Query 039060
Match_columns 1040
No_of_seqs 437 out of 1969
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 6E-51 2E-55 500.7 49.3 491 252-993 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 7E-45 2.4E-49 326.0 7.6 84 26-109 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.6 4.8E-15 1.6E-19 176.2 17.6 128 326-578 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.6 7.1E-14 2.4E-18 160.9 19.6 116 326-560 25-143 (472)
5 3bcv_A Putative glycosyltransf 99.5 4.3E-14 1.5E-18 146.0 14.8 110 328-560 3-112 (240)
6 2d7i_A Polypeptide N-acetylgal 99.5 6.2E-14 2.1E-18 166.4 16.4 114 327-559 109-223 (570)
7 1qg8_A Protein (spore coat pol 99.5 8.5E-15 2.9E-19 153.0 6.6 124 330-576 1-129 (255)
8 2ffu_A Ppgalnact-2, polypeptid 99.5 1.1E-13 3.6E-18 161.1 13.3 113 326-560 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.4 4.6E-13 1.6E-17 159.2 13.7 124 327-577 372-496 (625)
10 3ckj_A Putative uncharacterize 99.1 2.4E-10 8.4E-15 126.1 13.5 49 328-381 46-94 (329)
11 3l7i_A Teichoic acid biosynthe 99.1 7.5E-12 2.5E-16 152.3 0.0 111 329-560 1-111 (729)
12 4fix_A UDP-galactofuranosyl tr 99.1 2.6E-10 8.8E-15 137.9 12.9 48 326-377 176-224 (657)
13 2fy7_A Beta-1,4-galactosyltran 98.9 2.5E-09 8.7E-14 117.1 7.7 79 682-790 176-264 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.5 2.6E-07 8.9E-12 105.2 11.4 49 328-381 92-142 (387)
15 2nxv_A ATP synthase subunits r 98.1 1.9E-05 6.4E-10 83.7 13.6 46 515-569 62-112 (249)
16 1fo8_A Alpha-1,3-mannosyl-glyc 96.8 0.0023 7.8E-08 72.0 8.9 44 329-377 1-44 (343)
17 2bo4_A Mannosylglycerate synth 96.7 0.0055 1.9E-07 70.1 11.4 42 513-558 74-119 (397)
18 1e4u_A Transcriptional repress 96.6 0.002 6.9E-08 57.4 5.2 53 33-88 10-62 (78)
19 2zu9_A Mannosyl-3-phosphoglyce 96.1 0.019 6.6E-07 65.6 10.9 38 514-554 144-181 (394)
20 2wvl_A Mannosyl-3-phosphoglyce 96.0 0.0073 2.5E-07 68.1 6.8 42 329-379 52-93 (391)
21 1vyx_A ORF K3, K3RING; zinc-bi 88.5 0.33 1.1E-05 41.0 3.6 51 32-87 4-58 (60)
22 2ea6_A Ring finger protein 4; 87.1 0.44 1.5E-05 39.8 3.6 55 32-88 13-68 (69)
23 2d8s_A Cellular modulator of i 87.0 0.62 2.1E-05 41.6 4.7 56 30-88 11-70 (80)
24 1g25_A CDK-activating kinase a 86.2 0.49 1.7E-05 39.5 3.4 53 34-88 3-55 (65)
25 2csz_A Synaptotagmin-like prot 85.3 0.36 1.2E-05 43.0 2.2 62 10-73 1-62 (76)
26 1t1h_A Gspef-atpub14, armadill 85.2 0.41 1.4E-05 41.4 2.5 48 33-87 7-54 (78)
27 2ect_A Ring finger protein 126 84.6 1.8 6.3E-05 37.2 6.4 53 32-89 13-65 (78)
28 2xeu_A Ring finger protein 4; 83.6 0.3 1E-05 40.2 0.9 53 34-88 3-56 (64)
29 2ckl_B Ubiquitin ligase protei 82.9 0.59 2E-05 46.4 2.8 48 35-88 55-102 (165)
30 1iym_A EL5; ring-H2 finger, ub 82.4 1.2 4.3E-05 35.6 4.1 50 33-86 4-53 (55)
31 2ecm_A Ring finger and CHY zin 81.4 1.2 4.1E-05 35.6 3.7 50 33-86 4-53 (55)
32 2c2l_A CHIP, carboxy terminus 81.4 1.4 4.7E-05 46.6 5.1 49 32-87 206-254 (281)
33 3ng2_A RNF4, snurf, ring finge 81.1 0.68 2.3E-05 39.0 2.2 55 32-88 8-63 (71)
34 2ysl_A Tripartite motif-contai 81.1 0.86 2.9E-05 38.7 2.8 49 33-88 19-69 (73)
35 2ecy_A TNF receptor-associated 79.9 1 3.5E-05 37.7 2.9 49 33-88 14-62 (66)
36 3fl2_A E3 ubiquitin-protein li 79.3 1.1 3.6E-05 42.4 3.1 47 35-88 53-99 (124)
37 1v87_A Deltex protein 2; ring- 77.8 1.6 5.6E-05 40.3 3.8 59 33-91 24-97 (114)
38 2f42_A STIP1 homology and U-bo 76.9 1.3 4.4E-05 45.4 3.1 48 33-87 105-152 (179)
39 2ct2_A Tripartite motif protei 76.8 1.8 6.2E-05 37.8 3.7 53 33-88 14-68 (88)
40 2ecv_A Tripartite motif-contai 75.8 2.3 7.7E-05 36.7 4.0 49 33-88 18-71 (85)
41 2ecw_A Tripartite motif-contai 74.0 2.3 7.9E-05 36.6 3.6 48 34-88 19-71 (85)
42 1chc_A Equine herpes virus-1 r 74.0 3.6 0.00012 34.3 4.6 49 34-89 5-53 (68)
43 3lrq_A E3 ubiquitin-protein li 73.1 2 7E-05 39.2 3.1 47 35-87 23-69 (100)
44 2djb_A Polycomb group ring fin 72.7 5.3 0.00018 33.9 5.5 49 34-89 15-63 (72)
45 2kr4_A Ubiquitin conjugation f 71.7 3.2 0.00011 36.9 4.0 47 33-87 13-59 (85)
46 2kiz_A E3 ubiquitin-protein li 71.6 2.9 9.9E-05 35.0 3.5 53 32-89 12-64 (69)
47 2kre_A Ubiquitin conjugation f 71.2 1.8 6E-05 40.1 2.2 47 33-87 28-74 (100)
48 3l11_A E3 ubiquitin-protein li 67.5 1.4 4.9E-05 40.9 0.7 48 34-88 15-62 (115)
49 2ecn_A Ring finger protein 141 66.7 2.3 8E-05 35.7 1.9 48 33-89 14-61 (70)
50 2zet_C Melanophilin; complex, 66.6 0.89 3.1E-05 45.6 -0.9 51 33-85 67-117 (153)
51 1x4j_A Ring finger protein 38; 66.5 2.7 9.1E-05 36.0 2.2 52 33-89 22-73 (75)
52 3vk6_A E3 ubiquitin-protein li 66.0 2.6 9E-05 39.4 2.2 49 36-90 3-51 (101)
53 2y43_A E3 ubiquitin-protein li 65.9 3.6 0.00012 37.2 3.0 48 34-88 22-69 (99)
54 1z6u_A NP95-like ring finger p 65.2 3.6 0.00012 40.6 3.2 47 35-88 79-125 (150)
55 3hct_A TNF receptor-associated 65.1 3.1 0.0001 39.0 2.5 47 35-88 19-65 (118)
56 1wgm_A Ubiquitin conjugation f 64.3 3.5 0.00012 37.9 2.7 46 34-87 22-68 (98)
57 2gvi_A Conserved hypothetical 64.2 2.6 8.9E-05 43.9 2.0 29 32-70 170-202 (204)
58 1zbd_B Rabphilin-3A; G protein 63.6 2.9 0.0001 40.9 2.1 38 31-71 52-90 (134)
59 2ep4_A Ring finger protein 24; 63.5 6.3 0.00022 33.4 4.0 52 33-89 14-65 (74)
60 3vth_A Hydrogenase maturation 63.5 3.4 0.00012 51.0 3.1 74 16-89 92-196 (761)
61 2l0b_A E3 ubiquitin-protein li 62.9 3.6 0.00012 36.8 2.5 49 33-86 39-87 (91)
62 1jm7_A BRCA1, breast cancer ty 62.4 5 0.00017 36.6 3.4 47 35-88 22-70 (112)
63 2d8t_A Dactylidin, ring finger 62.3 4.9 0.00017 34.0 3.1 49 32-88 13-61 (71)
64 2csy_A Zinc finger protein 183 62.2 9 0.00031 33.1 4.8 46 34-87 15-60 (81)
65 2ecl_A Ring-box protein 2; RNF 60.8 5.3 0.00018 35.0 3.1 55 33-88 14-76 (81)
66 2ysj_A Tripartite motif-contai 60.3 7.1 0.00024 32.0 3.7 43 33-82 19-63 (63)
67 2yur_A Retinoblastoma-binding 60.1 6 0.00021 33.9 3.3 50 33-88 14-64 (74)
68 1rmd_A RAG1; V(D)J recombinati 59.4 5.2 0.00018 37.1 3.0 48 34-88 23-70 (116)
69 2ckl_A Polycomb group ring fin 58.8 4.8 0.00016 37.0 2.6 48 34-88 15-62 (108)
70 2egp_A Tripartite motif-contai 58.7 3.7 0.00013 35.1 1.7 48 34-88 12-65 (79)
71 4ayc_A E3 ubiquitin-protein li 57.1 4.9 0.00017 38.7 2.4 45 36-88 55-99 (138)
72 3hcs_A TNF receptor-associated 57.1 5 0.00017 39.8 2.6 47 35-88 19-65 (170)
73 1jm7_B BARD1, BRCA1-associated 57.0 5.3 0.00018 37.3 2.6 45 34-87 22-66 (117)
74 3h0g_L DNA-directed RNA polyme 56.9 5.9 0.0002 34.2 2.5 29 33-63 20-48 (63)
75 3ztg_A E3 ubiquitin-protein li 56.9 5.5 0.00019 35.3 2.5 48 34-87 13-61 (92)
76 3d00_A Tungsten formylmethanof 54.7 3.3 0.00011 42.9 0.8 26 32-69 161-186 (191)
77 4ap4_A E3 ubiquitin ligase RNF 50.5 6.4 0.00022 36.6 2.0 55 32-88 70-125 (133)
78 1xwh_A Autoimmune regulator; P 49.5 5.5 0.00019 34.0 1.2 59 28-94 2-63 (66)
79 2vrw_B P95VAV, VAV1, proto-onc 48.9 7.6 0.00026 43.7 2.6 35 32-69 355-390 (406)
80 3ky9_A Proto-oncogene VAV; cal 48.5 7.8 0.00027 46.0 2.8 36 32-70 527-563 (587)
81 3nw0_A Non-structural maintena 47.4 9.7 0.00033 40.5 3.0 49 34-88 180-229 (238)
82 3knv_A TNF receptor-associated 46.9 5.8 0.0002 38.7 1.1 46 34-86 31-76 (141)
83 1bor_A Transcription factor PM 46.8 16 0.00056 29.6 3.7 45 34-89 6-50 (56)
84 4ap4_A E3 ubiquitin ligase RNF 46.3 5.7 0.0002 37.0 0.9 55 33-89 6-61 (133)
85 3dpl_R Ring-box protein 1; ubi 46.1 12 0.00041 34.9 3.1 54 33-87 36-100 (106)
86 2y1n_A E3 ubiquitin-protein li 46.0 9.3 0.00032 43.6 2.7 48 35-89 333-380 (389)
87 2kdx_A HYPA, hydrogenase/ureas 45.4 2.9 0.0001 39.7 -1.2 31 52-89 72-103 (119)
88 2ea5_A Cell growth regulator w 45.1 19 0.00067 30.6 4.0 45 32-88 13-58 (68)
89 2ecj_A Tripartite motif-contai 43.3 34 0.0011 27.1 5.0 43 33-82 14-58 (58)
90 2vje_A E3 ubiquitin-protein li 42.7 9 0.00031 32.2 1.5 49 31-87 5-56 (64)
91 2ku3_A Bromodomain-containing 42.4 7.4 0.00025 34.0 0.9 57 27-85 9-66 (71)
92 2k16_A Transcription initiatio 41.7 8.1 0.00028 33.6 1.1 53 33-89 17-72 (75)
93 4g9i_A Hydrogenase maturation 41.3 7.8 0.00027 48.0 1.2 59 31-89 103-191 (772)
94 1m3v_A FLIN4, fusion of the LI 39.8 20 0.00067 33.7 3.6 23 62-86 56-79 (122)
95 2js4_A UPF0434 protein BB2007; 38.8 2.4 8.1E-05 37.2 -2.8 42 53-99 8-49 (70)
96 3a43_A HYPD, hydrogenase nicke 38.6 4.2 0.00014 39.9 -1.4 14 76-89 107-120 (139)
97 2ecg_A Baculoviral IAP repeat- 38.5 14 0.00046 31.8 2.0 43 34-88 25-68 (75)
98 1tot_A CREB-binding protein; z 37.0 11 0.00036 31.1 1.0 32 34-71 6-38 (52)
99 2xjy_A Rhombotin-2; oncoprotei 36.1 18 0.0006 34.1 2.6 45 36-86 31-76 (131)
