccc-ccCCCCCccchhhhhhhhh
Q 039060 784 GS-VEIFFSRHSPVWYG-YKGGNLRFLERFAYVNTTI 818 (1040)
Q Consensus 784 G~-lQil~sk~~PL~~g-~~~~~L~l~QRL~Yl~~~l 818 (1040)
|. +|...+.- |.+ ...+.+.|++|.+.+...+
T Consensus 322 Gi~~Q~~~~~g---w~~~~~~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 322 GIAFQGWERLG---WKGPAATKYMLWRDRKGLLTNLL 355 (504)
T ss_pred chHHhhHHhcC---CCCchhhhhhHHHHHHHHHHHHH
Confidence 95 78875321 111 1123366778877666544
No 21
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=6.4e-26 Score=275.97 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHH-cCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSIL-AMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~l-a~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
...|.|+|+||+|| |. .++.+|+.+++ ++||| +++|+|.+|++.+-|.+.+.+
T Consensus 60 ~~~~~vsIlVPa~n---E~-~vi~~~i~~ll~~ldYP--~~eI~vi~~~nD~~T~~~~~~-------------------- 113 (727)
T PRK11234 60 PDEKPLAIMVPAWN---ET-GVIGNMAELAATTLDYE--NYHIFVGTYPNDPATQADVDA-------------------- 113 (727)
T ss_pred CCCCCEEEEEecCc---ch-hhHHHHHHHHHHhCCCC--CeEEEEEecCCChhHHHHHHH--------------------
Confidence 45799999999999 87 89999999987 79999 499999977665533332221
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
++++ ||.+
T Consensus 114 -----------------------------------------l~~~------------------------~p~~------- 121 (727)
T PRK11234 114 -----------------------------------------VCAR------------------------FPNV------- 121 (727)
T ss_pred -----------------------------------------HHHH------------------------CCCc-------
Confidence 1111 1111
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCC---CC--CCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVL---TN--APFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~---tn--gp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
+++.+.| +| .+.||+|||.++...--. +. .+.++++|||.+ ++|++|+ .+.+|.++
T Consensus 122 ------------~~v~~~~---~g--~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~ 182 (727)
T PRK11234 122 ------------HKVVCAR---PG--PTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER 182 (727)
T ss_pred ------------EEEEeCC---CC--CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC
Confidence 1233333 32 357999999998863100 12 356888999999 6999998 67888886
Q ss_pred CCCCceEEEecCccccCCCchhh----hhhhhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCcc
Q 039060 561 QTGRKVCYVQFPQRFDGIDRHDR----YANRNTVFFDINMRGLDGIQGPV-YVGTGCVFRRQALYGYEPPKGPKRPKMVS 635 (1040)
Q Consensus 561 ~~g~~va~VQ~PQ~F~nid~~D~----y~n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~ 635 (1040)
+ ++||.|..-.+...+.. |..+....+...+++++.++|++ +.|+|++|.|+++
T Consensus 183 ----~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l---------------- 241 (727)
T PRK11234 183 ----K-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV---------------- 241 (727)
T ss_pred ----C-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH----------------
Confidence 4 79999966433332222 23344444556778888887765 4588888854433
Q ss_pred CCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhC-CCCCCCCchhHHHHHHHh
Q 039060 636 CDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQG-GVPPSSSPASLLKEAIHV 714 (1040)
Q Consensus 636 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~G-G~~~~~~~~~~~~~a~~v 714 (1040)
+++.+.| |+
T Consensus 242 ------------------------------------------------------~al~~~ggg~---------------- 251 (727)
T PRK11234 242 ------------------------------------------------------TALLEDGDGI---------------- 251 (727)
T ss_pred ------------------------------------------------------HHHHHhcCCC----------------
Confidence 2234555 32
Q ss_pred ccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCc---------------------ccccccCCCCHHH
Q 039060 715 ISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKR---------------------AAFKGSAPINLSD 773 (1040)
Q Consensus 715 ~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~---------------------~af~G~aP~tl~~ 773 (1040)
||..+++|||+++|++|+.+||+++|++... .++++..|+|+++
T Consensus 252 ---------------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~ 316 (727)
T PRK11234 252 ---------------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSA 316 (727)
T ss_pred ---------------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHH
Confidence 5888999999999999999999999997221 3367889999999
Q ss_pred HHHHHHHhhcc-chhHHh
Q 039060 774 RLNQVLRWALG-SVEIFF 790 (1040)
Q Consensus 774 ~l~QR~RWA~G-~lQil~ 790 (1040)
.++||.||.+| .+|.+.
T Consensus 317 ~~rQR~RW~~G~~~q~~~ 334 (727)
T PRK11234 317 AVRQKSRWIIGIVFQGFK 334 (727)
T ss_pred HHHHHHHHHcccHHHHHH
Confidence 99999999999 588875
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.95 E-value=1.9e-26 Score=239.88 Aligned_cols=229 Identities=35% Similarity=0.593 Sum_probs=177.4
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|.|+||+|| |++..++.++.|+++++||.++++++|+|||+++-|.+-+.
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~------------------------- 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA------------------------- 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-------------------------
Confidence 68999999999 88889999999999999998889999999998864322111
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
++..+ +
T Consensus 53 ------------------------------------~~~~~-----------------------~--------------- 58 (234)
T cd06421 53 ------------------------------------ELGVE-----------------------Y--------------- 58 (234)
T ss_pred ------------------------------------Hhhcc-----------------------c---------------
Confidence 01000 0
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcC-CCCCCceEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMD-PQTGRKVCY 568 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D-p~~g~~va~ 568 (1040)
++.|+.+++ +.+.|+||+|++++. ++++||+++|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 59 --------~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 59 --------GYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred --------CceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 145666665 455699999999996 58999999999999 589999999999876 6 8999
Q ss_pred EecCccccCCCch----hhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCc
Q 039060 569 VQFPQRFDGIDRH----DRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGR 644 (1040)
Q Consensus 569 VQ~PQ~F~nid~~----D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~ 644 (1040)
||+++.+.+.+.. ..+......|+.....+...+....+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 9999999877653 22333444555555555444445555666666666555
Q ss_pred ccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCc
Q 039060 645 RKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTE 724 (1040)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~ 724 (1040)
+++||++.
T Consensus 173 ------------------------------------------------~~ig~~~~------------------------ 180 (234)
T cd06421 173 ------------------------------------------------DEIGGFPT------------------------ 180 (234)
T ss_pred ------------------------------------------------HHhCCCCc------------------------
Confidence 56788764
Q ss_pred cccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHH
Q 039060 725 WGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIF 789 (1040)
Q Consensus 725 WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil 789 (1040)
..+.||++++++++.+||+++|++... +++..|.++.++++|+.||.+|++|++
T Consensus 181 ---------~~~~eD~~l~~r~~~~g~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 181 ---------DSVTEDLATSLRLHAKGWRSVYVPEPL--AAGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred ---------cceeccHHHHHHHHHcCceEEEecCcc--ccccCCccHHHHHHHHHHHhcCCeeeC
Confidence 357899999999999999999998754 489999999999999999999999864
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.94 E-value=3.9e-26 Score=239.94 Aligned_cols=228 Identities=21% Similarity=0.340 Sum_probs=164.8
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| |. ..+.++|.|+++++||.++++|+|+|| +++-|.+.+.+. .+
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~---~~------------------ 54 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI---VE------------------ 54 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH---HH------------------
Confidence 67999999998 86 788999999999999999999999998 777666544332 00
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
+++ .
T Consensus 55 -----------------------------~~~--------~--------------------------------------- 58 (232)
T cd06437 55 -----------------------------EYA--------A--------------------------------------- 58 (232)
T ss_pred -----------------------------HHh--------h---------------------------------------
Confidence 000 0
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV 569 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1040)
.-+++.++.+.+++|+ |++|+|++++. ++++||+++|+|.+ ++|++|++++.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0024778888776554 99999999986 58999999999999 5999999987788888 79999
Q ss_pred ecCccccCCCchh--hhh-hhhhhhhhhhccccccCCCcc-ccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcc
Q 039060 570 QFPQRFDGIDRHD--RYA-NRNTVFFDINMRGLDGIQGPV-YVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRR 645 (1040)
Q Consensus 570 Q~PQ~F~nid~~D--~y~-n~~~vFfdi~~~gldg~qgp~-yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~ 645 (1040)
|.+..+.+.+.+- ++. -....++...+.+........ .+|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------------------- 166 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTA---------------------------------- 166 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccch----------------------------------
Confidence 9987666543221 110 011112222222222111111 22333
Q ss_pred cccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCcc
Q 039060 646 KKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEW 725 (1040)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~W 725 (1040)
.+||+++++++||+++
T Consensus 167 ---------------------------------------~~~rr~~~~~vgg~~~------------------------- 182 (232)
T cd06437 167 ---------------------------------------GVWRKECIEDAGGWNH------------------------- 182 (232)
T ss_pred ---------------------------------------hhhhHHHHHHhCCCCC-------------------------
Confidence 4555566678898764
Q ss_pred ccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccc
Q 039060 726 GLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGS 785 (1040)
Q Consensus 726 G~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~ 785 (1040)
.++.||+++++|++.+||+++|++... ++...|+|+.++++||+||++|.
T Consensus 183 --------~~~~ED~~l~~rl~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 --------DTLTEDLDLSYRAQLKGWKFVYLDDVV--VPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred --------CcchhhHHHHHHHHHCCCeEEEeccce--eeeeCCcCHHHHHHHHHHhccCC
Confidence 357899999999999999999997543 58999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.93 E-value=7.4e-25 Score=232.46 Aligned_cols=233 Identities=22% Similarity=0.296 Sum_probs=167.2
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| |+ ..+.+||.|+++++||.++++|+|+|||+++.|.+.+.+. +.
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~~------------------ 55 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---RL------------------ 55 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---cc------------------
Confidence 78999999999 86 7899999999999999889999999999987554422110 00
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
+
T Consensus 56 ---------------------------------------------~---------------------------------- 56 (241)
T cd06427 56 ---------------------------------------------P---------------------------------- 56 (241)
T ss_pred ---------------------------------------------C----------------------------------
Confidence 0
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV 569 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1040)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244443322 23699999999986 68999999999999 5899999999988621 1289999
Q ss_pred ecCccccCCCchh---hhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCccc
Q 039060 570 QFPQRFDGIDRHD---RYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRK 646 (1040)
Q Consensus 570 Q~PQ~F~nid~~D---~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~ 646 (1040)
|.+..+++...+- .+......+|...+++....+.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 161 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPL-------------------------------------- 161 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeec--------------------------------------
Confidence 9988887643221 11111122233334433322222211
Q ss_pred ccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccc
Q 039060 647 KKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWG 726 (1040)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG 726 (1040)
.|+..++++++++++||+.+
T Consensus 162 ----------------------------------~g~~~~~rr~~~~~vgg~~~-------------------------- 181 (241)
T cd06427 162 ----------------------------------GGTSNHFRTDVLRELGGWDP-------------------------- 181 (241)
T ss_pred ----------------------------------CCchHHhhHHHHHHcCCCCc--------------------------
Confidence 13334556666678898654
Q ss_pred cccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhh
Q 039060 727 LELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFS 791 (1040)
Q Consensus 727 ~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 791 (1040)
...+||++++++++.+||++.|++. . ++...|+|+.++++||.||+.|.+|++..
T Consensus 182 -------~~~~eD~~l~~rl~~~G~r~~~~~~-~--~~~~~~~~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 182 -------FNVTEDADLGLRLARAGYRTGVLNS-T--TLEEANNALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred -------ccchhhHHHHHHHHHCCceEEEecc-c--ccccCcHhHHHHHHHHHHHhccHHHHHHH
Confidence 4678999999999999999999954 2 36899999999999999999999999974
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.93 E-value=2.1e-24 Score=226.37 Aligned_cols=229 Identities=27% Similarity=0.409 Sum_probs=161.7
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHH-HHHHHHHHhhhhhhhhhhhcCCCCCccccc
Q 039060 333 DIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFD-ALAETAEFARKWVPFCKKFAIEPRAPEMYF 411 (1040)
Q Consensus 333 DV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~-al~Eaa~fA~~WvPFCkk~~iepR~Pe~YF 411 (1040)
.|+||+|| |++..+.+++.|+++++|| +++++|+|||+++-|.. .+.
T Consensus 1 siiip~~n---e~~~~l~~~l~sl~~q~~~--~~eiiVvdd~s~D~t~~~~i~--------------------------- 48 (236)
T cd06435 1 SIHVPCYE---EPPEMVKETLDSLAALDYP--NFEVIVIDNNTKDEALWKPVE--------------------------- 48 (236)
T ss_pred CeeEeeCC---CcHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCchhHHHHHH---------------------------
Confidence 48999999 8889999999999999999 58999999999874321 110
Q ss_pred ccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCC
Q 039060 412 TLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDA 491 (1040)
Q Consensus 412 s~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~ 491 (1040)
+ +.++. +
T Consensus 49 ---------------------------~-------~~~~~-----------------------------------~---- 55 (236)
T cd06435 49 ---------------------------A-------HCAQL-----------------------------------G---- 55 (236)
T ss_pred ---------------------------H-------HHHHh-----------------------------------C----
Confidence 1 11000 0
Q ss_pred CCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEec
Q 039060 492 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQF 571 (1040)
Q Consensus 492 ~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~ 571 (1040)
+++.++..++.+| .|+||+|.+++.+. .+++||+++|+|.. ..|++|.+++.+|.+| +++.||+
T Consensus 56 -----~~i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~ 119 (236)
T cd06435 56 -----ERFRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQA 119 (236)
T ss_pred -----CcEEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEec
Confidence 1255666665344 59999999998742 46899999999998 5999999999998877 8999999
Q ss_pred CccccCCCchhhhhh----hhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccc
Q 039060 572 PQRFDGIDRHDRYAN----RNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKK 647 (1040)
Q Consensus 572 PQ~F~nid~~D~y~n----~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~ 647 (1040)
++.+.+... ..+.- ....+|...+......+.....|
T Consensus 120 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------------------------- 160 (236)
T cd06435 120 PQDYRDGEE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQHG-------------------------------------- 160 (236)
T ss_pred CccccCCCc-cHHHHHHhHHHHHHHHHHhccccccCceEEec--------------------------------------
Confidence 876643221 11110 00111111121111111222233
Q ss_pred cccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCcccc
Q 039060 648 KYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGL 727 (1040)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~ 727 (1040)
+..+++++++.++||+++
T Consensus 161 -----------------------------------~~~~~rr~~~~~iGgf~~--------------------------- 178 (236)
T cd06435 161 -----------------------------------TMCLIRRSALDDVGGWDE--------------------------- 178 (236)
T ss_pred -----------------------------------ceEEEEHHHHHHhCCCCC---------------------------
Confidence 334455566678898764
Q ss_pred ccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhh
Q 039060 728 ELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFS 791 (1040)
Q Consensus 728 evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 791 (1040)
....||++++++++.+||++.|++... .+...|.|+.++++||+||++|++|++.+
T Consensus 179 ------~~~~eD~dl~~r~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 ------WCITEDSELGLRMHEAGYIGVYVAQSY--GHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred ------ccccchHHHHHHHHHCCcEEEEcchhh--ccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 357899999999999999999997543 48899999999999999999999999974
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.90 E-value=3.2e-24 Score=223.46 Aligned_cols=224 Identities=29% Similarity=0.438 Sum_probs=134.7
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| |+ ..+.+||.|+++++|| +++|+|+||++.+-|.+.+.
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~------------------------- 49 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILR------------------------- 49 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHH-------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHH-------------------------
Confidence 78999999998 76 5999999999999996 69999999998763322111
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
+++++ +|+
T Consensus 50 ------------------------------------~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 50 ------------------------------------ALAAR------------------------YPR------------ 57 (228)
T ss_dssp ------------------------------------HHHHT------------------------TGG------------
T ss_pred ------------------------------------HHHHH------------------------cCC------------
Confidence 11111 000
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV 569 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1040)
-++.++.+.+++| ...|++|+|.+++. ..+++|+++|+|.++ +|++|++++.+|.+| +++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTVL-DPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEEE--CHHHHHHHHHHHBS----S--EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcEE-CHHHHHHHHHHHHhC----CCCeE
Confidence 0256777665332 23699999999996 469999999999995 999999999999888 89999
Q ss_pred ecCccccCCCchhhhhhhhhhhhhh----hccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcc
Q 039060 570 QFPQRFDGIDRHDRYANRNTVFFDI----NMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRR 645 (1040)
Q Consensus 570 Q~PQ~F~nid~~D~y~n~~~vFfdi----~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~ 645 (1040)
|.+..+++ +.+- +......++.. ...+....+.+.+.|++++|||++
T Consensus 120 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~--------------------------- 170 (228)
T PF13641_consen 120 GGPVFPDN-DRNW-LTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSA--------------------------- 170 (228)
T ss_dssp EEEEEETT-CCCE-EEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHH---------------------------
T ss_pred eeeEeecC-CCCH-HHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHH---------------------------
Confidence 98886664 2221 11111112111 122223333344455555555544
Q ss_pred cccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCcc
Q 039060 646 KKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEW 725 (1040)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~W 725 (1040)
++++||+++
T Consensus 171 ----------------------------------------------~~~~g~fd~------------------------- 179 (228)
T PF13641_consen 171 ----------------------------------------------LEEVGGFDP------------------------- 179 (228)
T ss_dssp ----------------------------------------------HHHH-S--S-------------------------
T ss_pred ----------------------------------------------HHHhCCCCC-------------------------
Confidence 467887654
Q ss_pred ccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhcc
Q 039060 726 GLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALG 784 (1040)
Q Consensus 726 G~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 784 (1040)
....||+++++++..+||+++|++... ++...|.|+.++++||.||++|
T Consensus 180 --------~~~~eD~~l~~r~~~~G~~~~~~~~~~--v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 --------FILGEDFDLCLRLRAAGWRIVYAPDAL--VYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp --------SSSSHHHHHHHHHHHTT--EEEEEEEE--EEE--SSSTHHHHHHHHHHH--
T ss_pred --------CCcccHHHHHHHHHHCCCcEEEECCcE--EEEeCCCCHHHHHHHHhccCcC
Confidence 467899999999999999999996533 5899999999999999999987
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.88 E-value=4.2e-21 Score=232.04 Aligned_cols=172 Identities=20% Similarity=0.285 Sum_probs=127.1
Q ss_pred CCCchhhhHHHHHHh---cCCCCCCE--EEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCcc-ccCCCch---h
Q 039060 512 HHKKAGAMNALVRVS---GVLTNAPF--MLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQR-FDGIDRH---D 582 (1040)
Q Consensus 512 hh~KAGALNallrvS---av~tngp~--Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~-F~nid~~---D 582 (1040)
...||.|||.++... .-.+.++| |+++|||.+ ++|++|+. |-|+.+. . -+||.|-. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHH
Confidence 356999999988752 11124445 999999998 79999986 5676643 1 36998722 2221111 3
Q ss_pred hhhhhhhhhhhhhccccccCCCccc-cccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccC
Q 039060 583 RYANRNTVFFDINMRGLDGIQGPVY-VGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANL 661 (1040)
Q Consensus 583 ~y~n~~~vFfdi~~~gldg~qgp~y-vGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 661 (1040)
.|+.+....|...|+++..+++++. .|||++|||+||-
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~----------------------------------------- 250 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL----------------------------------------- 250 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH-----------------------------------------
Confidence 3677788888889999999989876 5799999999982
Q ss_pred CCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHH
Q 039060 662 GGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDIL 741 (1040)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~ 741 (1040)
.+.+.||.. +|+.+|+|||++
T Consensus 251 -----------------------------~l~~~gg~~------------------------------~~n~~sLTED~D 271 (703)
T PRK15489 251 -----------------------------ALMKERGNQ------------------------------PFNTSSLTEDYD 271 (703)
T ss_pred -----------------------------HHHHhcCCC------------------------------CCCCCCchHhHH
Confidence 112334321 588899999999
Q ss_pred HHHHHHhCCcEEEEeCC---------------------CcccccccCCCCHHHHHHHHHHhhccch-hHHh
Q 039060 742 TGFKMHCRGWRSIYCMP---------------------KRAAFKGSAPINLSDRLNQVLRWALGSV-EIFF 790 (1040)
Q Consensus 742 tg~rLh~~GWrsvY~~~---------------------~~~af~G~aP~tl~~~l~QR~RWA~G~l-Qil~ 790 (1040)
+|+||+.+|||+.|+.- ...+.++..|.|+.+.++||.||..|-. |-..
