Query 039061
Match_columns 399
No_of_seqs 115 out of 444
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 09:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 7.8 59 0.0043 25.9 1.1 30 146-175 89-118 (144)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 7.0 7.2E+02 0.052 21.9 14.3 60 96-155 390-461 (472)
3 d1dl0a_ g.3.6.2 (A:) J-atracot 5.2 1E+02 0.0075 18.1 0.9 10 12-21 9-19 (37)
4 d2gnoa1 a.80.1.1 (A:209-306) g 4.1 1.8E+02 0.013 20.5 1.8 27 132-158 21-49 (98)
5 d1ffta_ f.24.1.1 (A:) Cytochro 4.1 3.9E+02 0.029 24.7 4.9 34 132-165 436-469 (501)
6 d1vjja4 d.3.1.4 (A:141-461) Tr 3.9 44 0.0032 30.1 -2.3 13 162-174 189-201 (321)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 3.9 3.7E+02 0.027 15.9 2.8 17 143-159 7-23 (36)
8 d1g0da4 d.3.1.4 (A:141-461) Tr 3.8 46 0.0033 30.0 -2.3 13 162-174 191-203 (321)
9 d1ex0a4 d.3.1.4 (A:191-510) Tr 3.8 47 0.0034 29.9 -2.3 14 162-175 182-195 (320)
10 d1nekc_ f.21.2.2 (C:) Succinat 3.5 3E+02 0.022 20.3 2.8 15 76-91 27-41 (129)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.80 E-value=59 Score=25.88 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 039061 146 GAGLFLLVQVIILLDGVHTWNDAWVAKDEQ 175 (399)
Q Consensus 146 ga~~FiliQlIllvDFa~~wne~wv~~~e~ 175 (399)
++.+|+++-.-+-=+--|+.++-|.++..+
T Consensus 89 s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~e 118 (144)
T d1v54d_ 89 TALLLIWEKHYVYGPIPHTFEEEWVAKQTK 118 (144)
T ss_dssp HHHHHHHHHHHTCCCCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 344555544433334678899999876544
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.01 E-value=7.2e+02 Score=21.91 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=29.7
Q ss_pred HhhcccCCCc--cch-hcccchHHHHHHHHHHHhheeeecc--cchh-------hHHHHHHHhhHHHHHHHH
Q 039061 96 MIGIKDQNDK--RDS-WHHGGWCAKIIIWALLVVLMFFLPN--VVIS-------IYETISKFGAGLFLLVQV 155 (399)
Q Consensus 96 ~i~v~~s~d~--Ra~-i~nG~W~~K~l~~~~l~i~~FfIP~--~~f~-------~y~~i~~~ga~~FiliQl 155 (399)
.+..|+.+.+ |.. ++|-+|..=+++-+++.+...++|. ..|. .|.....++...+++.|+
T Consensus 390 ~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El 461 (472)
T d1wpga4 390 ALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEI 461 (472)
T ss_dssp HHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455555442 333 3554454455555555666667886 2232 344444444445555554
No 3
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=5.16 E-value=1e+02 Score=18.13 Aligned_cols=10 Identities=20% Similarity=0.776 Sum_probs=4.6
Q ss_pred hhcccC-CCCC
Q 039061 12 TCGLCS-SVAS 21 (399)
Q Consensus 12 ~c~~c~-~~~~ 21 (399)
+|..|| |||.