100 1m4f_A Hepcidin; strand-loop-s 34.6 2.9 0.0001 30.0 -2.3 23 60-84 3-25 (26)
101 2hf1_A Tetraacyldisaccharide-1 34.3 3.1 0.00011 36.3 -2.7 42 53-99 8-49 (68)
102 3v43_A Histone acetyltransfera 34.1 25 0.00084 33.0 3.2 51 34-84 5-63 (112)
103 1wim_A KIAA0161 protein; ring 34.0 17 0.0006 32.4 2.1 50 33-86 4-62 (94)
104 1twf_L ABC10-alpha, DNA-direct 33.9 15 0.00052 32.1 1.6 25 35-61 29-53 (70)
105 2l5u_A Chromodomain-helicase-D 33.5 20 0.00067 30.2 2.2 47 31-84 8-57 (61)
106 2gai_A DNA topoisomerase I; zi 33.0 9.8 0.00033 46.0 0.3 45 36-85 574-621 (633)
107 2yu4_A E3 SUMO-protein ligase 32.4 22 0.00076 31.9 2.5 46 34-85 7-59 (94)
108 2cup_A Skeletal muscle LIM-pro 32.2 21 0.00073 31.9 2.4 22 62-86 55-76 (101)
109 2gmg_A Hypothetical protein PF 32.0 11 0.00038 35.5 0.4 25 55-85 69-93 (105)
110 2co8_A NEDD9 interacting prote 31.8 31 0.0011 30.1 3.3 62 29-93 10-79 (82)
111 2jtn_A LIM domain-binding prot 31.7 45 0.0015 33.3 4.9 52 31-85 57-128 (182)
112 3ttc_A HYPF, transcriptional r 31.6 14 0.00047 45.0 1.2 56 32-87 15-100 (657)
113 2d8y_A Eplin protein; LIM doma 28.9 55 0.0019 28.8 4.5 38 26-63 7-52 (91)
114 2jny_A Uncharacterized BCR; st 28.8 5.7 0.0002 34.5 -2.0 43 53-100 10-52 (67)
115 2lri_C Autoimmune regulator; Z 28.8 23 0.0008 30.4 1.9 46 32-84 10-58 (66)
116 2jr6_A UPF0434 protein NMA0874 28.7 5.5 0.00019 34.7 -2.1 40 62-101 12-51 (68)
117 2ct0_A Non-SMC element 1 homol 28.5 45 0.0015 29.3 3.7 48 34-87 15-63 (74)
118 3htk_C E3 SUMO-protein ligase 28.2 29 0.001 37.6 2.9 51 32-88 179-232 (267)
119 1rut_X Flinc4, fusion protein 27.7 32 0.0011 34.6 3.0 23 62-86 56-79 (188)
120 1mm2_A MI2-beta; PHD, zinc fin 27.4 35 0.0012 28.6 2.7 47 32-85 7-56 (61)
121 2l43_A N-teminal domain from h 27.0 21 0.00072 32.3 1.3 54 31-86 22-76 (88)
122 1x61_A Thyroid receptor intera 26.8 53 0.0018 27.4 3.8 12 34-45 5-16 (72)
123 2vje_B MDM4 protein; proto-onc 26.1 24 0.00081 29.4 1.4 47 34-88 7-56 (63)
124 1w4r_A Thymidine kinase; type 25.2 17 0.0006 37.6 0.5 35 35-69 152-191 (195)
125 1we9_A PHD finger family prote 25.1 22 0.00074 29.8 1.0 53 33-88 5-61 (64)
126 2dj7_A Actin-binding LIM prote 24.8 31 0.0011 30.0 2.0 53 26-81 7-67 (80)
127 3t6p_A Baculoviral IAP repeat- 24.7 28 0.00094 39.1 2.0 43 34-88 295-338 (345)
128 2cor_A Pinch protein; LIM doma 24.6 43 0.0015 28.9 2.9 54 29-88 10-70 (79)
129 2orw_A Thymidine kinase; TMTK, 24.5 23 0.00078 35.6 1.2 35 35-69 138-178 (184)
130 2pk7_A Uncharacterized protein 24.4 5.3 0.00018 34.9 -3.0 33 68-100 18-50 (69)
131 4a0k_B E3 ubiquitin-protein li 23.9 19 0.00066 34.3 0.5 54 34-88 48-112 (117)
132 2xqn_T Testin, TESS; metal-bin 23.0 35 0.0012 31.9 2.1 24 60-86 50-73 (126)
133 3lqh_A Histone-lysine N-methyl 23.0 30 0.001 35.5 1.7 54 33-86 1-64 (183)
134 2e72_A POGO transposable eleme 22.3 25 0.00084 28.8 0.7 15 75-89 11-25 (49)
135 1f62_A Transcription factor WS 22.1 30 0.001 27.7 1.2 45 36-84 2-49 (51)
136 2puy_A PHD finger protein 21A; 21.7 20 0.00068 29.9 0.1 49 33-88 4-55 (60)
137 1wge_A Hypothetical protein 26 21.6 28 0.00096 31.5 1.0 28 35-63 31-62 (83)
138 1dl6_A Transcription factor II 21.5 78 0.0027 26.4 3.7 13 74-86 28-40 (58)
139 1a7i_A QCRP2 (LIM1); LIM domai 21.3 36 0.0012 29.3 1.6 12 34-45 7-18 (81)
140 2jr7_A DPH3 homolog; DESR1, CS 20.8 22 0.00074 32.6 0.1 28 35-63 24-55 (89)
141 1x4l_A Skeletal muscle LIM-pro 20.5 69 0.0024 26.7 3.3 13 33-45 4-16 (72)
142 1yop_A KTI11P; zinc finger, me 20.5 25 0.00085 31.8 0.4 28 35-63 24-55 (83)
143 3e2i_A Thymidine kinase; Zn-bi 20.3 9 0.00031 40.5 -2.9 36 35-70 163-209 (219)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6e-51 Score=500.66 Aligned_cols=491 Identities=23% Similarity=0.365 Sum_probs=375.0
Q ss_pred hHH-HHHHHHHHHHHHHHHHhhcCccc-----hHHHHHHHHHHHHHHHHHHHHhhcCccccccccchhhhhhhhhccCCC
Q 039060 252 YRM-VIVARLVILAFFFRYRILNPVHD-----AIGLWLISVICEIWFAISWILDQFPKWFPIDRETYLDRLSFRYEREGE 325 (1040)
Q Consensus 252 yR~-~~~~~l~~l~~~l~wR~~~~~~~-----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~ 325 (1040)
.|+ ++++.+++.++|++||++.+++. ++++|++++++|+++.+.|++..+..+.|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 354 45666667789999999987652 3567888999999999999999999999998875432 13
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
++++|.|+|+||+|| |++.++++||.|+++++||.++++|+|+|||+++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 567999999999998 999999999999999999999999999999999865431
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
.+|+.+++..+ .+++ ++.++++.
T Consensus 190 ----------------~d~~i~~~~~~---~~~~----l~~~~~~~---------------------------------- 212 (802)
T 4hg6_A 190 ----------------PDPELAQKAQE---RRRE----LQQLCREL---------------------------------- 212 (802)
T ss_dssp ----------------SSHHHHHHHHH---HHHH----HHHHHHHH----------------------------------
T ss_pred ----------------CCHHHHHHHHh---hhHH----HHHHHHhc----------------------------------
Confidence 11222222211 1122 22232210
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGR 564 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~ 564 (1040)
++.|+.|++ ++++||||+|.+++. ++++||+++|||++ +.|++|++++.+| .||
T Consensus 213 ------------~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp---- 267 (802)
T 4hg6_A 213 ------------GVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP---- 267 (802)
T ss_dssp ------------TCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----
T ss_pred ------------CcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----
Confidence 268899887 677899999999997 68999999999999 5899999999998 588
Q ss_pred ceEEEecCccccCCCch-------hhhhhhhhhhhhhhccccccCCCccccccccchhhhhhcCCCCCCCCCCCCCccCC
Q 039060 565 KVCYVQFPQRFDGIDRH-------DRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCD 637 (1040)
Q Consensus 565 ~va~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~gldg~qgp~yvGTGcvfRR~ALyG~~p~~~~~~~~~~~~~ 637 (1040)
++++||+|+.+.|.++. .++.+++..||....++.+.+++++++|++++|||+++
T Consensus 268 ~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------ 329 (802)
T 4hg6_A 268 DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------ 329 (802)
T ss_dssp SCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH------------------
T ss_pred CeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH------------------
Confidence 88999999999997743 33456678899999999999999999999999999887
Q ss_pred CCCCCCcccccccccccCCccccCCCCChhhHHHhhhhhHhhhcCcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccc
Q 039060 638 CCPCFGRRKKKYSKHSANGENANLGGMDDDKELLMSQMNFEKKFGQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISC 717 (1040)
Q Consensus 638 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC 717 (1040)
+++||+++
T Consensus 330 -------------------------------------------------------~~vGgf~~----------------- 337 (802)
T 4hg6_A 330 -------------------------------------------------------DEAGGFAG----------------- 337 (802)
T ss_dssp -------------------------------------------------------HHHTTCCC-----------------
T ss_pred -------------------------------------------------------HHcCCcCC-----------------
Confidence 45677654
Q ss_pred cccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcccccccCCCCHHHHHHHHHHhhccchhHHhhcCCccc
Q 039060 718 GYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPVW 797 (1040)
Q Consensus 718 ~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~af~G~aP~tl~~~l~QR~RWA~G~lQil~sk~~PL~ 797 (1040)
++++||.+++++++++||+++|+++.. +++.+|+|+.++++||.||++|.+|+++.+ +|++
T Consensus 338 ----------------~~~~ED~~l~~rl~~~G~ri~~~~~~~--~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~~-~pl~ 398 (802)
T 4hg6_A 338 ----------------ETITEDAETALEIHSRGWKSLYIDRAM--IAGLQPETFASFIQQRGRWATGMMQMLLLK-NPLF 398 (802)
T ss_dssp ----------------SSSSHHHHHHHHHHTTTCCEEECCCCC--EEECCCCSHHHHHHHHHHHHHHHHHHHHHS-CTTS
T ss_pred ----------------CCcchHHHHHHHHHHcCCeEEEecCCE--EEecCCCCHHHHHHHHHHHHccHHHHHHHh-Cccc
Confidence 578899999999999999999997644 589999999999999999999999999854 6776
Q ss_pred ccccCCCCCccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHH-HHHHHHHHHhhhcCcc
Q 039060 798 YGYKGGNLRFLERFAYVNTTIYPFTSIPLLAYCVLPAICLLTDKFIMPEISTFASLFFIALFI-SIFTTGILELRWSGVS 876 (1040)
Q Consensus 798 ~g~~~~~L~l~QRL~Yl~~~ly~l~slp~liy~llP~l~Ll~G~~iip~~s~~~~~~fi~lfl-s~~~~~lLe~rwsG~s 876 (1040)
.+++++.||+.|+...++++.+++.++++++|+++++++..+++.....++.+++.+++ .+.+...+ +.+..
