BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039062
(871 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 339/890 (38%), Positives = 493/890 (55%), Gaps = 44/890 (4%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
++ DDIVP V+PFI+E+I PDWR R+AA AFGSILEGP P++L +V A+ ++
Sbjct: 355 LSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAE 475
L KDP+ V+DTTAWT+GRI E L + I + ++ L++ + P VA
Sbjct: 415 E-LMKDPSVVVRDTTAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRVAS 468
Query: 476 KACGALYFLAQG-YE--DVG-----PSS-PLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526
C A LA+ YE DV P++ L+ F+ IVQ LL T R D ++ LR++A
Sbjct: 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528
Query: 527 YETLNEVVRSSTDETAPMVLQLVPVIMMELHKTL--EGQKLSSDEREKQGEXXXXXXXXX 584
YE+L E+V++S + P V + VIM L + L E S+ +R + +
Sbjct: 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588
Query: 585 XVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF--ACRSATVHEEXXXXXXXXXXXXXXDF 642
+++K+ + +Q +D +M LR+F S V E+ +F
Sbjct: 589 QNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF 643
Query: 643 AKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSN 702
KYM F +L +GL+N+ EYQVC VG+VGD+CRAL+ ILP+CD +M LL++L +
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNE 703
Query: 703 QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSL 762
+HRSVKP I S FGDIALAIG F+KYL + LQ A+ A D DM +Y N L
Sbjct: 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDFDMVDYLNEL 761
Query: 763 RNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGL 817
R LEAY+GI QG K P L+ P IL F+D + ++D + V+ A GL
Sbjct: 762 RESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGL 821
Query: 818 LGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867
+GDL G + L++ + L E SK + K A WA + K
Sbjct: 822 IGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 545 bits (1405), Expect = e-155, Method: Compositional matrix adjust.
Identities = 337/890 (37%), Positives = 491/890 (55%), Gaps = 44/890 (4%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L+TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
+A DDIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAE 475
L KDP+ V+DT AWT+GRI E L + I + ++ L++ + P VA
Sbjct: 415 E-LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRVAS 468
Query: 476 KACGALYFLAQG-YE--DVG-----PSS-PLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526
C A LA+ YE DV P++ L+ F+ IVQ LL T R D ++ LR++A
Sbjct: 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528
Query: 527 YETLNEVVRSSTDETAPMVLQLVPVIMMELHKTL--EGQKLSSDEREKQGEXXXXXXXXX 584
YE+L E+V++S + P V + VIM L + L E S+ +R + +
Sbjct: 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588
Query: 585 XVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF--ACRSATVHEEXXXXXXXXXXXXXXDF 642
+++K+ + +Q +D +M LR+F S V E+ +F
Sbjct: 589 QNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF 643
Query: 643 AKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSN 702
KYM F +L +GL+N+ EYQVC VG+VGD+CRAL+ I+P+CD +M LL++L +
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703
Query: 703 QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSL 762
+HRSVKP I S FGDIALAIG F+KYL + LQ A+ A D DM +Y N L
Sbjct: 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDYDMVDYLNEL 761
Query: 763 RNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGL 817
R LEAY+GI QG K P L+ P IL F+D + ++D + V+ A GL
Sbjct: 762 RESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGL 821
Query: 818 LGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867
+GDL G + L++ + L E SK + K A WA + K
Sbjct: 822 IGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 544 bits (1402), Expect = e-155, Method: Compositional matrix adjust.
Identities = 337/890 (37%), Positives = 490/890 (55%), Gaps = 44/890 (4%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
+A DDIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAE 475
L KDP+ V+DT AWT+GRI E L + I + ++ L++ + P VA
Sbjct: 415 E-LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRVAS 468
Query: 476 KACGALYFLAQG-YE--DVG-----PSS-PLTPFFQEIVQSLLTVTHREDAGESRLRTAA 526
C A LA+ YE DV P++ L+ F+ IVQ LL T R D ++ LR++A
Sbjct: 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSA 528
Query: 527 YETLNEVVRSSTDETAPMVLQLVPVIMMELHKTL--EGQKLSSDEREKQGEXXXXXXXXX 584
YE+L E+V++S + P V + VIM L + L E S+ +R + +
Sbjct: 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATL 588
Query: 585 XVIIQKLGSSEPTKYVFMQYADQIMGLFLRVF--ACRSATVHEEXXXXXXXXXXXXXXDF 642
+++K+ + +Q +D +M LR+F S V E+ +F
Sbjct: 589 QNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEF 643
Query: 643 AKYMPDFYKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSN 702
KYM F +L +GL+N+ EYQVC VG+VGD+CRAL+ I+P+CD +M LL++L +
Sbjct: 644 LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNE 703
Query: 703 QLHRSVKPPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSL 762
+HRSVKP I S FGDIALAIG F+KYL + LQ A+ A D DM +Y N L
Sbjct: 704 NVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDYDMVDYLNEL 761
Query: 763 RNGILEAYSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGL 817
R LEAY+GI QG K P L+ P IL F+D + ++D + V+ A GL
Sbjct: 762 RESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGL 821
Query: 818 LGDLADTLGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867
+GDL G + L++ + L E SK + K A WA + K
Sbjct: 822 IGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 871
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 290/763 (38%), Positives = 416/763 (54%), Gaps = 43/763 (5%)
Query: 130 PELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGMNASE 187
PELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++QGM E