T Consensus 272 lg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi~~q~~~ 342 (703)
T PRK15489 272 FSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGIAFQGWE 342 (703)
T ss_pred HHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHHHHhhHH
Confidence 99999999999999321 1245678999999999999999999987 7754
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.88 E-value=4.1e-21 Score=218.49 Aligned_cols=233 Identities=18% Similarity=0.225 Sum_probs=157.8
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRA 406 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~ 406 (1040)
...|.|+|+||+|| |++ .+.+|+.|++++|||. ++|+|.||++++-|.+.+.+
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~--------------------- 90 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRR--------------------- 90 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHH---------------------
Confidence 34899999999999 874 6789999999999994 89999999988754432211
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCC
Q 039060 407 PEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQS 486 (1040)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 486 (1040)
+.+ +||.
T Consensus 91 ----------------------------------------~~~------------------------~~p~--------- 97 (373)
T TIGR03472 91 ----------------------------------------LRA------------------------DFPD--------- 97 (373)
T ss_pred ----------------------------------------HHH------------------------hCCC---------
Confidence 110 0110
Q ss_pred CCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCce
Q 039060 487 GGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKV 566 (1040)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~v 566 (1040)
.++.++.+.++.| .+.|++|+|.+++. +++|+|+++|+|.+ +.|++|++++..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1255564444333 45799999988875 68999999999998 5999999999999998 78
Q ss_pred EEEecCccccCCCchhhhhhhh-hhhhhh-hccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCc
Q 039060 567 CYVQFPQRFDGIDRHDRYANRN-TVFFDI-NMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGR 644 (1040)
Q Consensus 567 a~VQ~PQ~F~nid~~D~y~n~~-~vFfdi-~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~ 644 (1040)
+.|+.+.+..+ ... +.++. ..+... .+++. ... ..+ |.
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~~-------------~~~-~~~-~~---------------------- 196 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGAMGINHNFLPSV-------------MVA-RAL-GR---------------------- 196 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHHHHhhhhhhHHH-------------HHH-Hhc-cC----------------------
Confidence 89998644222 111 11111 011100 00000 000 000 00
Q ss_pred ccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCc
Q 039060 645 RKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTE 724 (1040)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~ 724 (1040)
..-..|++.+||+++++++||++..
T Consensus 197 --------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~----------------------- 221 (373)
T TIGR03472 197 --------------------------------ARFCFGATMALRRATLEAIGGLAAL----------------------- 221 (373)
T ss_pred --------------------------------CccccChhhheeHHHHHHcCChHHh-----------------------
Confidence 0012466677888888999998641
Q ss_pred cccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccc
Q 039060 725 WGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGS 785 (1040)
Q Consensus 725 WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~ 785 (1040)
..+++||++++.++..+||++.|.+... .....|+|++++++||.||++..
T Consensus 222 --------~~~~~ED~~l~~~i~~~G~~v~~~~~~v--~~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 --------AHHLADDYWLGELVRALGLRVVLAPVVV--DTDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred --------cccchHHHHHHHHHHHcCCeEEecchhh--hcCCCccCHHHHHHHHHHHHhhh
Confidence 1467899999999999999999986533 36777899999999999997443
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.87 E-value=6.1e-22 Score=212.04 Aligned_cols=166 Identities=15% Similarity=0.083 Sum_probs=105.6
Q ss_pred CCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCceEEEecCccccCCCchhh--hhh-hhhhhhhhhccccccCCC
Q 039060 529 LTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRKVCYVQFPQRFDGIDRHDR--YAN-RNTVFFDINMRGLDGIQG 604 (1040)
Q Consensus 529 ~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~nid~~D~--y~n-~~~vFfdi~~~gldg~qg 604 (1040)
.++++||+++|+|.+ ..|++|++++..| .|| +++.||..+...|...+-. +.+ +...++-....+...++.
T Consensus 71 ~a~~e~i~~~DaD~~-~~~~~l~~l~~~~~~~p----~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 71 PDDPEFILLVDADTK-FDPDSIVQLYKAMDKDP----EIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred cCCCCEEEEECCCCc-CCHhHHHHHHHHHHhCC----CEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCc
Confidence 368999999999999 5999999999887 688 8899999887776532211 111 000000111112222232
Q ss_pred -ccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCc
Q 039060 605 -PVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQ 683 (1040)
Q Consensus 605 -p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~ 683 (1040)
....|++.+|||++|...... + .+..++
T Consensus 146 ~~~~~G~~~~~R~~~l~~~~~~---------~-~~~~~~----------------------------------------- 174 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGDNGG---------K-GPLLDY----------------------------------------- 174 (244)
T ss_pred eEECCCceEEEEehhhcCCccc---------c-ccchhh-----------------------------------------
Confidence 234577778888888532100 0 000000
Q ss_pred chHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEE--eCCCcc
Q 039060 684 SAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIY--CMPKRA 761 (1040)
Q Consensus 684 s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY--~~~~~~ 761 (1040)
.+.++++.+ |+ +....+++||.+++++|..+||++.| ++.+.
T Consensus 175 --~~~~~~~~~-~~--------------------------------~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~a~- 218 (244)
T cd04190 175 --AYLTNTVDS-LH--------------------------------KKNNLDLGEDRILCTLLLKAGPKRKYLYVPGAV- 218 (244)
T ss_pred --ccccCcccc-hH--------------------------------HHHHHhHhcccceeHHHhccCCccEEEEecccE-
Confidence 001111111 10 12235799999999999999999999 76544
Q ss_pred cccccCCCCHHHHHHHHHHhhccchh
Q 039060 762 AFKGSAPINLSDRLNQVLRWALGSVE 787 (1040)
Q Consensus 762 af~G~aP~tl~~~l~QR~RWA~G~lQ 787 (1040)
++.++|+|+.++++||+||++|++.
T Consensus 219 -~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 219 -AETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred -EEEECCCCHHHHHHHhHhhhccccc
Confidence 4899999999999999999999864
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=1e-20 Score=195.47 Aligned_cols=227 Identities=16% Similarity=0.177 Sum_probs=154.9
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccccccc
Q 039060 334 IFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFTL 413 (1040)
Q Consensus 334 V~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs~ 413 (1040)
|+||+|| |+ ..+.+||.|++.++||.++++|+|+|||+++-|.+.+.+
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~---------------------------- 48 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEF---------------------------- 48 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHH----------------------------
Confidence 6899998 75 889999999999999988899999999998744332210
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCCC
Q 039060 414 KVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAEG 493 (1040)
Q Consensus 414 k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~~ 493 (1040)
. + + +
T Consensus 49 ------------------------~--------~--~------------------------~------------------ 52 (229)
T cd04192 49 ------------------------A--------A--A------------------------K------------------ 52 (229)
T ss_pred ------------------------H--------H--h------------------------C------------------
Confidence 0 0 0 0
Q ss_pred CCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCc
Q 039060 494 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQ 573 (1040)
Q Consensus 494 ~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ 573 (1040)
..|++.++.++. + ...+|+.|+|.++.. ++++||+++|+|.+ +.|++|.+++..|.++ ..+.|+.++
T Consensus 53 -~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 53 -PNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred -CCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 012355555443 1 245799999999986 57999999999998 5899999999987765 577888888
Q ss_pred cccCCCch-hhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCccccccccc
Q 039060 574 RFDGIDRH-DRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKH 652 (1040)
Q Consensus 574 ~F~nid~~-D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 652 (1040)
.+...+.. ..+......+......+..+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 154 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFM--------------------------------------------- 154 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccc---------------------------------------------
Confidence 77622211 11111011111111111111111111
Q ss_pred ccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcc
Q 039060 653 SANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWI 732 (1040)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ 732 (1040)
..|.+..|++++++++||+++.
T Consensus 155 ---------------------------~~g~~~~~rr~~~~~~ggf~~~------------------------------- 176 (229)
T cd04192 155 ---------------------------CNGANMAYRKEAFFEVGGFEGN------------------------------- 176 (229)
T ss_pred ---------------------------cccceEEEEHHHHHHhcCCccc-------------------------------
Confidence 0233445566666889998651
Q ss_pred cccccchHHHHHHHHhCCc-EEEEeCCCcccccccCCCCHHHHHHHHHHhhcc
Q 039060 733 YGSITEDILTGFKMHCRGW-RSIYCMPKRAAFKGSAPINLSDRLNQVLRWALG 784 (1040)
Q Consensus 733 ygsvTED~~tg~rLh~~GW-rsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 784 (1040)
....+||.++.+++..+|| ++.|+..+....+...|.+++++++||+||++|
T Consensus 177 ~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 1367899999999999999 999985544456889999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.84 E-value=3e-20 Score=191.39 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=146.8
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| |.. .+.++|.|+++++||. ++++|+|||+++-|.+.+.+.
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~----------------------- 51 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKL----------------------- 51 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHH-----------------------
Confidence 67999999999 764 4789999999999994 999999999987554422211
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
.++ ||.+
T Consensus 52 --------------------------------------~~~------------------------~~~~----------- 58 (196)
T cd02520 52 --------------------------------------IAK------------------------YPNV----------- 58 (196)
T ss_pred --------------------------------------HHH------------------------CCCC-----------
Confidence 000 0000
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV 569 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1040)
++.|+..+++.| ..+|++|||++++. ++++|++++|+|.. ..|++|.+++..+.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 133444443222 23689999999986 68999999999998 5899999999988888 67777
Q ss_pred ecCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccc
Q 039060 570 QFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKY 649 (1040)
Q Consensus 570 Q~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~ 649 (1040)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 34567777777666
Q ss_pred cccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCcccccc
Q 039060 650 SKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLEL 729 (1040)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~ev 729 (1040)
+++||++..
T Consensus 137 -------------------------------------------~~~ggf~~~---------------------------- 145 (196)
T cd02520 137 -------------------------------------------DAIGGFEAF---------------------------- 145 (196)
T ss_pred -------------------------------------------HhccChHHH----------------------------
Confidence 456776420
Q ss_pred CcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhcc
Q 039060 730 GWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALG 784 (1040)
Q Consensus 730 GW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G 784 (1040)
...+.||+++++++..+||++.|++.. .++...|.++.++++||.||++.
T Consensus 146 ---~~~~~eD~~l~~rl~~~G~~i~~~~~~--~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 146 ---ADYLAEDYFLGKLIWRLGYRVVLSPYV--VMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred ---hHHHHHHHHHHHHHHHcCCeEEEcchh--eeccCCcccHHHHHHHHHHHhcc
Confidence 124689999999999999999999764 35889999999999999999863
No 32
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=2.9e-17 Score=187.29 Aligned_cols=220 Identities=21% Similarity=0.363 Sum_probs=159.4
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCceEEEecCccccC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRKVCYVQFPQRFDG 577 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~VQ~PQ~F~n 577 (1040)
+.|-.|.+ |...||||+....|.-| +..+++++||||.++ ..+.+-+.+..| .+| +.|.+||-..-.|
T Consensus 214 ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P----~aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANP----DAGLIQTSPKASG 282 (736)
T ss_pred eeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCC----CCceeecchhhcC
Confidence 67777766 66789999999999987 778999999999995 889999999888 578 7889999766555
Q ss_pred CCchhhhhh----hhhhhhhhhccccccCCC--ccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccc
Q 039060 578 IDRHDRYAN----RNTVFFDINMRGLDGIQG--PVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSK 651 (1040)
Q Consensus 578 id~~D~y~n----~~~vFfdi~~~gldg~qg--p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~ 651 (1040)
-| ..|+- ..+||=-+.-.|+..||+ ..|-|.|++.|-+|+.
T Consensus 283 g~--TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~------------------------------- 329 (736)
T COG2943 283 GD--TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFI------------------------------- 329 (736)
T ss_pred cc--hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhH-------------------------------
Confidence 33 22221 123444455567777776 3577777777777763
Q ss_pred cccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCc
Q 039060 652 HSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGW 731 (1040)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW 731 (1040)
|.-|.|.- ..+...|.
T Consensus 330 ------------------------------------------~hcgLp~L------------------pG~~pFgG---- 345 (736)
T COG2943 330 ------------------------------------------EHCGLPPL------------------PGRGPFGG---- 345 (736)
T ss_pred ------------------------------------------HhcCCCCC------------------CCCCCCCc----
Confidence 22222110 00111121
Q ss_pred ccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccchh
Q 039060 732 IYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLERF 811 (1040)
Q Consensus 732 ~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QRL 811 (1040)
..++.|+.-+-.|.+.||-+ .+.+++...+++.|.|+.|++++-+||++|++|-+. ++ ..++|.|..|+
T Consensus 346 --~ilSHDfvEAALmRRaGW~v-~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r-----l~---~~~GlHwvsR~ 414 (736)
T COG2943 346 --HILSHDFVEAALMRRAGWGV-WIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR-----LF---LVKGLHWVSRA 414 (736)
T ss_pred --cccchHHHHHHHHhhcCceE-EEeccCCCchhhCCchHHHHHhhhhHhhhcchhhce-----ee---ccCCccHHHHH
Confidence 35889999999999999955 444667788999999999999999999999999874 33 24679999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHH
Q 039060 812 AYVNTTIYPFTSIPLLAYCVLPAICL 837 (1040)
Q Consensus 812 ~Yl~~~ly~l~slp~liy~llP~l~L 837 (1040)
.++.+++.|+++...++++++-.+..
T Consensus 415 h~~tGVmsYlsaPlWfl~ll~g~al~ 440 (736)
T COG2943 415 HFLTGVMSYLSAPLWFLFLLLGTALQ 440 (736)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999998887765555554444433
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.82 E-value=4.9e-19 Score=185.07 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=109.6
Q ss_pred CCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhh
Q 039060 513 HKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFF 592 (1040)
Q Consensus 513 h~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFf 592 (1040)
..|++|+|.+++. ++++||+++|+|.+ +.|++|++++..|.|| +++.|+..+.+.+.+.+ .+......++
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~~~-~~~~~~~~~~ 132 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPRDS-KWSFLAAEYL 132 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCccc-HHHHHHHHHH
Confidence 4599999999986 58999999999999 6899999999998888 89999999888776322 1111111111
Q ss_pred hh----hccccccCCC-ccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChh
Q 039060 593 DI----NMRGLDGIQG-PVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDD 667 (1040)
Q Consensus 593 di----~~~gldg~qg-p~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1040)
.. ..+.....++ ....|...++||++|.... +++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~----------------------------------------~~~- 171 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFL----------------------------------------FLE- 171 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhh----------------------------------------hHH-
Confidence 11 0011111111 1123444456666652100 000
Q ss_pred hHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHH
Q 039060 668 KELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMH 747 (1040)
Q Consensus 668 ~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh 747 (1040)
. |. ..-.+|+. ....||.+++.+++
T Consensus 172 --------~----------~~---~~~~~~~~----------------------------------~~~~eD~~l~~~~~ 196 (235)
T cd06434 172 --------E----------FT---NETFMGRR----------------------------------LNAGDDRFLTRYVL 196 (235)
T ss_pred --------H----------hh---hhhhcCCC----------------------------------CCcCchHHHHHHHH
Confidence 0 00 00112211 25789999999999
Q ss_pred hCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchh
Q 039060 748 CRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVE 787 (1040)
Q Consensus 748 ~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQ 787 (1040)
.+||+..|++.... +...|.++.++++||+||++|..+
T Consensus 197 ~~g~~~~~~~~~~~--~~~~~~~~~~~~~q~~Rw~~~~~~ 234 (235)
T cd06434 197 SHGYKTVYQYTSEA--YTETPENYKKFLKQQLRWSRSNWR 234 (235)
T ss_pred HCCCeEEEecCCeE--EEEcchhHHHHHHHhhhhhhcccC
Confidence 99999999976543 677999999999999999999854
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.81 E-value=8.8e-18 Score=192.16 Aligned_cols=242 Identities=20% Similarity=0.201 Sum_probs=153.3
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
++..|+|+|+||+|| |. ..+.+++.|+++++||. +++|+|+|||+++-|.+.+.+.
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~------------------- 91 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAA------------------- 91 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHH-------------------
Confidence 467999999999999 76 78899999999999995 5899999999998654432221
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
.++ .|..