T Consensus 399 ----~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~~---~~~~r 471 (802)
T 4hg6_A 399 ----RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNAL---FARQR 471 (802)
T ss_dssp ----CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHHHH---HTTTS
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHHHH---hcCcH
Confidence 45799999999999999999999999999999999999998876543332222222221 22222221 11111
Q ss_pred chhhhcccchhhHHHHHHHHHHHHHHHHH-HHcCCCCCeEeccCCCCccccccceeeeccccchHHHHHHHHHHHHHHHH
Q 039060 877 IEEWWRNEQFWVIGGISAHLFAVVQGLLK-ILAGIDTNFTVTSKATDEDEEFGELYSFKWTTLLIPPTTVLIINLVGVVA 955 (1040)
Q Consensus 877 i~~wWrne~~W~I~~~sa~lfav~~allk-vL~g~~~~F~VTpK~~~~~~~~~~ly~f~ws~L~iP~~tLlllnliaiv~ 955 (1040)
..|| ++.|+.+.+ +..+.+++. .+++++.+|+||+|+...+..+ + + .++.|+++++++|++++++
T Consensus 472 -~~~~-~~l~~~~~~-----~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~~-----~-~-~~~~p~~~~~~l~~~~~~~ 537 (802)
T 4hg6_A 472 -WPLV-SEVYEVAQA-----PYLARAIVTTLLRPRSARFAVTAKDETLSENY-----I-S-PIYRPLLFTFLLCLSGVLA 537 (802)
T ss_dssp -CTTH-HHHHHHHHH-----HHHHHHHHHHHHSTTCCCCCCCCCCCCCSSCC-----B-C-TTCHHHHHHHHHHHHHHHH
T ss_pred -HHHH-HHHHHHHHH-----HHHHHHHHHHHhCCCCCcceECCCCccccccc-----h-h-hHHHHHHHHHHHHHHHHHH
Confidence 1233 233332221 112344443 3456889999999998643322 1 2 4788999999999999999
Q ss_pred HHHHhHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 039060 956 GISDAINNGYQSWGPLFGKLFFAFWVILHLYPFLKGLM 993 (1040)
Q Consensus 956 Gi~~~i~~g~~~w~~l~g~l~~~~Wvi~~l~Pfl~gL~ 993 (1040)
|+++...... +..+.+++++|+++|++.+.-++.
T Consensus 538 ~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 538 TLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9998875432 356678999999999999888773
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=7e-45 Score=325.95 Aligned_cols=84 Identities=87% Similarity=1.578 Sum_probs=81.9
Q ss_pred CCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCCCccccc
Q 039060 26 PKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDEDEEDID 105 (1040)
Q Consensus 26 ~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~e~~~~ 105 (1040)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||+|+|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhc
Q 039060 106 DIEH 109 (1040)
Q Consensus 106 d~~~ 109 (1040)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 9874
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.61 E-value=4.8e-15 Score=176.20 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=99.0
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
+...|.|+|+||||| |+ ..+.+||.|+++++||. .++|+|+|||+++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 455799999999998 74 89999999999999986 799999999998743221100
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGR 564 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1040)
.-+++.|+.+++ +.+.||+|+|.+++. +.++||+++|+|+++ .|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhcCC----
Confidence 002377787654 345799999999996 589999999999995 8999999999885 66
Q ss_pred ceEEEecCccccCC
Q 039060 565 KVCYVQFPQRFDGI 578 (1040)
Q Consensus 565 ~va~VQ~PQ~F~ni 578 (1040)
.++.|+..+.+.+.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred ceEEEEeeeeccCc
Confidence 78888877666543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.55 E-value=7.1e-14 Score=160.86 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=92.2
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChh-hHHHHHHHHHHhhhhhhhhhhhcCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASII-TFDALAETAEFARKWVPFCKKFAIEP 404 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~l-t~~al~Eaa~fA~~WvPFCkk~~iep 404 (1040)
++.+|.|+|+||+|| |+...+.+||.|++++.||...++|+|+|||+++- |.+.+.+
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~------------------- 82 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLES------------------- 82 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHH-------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHH-------------------
Confidence 457999999999999 87789999999999999996668999999999862 3322211
Q ss_pred CCcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeecc
Q 039060 405 RAPEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLG 484 (1040)
Q Consensus 405 R~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~ 484 (1040)
+++
T Consensus 83 ------------------------------------------~~~----------------------------------- 85 (472)
T 1xhb_A 83 ------------------------------------------YVK----------------------------------- 85 (472)
T ss_dssp ------------------------------------------HHH-----------------------------------
T ss_pred ------------------------------------------HHH-----------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCCcC-cEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 039060 485 QSGGHDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DP 560 (1040)
Q Consensus 485 ~~g~~d~~~~~lP-~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp 560 (1040)
.+| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. .+|++|.+++..+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 012 477787776544 99999999996 68999999999998 58999999999875 55
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.54 E-value=4.3e-14 Score=146.04 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCc
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAP 407 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~P 407 (1040)
..|.|+|+||+|| ++ ..+.++|.|++++.|| .++|+|+|||+++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 4689999999999 65 6889999999999998 699999999998855442221
Q ss_pred ccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCC
Q 039060 408 EMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSG 487 (1040)
Q Consensus 408 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g 487 (1040)
++++
T Consensus 55 ---------------------------------------~~~~------------------------------------- 58 (240)
T 3bcv_A 55 ---------------------------------------YAAQ------------------------------------- 58 (240)
T ss_dssp ---------------------------------------HHHH-------------------------------------
T ss_pred ---------------------------------------HHhh-------------------------------------
Confidence 1101
Q ss_pred CCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 488 GHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 488 ~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
.|++.|+.. + ...+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 --------~~~i~~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 123666653 2 23599999999996 68999999999999 5899999999988753
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.53 E-value=6.2e-14 Score=166.38 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=91.0
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhh-HHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIIT-FDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt-~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
+.+|.|+|+||+|| |+...+.+||.|+++..||...++|+|+|||+++-| .+.|.+
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~-------------------- 165 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLED-------------------- 165 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHH--------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHH--------------------
Confidence 56899999999999 877899999999999999965569999999998754 221111
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
+++
T Consensus 166 -----------------------------------------~~~------------------------------------ 168 (570)
T 2d7i_A 166 -----------------------------------------YMA------------------------------------ 168 (570)
T ss_dssp -----------------------------------------HHT------------------------------------
T ss_pred -----------------------------------------HHH------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMD 559 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~D 559 (1040)
..|++.++..+++.| +++|+|.+++. +.|+||+.||+|.++ +|++|.+++..+.+
T Consensus 169 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIAR 223 (570)
T ss_dssp ---------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHH
T ss_pred ---------hCCeEEEEECCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHh
Confidence 113477787766444 99999999996 589999999999995 99999999998854
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.51 E-value=8.5e-15 Score=153.00 Aligned_cols=124 Identities=14% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCccc
Q 039060 330 APVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPEM 409 (1040)
Q Consensus 330 p~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe~ 409 (1040)
|.|+|+||+|| ++ ..+.+||.|++++.|| .++|+|+|||+++-|.+.+.+ +
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~--------------~--------- 51 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP--------------F--------- 51 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG--------------G---------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH--------------H---------
Confidence 68999999999 65 7899999999999999 799999999998744331110 0
Q ss_pred ccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCCC
Q 039060 410 YFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGGH 489 (1040)
Q Consensus 410 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~~ 489 (1040)
+ .
T Consensus 52 --------------------------------------~-----------------------------------~----- 53 (255)
T 1qg8_A 52 --------------------------------------L-----------------------------------N----- 53 (255)
T ss_dssp --------------------------------------G-----------------------------------G-----
T ss_pred --------------------------------------h-----------------------------------h-----
Confidence 0 0
Q ss_pred CCCCCCcCcEEEEecccCCCC----CCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 039060 490 DAEGNELPRLVYVSREKRPGF----QHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-DPQTGR 564 (1040)
Q Consensus 490 d~~~~~lP~lvYvsRekRpg~----~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-Dp~~g~ 564 (1040)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.++ .|++|.+++..|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----
Confidence 023677776510 00 123599999999986 689999999999995 8999999999885 66
Q ss_pred ceEEEecCcccc
Q 039060 565 KVCYVQFPQRFD 576 (1040)
Q Consensus 565 ~va~VQ~PQ~F~ 576 (1040)
++++|.....+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 677887766554
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.48 E-value=1.1e-13 Score=161.08 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=90.4
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCC
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPR 405 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR 405 (1040)
+..+|.|+|+||+|| |+...+.+||.|+++..||...++|+|+|||+++-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999999 8755899999999999999656799999999987432100
Q ss_pred CcccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccC
Q 039060 406 APEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQ 485 (1040)
Q Consensus 406 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~ 485 (1040)
+ +
T Consensus 117 -----------------------------------------~-~------------------------------------ 118 (501)
T 2ffu_A 117 -----------------------------------------L-G------------------------------------ 118 (501)
T ss_dssp -----------------------------------------G-G------------------------------------
T ss_pred -----------------------------------------H-h------------------------------------
Confidence 0 0
Q ss_pred CCCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 486 SGGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 486 ~g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
..|++.|+..+++.| +++|+|.+++. +.|+||+.+|+|..+ .|++|.+++..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCEC-NEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCcC-----HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhC
Confidence 113477887776444 99999999996 689999999999995 899999999988643
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.43 E-value=4.6e-13 Score=159.18 Aligned_cols=124 Identities=23% Similarity=0.292 Sum_probs=95.5
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 039060 327 NMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRA 406 (1040)
Q Consensus 327 ~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~ 406 (1040)
...|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+|||+++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH---------------------
Confidence 45789999999999 54 6889999999999998 689999999999755442211
Q ss_pred cccccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCC
Q 039060 407 PEMYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQS 486 (1040)
Q Consensus 407 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~ 486 (1040)
+.+
T Consensus 425 ----------------------------------------~~~------------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HYA------------------------------------- 427 (625)
T ss_dssp ----------------------------------------HHT-------------------------------------
T ss_pred ----------------------------------------HHh-------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCc
Q 039060 487 GGHDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFL-MDPQTGRK 565 (1040)
Q Consensus 487 g~~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff-~Dp~~g~~ 565 (1040)
..|++.+++ ++ ...+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..| .+| +
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHhCC----C
Confidence 012466665 33 23599999999996 689999999999995 999999999877 577 6
Q ss_pred eEEEecCccccC
Q 039060 566 VCYVQFPQRFDG 577 (1040)
Q Consensus 566 va~VQ~PQ~F~n 577 (1040)
+++|.+...+.+
T Consensus 485 ~~~v~~~~~~~~ 496 (625)
T 2z86_A 485 LACVYTTNRNID 496 (625)
T ss_dssp CSEEEEEEEEEC
T ss_pred eeEEEeeeEEEC
Confidence 778877665544
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.13 E-value=2.4e-10 Score=126.14 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=42.6
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHH
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
.-|.|.|+||+|| |+ ..+..||.|++++.|| ...+|+|+|||+++-|.+
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~-~~~eiivVDdgS~D~t~~ 94 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDG-LVDELIVLDSGSTDDTEI 94 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTT-TBSEEEEEECSCCSSHHH
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCC-CCcEEEEEeCCCCchHHH
Confidence 4689999999999 65 6789999999999998 358999999999986655
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.11 E-value=7.5e-12 Score=152.32 Aligned_cols=111 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhhHHHHHHHHHHhhhhhhhhhhhcCCCCCcc
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIITFDALAETAEFARKWVPFCKKFAIEPRAPE 408 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt~~al~Eaa~fA~~WvPFCkk~~iepR~Pe 408 (1040)
.|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+|||+++-|.+.+.+. + ++
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~---~-------~~--------- 55 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA---I-------KD--------- 55 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH---H-------Hh---------
Confidence 378999999999 65 7889999999999999 7899999999987554422211 0 00
Q ss_pred cccccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCCCCCCCCCCCCccceeeeccCCCC
Q 039060 409 MYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVARASKIPPEGWIMPDGTPWPGNNTRDHPGMIQVFLGQSGG 488 (1040)
Q Consensus 409 ~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~k~~~vp~e~w~m~dg~~w~g~~~rdHp~iiqv~l~~~g~ 488 (1040)
|+
T Consensus 56 ------------------------------------------------------------------~~------------ 57 (729)
T 3l7i_A 56 ------------------------------------------------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------------------------CC------------
Confidence 00
Q ss_pred CCCCCCCcCcEEEEecccCCCCCCCCchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 039060 489 HDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLMDP 560 (1040)
Q Consensus 489 ~d~~~~~lP~lvYvsRekRpg~~hh~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~Dp 560 (1040)
+++.|+..++. ..+++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..+.++
T Consensus 58 --------~~i~~i~~~~n-----~G~~~arN~gi~~----A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 --------KNIRFIDLDEN-----SGHAHARNIALEE----VETPYFMFLDADDEL-ASYAITFYLEKFNNT 111 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCC-----CCHHHHHHHHHHh----ccCCEEEEECCCCCC-ChhHHHHHHHHhcCC
Confidence 13555555542 3489999999985 689999999999995 899999999988754
No 12
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.10 E-value=2.6e-10 Score=137.95 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=41.0
Q ss_pred CCCCCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCe-EEEEecCCCCh
Q 039060 326 PNMLAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKI-SCYISDDGASI 377 (1040)
Q Consensus 326 ~~~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl-~vyv~DDG~~~ 377 (1040)
+..-|.|.|+||||| ++ ..+.++|.|++++.|+.++. +|+|+|||+++
T Consensus 176 ~~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 176 APGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp CCSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 345689999999998 54 78999999999999966555 89999999975
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.85 E-value=2.5e-09 Score=117.12 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=55.6
Q ss_pred CcchHHHhhhhhhhCCCCCCCCchhHHHHHHHhccccccccCccccccCcccccccchHHHHHHHHhCCcEEEEeCCCcc
Q 039060 682 GQSAIFVTSTLMEQGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRA 761 (1040)
Q Consensus 682 G~s~~f~~S~l~e~GG~~~~~~~~~~~~~a~~v~sC~YE~~T~WG~evGW~ygsvTED~~tg~rLh~~GWrsvY~~~~~~ 761 (1040)
|....++++++.++|||++. | .|| -.||.++..|++.+||++.+.++...
