Query 039061
Match_columns 399
No_of_seqs 115 out of 444
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:35:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rko_A NADH-quinone oxidoreduc 19.7 54 0.0018 28.2 2.4 19 152-170 105-123 (147)
2 1v54_D Cytochrome C oxidase su 18.0 24 0.00083 30.5 -0.2 31 145-175 91-121 (147)
3 2y69_D Cytochrome C oxidase su 15.0 32 0.0011 30.4 -0.2 31 145-175 113-143 (169)
4 2o8m_C Protease; NS3, NS4A, vi 14.9 45 0.0015 20.4 0.5 8 390-397 17-24 (26)
5 2lx0_A Membrane fusion protein 14.4 49 0.0017 20.5 0.6 10 110-119 20-29 (32)
6 3ixz_A Potassium-transporting 8.1 5.5E+02 0.019 28.4 6.7 25 109-133 960-984 (1034)
7 1p1p_A AA-conotoxin PIVA; neur 6.0 1.4E+02 0.0047 17.8 0.3 12 7-18 2-16 (26)
8 2ab9_A Pro-SFTI-1; protein, be 5.6 1.6E+02 0.0055 18.1 0.4 6 390-395 23-28 (31)
9 1pqr_A Alpha-A-conotoxin EIVA; 5.2 1.4E+02 0.0049 18.4 0.0 12 7-18 2-16 (31)
10 1r7c_A Genome polyprotein; mem 4.7 3.5E+02 0.012 17.1 1.5 15 369-383 3-17 (31)
No 1
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=19.66 E-value=54 Score=28.21 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039061 152 LVQVIILLDGVHTWNDAWV 170 (399)
Q Consensus 152 liQlIllvDFa~~wne~wv 170 (399)
++=+|+++.+.|+|++.=+
T Consensus 105 ~Fl~iL~~Gl~yEW~~GaL 123 (147)
T 3rko_A 105 IFIFVLLAGLVYLVRIGAL 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHcCCe
Confidence 3445788999999998633
No 2
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=17.98 E-value=24 Score=30.49 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039061 145 FGAGLFLLVQVIILLDGVHTWNDAWVAKDEQ 175 (399)
Q Consensus 145 ~ga~~FiliQlIllvDFa~~wne~wv~~~e~ 175 (399)
++..+|+.+.+..-=+--|+.++-|.++..+
T Consensus 91 ~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~e 121 (147)
T 1v54_D 91 FTALLLIWEKHYVYGPIPHTFEEEWVAKQTK 121 (147)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCHHHHHHHHH
Confidence 4555666666543335667888888875543
No 3
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=14.95 E-value=32 Score=30.41 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=19.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039061 145 FGAGLFLLVQVIILLDGVHTWNDAWVAKDEQ 175 (399)
Q Consensus 145 ~ga~~FiliQlIllvDFa~~wne~wv~~~e~ 175 (399)
++..+|+.+.+..-=+--|+.++.|.++..+
T Consensus 113 ~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~e 143 (169)
T 2y69_D 113 FTALLLIWEKHYVYGPIPHTFEEEWVAKQTK 143 (169)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCHHHHHHHHH
Confidence 4555666665543335667888888875544
No 4
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=14.93 E-value=45 Score=20.40 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=5.2
Q ss_pred cccCCCCC
Q 039061 390 PLLFPDRE 397 (399)
Q Consensus 390 P~i~pdRd 397 (399)
|.+-||||
T Consensus 17 p~v~Pdre 24 (26)
T 2o8m_C 17 PAIIPKKX 24 (26)
T ss_dssp CEECCCC-
T ss_pred eEEcCCcC
Confidence 66777776
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=14.42 E-value=49 Score=20.53 Aligned_cols=10 Identities=30% Similarity=0.540 Sum_probs=7.8
Q ss_pred cccchHHHHH
Q 039061 110 HHGGWCAKII 119 (399)
Q Consensus 110 ~nG~W~~K~l 119 (399)
.-|||.+|++
T Consensus 20 afgfwlfkyl 29 (32)
T 2lx0_A 20 AFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3489999986
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=8.06 E-value=5.5e+02 Score=28.39 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=14.1
Q ss_pred hcccchHHHHHHHHHHHhheeeecc
Q 039061 109 WHHGGWCAKIIIWALLVVLMFFLPN 133 (399)
Q Consensus 109 i~nG~W~~K~l~~~~l~i~~FfIP~ 133 (399)
+.|-++..-+++-+++.+...++|.
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~p~ 984 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYCPG 984 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555555555555667884
No 7
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=6.04 E-value=1.4e+02 Score=17.84 Aligned_cols=12 Identities=50% Similarity=1.295 Sum_probs=7.9
Q ss_pred chhh---hhhcccCC
Q 039061 7 CCAS---LTCGLCSS 18 (399)
Q Consensus 7 c~g~---a~c~~c~~ 18 (399)
|||+ |+|.-|+|
T Consensus 2 ccg~ypnaachpc~c 16 (26)
T 1p1p_A 2 CCGSYPNAACHPCSC 16 (26)
T ss_dssp CSTTSCCSSCCTTTS
T ss_pred ccccCCCcccccccc
Confidence 6664 67877765
No 8
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=5.63 E-value=1.6e+02 Score=18.08 Aligned_cols=6 Identities=67% Similarity=1.564 Sum_probs=2.7
Q ss_pred cccCCC
Q 039061 390 PLLFPD 395 (399)
Q Consensus 390 P~i~pd 395 (399)
|++|||
T Consensus 23 picfpd 28 (31)
T 2ab9_A 23 PICFPD 28 (31)
T ss_dssp CSSSSC
T ss_pred CcccCC
Confidence 444444
No 9
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=5.23 E-value=1.4e+02 Score=18.41 Aligned_cols=12 Identities=33% Similarity=1.196 Sum_probs=7.8
Q ss_pred chhh---hhhcccCC
Q 039061 7 CCAS---LTCGLCSS 18 (399)
Q Consensus 7 c~g~---a~c~~c~~ 18 (399)
|||+ |+|.-|+|
T Consensus 2 ccg~ypnaachpc~c 16 (31)
T 1pqr_A 2 CCGPYPNAACHPCGC 16 (31)
T ss_dssp CCCSSSSSSCCTTCS
T ss_pred CcCCCCCcccccccc
Confidence 5664 67777764
No 10
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=4.71 E-value=3.5e+02 Score=17.13 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=13.4
Q ss_pred eehhhhHHHHHHHHH
Q 039061 369 VWVRICSQWVTAGLY 383 (399)
Q Consensus 369 ~WVKi~ssW~~~~LY 383 (399)
.|.+-+=.|+|-.||
T Consensus 3 swL~~iwdWvctvLs 17 (31)
T 1r7c_A 3 SWLRDIWDWICEVLS 17 (31)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 588899999999997
Done!