T Consensus 92 ------------------------------------------~~~---~~~~---------------------------- 98 (384)
T TIGR03469 92 ------------------------------------------ARA---YGRG---------------------------- 98 (384)
T ss_pred ------------------------------------------HHh---cCCC----------------------------
Confidence 000 0000
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCC-CCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLT-NAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGR 564 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~t-ngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~ 564 (1040)
+++.++..+.+|. .-..|+.|+|.+++.+.... .+|+|+.+|+|.. ++|++|++++..+.++
T Consensus 99 -----------~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 99 -----------DRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred -----------CcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 1244444333322 34579999999998742111 1899999999998 5999999999998876
Q ss_pred ceEEEecCccccCCCchhhhhh-hhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCC
Q 039060 565 KVCYVQFPQRFDGIDRHDRYAN-RNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFG 643 (1040)
Q Consensus 565 ~va~VQ~PQ~F~nid~~D~y~n-~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~ 643 (1040)
++++|....++......++.-. ....++. .+|.+.-. ..+..
T Consensus 162 ~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~---~~~~~---------- 204 (384)
T TIGR03469 162 GLDLVSLMVRLRCESFWEKLLIPAFVFFFQ------------------------KLYPFRWV---NDPRR---------- 204 (384)
T ss_pred CCCEEEecccccCCCHHHHHHHHHHHHHHH------------------------Hhcchhhh---cCCCc----------
Confidence 3455554433321110011000 0000000 00100000 00000
Q ss_pred cccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccC
Q 039060 644 RRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKT 723 (1040)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T 723 (1040)
...--+|++..+++++++++||+++
T Consensus 205 --------------------------------~~~~~~G~~~lirr~~~~~vGGf~~----------------------- 229 (384)
T TIGR03469 205 --------------------------------RTAAAAGGCILIRREALERIGGIAA----------------------- 229 (384)
T ss_pred --------------------------------cceeecceEEEEEHHHHHHcCCHHH-----------------------
Confidence 0001246667788888899999764
Q ss_pred ccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhh
Q 039060 724 EWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWA 782 (1040)
Q Consensus 724 ~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA 782 (1040)
.+..+.||++++.++.++|+++.+...... .....-+++.+.++|+.||+
T Consensus 230 --------~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~-~s~r~~~~~~~~~~~~~r~~ 279 (384)
T TIGR03469 230 --------IRGALIDDCTLAAAVKRSGGRIWLGLAART-RSLRPYDGLGEIWRMIARTA 279 (384)
T ss_pred --------HhhCcccHHHHHHHHHHcCCcEEEEecCce-EEEEecCCHHHHHHHHHHhH
Confidence 123578999999999999999999865332 23345579999999999994
No 35
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.80 E-value=1.9e-18 Score=183.03 Aligned_cols=223 Identities=19% Similarity=0.319 Sum_probs=153.1
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
....|.|.|+||+|| |+ ..+.++|.|+++++||.++++++|+|||+++.|.+.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-------------------- 80 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-------------------- 80 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH--------------------
Confidence 456889999999998 75 788999999999999988899999999998744331111
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
+.+ +
T Consensus 81 -------------------------------~~~----------~----------------------------------- 84 (251)
T cd06439 81 -------------------------------YAD----------K----------------------------------- 84 (251)
T ss_pred -------------------------------Hhh----------C-----------------------------------
Confidence 000 0
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCc
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRK 565 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~ 565 (1040)
++.++..+++ ..|++|+|.+++. +++++|+++|+|.++ .|++|++.+..|.++ +
T Consensus 85 ------------~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~ 138 (251)
T cd06439 85 ------------GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADP----S 138 (251)
T ss_pred ------------cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCC----C
Confidence 1344444432 3499999999986 578999999999995 799999999999877 7
Q ss_pred eEEEecCccccCCCchhhhhhhhhhhhhh--hccccccCCCcccccccc--chhhhhhcCCCCCCCCCCCCCccCCCCCC
Q 039060 566 VCYVQFPQRFDGIDRHDRYANRNTVFFDI--NMRGLDGIQGPVYVGTGC--VFRRQALYGYEPPKGPKRPKMVSCDCCPC 641 (1040)
Q Consensus 566 va~VQ~PQ~F~nid~~D~y~n~~~vFfdi--~~~gldg~qgp~yvGTGc--vfRR~ALyG~~p~~~~~~~~~~~~~~~~c 641 (1040)
+++|+......+.+. .......++.. ........-+-.+.++|| ++||+++
T Consensus 139 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~---------------------- 193 (251)
T cd06439 139 VGAVSGELVIVDGGG---SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELF---------------------- 193 (251)
T ss_pred ccEEEeEEEecCCcc---cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHh----------------------
Confidence 888888776654332 00000111110 000000000111112222 2333333
Q ss_pred CCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccc
Q 039060 642 FGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYED 721 (1040)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~ 721 (1040)
+ |++
T Consensus 194 ---------------------------------------------------~---~~~---------------------- 197 (251)
T cd06439 194 ---------------------------------------------------R---PLP---------------------- 197 (251)
T ss_pred ---------------------------------------------------c---CCC----------------------
Confidence 2 222
Q ss_pred cCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhH
Q 039060 722 KTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEI 788 (1040)
Q Consensus 722 ~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQi 788 (1040)
.....||+++++++..+||+++|++... .+...|.++.++++|+.||+.|++|.
T Consensus 198 -----------~~~~~eD~~l~~~~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~g~~~~ 251 (251)
T cd06439 198 -----------ADTINDDFVLPLRIARQGYRVVYEPDAV--AYEEVAEDGSEEFRRRVRIAAGNLQA 251 (251)
T ss_pred -----------cccchhHHHHHHHHHHcCCeEEeccccE--EEEeCcccHHHHHHHHHHHHhccccC
Confidence 2356799999999999999999997644 48999999999999999999999883
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.74 E-value=1.5e-16 Score=166.63 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=153.8
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccc
Q 039060 331 PVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMY 410 (1040)
Q Consensus 331 ~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~Y 410 (1040)
.|+|+||+|| |+ ..+.+|+.++++++||..+.+|+|+|||+++-|.+.+.
T Consensus 1 ~~sIiip~~n---~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-------------------------- 50 (249)
T cd02525 1 FVSIIIPVRN---EE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-------------------------- 50 (249)
T ss_pred CEEEEEEcCC---ch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH--------------------------
Confidence 3899999998 75 67899999999999997789999999999863222110
Q ss_pred cccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCC
Q 039060 411 FTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHD 490 (1040)
Q Consensus 411 Fs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d 490 (1040)
.+.++
T Consensus 51 -----------------------------------~~~~~---------------------------------------- 55 (249)
T cd02525 51 -----------------------------------EYAAK---------------------------------------- 55 (249)
T ss_pred -----------------------------------HHHhc----------------------------------------
Confidence 11100
Q ss_pred CCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEe
Q 039060 491 AEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQ 570 (1040)
Q Consensus 491 ~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ 570 (1040)
.|.+.++..+ ...+++|+|.+++. +++++|+++|+|.+ +.|++|.+.+.++.++ ++..|+
T Consensus 56 -----~~~v~~i~~~------~~~~~~a~N~g~~~----a~~d~v~~lD~D~~-~~~~~l~~~~~~~~~~----~~~~v~ 115 (249)
T cd02525 56 -----DPRIRLIDNP------KRIQSAGLNIGIRN----SRGDIIIRVDAHAV-YPKDYILELVEALKRT----GADNVG 115 (249)
T ss_pred -----CCeEEEEeCC------CCCchHHHHHHHHH----hCCCEEEEECCCcc-CCHHHHHHHHHHHhcC----CCCEEe
Confidence 1235556533 23488999999986 48999999999998 5999999999888776 455555
Q ss_pred cCccccCCCchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCccccccc
Q 039060 571 FPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYS 650 (1040)
Q Consensus 571 ~PQ~F~nid~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~ 650 (1040)
.+....+.+ .+.......+. .+ .+.+....+.... .. .
T Consensus 116 ~~~~~~~~~---~~~~~~~~~~~----------~~--~~~~~~~~~~~~~-------~~------~-------------- 153 (249)
T cd02525 116 GPMETIGES---KFQKAIAVAQS----------SP--LGSGGSAYRGGAV-------KI------G-------------- 153 (249)
T ss_pred cceecCCCC---hHHHHHHHHhh----------ch--hccCCcccccccc-------cc------c--------------
Confidence 543322211 11100000000 00 0000000000000 00 0
Q ss_pred ccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccC
Q 039060 651 KHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELG 730 (1040)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evG 730 (1040)
....|...+++++++.++||+++.
T Consensus 154 ---------------------------~~~~~~~~~~~~~~~~~~g~~~~~----------------------------- 177 (249)
T cd02525 154 ---------------------------YVDTVHHGAYRREVFEKVGGFDES----------------------------- 177 (249)
T ss_pred ---------------------------cccccccceEEHHHHHHhCCCCcc-----------------------------
Confidence 001233445677778889988752
Q ss_pred cccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhh
Q 039060 731 WIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFS 791 (1040)
Q Consensus 731 W~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~s 791 (1040)
....||.+++++++++|+++.|++... .....+.+++++.+|+.||+.|..|.+.+
T Consensus 178 ---~~~~eD~~l~~r~~~~G~~~~~~~~~~--~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 178 ---LVRNEDAELNYRLRKAGYKIWLSPDIR--VYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ---cCccchhHHHHHHHHcCcEEEEcCCeE--EEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 134699999999999999999997644 36778899999999999999999999974
No 37
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.67 E-value=7.8e-16 Score=158.66 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=81.0
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhc-------CCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEec
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSG-------VLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQF 571 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSa-------v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~ 571 (1040)
+.++.++... ....|++|+|++++.+. .-..+++|+++|+|.. +.|++|++++.+|.|| +++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEee
Confidence 6666654211 23469999999998631 0113589999999999 6999999988889888 8999999
Q ss_pred CccccCCCchh--h-hhhhhhhhhhhhccccccCCCccccccccchhhhhh
Q 039060 572 PQRFDGIDRHD--R-YANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQAL 619 (1040)
Q Consensus 572 PQ~F~nid~~D--~-y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~AL 619 (1040)
+.++.|.+.+- + +..+...++.+++.++...+...+.|+|++|||++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 99998865442 2 122333344566666666655557889999988877
No 38
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.66 E-value=4.6e-16 Score=159.29 Aligned_cols=138 Identities=30% Similarity=0.397 Sum_probs=103.5
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhhhhhhc----cccccCCC-cccc
Q 039060 534 FMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVFFDINM----RGLDGIQG-PVYV 608 (1040)
Q Consensus 534 ~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vFfdi~~----~gldg~qg-p~yv 608 (1040)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|..+++ .++...+.+.++|+... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 5899999999 5899999999999888 8999999999863 34445555555553221 11112222 2234
Q ss_pred ccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHH
Q 039060 609 GTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFV 688 (1040)
Q Consensus 609 GTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~ 688 (1040)
|+|.++||+++
T Consensus 74 G~~~~~r~~~l--------------------------------------------------------------------- 84 (193)
T PF13632_consen 74 GSGMLFRREAL--------------------------------------------------------------------- 84 (193)
T ss_pred CcceeeeHHHH---------------------------------------------------------------------
Confidence 55555555444
Q ss_pred hhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCC
Q 039060 689 TSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAP 768 (1040)
Q Consensus 689 ~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP 768 (1040)
+++||++. ..+++||+++++++..+||++.|+++.. ++.++|
T Consensus 85 ----~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~~~~~~~~~~--~~~~~p 126 (193)
T PF13632_consen 85 ----REVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGYRIVYVPDAI--VYTEAP 126 (193)
T ss_pred ----HHhCcccc--------------------------------cccccchHHHHHHHHHCCCEEEEecccc--eeeeCC
Confidence 67776541 3689999999999999999999997643 589999
Q ss_pred CCHHHHHHHHHHhhccc
Q 039060 769 INLSDRLNQVLRWALGS 785 (1040)
Q Consensus 769 ~tl~~~l~QR~RWA~G~ 785 (1040)
.|+.++++||+||..|.
T Consensus 127 ~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 127 PTFRAFIRQRRRWARGA 143 (193)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999999998
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.56 E-value=2.9e-14 Score=145.31 Aligned_cols=102 Identities=20% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCchhhhHHHHHHhc-CCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhh---hhhh
Q 039060 512 HHKKAGAMNALVRVSG-VLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDR---YANR 587 (1040)
Q Consensus 512 hh~KAGALNallrvSa-v~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~---y~n~ 587 (1040)
+..|++|+|++++... .-+++++|+++|+|.+ +.|++|++++..|.+. ...||......+.+.+-. +.-.
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~~~~~~~~~~ 134 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPDDSWITRLYAFA 134 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccCHHHHHHHHH
Confidence 3469999999988641 1247999999999999 5899999999988652 246887766665443211 1112
Q ss_pred hhhhhhhhccccccCCCc-cccccccchhhhhh
Q 039060 588 NTVFFDINMRGLDGIQGP-VYVGTGCVFRRQAL 619 (1040)
Q Consensus 588 ~~vFfdi~~~gldg~qgp-~yvGTGcvfRR~AL 619 (1040)
...++.+...++..+.+. .+.|+|.+|||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l 167 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVL 167 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHH
Confidence 222333333344444443 34566666666555
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.54 E-value=1.3e-13 Score=140.71 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=89.1
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| |.+..+.+|+.|++++.|| .++|+|+|||+++-|.+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHHH------------------------
Confidence 67999999998 6667899999999999998 579999999997632221111
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
+| .++
T Consensus 52 --------------------------~~----------~~~--------------------------------------- 56 (202)
T cd04184 52 --------------------------KY----------AAQ--------------------------------------- 56 (202)
T ss_pred --------------------------HH----------Hhc---------------------------------------
Confidence 00 000
Q ss_pred CCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCceEE
Q 039060 490 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRKVCY 568 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~va~ 568 (1040)
.+++.++..+.+ ..++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++..+ .+| ++++
T Consensus 57 ------~~~~~~~~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREEN-----GGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEcccC-----CCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 012445544443 3589999999986 57899999999998 6999999999987 777 5667
Q ss_pred EecCcc
Q 039060 569 VQFPQR 574 (1040)
Q Consensus 569 VQ~PQ~ 574 (1040)
|+....
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 765444
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.48 E-value=7.9e-13 Score=135.16 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=51.4
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCceEEEecCccccC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGRKVCYVQFPQRFDG 577 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~PQ~F~n 577 (1040)
+.|+.+++.. .+++|+|.+++. +.|+||+++|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~-----G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNR-----GLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCccc-----cHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 5566665533 489999999986 58999999999998 58999999999884 56 6778877655443
No 42
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.35 E-value=1.5e-11 Score=123.73 Aligned_cols=54 Identities=19% Similarity=0.069 Sum_probs=42.5
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCCceEEEecCcccc
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC-FLMDPQTGRKVCYVQFPQRFD 576 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F~ 576 (1040)
.+++|+|.+++. ++++||+++|+|.+ ..++.+.+.+. +..++ +..+|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEE
Confidence 489999999986 58999999999999 47899999984 45666 556666655443
No 43
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.34 E-value=4e-11 Score=132.14 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=83.9
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccc
Q 039060 333 DIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFT 412 (1040)
Q Consensus 333 DV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs 412 (1040)
.|+||+|| |++..+.+||.|+++..||....+|+|+|||+++-|.+.+.+
T Consensus 1 SIIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~--------------------------- 50 (299)
T cd02510 1 SVIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE--------------------------- 50 (299)
T ss_pred CEEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH---------------------------
Confidence 48999999 877999999999999999866679999999998754442211
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCC
Q 039060 413 LKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAE 492 (1040)
Q Consensus 413 ~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~ 492 (1040)
+.. .
T Consensus 51 --------------------------~~~--------~------------------------------------------ 54 (299)
T cd02510 51 --------------------------EYY--------K------------------------------------------ 54 (299)
T ss_pred --------------------------HHH--------h------------------------------------------
Confidence 000 0
Q ss_pred CCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 039060 493 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMD 559 (1040)
Q Consensus 493 ~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1040)
...|++.++..+++ ..++.|.|.+++. +.|+||+.+|+|.++ .+++|.+++-.+..
T Consensus 55 -~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~~-~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 -KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCEV-NVGWLEPLLARIAE 110 (299)
T ss_pred -hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCccc-CccHHHHHHHHHHh
Confidence 01133666665543 3489999999996 689999999999995 89999999998754
No 44
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.32 E-value=2.4e-11 Score=124.56 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=88.7
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcccccc
Q 039060 333 DIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEMYFT 412 (1040)
Q Consensus 333 DV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~YFs 412 (1040)
+|+||||| |+ ..+.++|.|++.++|| +++|+|+|||+++-|.+.+.+.
T Consensus 1 sIvIp~yn---~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~-------------------------- 48 (214)
T cd04196 1 AVLMATYN---GE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEY-------------------------- 48 (214)
T ss_pred CEEEEecC---cH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHH--------------------------
Confidence 48999998 66 7789999999999999 7999999999987554432211
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCCCCC
Q 039060 413 LKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGHDAE 492 (1040)
Q Consensus 413 ~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~d~~ 492 (1040)
++ .||
T Consensus 49 -----------------------------------~~------------------------~~~---------------- 53 (214)
T cd04196 49 -----------------------------------ID------------------------KDP---------------- 53 (214)
T ss_pred -----------------------------------Hh------------------------cCC----------------
Confidence 00 010
Q ss_pred CCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHh-hcCCCCCCceEEEec
Q 039060 493 GNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCF-LMDPQTGRKVCYVQF 571 (1040)
Q Consensus 493 ~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcf-f~Dp~~g~~va~VQ~ 571 (1040)
+.+.++..++ .+.+++|+|.+++. ++++||+++|+|.+ ..|+.|.+.+.. +.+| +.+++..
T Consensus 54 ----~~~~~~~~~~-----~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~ 115 (214)
T cd04196 54 ----FIIILIRNGK-----NLGVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYS 115 (214)
T ss_pred ----ceEEEEeCCC-----CccHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEec
Confidence 1244444444 34589999999885 68999999999998 589999999998 4555 6677777
Q ss_pred Ccccc
Q 039060 572 PQRFD 576 (1040)
Q Consensus 572 PQ~F~ 576 (1040)
...+.