T Consensus 176 G~~~~~rr~~f~~vgGFde~-----------------~---------~g~----g~ED~Dl~~Rl~~~G~~i~~~~~~~~ 225 (287)
T 2fy7_A 176 GGVSALSKQQFLTINGFPNN-----------------Y---------WGW----GGEDDDIFNRLVFRGMSISRPNAVVG 225 (287)
T ss_dssp CSEEEEEHHHHHHTTSCCSC-----------------C---------SSC----SCHHHHHHHHHHHTTCCCBCCCTTTC
T ss_pred eeEEEEEHHHHHHcCCCCcc-----------------c---------ccc----ccchHHHHHHHHHcCCeEEecCcccc
Confidence 44455667777899999762 1 122 24999999999999998874432111
Q ss_pred cc----------cccCCCCHHHHHHHHHHhhccchhHHh
Q 039060 762 AF----------KGSAPINLSDRLNQVLRWALGSVEIFF 790 (1040)
Q Consensus 762 af----------~G~aP~tl~~~l~QR~RWA~G~lQil~ 790 (1040)
.+ ....|+.+..+.+||.||+++.+..+.
T Consensus 226 ~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~~ 264 (287)
T 2fy7_A 226 TTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLT 264 (287)
T ss_dssp EEEECC---------CCCCCCCHHHHHHHTTTSSGGGCC
T ss_pred eeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccCc
Confidence 01 235789999999999999999998873
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.52 E-value=2.6e-07 Score=105.20 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=40.6
Q ss_pred CCCCeEEEEecCCCCCCChHHHHHHHHHHHc--CCCCCCCeEEEEecCCCChhhHH
Q 039060 328 MLAPVDIFVSTVDPLKEPPLVTANTVLSILA--MDYPVDKISCYISDDGASIITFD 381 (1040)
Q Consensus 328 ~lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la--~dYP~~kl~vyv~DDG~~~lt~~ 381 (1040)
..|.|.|+||+|| |. ..+..+|.++++ .+||. ..+|+|+|||+++-|.+
T Consensus 92 ~~p~vSVVIP~yN---e~-~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~ 142 (387)
T 3f1y_A 92 LGLTVSAVLPSRN---VA-DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAG 142 (387)
T ss_dssp HTCCEEEEEEESS---CT-TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHH
T ss_pred CCCeEEEEEEcCC---CH-HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHH
Confidence 3688999999999 75 678899999987 47774 47999999999986655
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=98.13 E-value=1.9e-05 Score=83.74 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=38.7
Q ss_pred chhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc-----CCCCCCceEEE
Q 039060 515 KAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM-----DPQTGRKVCYV 569 (1040)
Q Consensus 515 KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~-----Dp~~g~~va~V 569 (1040)
.|.|+|.+++. +.|+||+.||+|.++ .+++|.+.+.++. || +++.|
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~v 112 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVA 112 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEE
Confidence 37889999986 689999999999996 8899999998886 37 66655
No 16
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=96.83 E-value=0.0023 Score=71.97 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=38.3
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCCh
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASI 377 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~ 377 (1040)
|+.+-|+|+||| -| . +++|+.|++++..+.++..++|+|||+..
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 456789999998 76 6 99999999999977778899999999864
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=96.74 E-value=0.0055 Score=70.09 Aligned_cols=42 Identities=14% Similarity=-0.026 Sum_probs=34.5
Q ss_pred CCchhhhHHHH----HHhcCCCCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 039060 513 HKKAGAMNALV----RVSGVLTNAPFMLNLDCDHYVNNSKAVRESMCFLM 558 (1040)
Q Consensus 513 h~KAGALNall----rvSav~tngp~Il~lDcD~~~~~p~~Lr~amcff~ 558 (1040)
..|++|+|+++ +. ++|++|+.+|||..-.+|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEE----TQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46999999999 54 68999999999985237899999887664
No 18
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.61 E-value=0.002 Score=57.41 Aligned_cols=53 Identities=30% Similarity=0.910 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
....|.||-+.+.. +.-.|.+| .||.-.|+.|+..-.++++..||.|+++|..
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34589999997632 33458889 9999999999987777888999999999965
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=96.13 E-value=0.019 Score=65.56 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=29.4
Q ss_pred CchhhhHHHHHHhcCCCCCCEEEEecCCCCCCchHHHHHHH
Q 039060 514 KKAGAMNALVRVSGVLTNAPFMLNLDCDHYVNNSKAVRESM 554 (1040)
Q Consensus 514 ~KAGALNallrvSav~tngp~Il~lDcD~~~~~p~~Lr~am 554 (1040)
.|..||=+++.++. ..++++|+.+|||-+ .|..+.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHH
Confidence 59999999987631 117999999999997 477776544
No 20
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=96.05 E-value=0.0073 Score=68.08 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=34.7
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEecCCCChhh
Q 039060 329 LAPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASIIT 379 (1040)
Q Consensus 329 lp~VDV~V~t~nP~kEp~~~v~~Tv~s~la~dYP~~kl~vyv~DDG~~~lt 379 (1040)
+..+.|+||+|| |.. +++.++++.-|. ...|+|+|||+.+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 567999999999 884 468888888776 688999999997754
No 21
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.46 E-value=0.33 Score=41.01 Aligned_cols=51 Identities=31% Similarity=0.630 Sum_probs=36.9
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCC---CcccchhHHHHh-hCCCCCCCChhhhh
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGF---PVCRPCYEYERR-EGTQVCPQCKTRYK 87 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~F---pvCRpCyeyerk-eG~~~CpqCkt~Yk 87 (1040)
..+..|.||-++ .++++..+| .|.= -|=+.|.+-=.+ .|+..||.||++|+
T Consensus 4 ~~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356689999876 234577888 6643 455678866555 47899999999996
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.11 E-value=0.44 Score=39.78 Aligned_cols=55 Identities=29% Similarity=0.727 Sum_probs=39.5
Q ss_pred CCCcccccccccccccC-CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTV-DGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~-~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.....|.||-+...-.. .++..+.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999865443 34444443 78889999999655554 6899999998753
No 23
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.05 E-value=0.62 Score=41.56 Aligned_cols=56 Identities=23% Similarity=0.513 Sum_probs=40.6
Q ss_pred CCCCCcccccccccccccCCCCeeecCCCCC---CCcccchhHHHHhh-CCCCCCCChhhhhc
Q 039060 30 KNLDAQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCYEYERRE-GTQVCPQCKTRYKR 88 (1040)
Q Consensus 30 ~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~---FpvCRpCyeyerke-G~~~CpqCkt~Ykr 88 (1040)
.......|.||-++. ++++.+..+| .|. --+.+.|-+-=.+. ++..||.|++.|.-
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 344567999998874 3445567778 563 67999999765544 45799999999964
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.21 E-value=0.49 Score=39.54 Aligned_cols=53 Identities=23% Similarity=0.521 Sum_probs=37.5
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+++..+.. ..++.= .||--.|+.|.+--..+++..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4589999884333221 122322 6899999999976656778899999999864
No 25
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.32 E-value=0.36 Score=43.05 Aligned_cols=62 Identities=23% Similarity=0.490 Sum_probs=45.7
Q ss_pred cccCCceEEEEecCCCCCCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHh
Q 039060 10 GSHNRNELVVIHNHEEPKPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR 73 (1040)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk 73 (1040)
||.-.|||..|+.-+...+..+-+...|..|+...|+- ++--+.|+.|...||+.|-.+..+
T Consensus 1 ~~~~~~eL~elrrkgak~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGAKRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCCCCSCSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CchhHHHHHHHHHccccCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 45558898877764433333456677999999999876 444578999999999999876543
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.19 E-value=0.41 Score=41.38 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
..-.|.||.+.. . ++.+. .||.-.|+.|.+--.+.|+..||.|++++.
T Consensus 7 ~~~~C~IC~~~~-~----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELM-K----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCC-S----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccc-c----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 345899998864 2 34332 699999999998888888999999999874
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.59 E-value=1.8 Score=37.20 Aligned_cols=53 Identities=17% Similarity=0.415 Sum_probs=37.0
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
.....|.||-+.+.. ++..+.- .|+--.|+.|.+--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 345699999998632 3333222 4788899999965444 447999999998654
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.63 E-value=0.3 Score=40.22 Aligned_cols=53 Identities=30% Similarity=0.759 Sum_probs=38.6
Q ss_pred CcccccccccccccC-CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTV-DGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~-~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865433 34444444 78889999999755444 6899999998854
No 29
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=82.88 E-value=0.59 Score=46.43 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=38.3
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
..|.||-+... ++ |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999988753 23 33347899999999988888888999999999853
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.40 E-value=1.2 Score=35.55 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=35.1
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
+...|.||-++... |+..+....|+--.|+.|.+--. ..+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 34589999998633 44334443578889999995433 4478999999765
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.40 E-value=1.2 Score=35.58 Aligned_cols=50 Identities=30% Similarity=0.617 Sum_probs=35.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
....|.||-+++.. .++. +..-.|+--.|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT--SRVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT--TTSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcC--CCcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 45689999998642 2222 2333578899999997666655 8999999765
No 32
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=81.38 E-value=1.4 Score=46.60 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.9
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
...-.|.||.+-. -++.+. .||.-.||.|-+--.++++..||.|+++..
T Consensus 206 ~~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3455899998754 345443 489999999998888877777999999884
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=81.14 E-value=0.68 Score=39.01 Aligned_cols=55 Identities=29% Similarity=0.727 Sum_probs=40.1
Q ss_pred CCCcccccccccccccC-CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTV-DGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~-~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.....|.||-+...... +|+..+.- .|+--.|+.|.+--.+.. ..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcC-CCCCCCCCccCh
Confidence 34568999999875543 45544444 789999999996554444 799999998853
No 34
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.08 E-value=0.86 Score=38.66 Aligned_cols=49 Identities=29% Similarity=0.664 Sum_probs=36.7
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHh--hCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR--EGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk--eG~~~CpqCkt~Ykr 88 (1040)
....|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998753 2322 2 7899999999976655 366799999999854
No 35
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.94 E-value=1 Score=37.69 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=37.5
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
....|.||.+... ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3458999998752 2222 26888899999987777778899999998854
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=79.35 E-value=1.1 Score=42.43 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=36.1
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-.|.||-+..- ++.+ - .||--.|+.|.+--.+.++..||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999998753 3322 2 6899999999977766666799999999854
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=77.81 E-value=1.6 Score=40.32 Aligned_cols=59 Identities=22% Similarity=0.462 Sum_probs=40.6
Q ss_pred CCcccccccccccccC-----------CCCeeecCCCCCCCcccchhHHHHh----hCCCCCCCChhhhhcccC
Q 039060 33 DAQVCEICGDEIGLTV-----------DGDLFVACNECGFPVCRPCYEYERR----EGTQVCPQCKTRYKRLKG 91 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~-----------~G~~fvaC~eC~FpvCRpCyeyerk----eG~~~CpqCkt~Ykr~kg 91 (1040)
....|.||-+++...+ +-...+..-.|+=-.|+.|.+--.+ +.+..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999998864432 1112333446788899999976554 456799999999966543
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.88 E-value=1.3 Score=45.44 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
..-.|.||++-. . ++.+. .||.-.||.|-+--.++++..||.|++++.