T Consensus 9 pcaaccpccpg 19 (37)
T d1dl0a_ 9 PCAACCPCCPG 19 (37)
T ss_dssp BCCSSCCCCTT
T ss_pred ccccccCCCCC
Confidence 444444 4553
No 4
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=4.14 E-value=1.8e+02 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=18.0
Q ss_pred cccchhhHHHHH--HHhhHHHHHHHHHHH
Q 039061 132 PNVVISIYETIS--KFGAGLFLLVQVIIL 158 (399)
Q Consensus 132 P~~~f~~y~~i~--~~ga~~FiliQlIll 158 (399)
|.+||..+-.+. ..|--.|+|||-+.=
T Consensus 21 ~k~ff~lfdqv~ntitg~daflliq~~~r 49 (98)
T d2gnoa1 21 SKEFFALFDQVTNTITGKDAFLLIQRLTR 49 (98)
T ss_dssp GGGHHHHHHHHHHHSCTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 677887665443 345559999997543
No 5
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=4.10 E-value=3.9e+02 Score=24.66 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=28.7
Q ss_pred cccchhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 039061 132 PNVVISIYETISKFGAGLFLLVQVIILLDGVHTW 165 (399)
Q Consensus 132 P~~~f~~y~~i~~~ga~~FiliQlIllvDFa~~w 165 (399)
||..+..|..++-+|+.++.+-+++.++++..++
T Consensus 436 ~~~~~~~~~~~~~~g~~i~~~~~~~f~~~~~~s~ 469 (501)
T d1ffta_ 436 IDPQFHTMLMIAASGAVLIALGILCLVIQMYVSI 469 (501)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667888999999999999999999988776
No 6
>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=3.93 E-value=44 Score=30.05 Aligned_cols=13 Identities=31% Similarity=1.219 Sum_probs=11.5
Q ss_pred HHHHHHHhhhccc
Q 039061 162 VHTWNDAWVAKDE 174 (399)
Q Consensus 162 a~~wne~wv~~~e 174 (399)
.|.|||.|+.|-|
T Consensus 189 FHvWnE~WM~RpD 201 (321)
T d1vjja4 189 FHVWNEGWFVRSD 201 (321)
T ss_dssp EEEEEEEEECCTT
T ss_pred eeccceeeecccc
Confidence 4889999999887
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.86 E-value=3.7e+02 Score=15.91 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=12.1
Q ss_pred HHHhhHHHHHHHHHHHH
Q 039061 143 SKFGAGLFLLVQVIILL 159 (399)
Q Consensus 143 ~~~ga~~FiliQlIllv 159 (399)
|.+...+|+++-.+.|+
T Consensus 7 g~iAt~LFilvPt~FLl 23 (36)
T d2axtm1 7 GLIATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55677788888766554
No 8
>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}
Probab=3.85 E-value=46 Score=29.96 Aligned_cols=13 Identities=23% Similarity=1.188 Sum_probs=11.7
Q ss_pred HHHHHHHhhhccc
Q 039061 162 VHTWNDAWVAKDE 174 (399)
Q Consensus 162 a~~wne~wv~~~e 174 (399)
.|.|||.|+.|-|
T Consensus 191 fHvWnE~WM~RpD 203 (321)
T d1g0da4 191 FHCWVESWMSRED 203 (321)
T ss_dssp EEEEEEEEECCTT
T ss_pred ecccceeeeeccc
Confidence 4899999999887
No 9
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Probab=3.78 E-value=47 Score=29.89 Aligned_cols=14 Identities=36% Similarity=1.118 Sum_probs=12.1
Q ss_pred HHHHHHHhhhcccc
Q 039061 162 VHTWNDAWVAKDEQ 175 (399)
Q Consensus 162 a~~wne~wv~~~e~ 175 (399)
.|.|||.|+.|-|-
T Consensus 182 FHvWnE~WM~RpDL 195 (320)
T d1ex0a4 182 YHCWNEAWMTRPDL 195 (320)
T ss_dssp EEEEEEEEECCTTS
T ss_pred eeeceeeeeccccc
Confidence 59999999998873
No 10
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=3.47 E-value=3e+02 Score=20.31 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=9.0
Q ss_pred chhhhhhhhHHHHHHH
Q 039061 76 QAVLRVSLGNFLFFGI 91 (399)
Q Consensus 76 ~aVyRvsfal~~Ff~l 91 (399)
+..||++ |.++|+.+
T Consensus 27 SI~HRis-Gv~l~~~~ 41 (129)
T d1nekc_ 27 SILHRVS-GVITFVAV 41 (129)
T ss_dssp HHHHHHH-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHHH
Confidence 4578988 44444443
Done!