T Consensus 116 ~~~~~ 120 (214)
T cd04196 116 DLELV 120 (214)
T ss_pred CcEEE
Confidence 65543
No 45
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.29 E-value=1.1e-10 Score=120.85 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=35.4
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCCh
Q 039060 332 VDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASI 377 (1040)
Q Consensus 332 VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~ 377 (1040)
|+|+||+|| |+ ..+.+||.|++++.|+ ..+|+|+|||+++
T Consensus 1 vsvii~~~n---~~-~~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EA-ENLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cH-HHHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 689999998 76 4789999999999995 6899999999976
No 46
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.28 E-value=1.1e-10 Score=117.37 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=36.5
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
.|++|+|.+++. ++++||+.+|+|.+ +.|++|.+.+.++ ++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 689999999986 68999999999998 5899999999887 44
No 47
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.27 E-value=2.8e-11 Score=125.15 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=109.7
Q ss_pred CCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCchhhhhhhhhhh
Q 039060 512 HHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDRHDRYANRNTVF 591 (1040)
Q Consensus 512 hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~~D~y~n~~~vF 591 (1040)
.+.|..||..+++. ..++++|+++|+|+.+ +|++|++++..|.|| ++++|..+.++.+.+. ..+.-...|
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~--~~~~l~~~~ 84 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLADP----GVGLVTGLPRGVPARG--FWSRLEAAF 84 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhCC----CCcEEEecccccCCcC--HHHHHHHHH
Confidence 57899999999885 2689999999999995 899999999999999 7889988777655432 111111122
Q ss_pred hhhhccccc--cCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChhhH
Q 039060 592 FDINMRGLD--GIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKE 669 (1040)
Q Consensus 592 fdi~~~gld--g~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1040)
+. ..++.- .-..++
T Consensus 85 ~~-~~~~~~~a~~~~~~--------------------------------------------------------------- 100 (175)
T PF13506_consen 85 FN-FLPGVLQALGGAPF--------------------------------------------------------------- 100 (175)
T ss_pred Hh-HHHHHHHHhcCCCc---------------------------------------------------------------
Confidence 21 111100 000111
Q ss_pred HHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhC
Q 039060 670 LLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCR 749 (1040)
Q Consensus 670 ~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~ 749 (1040)
.+|.+..+++++|+++||+..- .+.++||+.+|-+++.+
T Consensus 101 ----------~~G~~m~~rr~~L~~~GG~~~l-------------------------------~~~ladD~~l~~~~~~~ 139 (175)
T PF13506_consen 101 ----------AWGGSMAFRREALEEIGGFEAL-------------------------------ADYLADDYALGRRLRAR 139 (175)
T ss_pred ----------eecceeeeEHHHHHHcccHHHH-------------------------------hhhhhHHHHHHHHHHHC
Confidence 2456667777888889987531 14689999999999999
Q ss_pred CcEEEEeCCCcccccccCC----CCHHHHHHHHHHhhc
Q 039060 750 GWRSIYCMPKRAAFKGSAP----INLSDRLNQVLRWAL 783 (1040)
Q Consensus 750 GWrsvY~~~~~~af~G~aP----~tl~~~l~QR~RWA~ 783 (1040)
||++++.+... .....| .++.++++++.||++
T Consensus 140 G~~v~~~~~~v--~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 140 GYRVVLSPYPV--VQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred CCeEEEcchhe--eecccCccccccHHHHHHHHHhhcC
Confidence 99999986432 245555 589999999999985
No 48
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.25 E-value=1.8e-10 Score=120.46 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=37.1
Q ss_pred EEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHH
Q 039060 334 IFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 334 V~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
|+||+|| ++ ..+..||.|++++.|| +.++|+|+|||+++-|.+
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t~~ 43 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKSAE 43 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccHHH
Confidence 6899998 54 7999999999999998 469999999999885543
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.25 E-value=3.1e-10 Score=121.35 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=45.9
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFP 572 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 572 (1040)
+.++.+++.. .|++|+|++++. +.|+||+.+|+|.. .+|++|.+++..+.++ +..+|...
T Consensus 70 v~~~~~~~n~-----G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKL-----GLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCC-----CHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 4555554433 489999999985 58999999999999 6999999999888765 34555543
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.24 E-value=2e-10 Score=112.29 Aligned_cols=51 Identities=22% Similarity=0.136 Sum_probs=41.3
Q ss_pred CCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCceEEEecC
Q 039060 513 HKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGRKVCYVQFP 572 (1040)
Q Consensus 513 h~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~P 572 (1040)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +| +++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 3589999999986 48999999999999 58999999987554 44 66677554
No 51
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.22 E-value=2.9e-09 Score=126.32 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=45.7
Q ss_pred cccchHHHHHHHHhC--CcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHH
Q 039060 735 SITEDILTGFKMHCR--GWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIF 789 (1040)
Q Consensus 735 svTED~~tg~rLh~~--GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil 789 (1040)
.+.||-.++..|.++ |||..|+..+.+ +..+|+|++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhH
Confidence 578999888777776 899999987654 89999999999999999999998554
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.20 E-value=7.1e-10 Score=115.12 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=46.1
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFP 572 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~P 572 (1040)
+.++..+++. .|++|+|.+++. +.+++|+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n~-----G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKR-----GLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCC-----ChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 4445555433 489999999986 57899999999998 5899999999987766 34455554
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.18 E-value=4.4e-10 Score=115.46 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=46.8
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccc
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRF 575 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 575 (1040)
+.|+.-++. +..+.++|.+++..- ...+++++++|+|.+ +.|++|++++..+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 445555442 347888888887532 357899999999999 5899999999988777 55655 34343
No 54
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.17 E-value=2.7e-10 Score=110.10 Aligned_cols=63 Identities=32% Similarity=0.436 Sum_probs=47.0
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCCceEEEecCccc
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC-FLMDPQTGRKVCYVQFPQRF 575 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~PQ~F 575 (1040)
++++..++. ..|+.|+|.+++. +++++|+++|+|.++ .+++|.+.+. ++.++ +++.|......
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~----~~~~v~~~~~~ 118 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFADP----KVGAVQGRVRV 118 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhccCC----CeeeEeeeEEE
Confidence 455555543 3499999999986 489999999999985 8999999944 55666 56666654443
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.15 E-value=2.6e-10 Score=119.61 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHH---Hhh-cCCCCCCceEEEecCcc
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESM---CFL-MDPQTGRKVCYVQFPQR 574 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am---cff-~Dp~~g~~va~VQ~PQ~ 574 (1040)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+++ ..+ .+| .++.+ .|+.
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~~~~----~~~~~-~~~~ 116 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSDKNS----NIGAV-GPRI 116 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhccCC----CeEEE-eeeE
Confidence 56666665433 99999999986321 15699999999999 5899999985 333 344 55554 4544
Q ss_pred c
Q 039060 575 F 575 (1040)
Q Consensus 575 F 575 (1040)
.
T Consensus 117 ~ 117 (237)
T cd02526 117 I 117 (237)
T ss_pred E
Confidence 3
No 56
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.11 E-value=1e-10 Score=113.44 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=72.5
Q ss_pred cEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccC
Q 039060 498 RLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDG 577 (1040)
Q Consensus 498 ~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1040)
++.|+.+++ +. .+++|+|.+++. +.++||+.+|+|.++ .+++|.+.+.++.+. +..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKN--PPDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHC--TTEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhC--CCcEEEEEEEEecCC
Confidence 488999887 33 699999999996 688999999999995 788999999999874 123444433333332
Q ss_pred CCchhhhh--hhhhhhhhhhccccccCCCccccccccchhhhhhc
Q 039060 578 IDRHDRYA--NRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALY 620 (1040)
Q Consensus 578 id~~D~y~--n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALy 620 (1040)
........ ......+............+.++|.+.++||+++-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 22111111 01123333344455566778899999999999883
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.09 E-value=3.9e-11 Score=98.76 Aligned_cols=48 Identities=38% Similarity=0.982 Sum_probs=30.5
Q ss_pred cccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
|.+|.+++ +++|..|.+| ||+|.|||.||...++++++.||+||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 77899997 8899999999 999999999999999999999999999996
No 58
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.02 E-value=5.8e-09 Score=117.82 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCc
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAP 407 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~P 407 (1040)
..|.|.|+||+|| ++ ..+.+||.|++++.|+ .++|+|+|||+++-|.+.+.+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~~~---------------------- 55 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIAKH---------------------- 55 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHHHH----------------------
Confidence 3588999999999 54 6899999999999997 689999999998754332211
Q ss_pred ccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCC
Q 039060 408 EMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSG 487 (1040)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 487 (1040)
|.+ +
T Consensus 56 -----------------------------~~~----------~------------------------------------- 59 (328)
T PRK10073 56 -----------------------------YAE----------N------------------------------------- 59 (328)
T ss_pred -----------------------------HHh----------h-------------------------------------
Confidence 100 0
Q ss_pred CCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 488 GHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
.|++.++..+ ..+.++|.|.++.. ++|+||+.+|+|-++ .|+.|.+.+..+.++
T Consensus 60 --------~~~i~vi~~~------n~G~~~arN~gl~~----a~g~yi~flD~DD~~-~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 60 --------YPHVRLLHQA------NAGVSVARNTGLAV----ATGKYVAFPDADDVV-YPTMYETLMTMALED 113 (328)
T ss_pred --------CCCEEEEECC------CCChHHHHHHHHHh----CCCCEEEEECCCCcc-ChhHHHHHHHHHHhC
Confidence 1235555432 23589999999986 689999999999995 899999999887654
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.01 E-value=6.1e-09 Score=108.31 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCcc
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQR 574 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~ 574 (1040)
.|++|+|.+++. +.+++|+.+|+|.. ..|+++.+.+..+.++ ....|.....
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 489999999996 57899999999998 6899999999987654 2344544433
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.97 E-value=1.9e-08 Score=111.50 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=82.9
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCc
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAP 407 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~P 407 (1040)
..|.|.|+||||| ++ ..+.+||.|++++.|| .++++|+|||++. .+.+. ++++
T Consensus 3 ~~p~VSVIip~yN---~~-~~l~~~l~Svl~Qt~~--~~EiIVVDDgS~~--~~~~~---~~~~---------------- 55 (279)
T PRK10018 3 DNPLISIYMPTWN---RQ-QLAIRAIKSVLRQDYS--NWEMIIVDDCSTS--WEQLQ---QYVT---------------- 55 (279)
T ss_pred CCCEEEEEEEeCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCC--HHHHH---HHHH----------------
Confidence 4688999999999 66 4567999999999998 5899999999973 22111 1100
Q ss_pred ccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCC
Q 039060 408 EMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSG 487 (1040)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 487 (1040)
+.
T Consensus 56 ------------------------------------------~~------------------------------------ 57 (279)
T PRK10018 56 ------------------------------------------AL------------------------------------ 57 (279)
T ss_pred ------------------------------------------Hc------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 039060 488 GHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMD 559 (1040)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1040)
.-|++.|+..++. ..++.|+|.++.. ++|+||+.+|+|.+. .|+.|.+.+-++..
T Consensus 58 -------~~~ri~~i~~~~n-----~G~~~a~N~gi~~----a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 58 -------NDPRITYIHNDIN-----SGACAVRNQAIML----AQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred -------CCCCEEEEECCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 0034777776653 3489999999985 689999999999994 89999998887653
No 61
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.91 E-value=3.2e-08 Score=107.48 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcC-CCCCCCeEEEEecCCCChhhHH
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAM-DYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~-dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
|.|.|+||||| |+ ..+..|+.|++++ ..+...++|+|+|||+++-|.+
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~ 49 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTRE 49 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHH
Confidence 57999999998 64 6789999999864 2233479999999999986544
No 62
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.88 E-value=2e-08 Score=100.98 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=50.1
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDG 577 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~n 577 (1040)
+.++..+++.| |++|+|.+++. +.+++|+++|+|-. ..|++|.+.+..+..+ ...+|+.+....+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45555555444 99999999986 57899999999998 5999999999986654 4566777765544
No 63
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.84 E-value=5e-08 Score=106.47 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=49.1
Q ss_pred cEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccc
Q 039060 498 RLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRF 575 (1040)
Q Consensus 498 ~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F 575 (1040)
.+.|+..++.. ..|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+..+..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 36677665543 4899999998863 1136899999999999 5799999999887542 22677775 4433
No 64
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.71 E-value=4.5e-07 Score=102.93 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcC------CCCCCCeEEEEecCCCChhhHH
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAM------DYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~------dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
....|.|+|+||+|| |. ..+..++.++.+. ++|...++|+|+|||+++-|.+
T Consensus 66 ~~~~~~isVVIP~yN---e~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~ 123 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN---EE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK 123 (333)
T ss_pred CCCCeEEEEEEeeCC---CH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHH
Confidence 356789999999999 76 4577888877653 3455578999999999986655
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.67 E-value=2e-07 Score=94.40 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=62.5
Q ss_pred EEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCC
Q 039060 499 LVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGI 578 (1040)
Q Consensus 499 lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~ni 578 (1040)
+.++..++ ...|++|+|++++. +.+++|+.+|+|.. ..+++|.+++..+ ++. .++.+.+... .+.
T Consensus 57 i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~-~~~--~~~v~g~~~~--~~~ 121 (181)
T cd04187 57 VKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAKW-EEG--YDVVYGVRKN--RKE 121 (181)
T ss_pred EEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHHH-hCC--CcEEEEEecC--Ccc
Confidence 55555544 23599999999986 57899999999998 5899999999874 432 2444333222 221
Q ss_pred CchhhhhhhhhhhhhhhccccccCCCccccccccchhhhhhc
Q 039060 579 DRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALY 620 (1040)
Q Consensus 579 d~~D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALy 620 (1040)
....++.+. .++. ......+..-+...|+..++||+++-
T Consensus 122 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 122 SWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred hHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 111122111 1111 11222334445566778899999984
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.64 E-value=6.3e-07 Score=84.57 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCCceEEEecC
Q 039060 512 HHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC-FLMDPQTGRKVCYVQFP 572 (1040)
Q Consensus 512 hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc-ff~Dp~~g~~va~VQ~P 572 (1040)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..++ +...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 34599999999986 37999999999998 58899988744 44555 66777776
No 67
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.64 E-value=1.1e-06 Score=98.06 Aligned_cols=122 Identities=21% Similarity=0.287 Sum_probs=89.2
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcc
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPE 408 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe 408 (1040)
-|.|.++|.||| +...+.+++.++.+++||.+ .++++|+|+++.|.+.+.+.
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~---------------------- 53 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKAR---------------------- 53 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhh----------------------
Confidence 477999999998 35789999999999999965 34489999987544422210
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCC
Q 039060 409 MYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGG 488 (1040)
Q Consensus 409 ~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 488 (1040)
T Consensus 54 -------------------------------------------------------------------------------- 53 (305)
T COG1216 54 -------------------------------------------------------------------------------- 53 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCC-EEEEecCCCCCCchHHHHHHHHhhc-CCCCCCce
Q 039060 489 HDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAP-FMLNLDCDHYVNNSKAVRESMCFLM-DPQTGRKV 566 (1040)
Q Consensus 489 ~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp-~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~v 566 (1040)
..|.+.|+.-.+.-|| ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+. +| .+
T Consensus 54 ------~~~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~ 115 (305)
T COG1216 54 ------FFPNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AA 115 (305)
T ss_pred ------cCCcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CC
Confidence 0234666666666665 89999888763 34544 9999999977 69999999998774 55 67
Q ss_pred EEEecCcccc
Q 039060 567 CYVQFPQRFD 576 (1040)
Q Consensus 567 a~VQ~PQ~F~ 576 (1040)
+.|+.-.+.+
T Consensus 116 ~~~~~~i~~~ 125 (305)
T COG1216 116 GVVGPLIRNY 125 (305)
T ss_pred eEeeeeEecC
Confidence 7777655543
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.61 E-value=1.3e-06 Score=96.45 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=44.8
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEEecCccccCCCc
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYVQFPQRFDGIDR 580 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~VQ~PQ~F~nid~ 580 (1040)
.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+...=.. ...+++-.|..|.+.+.
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~~-~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLDK-NPNAFLVYPCLYLSEEG 135 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHhc-CCCceEEEeeeeccchh
Confidence 699999999986 69999999999999 589999999994221000 13356666777765443
No 69
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.50 E-value=6.6e-07 Score=100.52 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=42.4
Q ss_pred CCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCCceEEEec
Q 039060 513 HKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGRKVCYVQF 571 (1040)
Q Consensus 513 h~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~~va~VQ~ 571 (1040)
..|++|+|.++.. ++|++|+.+|||....+|++|.+.+..+. || ++++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 4599999999985 68999999999996358999999998775 77 5667764
No 70
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.43 E-value=5.2e-06 Score=102.59 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccc
Q 039060 735 SITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGS 785 (1040)
Q Consensus 735 svTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~ 785 (1040)
+..||=.+..++..+||+.-|+.... ....+|+++.+++.||+||..|.
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~--a~t~~Pe~~~efl~QrrRW~~s~ 597 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASD--AETEAPESFLEFLNQRRRWLNSI 597 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecccc--ccccCcHhHHHHHHHhhhhcccc
Confidence 48999999999999999999997654 38999999999999999999993
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.24 E-value=1.2e-05 Score=91.03 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=35.7
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM 558 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 558 (1040)
.|++|+|++++. ++|++++.+|||.. .+|+.+.+.+..+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 599999999986 58999999999999 68999999988774
No 72
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.00013 Score=69.93 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHH
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
.|.+.|+||||| |+ ..+.++|.|++.+.|+. .+|+|+|||+++-|-+
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~ 48 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTE 48 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHH
Confidence 578999999999 65 89999999999999995 6799999999985443
No 73
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.80 E-value=0.00028 Score=80.12 Aligned_cols=158 Identities=26% Similarity=0.448 Sum_probs=108.3
Q ss_pred CCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE-ecCccccCCCchhhhhhhhhh
Q 039060 512 HHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV-QFPQRFDGIDRHDRYANRNTV 590 (1040)
Q Consensus 512 hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V-Q~PQ~F~nid~~D~y~n~~~v 590 (1040)
-+-|-.||=-+.|. ...|+|++.|.|-.+ .|+.+....-=|+.|+ ++|+| |+|-.++-..
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~m-~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIFM-KPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCeee-cCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 34577777777775 688999999999995 9999999888888764 89998 6665553211
Q ss_pred hhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCCCCCCCcccccccccccCCccccCCCCChhhHH
Q 039060 591 FFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKKYSKHSANGENANLGGMDDDKEL 670 (1040)
Q Consensus 591 Ffdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1040)
|+.-. .-+|-||. +-|-.|-|- ..... |.