T Consensus 105 ~~f~CPI~~elm-~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELM-R----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBC-S----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccC-C----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 344899998753 3 46666 499999999998777765457999999884
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.76 E-value=1.8 Score=37.81 Aligned_cols=53 Identities=23% Similarity=0.454 Sum_probs=37.3
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhC--CCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREG--TQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG--~~~CpqCkt~Ykr 88 (1040)
....|.||-+....+ ....+.- .|+-..|+.|.+--.+.. ...||.|+++++.
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345899999885332 2213333 689999999997665543 6899999998853
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.81 E-value=2.3 Score=36.72 Aligned_cols=49 Identities=24% Similarity=0.810 Sum_probs=35.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh-----CCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-----GTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke-----G~~~CpqCkt~Ykr 88 (1040)
....|.||-+... ++ +.. .|+-..|+.|.+--.+. ++..||.|++++..
T Consensus 18 ~~~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT-----QP-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS-----SC-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC-----Cc-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3458999998862 12 222 58889999999754433 57899999999853
No 41
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.04 E-value=2.3 Score=36.65 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=35.2
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh-----CCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-----GTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke-----G~~~CpqCkt~Ykr 88 (1040)
...|.||-+.... + +.. .|+-..|+.|.+--.+. ++..||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887522 2 223 57889999999765554 47899999998853
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.97 E-value=3.6 Score=34.26 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=34.6
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
...|.||-+... +..... .|+--.|+.|.+--.+ .+..||-|++++...
T Consensus 5 ~~~C~IC~~~~~---~~~~~~---~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS---NYSMAL---PCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC---SCEEET---TTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc---CCcEec---CCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 458999998853 111233 4788899999965444 347999999998654
No 43
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=73.09 E-value=2 Score=39.16 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=37.8
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
-.|.||-+..- + -|.|-.|+--.|+.|..--.+..+..||.|++++.
T Consensus 23 ~~C~IC~~~~~-----~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR-----D-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS-----S-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc-----C-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 48999998863 1 35556899999999998777776689999999984
No 44
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.74 E-value=5.3 Score=33.87 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=35.5
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
...|.||-+..-- +. ....|+--.|+.|.+--.+. +..||.|+++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876521 22 22367888899999766555 68999999998653
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=71.67 E-value=3.2 Score=36.94 Aligned_cols=47 Identities=11% Similarity=-0.035 Sum_probs=35.3
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
..-.|.||++-. . ++.+. .||.-.||.|-+--.++ +..||.|++++.
T Consensus 13 ~~~~CpI~~~~m-~----dPV~~--~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T----DPVRL--PSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S----SEEEC--TTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred hheECcccCchh-c----CCeEC--CCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 345899998643 2 34443 38999999999877664 689999999874
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=71.61 E-value=2.9 Score=35.04 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=36.5
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
.....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34568999998863 23333333 57888899999644444 46799999988553
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=71.16 E-value=1.8 Score=40.06 Aligned_cols=47 Identities=11% Similarity=-0.034 Sum_probs=35.4
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
..-.|.||++-. . ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 28 ~~~~CpI~~~~m-~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM-T----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC-S----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCcc-c----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 345899997643 2 34443 3899999999987766 5789999999873
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=67.48 E-value=1.4 Score=40.94 Aligned_cols=48 Identities=23% Similarity=0.715 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.-.|.||-+..- ++.+- .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 448999998752 23222 6899999999976666778899999999864
No 49
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.65 E-value=2.3 Score=35.74 Aligned_cols=48 Identities=25% Similarity=0.657 Sum_probs=35.1
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
....|.||-+.... ...+ |+--.|+.|.+- .-+.+..||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 34589999887522 4554 577789999954 344789999999998653
No 50
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=66.56 E-value=0.89 Score=45.55 Aligned_cols=51 Identities=24% Similarity=0.507 Sum_probs=42.8
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~ 85 (1040)
+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998776 334689999999999999998888888888878654
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.45 E-value=2.7 Score=36.01 Aligned_cols=52 Identities=15% Similarity=0.439 Sum_probs=36.5
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
....|.||-+++.. ++..+.- .|+--.|+.|.+--.+. +..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 45689999988643 4433332 47888999999655444 57899999887554
No 52
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=66.03 E-value=2.6 Score=39.41 Aligned_cols=49 Identities=27% Similarity=0.785 Sum_probs=35.5
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhccc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLK 90 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~k 90 (1040)
.|.+|+-.|-. .|. .++| .=-.|-.|++.-.+++.+.||.|+.+..|.+
T Consensus 3 fC~~C~~Pi~i--ygR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE--EEE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE--Eee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 57777766532 122 3455 3467999998878899999999999998763
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=65.88 E-value=3.6 Score=37.15 Aligned_cols=48 Identities=19% Similarity=0.419 Sum_probs=34.9
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+... ++.+ ...|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-----IAMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-----SEEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC-----CcCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 348999988752 2322 236899999999965554 45899999998854
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=65.17 E-value=3.6 Score=40.55 Aligned_cols=47 Identities=21% Similarity=0.571 Sum_probs=36.1
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 47999988652 2333 2 6888899999987777777799999999854
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=65.05 E-value=3.1 Score=39.02 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=36.3
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-.|.||.+..- ++ |.. .|+=-.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999997752 23 334 6899999999987777776799999988743
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=64.27 E-value=3.5 Score=37.89 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=34.7
Q ss_pred CcccccccccccccCCCCeeecCCCCC-CCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECG-FPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~-FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
.-.|.||.+- +. ++.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4589999764 33 34443 478 99999999877665 689999999884
No 57
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=64.23 E-value=2.6 Score=43.89 Aligned_cols=29 Identities=31% Similarity=0.710 Sum_probs=22.6
Q ss_pred CCCccccccccccccc----CCCCeeecCCCCCCCcccchhHH
Q 039060 32 LDAQVCEICGDEIGLT----VDGDLFVACNECGFPVCRPCYEY 70 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~----~~G~~fvaC~eC~FpvCRpCyey 70 (1040)
.+.-+|++||+.|+-+ .||+ +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 4466999999998765 3565 789999964
No 58
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=63.58 E-value=2.9 Score=40.95 Aligned_cols=38 Identities=26% Similarity=0.712 Sum_probs=30.5
Q ss_pred CCCCccccccccccccc-CCCCeeecCCCCCCCcccchhHHH
Q 039060 31 NLDAQVCEICGDEIGLT-VDGDLFVACNECGFPVCRPCYEYE 71 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~-~~G~~fvaC~eC~FpvCRpCyeye 71 (1040)
+.+...|.+|+...|+- ..| +.|..|...||+.|-.+-
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 35667999999999754 334 889999999999998653
No 59
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.53 E-value=6.3 Score=33.39 Aligned_cols=52 Identities=23% Similarity=0.518 Sum_probs=36.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
....|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++...
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 35689999998632 3333333 47888999999655444 46899999988543
No 60
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=63.53 E-value=3.4 Score=51.05 Aligned_cols=74 Identities=28% Similarity=0.620 Sum_probs=48.3
Q ss_pred eEEEEecCCC-CCCCCCCCCcccccccccccccCC---CCeeecCCCCC--------------------CCcccchhH-H
Q 039060 16 ELVVIHNHEE-PKPLKNLDAQVCEICGDEIGLTVD---GDLFVACNECG--------------------FPVCRPCYE-Y 70 (1040)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~c~iCg~~vg~~~~---G~~fvaC~eC~--------------------FpvCRpCye-y 70 (1040)
.|.+.++++. ....-..+-.+|.-|=.++---.| +-+|..|..|| ||.|..|.. |
T Consensus 92 ~F~I~~s~~~~~~~~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY 171 (761)
T 3vth_A 92 DFKIVGSKEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREY 171 (761)
T ss_dssp SEEECCCBCCSCCCCCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHH
T ss_pred CceeeecCCCCcccccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHh
Confidence 3444444422 122333556799999999742222 45899999998 999999974 4
Q ss_pred H----Hh--hCCCCCCCChhhhhcc
Q 039060 71 E----RR--EGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 71 e----rk--eG~~~CpqCkt~Ykr~ 89 (1040)
+ || ----+||.|+=++.-.
T Consensus 172 ~dp~~RRfhAqp~aC~~CGP~l~l~ 196 (761)
T 3vth_A 172 HDPHDRRFHAQPVACFDCGPSLSFV 196 (761)
T ss_dssp TCTTSTTTTCTTCCCTTTSCCEEEE
T ss_pred cCcccccccCCCCcCCccCCeeEEe
Confidence 3 33 1225899999887543
No 61
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=62.92 E-value=3.6 Score=36.82 Aligned_cols=49 Identities=24% Similarity=0.606 Sum_probs=35.3
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
....|.||-++.. +|+..+.. .|+=-.|+.|..--. ..+..||-|+.++
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccC
Confidence 4458999998863 35554444 378889999985443 4567999999876
No 62
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.38 E-value=5 Score=36.64 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=33.9
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh--CCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE--GTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke--G~~~CpqCkt~Ykr 88 (1040)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 48999988652 1222 2 68999999999765553 44689999998754
No 63
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.31 E-value=4.9 Score=34.02 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=34.5
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.....|.||-+.... . ... .|+--.|+.|.+--.+. +..||.|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~---~-~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---P-VSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---E-EEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---C-EEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 455689999987521 1 233 47888999999643333 4899999999854
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.17 E-value=9 Score=33.12 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=34.3
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
...|.||-+..- ++.+ -.|+--.|+.|..--.+. +..||.|++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 458999988862 2333 267888899999666544 689999999884
No 65
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.79 E-value=5.3 Score=35.02 Aligned_cols=55 Identities=20% Similarity=0.475 Sum_probs=37.5
Q ss_pred CCccccccccccccc--------CCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLT--------VDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~--------~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
....|.||-+++... .+++..+.-..|+=--|+.|.+-=.+ .++.||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 456799999887542 23443333336888899999854443 35799999998854
No 66
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.26 E-value=7.1 Score=32.05 Aligned_cols=43 Identities=28% Similarity=0.703 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh--CCCCCCCC
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE--GTQVCPQC 82 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke--G~~~CpqC 82 (1040)
....|.||-+..- ++.+ - .|+--.|+.|.+--.++ ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEE-C-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEE-e-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999998753 2333 2 68999999999776664 66789988
No 67
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=60.05 E-value=6 Score=33.85 Aligned_cols=50 Identities=30% Similarity=0.633 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh-CCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-GTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke-G~~~CpqCkt~Ykr 88 (1040)
....|.||-+..- ++.+ -..|+--.|+.|.+--.++ +...||.|++++.+
T Consensus 14 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3458999987652 2322 3348999999999776654 45799999997644
No 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=59.42 E-value=5.2 Score=37.09 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=37.2
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.-.|.||.+..- ++.+ . .|+--.|+.|.+--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999988752 2333 3 6899999999987777767899999999854
No 69
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=58.80 E-value=4.8 Score=36.96 Aligned_cols=48 Identities=23% Similarity=0.582 Sum_probs=35.1
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.-.|.||.+..- ++.+ ...|+-..|+.|.+--.+. +..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 448999988752 2332 2368989999999666555 4899999998854
No 70
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.69 E-value=3.7 Score=35.13 Aligned_cols=48 Identities=29% Similarity=0.818 Sum_probs=34.3
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh------CCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE------GTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke------G~~~CpqCkt~Ykr 88 (1040)
...|.||-+... ++. .. .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~-----~p~-~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLT-----EPL-SL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECS-----SCC-CC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccC-----Cee-EC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 458999998752 122 23 68889999999744333 37899999998853
No 71
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=57.10 E-value=4.9 Score=38.73 Aligned_cols=45 Identities=24% Similarity=0.580 Sum_probs=32.2
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.|.||-+..- ++ |.. .||--.|+.|..--. +.+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988752 22 223 478889999986443 446789999998753
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=57.10 E-value=5 Score=39.81 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=37.6
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
-.|.||.+..- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 48999998752 23 446 7999999999988877777799999988754
No 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.01 E-value=5.3 Score=37.32 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=33.3
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
.-.|.||-+... ++.+.. .||--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 358999987752 343333 6899999999965444 78999999984
No 74
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.89 E-value=5.9 Score=34.16 Aligned_cols=29 Identities=28% Similarity=0.660 Sum_probs=23.1
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPV 63 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~Fpv 63 (1040)
-.-+|.-||.++.+..+ .-+-|.+|++.|
T Consensus 20 v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 44699999999988753 348999999876
No 75
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=56.87 E-value=5.5 Score=35.26 Aligned_cols=48 Identities=25% Similarity=0.582 Sum_probs=34.5
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHh-hCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-EGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk-eG~~~CpqCkt~Yk 87 (1040)
.-.|.||.+..- ++. .-..|+--.|+.|.+--.+ .++..||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----Cce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997642 232 2223899999999976554 35579999999873
No 76
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=54.74 E-value=3.3 Score=42.85 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=21.5
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhH
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE 69 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCye 69 (1040)
.+.-+|++||+.|+-. +=+||++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 5667999999998765 5589999985
No 77
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=50.49 E-value=6.4 Score=36.64 Aligned_cols=55 Identities=27% Similarity=0.698 Sum_probs=40.3
Q ss_pred CCCccccccccccccc-CCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLT-VDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~-~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3456899998886442 345555555 89999999999765554 4799999998853
No 78
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=49.52 E-value=5.5 Score=34.05 Aligned_cols=59 Identities=24% Similarity=0.560 Sum_probs=39.9
Q ss_pred CCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHH---HHhhCCCCCCCChhhhhcccCCCC
Q 039060 28 PLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY---ERREGTQVCPQCKTRYKRLKGSPR 94 (1040)
Q Consensus 28 ~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyey---erkeG~~~CpqCkt~Ykr~kg~p~ 94 (1040)
+++..+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.=.||.|... +..++.+|
T Consensus 2 ~~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~-~~~~~~~~ 63 (66)
T 1xwh_A 2 AMAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA-TVQEVQPR 63 (66)
T ss_dssp CCCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT-CCCCCCCC
T ss_pred CcCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc-ccccCccc
Confidence 3455677799999973 3 4788999976656677752 244688899999754 23334444
No 79
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=48.85 E-value=7.6 Score=43.68 Aligned_cols=35 Identities=23% Similarity=0.617 Sum_probs=29.0
Q ss_pred CCCcccccccccc-cccCCCCeeecCCCCCCCcccchhH
Q 039060 32 LDAQVCEICGDEI-GLTVDGDLFVACNECGFPVCRPCYE 69 (1040)
Q Consensus 32 ~~~~~c~iCg~~v-g~~~~G~~fvaC~eC~FpvCRpCye 69 (1040)
.....|..|+..+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 4567999999997 675555 6799999999999995
No 80
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=48.50 E-value=7.8 Score=46.03 Aligned_cols=36 Identities=19% Similarity=0.540 Sum_probs=30.5
Q ss_pred CCCcccccccccc-cccCCCCeeecCCCCCCCcccchhHH
Q 039060 32 LDAQVCEICGDEI-GLTVDGDLFVACNECGFPVCRPCYEY 70 (1040)
Q Consensus 32 ~~~~~c~iCg~~v-g~~~~G~~fvaC~eC~FpvCRpCyey 70 (1040)
.....|..|++-+ |+.-.| ..|..|+|.||+-|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 4567999999997 776655 78999999999999965
No 81
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=47.39 E-value=9.7 Score=40.52 Aligned_cols=49 Identities=24% Similarity=0.741 Sum_probs=39.0
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHH-HhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye-rkeG~~~CpqCkt~Ykr 88 (1040)
-..|++|-+-|.. | +.|..|+-..=+.|++-- +..++..||.|++....
T Consensus 180 i~~C~iC~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5589999999875 2 889889999889999654 44456799999998743
No 82
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=46.86 E-value=5.8 Score=38.70 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=36.8
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
.-.|.||.+-.- ++ |.. .|+=-.|+.|.+--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999998652 23 344 89999999999888888888999999875
No 83
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.79 E-value=16 Score=29.56 Aligned_cols=45 Identities=22% Similarity=0.529 Sum_probs=32.2
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
...|.||-+..-. -... .|+--.|+.|.+- .+..||.|+++....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 4479999887531 1223 4677889999744 678999999988654
No 84
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=46.26 E-value=5.7 Score=36.96 Aligned_cols=55 Identities=29% Similarity=0.727 Sum_probs=39.7
Q ss_pred CCcccccccccccccC-CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTV-DGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~-~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
+...|.||-+...... +|+..+.- .||---|+.|.+--.++ +..||.|++.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 4458999998864432 45544544 78999999999655554 46999999998654
No 85
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=46.05 E-value=12 Score=34.93 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=35.5
Q ss_pred CCccccccccccccc----------CCCC-eeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhh
Q 039060 33 DAQVCEICGDEIGLT----------VDGD-LFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~----------~~G~-~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
....|.||-+.+... ..|+ .-+.--.|+---++.|-.-= -..+..||-|+..|+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-l~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-LKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH-HTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH-HHcCCcCcCCCCcce
Confidence 456899998886543 1122 12222368889999998443 345789999999864
No 86
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=46.04 E-value=9.3 Score=43.63 Aligned_cols=48 Identities=29% Similarity=0.664 Sum_probs=33.8
Q ss_pred cccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcc
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~ 89 (1040)
..|.||-+..- + -...+ |+=-.|+.|..--.+.++..||-|+++....
T Consensus 333 ~~C~ICle~~~---~-pv~lp---CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIEP---CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---C-EEEET---TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---C-eEEeC---CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999977651 1 12444 4555699999655554789999999988653
No 87
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=45.37 E-value=2.9 Score=39.70 Aligned_cols=31 Identities=16% Similarity=0.579 Sum_probs=20.7
Q ss_pred eeecCCCCCCCcccchhHHHHhhCCC-CCCCChhhhhcc
Q 039060 52 LFVACNECGFPVCRPCYEYERREGTQ-VCPQCKTRYKRL 89 (1040)
Q Consensus 52 ~fvaC~eC~FpvCRpCyeyerkeG~~-~CpqCkt~Ykr~ 89 (1040)
...-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 35667777753 33344456 899999987665
No 88
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.07 E-value=19 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.678 Sum_probs=32.2
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCC-cccchhHHHHhhCCCCCCCChhhhhc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.+...|.||-+.. .--.|++| +=- .|..|.+. .+.||.|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3466899998763 22356777 434 89999972 4899999998754
No 89
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.28 E-value=34 Score=27.12 Aligned_cols=43 Identities=23% Similarity=0.668 Sum_probs=30.9
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh--CCCCCCCC
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE--GTQVCPQC 82 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke--G~~~CpqC 82 (1040)
....|.||-+.... . ... .|+--.|+.|.+--.++ ++..||.|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34589999988632 1 122 57888899999766544 77899988
No 90
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=42.69 E-value=9 Score=32.18 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=34.0
Q ss_pred CCCCcccccccccccccCCCCeee--cCCCCCCC-cccchhHHHHhhCCCCCCCChhhhh
Q 039060 31 NLDAQVCEICGDEIGLTVDGDLFV--ACNECGFP-VCRPCYEYERREGTQVCPQCKTRYK 87 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~fv--aC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Yk 87 (1040)
......|.||-|+..- -.|+ +| |=- .|..|.+--. +.+..||-|+.+.+
T Consensus 5 ~~~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 3455689999886321 1455 54 655 6999997554 45688999998874
No 91
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=42.37 E-value=7.4 Score=34.00 Aligned_cols=57 Identities=25% Similarity=0.572 Sum_probs=42.5
Q ss_pred CCCCCCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHH-HhhCCCCCCCChhh
Q 039060 27 KPLKNLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREGTQVCPQCKTR 85 (1040)
Q Consensus 27 ~~~~~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye-rkeG~~~CpqCkt~ 85 (1040)
-+....+...|.+|++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 9 ~~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 9 MQSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp -CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44556677899999874 23456678999999888778888643 45788999999764
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=41.71 E-value=8.1 Score=33.56 Aligned_cols=53 Identities=25% Similarity=0.584 Sum_probs=35.8
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHH---HhhCCCCCCCChhhhhcc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE---RREGTQVCPQCKTRYKRL 89 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye---rkeG~~~CpqCkt~Ykr~ 89 (1040)
+...|.+|+.. .+|+..+.|..|.--.=-.|.... ..+|.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 45589999875 368889999988533323454332 234788999998876543
No 93
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=41.27 E-value=7.8 Score=47.98 Aligned_cols=59 Identities=36% Similarity=0.826 Sum_probs=42.4
Q ss_pred CCCCcccccccccccccCC---CCeeecCCCCC--------------------CCcccchh-HHH----Hh--hCCCCCC
Q 039060 31 NLDAQVCEICGDEIGLTVD---GDLFVACNECG--------------------FPVCRPCY-EYE----RR--EGTQVCP 80 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~---G~~fvaC~eC~--------------------FpvCRpCy-eye----rk--eG~~~Cp 80 (1040)
..+..+|.-|=.++---.| +=+|.-|..|| ||.|..|. ||+ || ----+||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 4566799999999733222 55899999994 99999996 455 33 1124999
Q ss_pred CChhhhhcc
Q 039060 81 QCKTRYKRL 89 (1040)
Q Consensus 81 qCkt~Ykr~ 89 (1040)
.|+=++.-.
T Consensus 183 ~CGP~l~l~ 191 (772)
T 4g9i_A 183 VCGPSYRLY 191 (772)
T ss_dssp TTSCCEEEE
T ss_pred cCCceEEEE
Confidence 999887543
No 94
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.84 E-value=20 Score=33.72 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=15.6
Q ss_pred CcccchhHHHHhhCC-CCCCCChhhh
Q 039060 62 PVCRPCYEYERREGT-QVCPQCKTRY 86 (1040)
Q Consensus 62 pvCRpCyeyerkeG~-~~CpqCkt~Y 86 (1040)
|.|+.||.. +-+. ..|-.|+.+-
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I 79 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMG 79 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCS
T ss_pred eecHHHHHH--HcCCCCccccCCCCc
Confidence 458999843 3443 3799998866
No 95
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.83 E-value=2.4 Score=37.24 Aligned_cols=42 Identities=26% Similarity=0.596 Sum_probs=31.7
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCC
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDE 99 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~ 99 (1040)
..+| |+|+.=.+|++.+|.-.|+.|+..|--..|-|..--||
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAE 49 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhh
Confidence 5677 55555556666788889999999999888888665554
No 96
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=38.56 E-value=4.2 Score=39.94 Aligned_cols=14 Identities=21% Similarity=0.607 Sum_probs=10.4
Q ss_pred CCCCCCChhhhhcc
Q 039060 76 TQVCPQCKTRYKRL 89 (1040)
Q Consensus 76 ~~~CpqCkt~Ykr~ 89 (1040)
...||.|+.+--..
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 57899999875443
No 97
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.50 E-value=14 Score=31.79 Aligned_cols=43 Identities=35% Similarity=0.787 Sum_probs=30.0
Q ss_pred CcccccccccccccCCCCeeecCCCCCCC-cccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+..- --.+.+ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123445 5666 7999984 23889999998754
No 98
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=37.03 E-value=11 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.722 Sum_probs=26.3
Q ss_pred CcccccccccccccCCCCeeecCCCC-CCCcccchhHHH
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNEC-GFPVCRPCYEYE 71 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC-~FpvCRpCyeye 71 (1040)
+-.|..|+.+|| .-.-|.+| .|-+|..||.-.