T Consensus 216 -f~atl-------e~~~fgTs--h~r~yl~~n----------~~~~~---c~---------------------------- 244 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGTS--HPRIYLSGN----------VLGFN---CS---------------------------- 244 (431)
T ss_pred -chhhh-------hheeeccC--CceEEEccc----------ccccc---cc----------------------------
Confidence 11100 01344443 223222110 00011 11
Q ss_pred HhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCC
Q 039060 671 LMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRG 750 (1040)
Q Consensus 671 ~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~G 750 (1040)
-|-|...|++++.|.||+... | +.+.||...+=.+..+|
T Consensus 245 ----------tgms~~mrK~~ld~~ggi~~f----------------------------~---~yLaedyFaaksllSRG 283 (431)
T KOG2547|consen 245 ----------TGMSSMMRKEALDECGGISAF----------------------------G---GYLAEDYFAAKSLLSRG 283 (431)
T ss_pred ----------ccHHHHHHHHHHHHhccHHHH----------------------------H---HHHHHHHHHHHHHHhhh
Confidence 255788999999999997652 1 47999999999999999
Q ss_pred cEEEEeCCCcccccccCCCCHHHHHHHHHHhh
Q 039060 751 WRSIYCMPKRAAFKGSAPINLSDRLNQVLRWA 782 (1040)
Q Consensus 751 WrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA 782 (1040)
|++.+..... -.-.+-.+...+..|-.||.
T Consensus 284 ~ksaist~pa--lQnSas~~mssf~~Ri~rwv 313 (431)
T KOG2547|consen 284 WKSAISTHPA--LQNSASVTMSSFLDRIIRWV 313 (431)
T ss_pred hhhhhcccch--hhhhhhhHHHHHHHHHHHhh
Confidence 9999987532 25666688999999999997
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=97.79 E-value=0.00017 Score=76.83 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
.++.+.|.++.. ..+++|+.+|+|.. ..++.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 478999999985 57899999999999 5899999998888654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.85 E-value=0.00045 Score=77.01 Aligned_cols=48 Identities=31% Similarity=0.977 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
.|..|=+.+-.+ ..-|.+| -|||.|||.||.--|.+=|+.||.|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 599999997765 3459999 99999999999999999999999999999
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=96.14 E-value=0.0028 Score=54.10 Aligned_cols=46 Identities=39% Similarity=0.923 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCC--Chhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQ--CKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~Cpq--Ckt~Y 86 (1040)
.+..|.+||+.+ .+|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 356899999998 458889999999999999999886 56765 77765
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=96.13 E-value=0.06 Score=61.92 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=35.8
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCCh
Q 039060 332 VDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASI 377 (1040)
Q Consensus 332 VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~ 377 (1040)
+-|+|.+|| - |..+++||.|++.+.+-.+...+||++||+..
T Consensus 2 ~PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 2 IPVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred cCEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 358899998 5 59999999999998755568899999999875
No 78
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.47 E-value=0.013 Score=66.07 Aligned_cols=59 Identities=25% Similarity=0.513 Sum_probs=51.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCC
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSP 93 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p 93 (1040)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+--.+.|.+.||+|++..+..+=.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence 45799999999999988888888 999999999998888889999999999998764333
No 79
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=95.32 E-value=0.082 Score=55.95 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=38.4
Q ss_pred cEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 498 RLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 498 ~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
++.-..|.+.-|- .-|--+++.+ ..|+|+++.|||-- ..|+++-+.+....+-
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhcc
Confidence 4777788875442 2234455554 68999999999997 7999999887766553
No 80
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=94.31 E-value=0.42 Score=60.28 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=117.4
Q ss_pred cccCCCCC--CCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHH------HhhcCCC--------------
Q 039060 504 REKRPGFQ--HHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESM------CFLMDPQ-------------- 561 (1040)
Q Consensus 504 RekRpg~~--hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am------cff~Dp~-------------- 561 (1040)
|-|-||-+ -..|.-|=|+++ +.+.|++|-.+|+.+= +.|.|++ .=|....
T Consensus 263 ri~LpG~pilGeGK~eNQNhai----iF~rGe~lQ~IDmNQD----nYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~ 334 (817)
T PF02364_consen 263 RIKLPGNPILGEGKPENQNHAI----IFTRGEYLQTIDMNQD----NYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEE 334 (817)
T ss_pred EEECCCCCcCCCCCccccceeE----EEEccccccccccchh----hhHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 44555533 367999999887 3689999999998442 3444443 3222111
Q ss_pred CCCceEEEecCccccCCCch---hhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCCC
Q 039060 562 TGRKVCYVQFPQRFDGIDRH---DRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDC 638 (1040)
Q Consensus 562 ~g~~va~VQ~PQ~F~nid~~---D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~~ 638 (1040)
....++.|-++.+-+...-+ |-.+++...|--+-+|-+.-..
T Consensus 335 ~~~~~aIlG~RE~IFs~~vg~L~~~aa~qE~~F~Tl~qR~la~p~----------------------------------- 379 (817)
T PF02364_consen 335 GKRPVAILGFREHIFSENVGSLGDFAAGQEQSFGTLFQRTLANPL----------------------------------- 379 (817)
T ss_pred CCCCceEecccceEecCCcchHHHHhhhhhHHHHHHHHHHHhcch-----------------------------------
Confidence 13466777666655433322 4455566666555554443221
Q ss_pred CCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhcccc
Q 039060 639 CPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCG 718 (1040)
Q Consensus 639 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~ 718 (1040)
.+-+||.-.+|-+--...-||++.. ...
T Consensus 380 --------------------------------------~rlHYGHPD~~n~~f~~TRGGvSKA----------sk~---- 407 (817)
T PF02364_consen 380 --------------------------------------VRLHYGHPDVFNRIFMTTRGGVSKA----------SKG---- 407 (817)
T ss_pred --------------------------------------hhccCCCchhhhhhheeccCccchH----------hhc----
Confidence 1235666666665555677887652 111
Q ss_pred ccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCC-CCHHHHHHHHHHhhccchhHHhhcCCccc
Q 039060 719 YEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAP-INLSDRLNQVLRWALGSVEIFFSRHSPVW 797 (1040)
Q Consensus 719 YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP-~tl~~~l~QR~RWA~G~lQil~sk~~PL~ 797 (1040)
-.++||+..|+....||-++.++.- .. .|..- ..+..-+.=...-+.|+=|..++|. .
T Consensus 408 ---------------lhLsEDIfaG~n~~lRGG~i~h~ey-~q--cGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe---~ 466 (817)
T PF02364_consen 408 ---------------LHLSEDIFAGMNATLRGGRIKHCEY-IQ--CGKGRDVGFNSILNFETKIASGMGEQMLSRE---Y 466 (817)
T ss_pred ---------------ccccHHHHHHHHHHhcCCceeehhh-hh--cccccccCchhhhhhHhHhcCCccchhhhHH---H
Confidence 2699999999999999999999853 22 34332 2333333334667889988887763 1
Q ss_pred ccccCCCCCccchhhhhhh
Q 039060 798 YGYKGGNLRFLERFAYVNT 816 (1040)
Q Consensus 798 ~g~~~~~L~l~QRL~Yl~~ 816 (1040)
|. .+.+|.+.+-+++..+
T Consensus 467 yr-Lg~~ld~~R~LSfyy~ 484 (817)
T PF02364_consen 467 YR-LGTRLDFFRFLSFYYA 484 (817)
T ss_pred HH-hhccCCHHHHHHHHhc
Confidence 11 1456887777765443
No 81
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=93.42 E-value=0.52 Score=52.90 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=39.1
Q ss_pred CeEEEEecCCCCCCChHHHHHHHHHHHcCCCCC---CCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhc
Q 039060 331 PVDIFVSTVDPLKEPPLVTANTVLSILAMDYPV---DKISCYISDDGASIITFDALAETAEFARKWVPFCKKFA 401 (1040)
Q Consensus 331 ~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~---~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~ 401 (1040)
...|+||+||=.+-=|.+...|+..+- -.|-. =..++.|+|||+.+-|.+... -||+|++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le-~ry~~~~~F~~eiiVvddgs~d~T~~~a~----------k~s~K~~ 130 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLE-KRYLSDKSFTYEIIVVDDGSTDSTVEVAL----------KFSRKLG 130 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHH-HHhccCCCCceeEEEeCCCCchhHHHHHH----------HHHHHcC
Confidence 689999999922222455666665543 23333 367899999999986655322 3677765
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.23 E-value=0.2 Score=50.23 Aligned_cols=52 Identities=35% Similarity=0.836 Sum_probs=39.2
Q ss_pred cccccccccccccCCCCeeecCCC-CCCCcccchhHHHHh--hCCCCCCCChhhhhccc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNE-CGFPVCRPCYEYERR--EGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~e-C~FpvCRpCyeyerk--eG~~~CpqCkt~Ykr~k 90 (1040)
--|.||.|. -.-|-|.-=|| |||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 369999875 22344666556 499999999976666 45589999999999764
No 83
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=88.50 E-value=0.36 Score=37.52 Aligned_cols=44 Identities=32% Similarity=0.784 Sum_probs=33.1
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~ 85 (1040)
.|.||.++. .+.+ ....|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 2222 2234899999999987777778899999875
No 84
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.97 E-value=1.1 Score=38.31 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=34.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999864 22 333 378999999999887776 67899999877
No 85
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.73 E-value=4.5 Score=47.33 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCC
Q 039060 325 EPNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGA 375 (1040)
Q Consensus 325 ~~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~ 375 (1040)
.+++||++.|+|.-.| |.-..+++||-|++.-.=|.=--+|.++||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4688999999999998 99999999999998755333244688888844
No 86
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.55 E-value=2.5 Score=52.01 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCCh
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASI 377 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~ 377 (1040)
.+.||++.|+|+-+| |...++.+||-|+...-=|.---+|+|+||.+..
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655556789999998764
No 87
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.44 E-value=2.4 Score=46.43 Aligned_cols=46 Identities=37% Similarity=0.817 Sum_probs=38.2
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHH---HhhCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE---RREGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye---rkeG~~~CpqCkt~Yk 87 (1040)
---|.||=|.+ =|+.|-| ||---|.||. |- ....+++||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34899998876 5678888 9999999998 65 6788999999998753
No 88
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=75.28 E-value=1.3 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=17.4
Q ss_pred ccchhHHHHhhCCCCCCCChhhhhc
Q 039060 64 CRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 64 CRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
|.-|- .+...|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44444 4467888999999998643
No 89
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=74.73 E-value=2.6 Score=45.22 Aligned_cols=62 Identities=27% Similarity=0.575 Sum_probs=40.7
Q ss_pred EecCCCCCC-CCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHh---------------hCCCCCCCCh
Q 039060 20 IHNHEEPKP-LKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR---------------EGTQVCPQCK 83 (1040)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk---------------eG~~~CpqCk 83 (1040)
|+.|++... +...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-.. .+...||-|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR 75 (193)
T PLN03208 3 IEKDEDDTTLVDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCK 75 (193)
T ss_pred cccccccceeccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCC
Confidence 555665433 33445569999999751 3334 26899999999963211 1346899999
Q ss_pred hhhhc
Q 039060 84 TRYKR 88 (1040)
Q Consensus 84 t~Ykr 88 (1040)
+....
T Consensus 76 ~~Is~ 80 (193)
T PLN03208 76 SDVSE 80 (193)
T ss_pred CcCCh
Confidence 98843
No 90
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=73.14 E-value=2.2 Score=34.47 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=33.5
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCCh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCK 83 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCk 83 (1040)
.|.||-+++.. ++..+... |+=-.|+.|.+--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999754 67777774 9999999999655544 57999996
No 91
>PHA02929 N1R/p28-like protein; Provisional
Probab=72.81 E-value=3.5 Score=45.64 Aligned_cols=56 Identities=20% Similarity=0.496 Sum_probs=39.5
Q ss_pred CCCcccccccccccccCC-CCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTVD-GDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~-G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.....|.||.+.+..++- ...+..=..|+=.-|+.|.. +-.+.++.||-|++++.-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEeeE
Confidence 456799999998754331 11233334788899999995 445578899999998753
No 92
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=71.95 E-value=2.2 Score=35.26 Aligned_cols=26 Identities=35% Similarity=0.910 Sum_probs=21.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCCc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
+|.-||.++.++.. .-+-|.+||+.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 79999999888733 348899999876
No 93
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.97 E-value=3 Score=32.38 Aligned_cols=26 Identities=42% Similarity=1.044 Sum_probs=18.9
Q ss_pred ccccccccccccCCCCeeecCCCCCCCc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
+|.-||.++.+.. ++ -+-|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998664 33 37999999875
No 94
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.34 E-value=1.9 Score=37.41 Aligned_cols=47 Identities=32% Similarity=0.699 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
..|.|-.||..-.. ..+.+ ||=-||+-|+.-||-+| ||=|.+|+...
T Consensus 6 ~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 34567777765221 12444 59999999999999888 99999999654
No 95
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.51 E-value=3.7 Score=46.33 Aligned_cols=53 Identities=30% Similarity=0.651 Sum_probs=43.8
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
+-|.+|--++-++.+ ++.-=|||+.+.|-.|..---.-|...||.|.+.-+..
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358889888888765 55555699999999999777778999999999998765
No 96
>PHA02862 5L protein; Provisional
Probab=67.89 E-value=3.1 Score=42.63 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=31.8
Q ss_pred CcccccccccccccCCCCeeecCCCC---CCCcccchhHHH-HhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNEC---GFPVCRPCYEYE-RREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC---~FpvCRpCyeye-rkeG~~~CpqCkt~Ykr 88 (1040)
+.+|-||-++- +|..-|| .| -==|=+.|.+-= ...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 46899998862 3446788 44 111234554322 44788999999999964
No 97
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=65.20 E-value=4.3 Score=46.58 Aligned_cols=52 Identities=31% Similarity=0.867 Sum_probs=43.1
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
...|.+|++.. +.+--.|+|| -|+|-+|-+|-.- .-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~t-~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHKT-ISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhhc-ccccCCCCCccCCccccC
Confidence 36899999985 4445579999 9999999999944 478999999999999764
No 98
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=63.26 E-value=4.2 Score=46.17 Aligned_cols=46 Identities=30% Similarity=0.834 Sum_probs=37.6
Q ss_pred cCCCCeeecCCCCCCCc--------cc--chhHHHHhhCCCCCCCChhhhhcccCC
Q 039060 47 TVDGDLFVACNECGFPV--------CR--PCYEYERREGTQVCPQCKTRYKRLKGS 92 (1040)
Q Consensus 47 ~~~G~~fvaC~eC~Fpv--------CR--pCyeyerkeG~~~CpqCkt~Ykr~kg~ 92 (1040)
..+|...--|..|+||| |+ .|||-+|.|-.+.||.|-.|-.|.+-+
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQI 139 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHHh
Confidence 34566667799999998 54 699999999999999999999887433
No 99
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=62.37 E-value=30 Score=31.87 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHH
Q 039060 344 EPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 344 Ep~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
|. ..+...|..-+++.+- ++||.|||+++-|.+
T Consensus 3 e~-~~L~~wl~~~~~lG~d----~i~i~d~~s~D~t~~ 35 (97)
T PF13704_consen 3 EA-DYLPEWLAHHLALGVD----HIYIYDDGSTDGTRE 35 (97)
T ss_pred hH-HHHHHHHHHHHHcCCC----EEEEEECCCCccHHH
Confidence 54 5677778887777664 589999999985543
No 100
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=62.33 E-value=6.8 Score=29.04 Aligned_cols=39 Identities=38% Similarity=0.934 Sum_probs=27.5
Q ss_pred cccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCC
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQC 82 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqC 82 (1040)
|.||.+.. ....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12211 25788899999986666677889987
No 101
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=62.09 E-value=5.3 Score=41.63 Aligned_cols=51 Identities=25% Similarity=0.477 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCC---CcccchhHHH-HhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGF---PVCRPCYEYE-RREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~F---pvCRpCyeye-rkeG~~~CpqCkt~Ykr~ 89 (1040)
.+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...++..|++|+++|+-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997662 3345688 5532 2346777644 345789999999999654
No 102
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=61.64 E-value=1.1e+02 Score=41.57 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=47.7
Q ss_pred cccchHHHHHHHHhCCcEEEEeCCCcccc----cccCCCCHHHHHHHHHHhhccchhHHhhcCCcccccccCCCCCccch
Q 039060 735 SITEDILTGFKMHCRGWRSIYCMPKRAAF----KGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVWYGYKGGNLRFLER 810 (1040)
Q Consensus 735 svTED~~tg~rLh~~GWrsvY~~~~~~af----~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~~g~~~~~L~l~QR 810 (1040)
.+.||+..|+....||=++.+|.- ..+= .|....+. =-..-+.|+=|-.+++. .|.. +.++.+-+-
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~EY-iQvGKGRDvGlnqI~~-----FeaKia~G~GEQ~LSRd---~YrL-G~~ldffRm 1242 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHHEY-IQVGKGRDVGLNQISN-----FEAKIANGNGEQTLSRD---YYRL-GTQLDFFRM 1242 (1679)
T ss_pred ccchHhhhhhhHHhhCCCccccee-eecccccccCcchhhh-----hhhhhcCCCcchhhhHH---HHHh-cccccHHHH
Confidence 599999999999999988888742 1110 12322221 12345888887777763 2222 445777666
Q ss_pred hhhhh-hhhhhhhHHH
Q 039060 811 FAYVN-TTIYPFTSIP 825 (1040)
Q Consensus 811 L~Yl~-~~ly~l~slp 825 (1040)
|++.. +.-+++.++.