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhCC
Confidence 357999999863 36899999 899999999653
No 99
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.11 E-value=18 Score=34.08 Aligned_cols=45 Identities=29% Similarity=0.650 Sum_probs=25.5
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhHHHHhhCC-CCCCCChhhh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGT-QVCPQCKTRY 86 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerkeG~-~~CpqCkt~Y 86 (1040)
.|..|+..+. +.|..|+. .=+-|.|++||.. +-+. ..|..|+++-
T Consensus 31 ~C~~C~~~L~--~~~~~~~~--~~g~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 31 SCDLCGCRLG--EVGRRLYY--KLGRKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp BCTTTCCBCS--STTCCEEE--ETTEEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred ccCcCCCccc--cCCCeEEE--ECCEEeecCchhh--hCCCccChhhcCCcc
Confidence 5666766542 11222222 1134679999843 3332 4899999876
No 100
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=34.59 E-value=2.9 Score=30.04 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=14.5
Q ss_pred CCCcccchhHHHHhhCCCCCCCChh
Q 039060 60 GFPVCRPCYEYERREGTQVCPQCKT 84 (1040)
Q Consensus 60 ~FpvCRpCyeyerkeG~~~CpqCkt 84 (1040)
.||+||+|+.=-++ .++...|++
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999933333 445555554
No 101
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.25 E-value=3.1 Score=36.28 Aligned_cols=42 Identities=17% Similarity=0.518 Sum_probs=32.0
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCC
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDE 99 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~ 99 (1040)
..+| |+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--||
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESE 49 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhh
Confidence 5677 55555556666788889999999999998888766554
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.15 E-value=25 Score=32.96 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=38.9
Q ss_pred Ccccccccccccc--cCCCCeeecCCCCCCCcccchhHH------HHhhCCCCCCCChh
Q 039060 34 AQVCEICGDEIGL--TVDGDLFVACNECGFPVCRPCYEY------ERREGTQVCPQCKT 84 (1040)
Q Consensus 34 ~~~c~iCg~~vg~--~~~G~~fvaC~eC~FpvCRpCyey------erkeG~~~CpqCkt 84 (1040)
..+|.+|...=.. +.+++.++.|..|+-..=..|.++ ..++++=.||.||+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 3489999765333 346678999999988777788854 35789999999984
No 103
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.04 E-value=17 Score=32.37 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHH----HhhCC---CCCCC--Chhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE----RREGT---QVCPQ--CKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye----rkeG~---~~Cpq--Ckt~Y 86 (1040)
+...|.||-+++. +..++.-..|+=.-|+.|..-- .++|. -.||+ |+..+
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3458999998753 2344444457889999997544 34664 48999 99874
No 104
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.85 E-value=15 Score=32.12 Aligned_cols=25 Identities=32% Similarity=0.901 Sum_probs=16.5
Q ss_pred cccccccccccccCCCCeeecCCCCCC
Q 039060 35 QVCEICGDEIGLTVDGDLFVACNECGF 61 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~~G~~fvaC~eC~F 61 (1040)
-+|.-||.++.+.. ++ -+.|.+||+
T Consensus 29 Y~C~~CG~~~e~~~-~d-~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSR-TD-AVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCT-TS-TTCCSSSCC
T ss_pred EECCCCCCcceeCC-CC-CccCCCCCc
Confidence 37888888877662 22 246777776
No 105
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.52 E-value=20 Score=30.16 Aligned_cols=47 Identities=23% Similarity=0.644 Sum_probs=35.1
Q ss_pred CCCCcccccccccccccCCCCeeecCCCCCCCcccchhHH---HHhhCCCCCCCChh
Q 039060 31 NLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY---ERREGTQVCPQCKT 84 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyey---erkeG~~~CpqCkt 84 (1040)
..+...|.+|++. ...+.|..|.-..=-.|..- +.-+|.=.||.|..
T Consensus 8 ~~~~~~C~vC~~~-------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC-------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC-------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456689999972 35788999877666677765 34578899999975
No 106
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=33.01 E-value=9.8 Score=46.03 Aligned_cols=45 Identities=7% Similarity=-0.124 Sum_probs=18.0
Q ss_pred cccccc-cccccc--CCCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhh
Q 039060 36 VCEICG-DEIGLT--VDGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 36 ~c~iCg-~~vg~~--~~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~ 85 (1040)
.|..|| .++-.. ..|..|..| |+||-|+.-.-. +.....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 664432 367789999 566666644322 224478998 644
No 107
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.44 E-value=22 Score=31.93 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=33.1
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh-----CCCCCCC--Chhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-----GTQVCPQ--CKTR 85 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke-----G~~~Cpq--Ckt~ 85 (1040)
.-+|.||.+-. . ++.+.- .||.-.||.|-+--.++ +...||. |+..
T Consensus 7 ~~~CPI~~~~~-~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEM-K----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBC-S----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchh-c----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34899998653 2 455542 68999999998766554 3468999 8866
No 108
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.21 E-value=21 Score=31.91 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=14.7
Q ss_pred CcccchhHHHHhhCCCCCCCChhhh
Q 039060 62 PVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 62 pvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
+.|++||+ ++- ...|.+|+.+-
T Consensus 55 ~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 55 ILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEChhHhh--hhc-CCccccCCCcc
Confidence 56888883 222 36788888765
No 109
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.97 E-value=11 Score=35.51 Aligned_cols=25 Identities=32% Similarity=0.844 Sum_probs=18.2
Q ss_pred cCCCCCCCcccchhHHHHhhCCCCCCCChhh
Q 039060 55 ACNECGFPVCRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 55 aC~eC~FpvCRpCyeyerkeG~~~CpqCkt~ 85 (1040)
.|.+|||-.+ ++-.....||.||..
T Consensus 69 ~C~~CG~~F~------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVFK------AEINIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred ChhhCcCeec------ccCCCCCCCcCCCCC
Confidence 4999999871 234455889999864
No 110
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.78 E-value=31 Score=30.07 Aligned_cols=62 Identities=21% Similarity=0.559 Sum_probs=34.7
Q ss_pred CCCCCCcccccccccccc----cCCCCee----ecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCC
Q 039060 29 LKNLDAQVCEICGDEIGL----TVDGDLF----VACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSP 93 (1040)
Q Consensus 29 ~~~~~~~~c~iCg~~vg~----~~~G~~f----vaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p 93 (1040)
.+......|..|+..|.. .+.|..+ ..|.+|+=++=.-.|-.-.+||.-. |+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~y---C~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFY---CLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCE---ETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEE---ChHHHHhhhcCC
Confidence 344556799999999853 3456554 2355555444433331102566544 456677666554
No 111
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=31.67 E-value=45 Score=33.34 Aligned_cols=52 Identities=21% Similarity=0.597 Sum_probs=30.3
Q ss_pred CCCCcccccccccccc----cCCCCee----ecCCCCCCCc------------ccchhHHHHhhCCCCCCCChhh
Q 039060 31 NLDAQVCEICGDEIGL----TVDGDLF----VACNECGFPV------------CRPCYEYERREGTQVCPQCKTR 85 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~----~~~G~~f----vaC~eC~Fpv------------CRpCyeyerkeG~~~CpqCkt~ 85 (1040)
......|..|+..|.- .+.|..+ ..|.+|.=|+ |+.||. ++-+ ..|..|+++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~ 128 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLG 128 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCC
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCc
Confidence 3445699999998853 2345543 2467776554 666662 1222 456666653
No 112
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=31.60 E-value=14 Score=45.02 Aligned_cols=56 Identities=34% Similarity=0.833 Sum_probs=41.1
Q ss_pred CCCcccccccccccccCC---CCeeecCCCC--------------------CCCcccchh-HHH----Hh--hCCCCCCC
Q 039060 32 LDAQVCEICGDEIGLTVD---GDLFVACNEC--------------------GFPVCRPCY-EYE----RR--EGTQVCPQ 81 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~---G~~fvaC~eC--------------------~FpvCRpCy-eye----rk--eG~~~Cpq 81 (1040)
.+..+|.-|=.++---.| +=+|.-|..| .||.|..|. ||+ || ----+||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 355699999999743222 4589999999 499999997 455 43 12259999
Q ss_pred Chhhhh
Q 039060 82 CKTRYK 87 (1040)
Q Consensus 82 Ckt~Yk 87 (1040)
|+=++.
T Consensus 95 CGP~l~ 100 (657)
T 3ttc_A 95 CGPYLE 100 (657)
T ss_dssp TSCCEE
T ss_pred cCccce
Confidence 998873
No 113
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.86 E-value=55 Score=28.84 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCCCCCCCcccccccccccc----cCCCCeee----cCCCCCCCc
Q 039060 26 PKPLKNLDAQVCEICGDEIGL----TVDGDLFV----ACNECGFPV 63 (1040)
Q Consensus 26 ~~~~~~~~~~~c~iCg~~vg~----~~~G~~fv----aC~eC~Fpv 63 (1040)
.++.+......|..|+..|.- .+.|..+- .|.+|.=++
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L 52 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKL 52 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBC
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCC
Confidence 445555667899999998853 34565542 355564433
No 114
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.81 E-value=5.7 Score=34.53 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=31.4
Q ss_pred eecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCCC
Q 039060 53 FVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDED 100 (1040)
Q Consensus 53 fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~ 100 (1040)
..+| |+|+.=.+|...+|.-.|+.|+..|--..|=|..--||.
T Consensus 10 iL~C-----P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ea 52 (67)
T 2jny_A 10 VLAC-----PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEA 52 (67)
T ss_dssp CCBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred HhCC-----CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhHh
Confidence 4566 455544455556788899999999999999997766643
No 115
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.75 E-value=23 Score=30.38 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=35.1
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHH---HhhCCCCCCCChh
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE---RREGTQVCPQCKT 84 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye---rkeG~~~CpqCkt 84 (1040)
..+..|.+|++. | ..+-|..|.-..=-.|..-- .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 355689999852 4 47889999988888898533 3478889999974
No 116
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.74 E-value=5.5 Score=34.72 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=28.3
Q ss_pred CcccchhHHHHhhCCCCCCCChhhhhcccCCCCCCCCCCc
Q 039060 62 PVCRPCYEYERREGTQVCPQCKTRYKRLKGSPRVEGDEDE 101 (1040)
Q Consensus 62 pvCRpCyeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~e 101 (1040)
|+|+-=.+|++.+|.-.|+.|+..|--..|-|..--||..
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 12 PVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp SSSCCBCEEETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 3333333455566888999999999999999877666533
No 117
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.54 E-value=45 Score=29.29 Aligned_cols=48 Identities=25% Similarity=0.752 Sum_probs=34.1
Q ss_pred CcccccccccccccCCCCeeecCCCCCCCcccchhHHH-HhhCCCCCCCChhhhh
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREGTQVCPQCKTRYK 87 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye-rkeG~~~CpqCkt~Yk 87 (1040)
-..|.||-+.|.. | ..|.+|+-..=..|..-= +..++..||.|++...
T Consensus 15 i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3489999999863 3 367677666667787433 4445689999998773
No 118
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.22 E-value=29 Score=37.63 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHhh-CCCCCCC--Chhhhhc
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-GTQVCPQ--CKTRYKR 88 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerke-G~~~Cpq--Ckt~Ykr 88 (1040)
...-.|.||.+-. -++.. ...||---||.|.+--.++ |+..||. |+.++..
T Consensus 179 ~~el~CPIcl~~f-----~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcc-----cCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3445899999875 23332 3478989999999866555 5578999 9998743
No 119
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.75 E-value=32 Score=34.62 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=15.7
Q ss_pred CcccchhHHHHhhCCC-CCCCChhhh
Q 039060 62 PVCRPCYEYERREGTQ-VCPQCKTRY 86 (1040)
Q Consensus 62 pvCRpCyeyerkeG~~-~CpqCkt~Y 86 (1040)
+.|+.||. ++-+.+ .|..|+++-
T Consensus 56 ~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 56 ILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp EECHHHHH--HHHSCCEECTTTCCEE
T ss_pred cccccccc--cccccCCccccCCCcc
Confidence 46888884 234444 799999865
No 120
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.42 E-value=35 Score=28.61 Aligned_cols=47 Identities=26% Similarity=0.709 Sum_probs=35.0
Q ss_pred CCCcccccccccccccCCCCeeecCCCCCCCcccchhHH---HHhhCCCCCCCChhh
Q 039060 32 LDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY---ERREGTQVCPQCKTR 85 (1040)
Q Consensus 32 ~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyey---erkeG~~~CpqCkt~ 85 (1040)
.+...|.+|++ |...+-|..|.-..=-.|..- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35668999996 335789999987777778862 344788899999753
No 121
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=26.96 E-value=21 Score=32.30 Aligned_cols=54 Identities=26% Similarity=0.629 Sum_probs=40.5
Q ss_pred CCCCcccccccccccccCCCCeeecCCCCCCCcccchhHHH-HhhCCCCCCCChhhh
Q 039060 31 NLDAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREGTQVCPQCKTRY 86 (1040)
Q Consensus 31 ~~~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeye-rkeG~~~CpqCkt~Y 86 (1040)
..+...|.+|++. -..+++..+-|..|.-..=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3456799999964 22456789999999877777888643 457899999997653
No 122
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.82 E-value=53 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=7.0
Q ss_pred Cccccccccccc
Q 039060 34 AQVCEICGDEIG 45 (1040)
Q Consensus 34 ~~~c~iCg~~vg 45 (1040)
+..|..|+..|.