T Consensus 1243 LSfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1243 LSFYFTTVGFYFNNMF 1258 (1679)
T ss_pred HHHHhccccHHHHhHH
Confidence 66433 3334555443
No 103
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=61.58 E-value=1.4 Score=39.32 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=21.4
Q ss_pred cchhHHHHhhCCCCCCCChhhhhcc
Q 039060 65 RPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 65 RpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 5677888999999999999999644
No 104
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.62 E-value=12 Score=44.02 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=42.7
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhh
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIIT 379 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt 379 (1040)
.+||.-.|+|+-.| |--..+-+||.|+|.-.=+.=-.+|+++||++.+.+
T Consensus 121 ~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe 170 (559)
T KOG3738|consen 121 VDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE 170 (559)
T ss_pred cCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH
Confidence 57999999999998 999999999999999764433568999999999754
No 105
>PRK00420 hypothetical protein; Validated
Probab=59.52 E-value=3.7 Score=40.55 Aligned_cols=29 Identities=34% Similarity=0.771 Sum_probs=22.9
Q ss_pred ecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 54 VACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 54 vaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-.|..|++|.= +.++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888863 338999999999998854
No 106
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=57.45 E-value=8.3 Score=30.39 Aligned_cols=39 Identities=38% Similarity=0.906 Sum_probs=27.9
Q ss_pred cccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCC
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQC 82 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqC 82 (1040)
|.||-+... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 778877642 244444 78999999999877666 7999987
No 107
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=7.2 Score=44.41 Aligned_cols=40 Identities=33% Similarity=0.782 Sum_probs=30.6
Q ss_pred CCCCCCccccc--ccccccccCCCCeeecCCC-CCCCcccchhH
Q 039060 29 LKNLDAQVCEI--CGDEIGLTVDGDLFVACNE-CGFPVCRPCYE 69 (1040)
Q Consensus 29 ~~~~~~~~c~i--Cg~~vg~~~~G~~fvaC~e-C~FpvCRpCye 69 (1040)
+.+..|-.|.- ||...-...| +--|.|.. |+|--||.|.|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 45667889986 9987655442 33588977 99999999998
No 108
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=55.19 E-value=4 Score=46.33 Aligned_cols=36 Identities=31% Similarity=0.863 Sum_probs=27.2
Q ss_pred ccccccccccccCCCCeeecCCCC-CCCcccchhHHHHhhC
Q 039060 36 VCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYEYERREG 75 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC-~FpvCRpCyeyerkeG 75 (1040)
-|.+|--++ ..-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887664 23479999999 9999999995443333
No 109
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=54.69 E-value=24 Score=38.32 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=36.3
Q ss_pred CCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCC
Q 039060 513 HKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQ 561 (1040)
Q Consensus 513 h~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~ 561 (1040)
..-|-+.|++++. ++++|++.+.=|..+.+++++.+++-.| .||+
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 3368889999986 6999999999999999999999999999 8994
No 110
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.58 E-value=7.5 Score=30.59 Aligned_cols=40 Identities=33% Similarity=0.750 Sum_probs=30.1
Q ss_pred cccccccccccCCCCeeecCCCCCCCcccchhHHHHh-hCCCCCCCC
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-EGTQVCPQC 82 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk-eG~~~CpqC 82 (1040)
|.||.+...... -=.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778888753322 2347799999999987766 788899988
No 111
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=54.51 E-value=6.8 Score=33.43 Aligned_cols=28 Identities=36% Similarity=1.008 Sum_probs=17.8
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhH
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE 69 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCye 69 (1040)
.|.|||+++|+... .-+ +=+| ||..|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999998643 111 1123 6777773
No 112
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=53.53 E-value=2.1 Score=42.22 Aligned_cols=47 Identities=30% Similarity=0.839 Sum_probs=34.4
Q ss_pred CCcccccccccccccC-CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCC
Q 039060 33 DAQVCEICGDEIGLTV-DGDLFVACNECGFPVCRPCYEYERREGTQVCPQC 82 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~-~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqC 82 (1040)
+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 5669999999977663 35 88999999999999988444554556555
No 113
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=52.03 E-value=11 Score=30.77 Aligned_cols=38 Identities=26% Similarity=0.823 Sum_probs=28.6
Q ss_pred CCcccccccccccccCCCCeeecCCCC-CCCcccchhHHHHhhC
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYEYERREG 75 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC-~FpvCRpCyeyerkeG 75 (1040)
....|..|+..+ .|.-+ .|.+| .|-+|..||..-+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 345799999854 36656 79999 9999999997554443
No 114
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=51.37 E-value=11 Score=45.13 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=22.9
Q ss_pred CeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhccc
Q 039060 51 DLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 51 ~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~k 90 (1040)
+.-++|++|+.-+ ..+...||+|++.-.|.+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~~ 249 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVRR 249 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCCC
Confidence 3467899999864 234568999999986653
No 115
>PRK12495 hypothetical protein; Provisional
Probab=51.00 E-value=7.5 Score=42.43 Aligned_cols=29 Identities=34% Similarity=0.965 Sum_probs=21.7
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 42 a~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 42 NAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 345666666664 45899999999999864
No 116
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=49.37 E-value=10 Score=31.24 Aligned_cols=27 Identities=37% Similarity=0.838 Sum_probs=17.4
Q ss_pred ccccccccccccCCCCeeecCCCCCCCc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
.|+-||..+..+++.. -+-|..||.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 6778888777765544 35566666554
No 118
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=47.76 E-value=11 Score=44.87 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=21.8
Q ss_pred eeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 52 LFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 52 ~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
..++|++|+..+ . ......||+|++.-.|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 23446899999987554
No 119
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=47.73 E-value=6.1 Score=38.87 Aligned_cols=29 Identities=24% Similarity=0.513 Sum_probs=19.3
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-+-|+.|+ ++++..+-.-.||+|+.+=..
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGERLR 98 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCCcE
Confidence 35577777 556666566679999976433
No 120
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=47.72 E-value=12 Score=30.97 Aligned_cols=46 Identities=24% Similarity=0.622 Sum_probs=32.4
Q ss_pred cccccccccccccCCCCeeecCCCCCCC-cccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
..|.||.++.-- -.+.+ |+=- +|..|++--.+ .+..||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLP---CGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEET---TCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEeC---CCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 23454 5777 99999976666 77999999998753
No 121
>PHA02926 zinc finger-like protein; Provisional
Probab=47.17 E-value=17 Score=39.87 Aligned_cols=62 Identities=23% Similarity=0.532 Sum_probs=42.3
Q ss_pred CCCCccccccccccccc--CCCCeeecCCCCCCCcccchhHHHHhh-----CCCCCCCChhhhhcccCC
Q 039060 31 NLDAQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERRE-----GTQVCPQCKTRYKRLKGS 92 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~--~~G~~fvaC~eC~FpvCRpCyeyerke-----G~~~CpqCkt~Ykr~kg~ 92 (1040)
.+....|.||=+.|-.. ++..-|--=..|+=.-|..|..--++. +...||.|+++++...=|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 34557999999987543 122223333357888999999776653 246799999999876544
No 122
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=44.90 E-value=7.9 Score=45.21 Aligned_cols=71 Identities=28% Similarity=0.525 Sum_probs=45.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh---hc--ccCCCCCCCCCCccccc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY---KR--LKGSPRVEGDEDEEDID 105 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y---kr--~kg~p~v~gd~~e~~~~ 105 (1040)
-+--|..||+-+|+...----.+|..=--- |==|||--++|.+.||-|+.-- || .-|||-|+.+-++-++-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~--rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~vT 439 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHL--RCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCVT 439 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHH--HHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccccccccc
Confidence 355899999999998654445566210000 1126777899999999998332 22 23788888776555543
No 123
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.55 E-value=14 Score=48.01 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=32.4
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCC-----CcccchhHHHHhhC-CCCCCCChhhhh
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGF-----PVCRPCYEYERREG-TQVCPQCKTRYK 87 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~F-----pvCRpCyeyerkeG-~~~CpqCkt~Yk 87 (1040)
.....|.-||... ....|.+||= -.|..| ++.+ .-.||.|++.=.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556899999883 4568999984 368888 3433 367999997654
No 124
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=44.28 E-value=8.8 Score=45.50 Aligned_cols=57 Identities=25% Similarity=0.642 Sum_probs=39.2
Q ss_pred cccccccccccccCCCCeeecCCCCC-CCcccchhHHHHhhCCCCCCCChhhhhcccC--CCCCCCC
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECG-FPVCRPCYEYERREGTQVCPQCKTRYKRLKG--SPRVEGD 98 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~-FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg--~p~v~gd 98 (1040)
..|-.|..+| +|-.+|-|.||. |-+|-+|+---..-|.. ||.-+|+-.+. .|.+.+|
T Consensus 15 y~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~~s~~i~~~~ 74 (438)
T KOG0457|consen 15 YNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDTNSFPILDPS 74 (438)
T ss_pred CCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecCCCCCCCCCC
Confidence 4899999886 477899999998 99999999433333322 44566665543 4555555
No 125
>PRK07220 DNA topoisomerase I; Validated
Probab=43.56 E-value=12 Score=47.90 Aligned_cols=48 Identities=23% Similarity=0.658 Sum_probs=32.4
Q ss_pred ccccccccccccc--CCCCeeecCCCCCCCcccchhHHHHh----hCCCCCCCChh
Q 039060 35 QVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERR----EGTQVCPQCKT 84 (1040)
Q Consensus 35 ~~c~iCg~~vg~~--~~G~~fvaC~eC~FpvCRpCyeyerk----eG~~~CpqCkt 84 (1040)
..|..||.++... ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875432 3466799995 67888755543321 12478999985
No 126
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=43.46 E-value=16 Score=32.21 Aligned_cols=33 Identities=30% Similarity=0.716 Sum_probs=24.1
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRP 66 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRp 66 (1040)
.+|.|..||.....+.++.. .-|..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~-~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRV-FTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccce-EEcCCCCCEECcH
Confidence 68899999999877555554 4587888876554
No 127
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=43.04 E-value=7.9 Score=40.96 Aligned_cols=26 Identities=27% Similarity=0.729 Sum_probs=20.2
Q ss_pred cccccccccccCCCCeeecCCCCCCCc-ccc
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPV-CRP 66 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~Fpv-CRp 66 (1040)
|+-|... .+.+.-..|+.|=||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 9999876 2344578999999999 754
No 128
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.46 E-value=8.6 Score=38.04 Aligned_cols=30 Identities=17% Similarity=0.562 Sum_probs=17.5
Q ss_pred eecCCCCCCCcccchhHHHHhhCC-CCCCCChhhhhcc
Q 039060 53 FVACNECGFPVCRPCYEYERREGT-QVCPQCKTRYKRL 89 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~-~~CpqCkt~Ykr~ 89 (1040)
..-|+.|+ ++++..+-. ..||+|+.+-.+.
T Consensus 71 ~~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 71 ELECKDCS-------HVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEEhhhCC-------CccccCCccCCcCcCCCCCceEE
Confidence 34476666 334444322 3599999875544
No 129
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=40.90 E-value=18 Score=36.54 Aligned_cols=50 Identities=28% Similarity=0.693 Sum_probs=36.3
Q ss_pred CCCCcccccccccccc--cCCCCeeecCCCCCCCcccchhHH---HHhhCCCCCCCChh
Q 039060 31 NLDAQVCEICGDEIGL--TVDGDLFVACNECGFPVCRPCYEY---ERREGTQVCPQCKT 84 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~--~~~G~~fvaC~eC~FpvCRpCyey---erkeG~~~CpqCkt 84 (1040)
....+.|..||....+ ...| -|+.|. .||.|+- |+. ...+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3457899999999544 3468 999994 6999996 221 22356689999997
No 130
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=40.83 E-value=17 Score=32.15 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=24.1
Q ss_pred CCccccccccc---ccccCCCCeeecCCCCCCC
Q 039060 33 DAQVCEICGDE---IGLTVDGDLFVACNECGFP 62 (1040)
Q Consensus 33 ~~~~c~iCg~~---vg~~~~G~~fvaC~eC~Fp 62 (1040)
.|-+|.-|+.- +...+||...+-|-+|+|.
T Consensus 8 AGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 8 AGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred ccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 46689999854 5556889999999999985
No 131
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.82 E-value=13 Score=31.65 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=20.2
Q ss_pred cccccccccccccCCCCeeecCCCCCCCc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
-.|..||.+|.++.. ..-+.|..|++.|
T Consensus 7 Y~C~~Cg~~~~~~~~-~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQE-TRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhhc-cCceeCCCCCcEE
Confidence 479999999954432 2358898898865
No 132
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=40.65 E-value=1e+02 Score=36.23 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCCchhhhHH--HHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH
Q 039060 512 HHKKAGAMNA--LVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC 555 (1040)
Q Consensus 512 hh~KAGALNa--llrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1040)
.+.|+-.|=- +|.. ..+.+||-.+|||.|+ |.++.|-+-
T Consensus 141 R~GKgEGMiiG~lLAk---~~g~~YVGFiDaDNyi--PGaV~EYvk 181 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK---AIGAEYVGFVDADNYF--PGAVNEYVK 181 (381)
T ss_pred ecCcchHHHHHHHHHH---HhCCceEeEeecccCC--CchHHHHHH
Confidence 4569888854 3433 3588999999999998 567777443
No 133
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.59 E-value=4.6e+02 Score=29.93 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEE-EEecCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISC-YISDDG 374 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~v-yv~DDG 374 (1040)
..+-++|=|+.|--| +++ ....=...+..++||.+++++ +++.|.
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~ 66 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDS 66 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCC
Confidence 356788988888877 454 577778889999999999888 444443
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=40.52 E-value=10 Score=43.73 Aligned_cols=31 Identities=32% Similarity=0.914 Sum_probs=25.7
Q ss_pred CCCcccchhHHHHhhCC--CCCCCChhhhhccc
Q 039060 60 GFPVCRPCYEYERREGT--QVCPQCKTRYKRLK 90 (1040)
Q Consensus 60 ~FpvCRpCyeyerkeG~--~~CpqCkt~Ykr~k 90 (1040)
+|.|||.|+---+-+-+ +-||-|.++|+..|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 58899999977766666 99999999997543
No 135
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=40.43 E-value=4.5 Score=39.68 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=16.4
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
-+-|+.|+.. |+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~~-------~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGHE-------FEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS-E-------EECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCCE-------EecCCCCCCCcCCcCCCcEE
Confidence 3457777643 33344445599999987554
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.32 E-value=25 Score=30.83 Aligned_cols=47 Identities=30% Similarity=0.734 Sum_probs=34.3
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-|+.|+.++--+. .+-++-=.||-| |.+|-|-.. ++.||-|+..+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999975443 344555578887 999997654 4789999976643
No 137
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=39.93 E-value=19 Score=29.74 Aligned_cols=31 Identities=32% Similarity=0.792 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCeeecCCCCC-CCcccchhHHH
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECG-FPVCRPCYEYE 71 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~-FpvCRpCyeye 71 (1040)
.|.+|+..| .| ....|.+|. |-+|.+||...
T Consensus 2 ~C~~C~~~i----~g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI----VG-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC----cC-CEEECCCCCCCcCHHHHHCcC
Confidence 588999854 25 689999996 99999999633
No 138
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=39.83 E-value=4.9e+02 Score=30.63 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=14.5
Q ss_pred hhhcCccchhhhcccchhh
Q 039060 870 LRWSGVSIEEWWRNEQFWV 888 (1040)
Q Consensus 870 ~rwsG~si~~wWrne~~W~ 888 (1040)
.+-.|-+++.||....|+.
T Consensus 172 L~~NGS~Ik~WW~~HHy~s 190 (330)
T PF07851_consen 172 LIVNGSRIKGWWVFHHYIS 190 (330)
T ss_pred hccCCCcchHHHHHHHHHH
Confidence 3455777999999888874
No 139
>COG4818 Predicted membrane protein [Function unknown]
Probab=39.52 E-value=1.9e+02 Score=28.14 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 039060 889 IGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVAGISDAINNGYQSW 968 (1040)
Q Consensus 889 I~~~sa~lfav~~allkvL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~Gi~~~i~~g~~~w 968 (1040)
|.+...++++.+.+++-.|.-++.+|..=- ..+. .+|.+.++++.++..+.-.| |+- .
T Consensus 5 iegaLCY~lgwitGllFlllEre~~FVrFH-------------AmQS------~ltF~~l~~l~ill~~iP~I--g~l-l 62 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKFVRFH-------------AMQS------FLTFLGLWLLIILLAFIPYI--GWL-L 62 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcceeeh-------------hHHH------HHHHHHHHHHHHHHHHhhhh--HHH-H
Confidence 345567778888888887776666662110 0111 22233333333333222111 110 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCCcchh
Q 039060 969 GPLFGKLFFAFWVILHLYPFLKGLMGRQNRTPTI 1002 (1040)
Q Consensus 969 ~~l~g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~ 1002 (1040)
..+.+...+..| +.+.+|+.-|-+.|.|.+
T Consensus 63 s~~v~l~a~iLw----lv~mykAyrGe~fKlPv~ 92 (105)
T COG4818 63 SGLVGLAAFILW----LVCMYKAYRGERFKLPVV 92 (105)
T ss_pred HhHHHHHHHHHH----HHHHHHHHcCCeecCcee
Confidence 123333444444 478899998888898864
No 140
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=39.39 E-value=12 Score=32.90 Aligned_cols=13 Identities=54% Similarity=1.255 Sum_probs=8.4
Q ss_pred CCCCCChhhhhcc
Q 039060 77 QVCPQCKTRYKRL 89 (1040)
Q Consensus 77 ~~CpqCkt~Ykr~ 89 (1040)
-+||+||+-|..+
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4567777777543
No 141
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=39.22 E-value=1.1e+02 Score=36.10 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCCchhhhHH--HHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH
Q 039060 512 HHKKAGAMNA--LVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC 555 (1040)
Q Consensus 512 hh~KAGALNa--llrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1040)
.+.|+-.|=- +|.. ..+.+||-.+|||.|+ |.++.|-+-
T Consensus 142 R~GKgEGMiiG~lLAk---~~g~~YVGFiDADNyi--PGaV~EYvk 182 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK---ALGARYVGFVDADNYI--PGAVNEYVK 182 (393)
T ss_pred ecCcchHHHHHHHHHH---HhCCCeEeEeecccCC--CchHHHHHH
Confidence 4569888854 3433 3588999999999998 567777543
No 142
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=39.21 E-value=19 Score=30.28 Aligned_cols=30 Identities=33% Similarity=1.093 Sum_probs=25.3
Q ss_pred ccccccccccccCCCCeeecCCCC-CCCcccchhH
Q 039060 36 VCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYE 69 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC-~FpvCRpCye 69 (1040)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987652 4488999999 9999999995
No 143
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=37.84 E-value=12 Score=36.95 Aligned_cols=29 Identities=21% Similarity=0.565 Sum_probs=18.0
Q ss_pred ecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 54 VACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 54 vaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
.-|+.|+ ++++..+-...||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcEE
Confidence 4466665 3444444456799999875444
No 144
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=37.26 E-value=11 Score=37.08 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=17.5
Q ss_pred ecCCCCCCCcccchhHHHHhhCC-CCCCCChhhhhcc
Q 039060 54 VACNECGFPVCRPCYEYERREGT-QVCPQCKTRYKRL 89 (1040)
Q Consensus 54 vaC~eC~FpvCRpCyeyerkeG~-~~CpqCkt~Ykr~ 89 (1040)
.-|+.|+ ++++..+-. -.||+|+.+-.+.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~i 100 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDMLRI 100 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCcEE
Confidence 4477776 245544443 5699999764443
No 145
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.05 E-value=27 Score=41.58 Aligned_cols=53 Identities=25% Similarity=0.551 Sum_probs=37.2
Q ss_pred CCCCCCCC-cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 27 KPLKNLDA-QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 27 ~~~~~~~~-~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
+.+..+.. ..|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555544 48999998641 2333 368999999999765443 458999999874
No 146
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=37.02 E-value=44 Score=29.65 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=36.4
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCC-CCCCCCh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT-QVCPQCK 83 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~-~~CpqCk 83 (1040)
....|..||-.|.-.+.+ .-.+|.+||=-+-.=|+ .-||-++ -.||.|+
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCG 55 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCC
Confidence 345899999998655555 45579999987555576 6678777 5799997
No 147
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.87 E-value=11 Score=29.13 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=12.4
Q ss_pred HHHhhCCCCCCCChhhhhc
Q 039060 70 YERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 70 yerkeG~~~CpqCkt~Ykr 88 (1040)
|+-++....||.|+.+-..
T Consensus 11 y~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred ECCCcCCCcCcCCCCcHHH
Confidence 3433466899999876543
No 148
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=36.58 E-value=2.4e+02 Score=31.25 Aligned_cols=61 Identities=20% Similarity=0.417 Sum_probs=44.6
Q ss_pred EEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcC
Q 039060 333 DIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAI 402 (1040)
Q Consensus 333 DV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~i 402 (1040)
.|+|+|-. ..|-||-.|+.++.+..++.+.+.|+=-.||...+...-| .-.+++ ||+.|+.
T Consensus 3 ~iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll--~g~~~~----l~~~y~~ 63 (224)
T PF09623_consen 3 NILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL--DGGLQR----LCQDYYL 63 (224)
T ss_pred eEEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH--HHHHHH----HHHhhcC
Confidence 36788887 7789999999999999999998888877887766543333 001333 7888764
No 149
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=36.54 E-value=32 Score=37.84 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=52.9
Q ss_pred hcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCC
Q 039060 680 KFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPK 759 (1040)
Q Consensus 680 ~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~ 759 (1040)
.+|-...+.++.+.+++|++.. | | || | -||-+++.||..+|.+.......
T Consensus 111 ~~Gg~~~~~k~~f~~VNGf~n~-----------------f-----~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 111 YFGGVLALTREQFRKVNGFSNA-----------------Y-----W----GW--G--GEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred ccccceeeEHHHHHHhCCcCCc-----------------C-----c----cC--C--cchHHHHHHHHHCCCeEEeccCc
Confidence 3677788888999999999862 2 2 34 2 48999999999999887665432
Q ss_pred cc----cc------cccCCCCHHHHHHHHHHhhccchhHH
Q 039060 760 RA----AF------KGSAPINLSDRLNQVLRWALGSVEIF 789 (1040)
Q Consensus 760 ~~----af------~G~aP~tl~~~l~QR~RWA~G~lQil 789 (1040)
.. .. ....|.-+.....++.||+..++.-+
T Consensus 161 ~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 161 TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 11 00 12234445555667778877666544
No 150
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.05 E-value=17 Score=27.34 Aligned_cols=28 Identities=39% Similarity=1.079 Sum_probs=12.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccch
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPC 67 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpC 67 (1040)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998863 357889999999998777
No 151
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=35.80 E-value=17 Score=31.88 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=15.3
Q ss_pred hhCCCCCCCChhhhh------cccCCCCCCCCCCccccc
Q 039060 73 REGTQVCPQCKTRYK------RLKGSPRVEGDEDEEDID 105 (1040)
Q Consensus 73 keG~~~CpqCkt~Yk------r~kg~p~v~gd~~e~~~~ 105 (1040)
.+.|..-|=|-+|-| -..|+=||+|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 456666676766665 356788888886654443
No 152
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.98 E-value=27 Score=44.10 Aligned_cols=72 Identities=31% Similarity=0.720 Sum_probs=47.2
Q ss_pred ceEEEEecCCC-CC-CCCCCCCcccccccccccccCCCC----eeecCCCCC--------------------CCcccchh
Q 039060 15 NELVVIHNHEE-PK-PLKNLDAQVCEICGDEIGLTVDGD----LFVACNECG--------------------FPVCRPCY 68 (1040)
Q Consensus 15 ~~~~~~~~~~~-~~-~~~~~~~~~c~iCg~~vg~~~~G~----~fvaC~eC~--------------------FpvCRpCy 68 (1040)
.+|..+++++. .+ ..-..+..+|.-|=.++ .|.+-. +|..|-.|| ||.|-.|-
T Consensus 80 ~~F~I~~S~~~~~~~~~I~pD~a~C~~Cl~Ei-~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~ 158 (750)
T COG0068 80 TDFRIRKSEGKGNKNTQIPPDAATCEDCLEEI-FDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCD 158 (750)
T ss_pred CceEEEecCCCCCcccccCCchhhhHHHHHHh-cCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHH
Confidence 35556666332 22 22244566999999997 444332 699999994 99999997
Q ss_pred H-HH----Hh--hCCCCCCCChhhhh
Q 039060 69 E-YE----RR--EGTQVCPQCKTRYK 87 (1040)
Q Consensus 69 e-ye----rk--eG~~~CpqCkt~Yk 87 (1040)
. |+ || --.-+||.|+-.|.
T Consensus 159 ~EY~dP~nRRfHAQp~aCp~CGP~~~ 184 (750)
T COG0068 159 KEYKDPLNRRFHAQPIACPKCGPHLF 184 (750)
T ss_pred HHhcCccccccccccccCcccCCCeE
Confidence 4 33 33 22369999997553
No 153
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=34.79 E-value=31 Score=27.98 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=31.8
Q ss_pred cccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChh
Q 039060 37 CEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKT 84 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt 84 (1040)
|.+|-.+. +++..+++- .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88899887 333333332 679999999996554 67789999985
No 154
>PRK11827 hypothetical protein; Provisional
Probab=34.35 E-value=26 Score=31.06 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=18.2
Q ss_pred CcccchhHHHHhhCCCCCCCChhhhhcccCCC
Q 039060 62 PVCRPCYEYERREGTQVCPQCKTRYKRLKGSP 93 (1040)
Q Consensus 62 pvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p 93 (1040)
|+|+-=.+|...+..-.|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 45544444443333467888888886654444
No 155
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=33.54 E-value=2.1e+02 Score=31.02 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCCCCc--hhhHHHHHHHHHHHHHHHHHHHhhc-CCCCcchh
Q 039060 943 TTVLIINLVGVVAGISDAINNGYQSWG--PLFGKLFFAFWVILHLYPFLKGLMG-RQNRTPTI 1002 (1040)
Q Consensus 943 ~tLlllnliaiv~Gi~~~i~~g~~~w~--~l~g~l~~~~Wvi~~l~Pfl~gL~g-R~~r~P~~ 1002 (1040)
..|+++.+++++-|+.-.++...+..| .++...+..+++++.+|-|+--+.| |..|.++.
T Consensus 100 ssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 100 SSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW 162 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH
Confidence 346777788888888877765433333 2444566777888888888777766 33466664
No 156
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=33.46 E-value=22 Score=36.81 Aligned_cols=46 Identities=28% Similarity=0.631 Sum_probs=40.7
Q ss_pred cccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 43 EIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 43 ~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-||+..+|-.-+-|--|||.-|..=.|-++..-+-.=|+|.-+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 4788889999999999999999998888888888899999999953
No 157
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.98 E-value=12 Score=31.82 Aligned_cols=8 Identities=50% Similarity=1.290 Sum_probs=4.3
Q ss_pred CCCCChhh
Q 039060 78 VCPQCKTR 85 (1040)
Q Consensus 78 ~CpqCkt~ 85 (1040)
.||+|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55655543
No 158
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=32.05 E-value=33 Score=31.52 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.2
Q ss_pred hcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCC
Q 039060 680 KFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMP 758 (1040)
Q Consensus 680 ~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~ 758 (1040)
.+|-...+.++.+.++||+++. | . || |- ||.+++.|+..+|.+......
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~-----------------f---~------gW--G~--ED~Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDER-----------------F---W------GW--GG--EDDDLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS---------------------T------SC--SS--HHHHHHHHHHHTT---B-SST
T ss_pred eeEEEEEEeHHHHHHcCCCCcc-----------------c---c------cc--Cc--cHHHHHHHHHHcCCeEEecCC
Confidence 4567777888889999999862 1 1 23 33 999999999999988766543
No 159
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=32.01 E-value=42 Score=29.85 Aligned_cols=48 Identities=33% Similarity=0.680 Sum_probs=34.5
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCC-CCCCCCh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT-QVCPQCK 83 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~-~~CpqCk 83 (1040)
..+|-.||-.|-..+.+-.| +|..||=-+-.-|- --||-|| -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 45899999998877776655 79999944444443 3367777 5799886
No 160
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=31.91 E-value=53 Score=37.82 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCCceEEE
Q 039060 520 NALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDPQTGRKVCYV 569 (1040)
Q Consensus 520 NallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp~~g~~va~V 569 (1040)
|.+++. +..+||+++|.|++ |.+++-+....+...-....+.+||
T Consensus 120 NvAr~~----a~T~~v~~~DvD~~-ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 120 NVARSG----ARTDYVFLLDVDFL-PSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred HHHHHh----cCcceEEEecceee-eCcchHHHHHHHhhhhccCCceEEE
Confidence 555543 57899999999998 6877666666555322234477777
No 161
>PRK14973 DNA topoisomerase I; Provisional
Probab=31.84 E-value=27 Score=45.84 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=31.7
Q ss_pred ccccccccccccc--CCCCeeecCCCCCCCcccchhHHHHh-hC-----CCCCCCChhh
Q 039060 35 QVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERR-EG-----TQVCPQCKTR 85 (1040)
Q Consensus 35 ~~c~iCg~~vg~~--~~G~~fvaC~eC~FpvCRpCyeyerk-eG-----~~~CpqCkt~ 85 (1040)
..|..||.++-.. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999875432 3454 99996 67888855544222 12 3689999973
No 162
>PRK07219 DNA topoisomerase I; Validated
Probab=31.68 E-value=24 Score=45.78 Aligned_cols=53 Identities=26% Similarity=0.711 Sum_probs=30.8
Q ss_pred Cccccccccccccc--CCCCeeecCCCCCCCcccchhHHHH----hhCCCCCCCChhhhhcc
Q 039060 34 AQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYER----REGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~--~~G~~fvaC~eC~FpvCRpCyeyer----keG~~~CpqCkt~Ykr~ 89 (1040)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34677787664332 2455 88885 6777753332211 12347899998866543
No 163
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=31.53 E-value=47 Score=40.04 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCC-CCeEEEEecCCCChhh
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPV-DKISCYISDDGASIIT 379 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~-~kl~vyv~DDG~~~lt 379 (1040)
...|.+-|+|-+|| -| .-+.+||.+++... |. ++..|+|+.||....|
T Consensus 90 ~~~~~~pVlV~AcN---Rp-~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~ 138 (434)
T PF03071_consen 90 NKEPVIPVLVFACN---RP-DYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEV 138 (434)
T ss_dssp -------EEEEESS----T-T-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHH
T ss_pred cCCCcceEEEEecC---Cc-HHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHH
Confidence 45677888999998 54 78999999999988 65 6889999999987643
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.29 E-value=21 Score=43.56 Aligned_cols=50 Identities=28% Similarity=0.631 Sum_probs=31.2
Q ss_pred ccCCCC-eeecCCCCCCC-cccchh---HHHHhhCCCCCCCChhhhhcccCCCCC
Q 039060 46 LTVDGD-LFVACNECGFP-VCRPCY---EYERREGTQVCPQCKTRYKRLKGSPRV 95 (1040)
Q Consensus 46 ~~~~G~-~fvaC~eC~Fp-vCRpCy---eyerkeG~~~CpqCkt~Ykr~kg~p~v 95 (1040)
++-+|- .++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 344565 47778888765 366663 333455556677777777666666643
No 165
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=31.23 E-value=23 Score=44.13 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=26.4
Q ss_pred CCCCcccccccccccccCCCCe-----------eec-----CCCCCCCcccchhHHHHhhC
Q 039060 31 NLDAQVCEICGDEIGLTVDGDL-----------FVA-----CNECGFPVCRPCYEYERREG 75 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~-----------fva-----C~eC~FpvCRpCyeyerkeG 75 (1040)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..- .+|
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l-~~G 254 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL-EEG 254 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH-HHH
Confidence 4455689999999444444322 222 0123789999999543 444
No 166
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=31.22 E-value=31 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=26.3
Q ss_pred ccccccccccccCCCCeeecCCCCC-CCcccchhHHHHhhC
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECG-FPVCRPCYEYERREG 75 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~-FpvCRpCyeyerkeG 75 (1040)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|--+
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~ 37 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPS 37 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCC
Confidence 6999999973 2666677776 999999996554433
No 167
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.20 E-value=45 Score=38.46 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=21.3
Q ss_pred CCcccccccccc--c--c---cCCCCeeecCCCCCC
Q 039060 33 DAQVCEICGDEI--G--L---TVDGDLFVACNECGF 61 (1040)
Q Consensus 33 ~~~~c~iCg~~v--g--~---~~~G~~fvaC~eC~F 61 (1040)
+.+.|.+||..= + . +.+|.-+.-|.-|+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t 218 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT 218 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC
Confidence 345999999881 1 1 258889999988864
No 168
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=30.85 E-value=32 Score=29.89 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.4
Q ss_pred ccccccccccccC
Q 039060 36 VCEICGDEIGLTV 48 (1040)
Q Consensus 36 ~c~iCg~~vg~~~ 48 (1040)
.|..||.+|.++.
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 7889999887753
No 169
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.81 E-value=35 Score=28.13 Aligned_cols=45 Identities=24% Similarity=0.729 Sum_probs=31.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHh-----hCCCCCCCChh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-----EGTQVCPQCKT 84 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk-----eG~~~CpqCkt 84 (1040)
+|++||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 566778999999986666666654422 33566776653
No 170
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=29.69 E-value=19 Score=37.99 Aligned_cols=34 Identities=41% Similarity=0.957 Sum_probs=22.1
Q ss_pred cccccccccccc----cCCCC-eeecCCCCCCCcccchh
Q 039060 35 QVCEICGDEIGL----TVDGD-LFVACNECGFPVCRPCY 68 (1040)
Q Consensus 35 ~~c~iCg~~vg~----~~~G~-~fvaC~eC~FpvCRpCy 68 (1040)
.+|..||.+.-. ..+|+ ..|.-+|==.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988333 24455 35666788899999998
No 171
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.60 E-value=28 Score=37.92 Aligned_cols=39 Identities=26% Similarity=0.652 Sum_probs=25.7
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~ 85 (1040)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998873321 23788887654332 3589999865
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.35 E-value=34 Score=43.37 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=6.7
Q ss_pred CCCCCCChhhh
Q 039060 76 TQVCPQCKTRY 86 (1040)
Q Consensus 76 ~~~CpqCkt~Y 86 (1040)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776553
No 173
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=28.88 E-value=28 Score=35.78 Aligned_cols=45 Identities=29% Similarity=0.723 Sum_probs=32.8
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCccc-chhHHHHhhCCCCCCCChhhhhccc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCR-PCYEYERREGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCR-pCyeyerkeG~~~CpqCkt~Ykr~k 90 (1040)
.++|.||-+.+- -.-|..|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 468888977542 3679999999996 899554 33689988765443
No 174
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.80 E-value=17 Score=36.91 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=8.8
Q ss_pred CCCCCCCChhhh
Q 039060 75 GTQVCPQCKTRY 86 (1040)
Q Consensus 75 G~~~CpqCkt~Y 86 (1040)
..-.||+|+.+=
T Consensus 106 ~~~~CP~Cgs~~ 117 (135)
T PRK03824 106 AFLKCPKCGSRD 117 (135)
T ss_pred cCcCCcCCCCCC
Confidence 445699999763
No 175
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.48 E-value=22 Score=31.35 Aligned_cols=27 Identities=41% Similarity=1.054 Sum_probs=20.0
Q ss_pred cccccccccccccCCCCeeecCCCCCCCc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
-+|.-||.+-.+. .|| .+.|.||||.|
T Consensus 21 YiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEecccccccccc-CCC-cEehhhcchHH
Confidence 4899999885553 355 47899999976
No 176
>PRK04296 thymidine kinase; Provisional
Probab=28.42 E-value=27 Score=36.92 Aligned_cols=35 Identities=31% Similarity=0.639 Sum_probs=24.3
Q ss_pred ccccccccccccc----------CCCCe-eecCCCCCCCcccchhH
Q 039060 35 QVCEICGDEIGLT----------VDGDL-FVACNECGFPVCRPCYE 69 (1040)
Q Consensus 35 ~~c~iCg~~vg~~----------~~G~~-fvaC~eC~FpvCRpCye 69 (1040)
.+|..||.+.-.| .+|+. .+--+|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 4899999873332 24454 46666767899999994
No 177
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=28.36 E-value=16 Score=26.81 Aligned_cols=15 Identities=27% Similarity=0.804 Sum_probs=10.2
Q ss_pred HHhhCCCCCCCChhh
Q 039060 71 ERREGTQVCPQCKTR 85 (1040)
Q Consensus 71 erkeG~~~CpqCkt~ 85 (1040)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 336667778888765
No 178
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=15 Score=42.58 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=37.9
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
+|.||-+=+-.+- -=-||+--.|+.|.--..++||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 8999988765542 22489999999999999999999999999876
No 179
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.17 E-value=16 Score=26.31 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=5.3
Q ss_pred hhCCCCCCCChh
Q 039060 73 REGTQVCPQCKT 84 (1040)
Q Consensus 73 keG~~~CpqCkt 84 (1040)
.++.+-||+|++
T Consensus 10 ~~~~~fC~~CG~ 21 (23)
T PF13240_consen 10 EDDAKFCPNCGT 21 (23)
T ss_pred CCcCcchhhhCC
Confidence 334444444444
No 180
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=27.17 E-value=37 Score=31.02 Aligned_cols=30 Identities=33% Similarity=0.754 Sum_probs=23.4
Q ss_pred CCcccccccc--ccc-ccCCCCeeecCCCCCCC
Q 039060 33 DAQVCEICGD--EIG-LTVDGDLFVACNECGFP 62 (1040)
Q Consensus 33 ~~~~c~iCg~--~vg-~~~~G~~fvaC~eC~Fp 62 (1040)
.|-+|.-|+. .|. ..+||...+-|-+|||.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 4668999984 444 46788999999999984
No 181
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=26.16 E-value=44 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.841 Sum_probs=23.2
Q ss_pred ccccccccccccCCCCeeecCCCC-CCCcccchhH
Q 039060 36 VCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYE 69 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC-~FpvCRpCye 69 (1040)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588898843 24 47789999 8999999995
No 182
>PRK08359 transcription factor; Validated
Probab=26.06 E-value=24 Score=37.54 Aligned_cols=31 Identities=45% Similarity=1.018 Sum_probs=19.7
Q ss_pred Cccccccccccccc-----CCCCeeecCCCCCCCcccchh-HHHH
Q 039060 34 AQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCY-EYER 72 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~-----~~G~~fvaC~eC~FpvCRpCy-eyer 72 (1040)
...|.|||.+|--. .+|-. .-||..|| .|-.