T Consensus 5 ~~~C~~C~~~I~ 16 (72)
T 1x61_A 5 SSGCGGCGEDVV 16 (72)
T ss_dssp CCCCSSSCSCCC
T ss_pred CCCCccCCCccC
Confidence 446666666553
No 123
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=26.12 E-value=24 Score=29.45 Aligned_cols=47 Identities=19% Similarity=0.514 Sum_probs=32.1
Q ss_pred CcccccccccccccCCCCeee--cCCCCCCC-cccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFV--ACNECGFP-VCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fv--aC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-|.-- .-.++ +| |-- .|..|.+--.+ .+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999988631 11244 65 544 79999975544 45899999998753
No 124
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=25.23 E-value=17 Score=37.56 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=24.6
Q ss_pred cccccccccccc----cCCCCe-eecCCCCCCCcccchhH
Q 039060 35 QVCEICGDEIGL----TVDGDL-FVACNECGFPVCRPCYE 69 (1040)
Q Consensus 35 ~~c~iCg~~vg~----~~~G~~-fvaC~eC~FpvCRpCye 69 (1040)
.+|..||.+.-. +++|+. .+-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 489999987332 235553 45556777899999994
No 125
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.13 E-value=22 Score=29.84 Aligned_cols=53 Identities=17% Similarity=0.559 Sum_probs=33.6
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhHHHHh----hCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR----EGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCyeyerk----eG~~~CpqCkt~Ykr 88 (1040)
++..|.+|+..- .+++..|+|..|.-=.=-.|.....+ .+.-.||.|..+..|
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 456899998753 34677999988843333344433322 266889999875544
No 126
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=31 Score=29.98 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=30.7
Q ss_pred CCCCCCCCCcccccccccccc----cCCCCee----ecCCCCCCCcccchhHHHHhhCCCCCCC
Q 039060 26 PKPLKNLDAQVCEICGDEIGL----TVDGDLF----VACNECGFPVCRPCYEYERREGTQVCPQ 81 (1040)
Q Consensus 26 ~~~~~~~~~~~c~iCg~~vg~----~~~G~~f----vaC~eC~FpvCRpCyeyerkeG~~~Cpq 81 (1040)
.+|.+......|..|+..|.. .+.|..+ ..|.+|.-++=-.+| .++|.-.|..
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~g~~yC~~ 67 (80)
T 2dj7_A 7 GKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI---SKDGVPYCES 67 (80)
T ss_dssp CCCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCE---EETTEEECTT
T ss_pred CCCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeE---EECCEEECHH
Confidence 455666677899999999853 2344443 346677655533332 2455444443
No 127
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=24.65 E-value=28 Score=39.05 Aligned_cols=43 Identities=30% Similarity=0.773 Sum_probs=31.0
Q ss_pred CcccccccccccccCCCCeeecCCCCCCC-cccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~~G~~fvaC~eC~Fp-vCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+..- .-.+.+ ||-- .|+.|..-- ..||-|++++.+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999998741 123555 5777 899998632 789999998864
No 128
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.57 E-value=43 Score=28.90 Aligned_cols=54 Identities=20% Similarity=0.480 Sum_probs=31.0
Q ss_pred CCCCCCccccccccccc---ccCCCCee----ecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 29 LKNLDAQVCEICGDEIG---LTVDGDLF----VACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 29 ~~~~~~~~c~iCg~~vg---~~~~G~~f----vaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
.+.....+|..|+..|. +.+.|..+ .-|.+|.-++=...| -++|.-. |+.-|.+
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f---~~~g~~y---C~~cy~~ 70 (79)
T 2cor_A 10 ARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR---ELKGELY---CLPCHDK 70 (79)
T ss_dssp CCCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE---EETTEEE---CHHHHHT
T ss_pred hhccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE---eECCEEe---CHHHHHH
Confidence 34456679999999876 22345543 247777666555533 2455443 3444554
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.53 E-value=23 Score=35.56 Aligned_cols=35 Identities=34% Similarity=0.652 Sum_probs=25.2
Q ss_pred ccccccc-ccccc----cCCCC-eeecCCCCCCCcccchhH
Q 039060 35 QVCEICG-DEIGL----TVDGD-LFVACNECGFPVCRPCYE 69 (1040)
Q Consensus 35 ~~c~iCg-~~vg~----~~~G~-~fvaC~eC~FpvCRpCye 69 (1040)
.+|..|| .+.-. +.+|+ .++--+|=--|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 55332 23555 466777888999999994
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.36 E-value=5.3 Score=34.94 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.1
Q ss_pred hHHHHhhCCCCCCCChhhhhcccCCCCCCCCCC
Q 039060 68 YEYERREGTQVCPQCKTRYKRLKGSPRVEGDED 100 (1040)
Q Consensus 68 yeyerkeG~~~CpqCkt~Ykr~kg~p~v~gd~~ 100 (1040)
.+|++.+|.-.|+.|+..|--..|-|..--||.
T Consensus 18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ea 50 (69)
T 2pk7_A 18 LKLSADKTELISKGAGLAYPIRDGIPVMLESEA 50 (69)
T ss_dssp CEECTTSSEEEETTTTEEEEEETTEECCCGGGC
T ss_pred CeEeCCCCEEEcCCCCcEecCcCCeeeeChhhc
Confidence 344455788899999999999988887665543
No 131
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=23.92 E-value=19 Score=34.31 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=0.4
Q ss_pred CcccccccccccccC-----------CCCeeecCCCCCCCcccchhHHHHhhCCCCCCCChhhhhc
Q 039060 34 AQVCEICGDEIGLTV-----------DGDLFVACNECGFPVCRPCYEYERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 34 ~~~c~iCg~~vg~~~-----------~G~~fvaC~eC~FpvCRpCyeyerkeG~~~CpqCkt~Ykr 88 (1040)
...|.||-+++.... .++.-+.--.|+-.-|+.|-.-=. ..+..||-|+.+++-
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeeee
Confidence 368999999875421 222233333678888999984333 337899999998653
No 132
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.98 E-value=35 Score=31.85 Aligned_cols=24 Identities=38% Similarity=0.966 Sum_probs=17.4
Q ss_pred CCCcccchhHHHHhhCCCCCCCChhhh
Q 039060 60 GFPVCRPCYEYERREGTQVCPQCKTRY 86 (1040)
Q Consensus 60 ~FpvCRpCyeyerkeG~~~CpqCkt~Y 86 (1040)
+-|.|++||.- +-+ ..|..|+++-
T Consensus 50 g~~yC~~cy~~--~~~-~~C~~C~~~I 73 (126)
T 2xqn_T 50 DKPVCKPCYVK--NHA-VVCQGCHNAI 73 (126)
T ss_dssp TEEEEHHHHHH--HSC-CBCTTTCSBC
T ss_pred CEEechHHhCc--CcC-ccCcccCCcC
Confidence 45789999942 333 6899999875
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.97 E-value=30 Score=35.49 Aligned_cols=54 Identities=20% Similarity=0.441 Sum_probs=35.3
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchh---H--HHHh-----hCCCCCCCChhhh
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY---E--YERR-----EGTQVCPQCKTRY 86 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCy---e--yerk-----eG~~~CpqCkt~Y 86 (1040)
+|+.|.+|+..-.-++.+...+.|..|..=+=..|- + +|.- +..=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 478999998765444445669999999765544443 2 2221 1357999997643
No 134
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.27 E-value=25 Score=28.79 Aligned_cols=15 Identities=27% Similarity=1.121 Sum_probs=13.3
Q ss_pred CCCCCCCChhhhhcc
Q 039060 75 GTQVCPQCKTRYKRL 89 (1040)
Q Consensus 75 G~~~CpqCkt~Ykr~ 89 (1040)
|...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999876
No 135
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.11 E-value=30 Score=27.66 Aligned_cols=45 Identities=29% Similarity=0.803 Sum_probs=31.1
Q ss_pred ccccccccccccCCCCeeecCCCCCCCcccchhH---HHHhhCCCCCCCChh
Q 039060 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE---YERREGTQVCPQCKT 84 (1040)
Q Consensus 36 ~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCye---yerkeG~~~CpqCkt 84 (1040)
.|.+|++. .+++..+-|..|.-..=-.|+. .+.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 3456789999886544455663 234467888999964
No 136
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.67 E-value=20 Score=29.86 Aligned_cols=49 Identities=20% Similarity=0.712 Sum_probs=35.2
Q ss_pred CCcccccccccccccCCCCeeecCCCCCCCcccchhH--H-HHhhCCCCCCCChhhhhc
Q 039060 33 DAQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE--Y-ERREGTQVCPQCKTRYKR 88 (1040)
Q Consensus 33 ~~~~c~iCg~~vg~~~~G~~fvaC~eC~FpvCRpCye--y-erkeG~~~CpqCkt~Ykr 88 (1040)
+...|.+|++. | ..+.|..|.-..=..|.. . +.-+|.-.||.|......
T Consensus 4 ~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 55689999973 3 578899997555566776 2 234688899999876544
No 137
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=21.56 E-value=28 Score=31.49 Aligned_cols=28 Identities=29% Similarity=0.831 Sum_probs=21.3
Q ss_pred cccccccccccccC----CCCeeecCCCCCCCc
Q 039060 35 QVCEICGDEIGLTV----DGDLFVACNECGFPV 63 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~----~G~~fvaC~eC~Fpv 63 (1040)
..|. |||..-+++ +|+..|.|..|..-|
T Consensus 31 y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred EeCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 4687 998866653 688888888888766
No 138
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.48 E-value=78 Score=26.43 Aligned_cols=13 Identities=31% Similarity=0.910 Sum_probs=6.5
Q ss_pred hCCCCCCCChhhh
Q 039060 74 EGTQVCPQCKTRY 86 (1040)
Q Consensus 74 eG~~~CpqCkt~Y 86 (1040)
.|..+|..|+.-+
T Consensus 28 ~ge~vC~~CGlVl 40 (58)
T 1dl6_A 28 AGDMICPECGLVV 40 (58)
T ss_dssp SCCEECTTTCCEE
T ss_pred CCeEEeCCCCCEE
Confidence 3444555555555
No 139
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.30 E-value=36 Score=29.32 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=7.8
Q ss_pred Cccccccccccc
Q 039060 34 AQVCEICGDEIG 45 (1040)
Q Consensus 34 ~~~c~iCg~~vg 45 (1040)
...|..|+..|.
T Consensus 7 ~~~C~~C~~~I~ 18 (81)
T 1a7i_A 7 GNKCGACGRTVY 18 (81)
T ss_dssp -CBCSSSCCBCS
T ss_pred CCcCcCcCcccc
Confidence 457777777764
No 140
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=20.76 E-value=22 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.829 Sum_probs=20.4
Q ss_pred cccccccccccccC----CCCeeecCCCCCCCc
Q 039060 35 QVCEICGDEIGLTV----DGDLFVACNECGFPV 63 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~----~G~~fvaC~eC~Fpv 63 (1040)
-.|. |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred EcCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 3687 888865553 588888888887766
No 141
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.51 E-value=69 Score=26.73 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=8.7
Q ss_pred CCccccccccccc
Q 039060 33 DAQVCEICGDEIG 45 (1040)
Q Consensus 33 ~~~~c~iCg~~vg 45 (1040)
....|..|+..|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (72)
T 1x4l_A 4 GSSGCAGCTNPIS 16 (72)
T ss_dssp CSCSBTTTTBCCC
T ss_pred CCCCCcCCCcccc
Confidence 3457777777765
No 142
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=20.50 E-value=25 Score=31.83 Aligned_cols=28 Identities=25% Similarity=0.821 Sum_probs=20.4
Q ss_pred cccccccccccccC----CCCeeecCCCCCCCc
Q 039060 35 QVCEICGDEIGLTV----DGDLFVACNECGFPV 63 (1040)
Q Consensus 35 ~~c~iCg~~vg~~~----~G~~fvaC~eC~Fpv 63 (1040)
..|. |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred EeCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 3687 888765553 688888888887766
No 143
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.26 E-value=9 Score=40.49 Aligned_cols=36 Identities=33% Similarity=0.651 Sum_probs=24.2
Q ss_pred ccccccccccccc---CCC-------C-eeecCCCCCCCcccchhHH
Q 039060 35 QVCEICGDEIGLT---VDG-------D-LFVACNECGFPVCRPCYEY 70 (1040)
Q Consensus 35 ~~c~iCg~~vg~~---~~G-------~-~fvaC~eC~FpvCRpCyey 70 (1040)
.+|..||.+.-.+ .+| + ..+-=+|=-.|+||-||.-
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~ 209 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIV 209 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCC
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcC
Confidence 4999999884332 244 3 2344567778999999943
Done!