T Consensus 6 ~~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~G~ 42 (176)
T PRK08359 6 PRYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKYGR 42 (176)
T ss_pred cceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHhCC
Confidence 34599999997322 24443 45778888 6644
No 183
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.97 E-value=2.2e+02 Score=36.45 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=28.6
Q ss_pred CCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHH
Q 039060 512 HHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMC 555 (1040)
Q Consensus 512 hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amc 555 (1040)
.+.|+-.|=-++-... +.+.+||-.+|||.|+ |.++.|-+-
T Consensus 146 r~gk~egm~~g~~la~-~~g~~yvgfidadny~--pg~v~ey~~ 186 (694)
T PRK14502 146 RSGKAEGMILGIILTM-FSGRDYVGFIDTDNYI--PGAVWEYAK 186 (694)
T ss_pred ecCcchHHHHHHHHHH-hcCCceEeEeeccCCC--CchHHHHHH
Confidence 4569988854332221 4688999999999998 566776443
No 184
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=25.82 E-value=29 Score=35.75 Aligned_cols=43 Identities=37% Similarity=0.814 Sum_probs=25.8
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHH-HhhCCCCCCCChh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREGTQVCPQCKT 84 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye-rkeG~~~CpqCkt 84 (1040)
.+..|..||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557999985 46999988842 122211111 1234478999986
No 185
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.74 E-value=33 Score=45.80 Aligned_cols=48 Identities=27% Similarity=0.667 Sum_probs=30.5
Q ss_pred cccccccccccccCCCCeeecCCCCCCCc-----ccchhHHHH--hhCCCCCCCChhhhhcc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPV-----CRPCYEYER--REGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~Fpv-----CRpCyeyer--keG~~~CpqCkt~Ykr~ 89 (1040)
..|.-||..+-. .-|.+||-+. |..|=-.-- ..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888876421 2788888664 777753211 12355899999876544
No 186
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.71 E-value=36 Score=44.37 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=32.2
Q ss_pred CCccccccccc--cccc-CCCCeeecCCCCCCCcccchhHHHH-----------hhCCCCCCCChhhhhcccC
Q 039060 33 DAQVCEICGDE--IGLT-VDGDLFVACNECGFPVCRPCYEYER-----------REGTQVCPQCKTRYKRLKG 91 (1040)
Q Consensus 33 ~~~~c~iCg~~--vg~~-~~G~~fvaC~eC~FpvCRpCyeyer-----------keG~~~CpqCkt~Ykr~kg 91 (1040)
....|..||.. +... -.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 45689999864 2222 345 599994 5777742111111 1124689999876655443
No 187
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=25.71 E-value=42 Score=25.38 Aligned_cols=28 Identities=39% Similarity=0.995 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccch
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPC 67 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpC 67 (1040)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998775 3443889999999887665
No 188
>PF12773 DZR: Double zinc ribbon
Probab=25.49 E-value=45 Score=27.59 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=7.3
Q ss_pred Cccccccccccc
Q 039060 34 AQVCEICGDEIG 45 (1040)
Q Consensus 34 ~~~c~iCg~~vg 45 (1040)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446666666655
No 189
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=24.56 E-value=30 Score=37.58 Aligned_cols=25 Identities=40% Similarity=1.008 Sum_probs=19.1
Q ss_pred ccccccccccccc----CCCCeeecCCCCCCCcccchhH
Q 039060 35 QVCEICGDEIGLT----VDGDLFVACNECGFPVCRPCYE 69 (1040)
Q Consensus 35 ~~c~iCg~~vg~~----~~G~~fvaC~eC~FpvCRpCye 69 (1040)
-+|..||+-++-. .||+ |||+|||+
T Consensus 173 v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 173 VRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeccccCcccccchhhhcCCc----------eecccccc
Confidence 5999999986543 3565 68999996
No 190
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=24.47 E-value=1.6e+03 Score=28.81 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCCcc
Q 039060 819 YPFTSIPLLAYCVLPAICLLTDKFIM 844 (1040)
Q Consensus 819 y~l~slp~liy~llP~l~Ll~G~~ii 844 (1040)
-+.+++..+..+.+|.+|...|..-|
T Consensus 46 ~~~~a~~~i~liaip~i~~~ig~~~f 71 (952)
T TIGR02921 46 PIEFALALILLIAIPAICIGIGGTCF 71 (952)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 35567788888899999988775544
No 191
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=45 Score=37.80 Aligned_cols=44 Identities=32% Similarity=0.695 Sum_probs=25.8
Q ss_pred CCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCCh
Q 039060 31 NLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCK 83 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCk 83 (1040)
...+..|..||+- -|++|-.|+= -||-=++.|..++-+-|+.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~G-S~kv~~~~~~~~~~~rC~~CN 269 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCHG-SCKVHEEEEDDGGVLRCLECN 269 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCCC-ceeeeeeccCCCcEEECcccC
Confidence 5667899999964 5899988841 122222233444445555554
No 192
>PTZ00293 thymidine kinase; Provisional
Probab=24.17 E-value=34 Score=37.38 Aligned_cols=35 Identities=23% Similarity=0.716 Sum_probs=23.0
Q ss_pred ccccccccccccc----CCCCe-eecCCCCCCCcccchhH
Q 039060 35 QVCEICGDEIGLT----VDGDL-FVACNECGFPVCRPCYE 69 (1040)
Q Consensus 35 ~~c~iCg~~vg~~----~~G~~-fvaC~eC~FpvCRpCye 69 (1040)
.+|..||.+.-.| ++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 34444 33333545789999995
No 193
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.53 E-value=4.4e+02 Score=28.34 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhc
Q 039060 939 LIPPTTVLIINLVGVVAGISDAINN 963 (1040)
Q Consensus 939 ~iP~~tLlllnliaiv~Gi~~~i~~ 963 (1040)
++.-..|+++-+++++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777788888888776643
No 194
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=23.52 E-value=42 Score=40.49 Aligned_cols=33 Identities=36% Similarity=0.903 Sum_probs=23.1
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
.+.+.|.+|||+ .||- .-|-.-|-+||-=|||.
T Consensus 267 ~~e~~CAVCgDn----------AaCq---------------HYGvRTCEGCKGFFKRT 299 (605)
T KOG4217|consen 267 SAEGLCAVCGDN----------AACQ---------------HYGVRTCEGCKGFFKRT 299 (605)
T ss_pred CccceeeecCCh----------HHhh---------------hcCccccccchHHHHHH
Confidence 346799999998 4663 23556677777777774
No 195
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.04 E-value=56 Score=41.80 Aligned_cols=74 Identities=24% Similarity=0.591 Sum_probs=50.4
Q ss_pred ceEEEEecCCC-CC--CCCCCCCcccccccccccccCC----CCeeecCCCCC--------------------CCcccch
Q 039060 15 NELVVIHNHEE-PK--PLKNLDAQVCEICGDEIGLTVD----GDLFVACNECG--------------------FPVCRPC 67 (1040)
Q Consensus 15 ~~~~~~~~~~~-~~--~~~~~~~~~c~iCg~~vg~~~~----G~~fvaC~eC~--------------------FpvCRpC 67 (1040)
..|.++++..+ .. .+-..+-.+|.-|-+++ .|.+ +=+|.-|..|| |++|..|
T Consensus 46 ~~F~I~~S~~~~~~~~~~ippD~a~C~~Cl~E~-~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C 124 (711)
T TIGR00143 46 TTFRIRESKNGGLSLLSIIPADVATCSDCLEEM-LDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDC 124 (711)
T ss_pred CCeEEEecCCCCCCcceecCCchhhHHHHHHHh-cCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHH
Confidence 36777776332 11 23345667999999998 4443 45899999994 9999999
Q ss_pred hHHH-----Hhh--CCCCCCCChhhhhcc
Q 039060 68 YEYE-----RRE--GTQVCPQCKTRYKRL 89 (1040)
Q Consensus 68 yeye-----rke--G~~~CpqCkt~Ykr~ 89 (1040)
...- |+- ---+||.|+=|..-.
T Consensus 125 ~~ey~~p~~rr~h~~~~~C~~Cgp~l~l~ 153 (711)
T TIGR00143 125 AKEYKDPLDRRFHAQPIACPRCGPQLNFV 153 (711)
T ss_pred HHHhcCCccccCCCCCccCCCCCcEEEEE
Confidence 8432 332 225899999888643
No 196
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.01 E-value=30 Score=33.33 Aligned_cols=44 Identities=34% Similarity=0.633 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccCCCC-------CCCCCCCCCCCccceeeeccCCCC
Q 039060 434 KREYEEFKVRINAIVARASKIPPEGWIMPDG-------TPWPGNNTRDHPGMIQVFLGQSGG 488 (1040)
Q Consensus 434 kreYee~k~ri~~l~~k~~~vp~e~w~m~dg-------~~w~g~~~rdHp~iiqv~l~~~g~ 488 (1040)
|.||+|+|.. .-++|.|+|= +.|.-.+--.||.+.+-|--.+||
T Consensus 20 k~eyqel~~~-----------~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKEK-----------DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHHh-----------hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 4699999852 1368999884 345444456888888877666664
No 197
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.93 E-value=28 Score=31.03 Aligned_cols=17 Identities=53% Similarity=1.081 Sum_probs=14.4
Q ss_pred HhhCCCCCCCChhhhhc
Q 039060 72 RREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 72 rkeG~~~CpqCkt~Ykr 88 (1040)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 198
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.61 E-value=35 Score=43.23 Aligned_cols=44 Identities=27% Similarity=0.702 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCC----------cccchhHHHHhhCCCCCCCChhhhhcccC
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFP----------VCRPCYEYERREGTQVCPQCKTRYKRLKG 91 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~Fp----------vCRpCyeyerkeG~~~CpqCkt~Ykr~kg 91 (1040)
.|.-||.. .-|..|+-| .|+-|- |...-. ..||+|+...-+..|
T Consensus 383 ~C~~Cg~~----------~~C~~C~~~l~~h~~~~~l~Ch~Cg-~~~~~~-~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 383 LCRDCGWV----------AECPHCDASLTLHRFQRRLRCHHCG-YQEPIP-KACPECGSTDLVPVG 436 (679)
T ss_pred EhhhCcCc----------cCCCCCCCceeEECCCCeEECCCCc-CCCCCC-CCCCCCcCCeeEEee
No 199
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=22.56 E-value=41 Score=26.70 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=23.2
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHH
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE 71 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye 71 (1040)
...|..|++.. +-.-|.+|.-++|..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45788887652 45789999999999999653
No 200
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=42 Score=35.85 Aligned_cols=44 Identities=27% Similarity=0.711 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKT 84 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt 84 (1040)
....|.||-+..-.. ....|+-..|+.|-+.-.. +.-.||.|+.
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 345899999886332 5667899999999988877 8899999993
No 201
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.16 E-value=24 Score=30.74 Aligned_cols=17 Identities=35% Similarity=0.845 Sum_probs=13.7
Q ss_pred hhCCCCCCCChhhhhcc
Q 039060 73 REGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 73 keG~~~CpqCkt~Ykr~ 89 (1040)
++.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 45557899999999873
No 202
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=22.13 E-value=45 Score=36.02 Aligned_cols=26 Identities=35% Similarity=0.852 Sum_probs=16.5
Q ss_pred cccccccc-c---cccC-CCCeeecCCCCCC
Q 039060 36 VCEICGDE-I---GLTV-DGDLFVACNECGF 61 (1040)
Q Consensus 36 ~c~iCg~~-v---g~~~-~G~~fvaC~eC~F 61 (1040)
.|..||++ + -+.+ -+++.+-|+|||.
T Consensus 8 ~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 8 ECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred ECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 68899943 3 1223 4457888888874
No 203
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=22.12 E-value=33 Score=33.39 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=25.1
Q ss_pred ccccccccccc-CCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 37 CEICGDEIGLT-VDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 37 c~iCg~~vg~~-~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
|.+||...+.. ..-+.|.=+ .+.+.|-.|++ .||+|++.|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999653333 333344445 35555555555 699999987
No 204
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.10 E-value=98 Score=26.10 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCeeecCCCCCCC---cccchhHHHHh-hCCCCCCCCh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFP---VCRPCYEYERR-EGTQVCPQCK 83 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~Fp---vCRpCyeyerk-eG~~~CpqCk 83 (1040)
+|.||-+ +-+++..++.+| .|.-. |=+.|.+.=.+ .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 334444457778 45421 34567765544 4467899996
No 205
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=21.21 E-value=36 Score=26.22 Aligned_cols=25 Identities=48% Similarity=1.145 Sum_probs=11.1
Q ss_pred cccccccccccccCCCCeeecCCCCCC
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGF 61 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~F 61 (1040)
+.|..|+.+-.. +||..+| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357788877655 6777654 777775
No 206
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=21.15 E-value=50 Score=39.38 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=23.2
Q ss_pred eeecCCCCCCCcccchhHHHHh-hCCCCCCCChhhhhccc
Q 039060 52 LFVACNECGFPVCRPCYEYERR-EGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 52 ~fvaC~eC~FpvCRpCyeyerk-eG~~~CpqCkt~Ykr~k 90 (1040)
..++|+||+--+=+| ..+ .+...||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 367899998764333 112 23357999999987653
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.66 E-value=32 Score=43.25 Aligned_cols=46 Identities=35% Similarity=0.813 Sum_probs=31.5
Q ss_pred cccccccccccccCCCCeeecCCCC--CCCcccc----hhHHHHhhCCCCCCCChhhhhcc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNEC--GFPVCRP----CYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC--~FpvCRp----CyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
--|.+||.+|-- --..|.|| .||+|-. =-++- --.||.||-+-..|
T Consensus 1118 vdc~~cg~~i~~-----~~~~c~ec~~kfP~CiasG~pIt~~~----fWlC~~CkH~a~~~ 1169 (1189)
T KOG2041|consen 1118 VDCSVCGAKIDP-----YDLQCSECQTKFPVCIASGRPITDNI----FWLCPRCKHRAHQH 1169 (1189)
T ss_pred eeeeecCCcCCc-----cCCCChhhcCcCceeeccCCccccce----EEEccccccccccc
Confidence 479999998732 24679999 7999953 22221 24799999776544
No 208
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.53 E-value=36 Score=32.56 Aligned_cols=10 Identities=40% Similarity=1.315 Sum_probs=7.9
Q ss_pred CCCCCChhhh
Q 039060 77 QVCPQCKTRY 86 (1040)
Q Consensus 77 ~~CpqCkt~Y 86 (1040)
--||.||...
T Consensus 77 SRCP~CKSE~ 86 (97)
T COG3357 77 SRCPKCKSEW 86 (97)
T ss_pred ccCCcchhhc
Confidence 5799999754
No 209
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.45 E-value=45 Score=42.68 Aligned_cols=44 Identities=34% Similarity=0.790 Sum_probs=0.0
Q ss_pred cccccccccccCCCCeeecCCCC----------CCCcccchhHHHHhhCCCCCCCChhhhhcccCC
Q 039060 37 CEICGDEIGLTVDGDLFVACNEC----------GFPVCRPCYEYERREGTQVCPQCKTRYKRLKGS 92 (1040)
Q Consensus 37 c~iCg~~vg~~~~G~~fvaC~eC----------~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~ 92 (1040)
|+.||.- .-|..| +-..|+-|= |. +.--+.||+|++.+-+..|.
T Consensus 438 C~~Cg~v----------~~Cp~Cd~~lt~H~~~~~L~CH~Cg-~~-~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYI----------AECPNCDSPLTLHKATGQLRCHYCG-YQ-EPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCc----------ccCCCCCcceEEecCCCeeEeCCCC-CC-CCCCCCCCCCCCCeeEEecc
No 210
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.41 E-value=46 Score=39.90 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=23.0
Q ss_pred ecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhccc
Q 039060 54 VACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 54 vaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~k 90 (1040)
++|+||+--+..|=- +..+...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCCC
Confidence 789999877554311 1223467999999987663
No 211
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=20.35 E-value=56 Score=40.61 Aligned_cols=41 Identities=29% Similarity=0.632 Sum_probs=24.2
Q ss_pred CcccccccccccccCCCC----------eeec--CCCCCCCcccchhHHHHhhC
Q 039060 34 AQVCEICGDEIGLTVDGD----------LFVA--CNECGFPVCRPCYEYERREG 75 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~----------~fva--C~eC~FpvCRpCyeyerkeG 75 (1040)
..+|.|||.+--++.+-. -|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 579999999733222211 1232 112279999999954 3455
No 212
>PRK12438 hypothetical protein; Provisional
Probab=20.27 E-value=2.2e+03 Score=29.05 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHhh
Q 039060 973 GKLFFAFWVILHLYPFLKGLMGRQNRTPTIVVIWSILLASIFSLLW 1018 (1040)
Q Consensus 973 g~l~~~~Wvi~~l~Pfl~gL~gR~~r~P~~v~~~s~~la~~f~~l~ 1018 (1040)
.+.++++-.++...-|+-+++.|+-|+|.+.+..-++.++++..+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555566667777888999887766555555544444
No 213
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.16 E-value=43 Score=28.18 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=29.8
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE 74 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke 74 (1040)
.+.|.+|+...+...+ -.-|.-||--+|..|-.+....
T Consensus 2 ~~~C~~C~~~F~~~~r---k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR---RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc---ccccCcCcCCcChHHcCCeeec
Confidence 4689999998887433 3679999999999999877553
No 214
>PF04641 Rtf2: Rtf2 RING-finger
Probab=20.16 E-value=67 Score=35.93 Aligned_cols=51 Identities=22% Similarity=0.547 Sum_probs=37.4
Q ss_pred CCCcccccccccccccCCCC-eeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTVDGD-LFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~-~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...-+|.|++... +|. -||+=--||=-+|..|.+-- + .+..||.|.++|..
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3344999998776 454 58887788877778887444 4 45679999999964
Done!