Sbjct: 2 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEE 60
Query: 188 MNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSIS 247
+N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA + LV I
Sbjct: 61 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 120
Query: 248 STYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGSDFTGNS 306
S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E S+
Sbjct: 121 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-ASEAAEQG 179
Query: 307 DIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVARTVGD 362
P FY WN A G CL L+A D
Sbjct: 180 RPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 236
Query: 363 DIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDP 422
DIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++ L KDP
Sbjct: 237 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-LMKDP 295
Query: 423 NNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGALY 482
+ V+DT AWT+GRI E L + I + ++ L++ + P VA C A
Sbjct: 296 SVVVRDTAAWTVGRICELLPEAAINDVYLAP-----LLQCLIEGLSAEPRVASNVCWAFS 350
Query: 483 FLAQG-YE--DVG-----PSS-PLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEV 533
LA+ YE DV P++ L+ F+ IVQ LL T R D ++ LR++AYE+L E+
Sbjct: 351 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI 410
Query: 534 VRSSTDETAPMVLQLVPVIMMELHKTL--EGQKLSSDEREKQGEXXXXXXXXXXVIIQKL 591
V++S + P V + VIM L + L E S+ +R + + +++K+
Sbjct: 411 VKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV 470
Query: 592 GSSEPTKYVFMQYADQIMGLFLRVF--ACRSATVHEEXXXXXXXXXXXXXXDFAKYMPDF 649
+ +Q +D +M LR+F S V E+ +F KYM F
Sbjct: 471 QHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 525
Query: 650 YKYLEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVK 709
+L +GL+N+ EYQVC VG+VGD+CRAL+ I+P+CD +M LL++L + +HRSVK
Sbjct: 526 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVK 585
Query: 710 PPIFSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEA 769
P I S FGDIALAIG F+KYL + LQ A+ A D DM +Y N LR LEA
Sbjct: 586 PQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS--QAQVDKSDYDMVDYLNELRESCLEA 643
Query: 770 YSGIFQGFKNS-----PKTQLLIPYAPHILQFLDSMYMEKDMDELVMKTAIGLLGDLADT 824
Y+GI QG K P L+ P IL F+D + ++D + V+ A GL+GDL
Sbjct: 644 YTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTA 703
Query: 825 LGSNAGSLIQQSLTSKDFLNECLSSKDHMIKESAEWARLAINK 867
G + L++ + L E SK + K A WA + K
Sbjct: 704 FGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLATWATKELRK 746
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 270/874 (30%), Positives = 425/874 (48%), Gaps = 41/874 (4%)
Query: 4 EVTQVLLNA-QSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
E Q+L N+ S D +R +E LK+ N F S L +++ ++ R LA L
Sbjct: 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALT 64
Query: 63 LKNALDAKEQHRKFELVQRWLS-LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAG 121
LKN L +K+ + + QRW++ + K QIKT L L S + ++Q+IA +A
Sbjct: 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD 124
Query: 122 IELPQKQWPELIVSLLSNV-HQLPAHVKQATLETLGYLCEEVSPDVVEQDHV---NKILT 177
IELP WPEL+ ++ N + P +VK+A+L LGY+CE P Q V N IL
Sbjct: 125 IELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ--SQALVSSSNNILI 182
Query: 178 AVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQ 237
A+VQG ++E + VRLAA AL ++L F + N + ER+Y+M+VVCEATQ+ +++++
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242
Query: 238 AAFECLVSISSTYYEKLAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILE 296
AAF CL I S YY + PYM Q +Y++T ++ + VA +EFWS+IC+EEIDI
Sbjct: 243 AAFGCLCKIMSLYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302
Query: 297 EYGSDFTGNSDIPCFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLV 356
E S + + F WN++M+ G CL L
Sbjct: 303 ELAQ--FPQSPLQSYNF--ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358
Query: 357 ARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLS 416
A+ G+ I+ V+ F+E+NI +WR REAA AFGSI++GP + + V+ AL +L+
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418
Query: 417 ALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEK 476
L D + VK+TTAW +GRI ++ I Q + ++ L ++D P VA
Sbjct: 419 -LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQACLIGLQDHPKVATN 472
Query: 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536
+ L + + P SP+ F+ +V L+ +R D E R +A+ L +V
Sbjct: 473 CSWTIINLVEQLAEATP-SPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTMVEY 530
Query: 537 STDETAPMVLQLVPVIMMELHKTL--EGQKLSSDEREKQGEXXXXXXXXXXVIIQKLGSS 594
+TD A + +M +L +T+ + +L+ ++ + E +I+K SS
Sbjct: 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590
Query: 595 -EPTKYVFMQYADQIMGLFLRVFACR-SATVHEEXXXXXXXXXXXXXXDFAKYMPDFYKY 652
EP AD +MGLF R+ + SA + ++ F KY+ F Y
Sbjct: 591 VEPV-------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643
Query: 653 LEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPI 712
L L + V VG + DI +LEE Y D +M L + +S+ R +KP +
Sbjct: 644 LLKALNQVDS-PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV 702
Query: 713 FSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSG 772
S FGDIA IG +F YL M + +A + + + +Y + +L+AY G
Sbjct: 703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAYVG 760
Query: 773 IFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDM--DELVMKTAIGLLGDLADTLGSNAG 830
I G + P+ L PY I QF+ + + + ++ + A+GL+GD+A +
Sbjct: 761 IVAGLHDKPEA--LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818
Query: 831 SLIQQSLTSKDFLNECLSSK--DHMIKESAEWAR 862
D++ S + K++A WAR
Sbjct: 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAR 852
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust.
Identities = 271/874 (31%), Positives = 420/874 (48%), Gaps = 41/874 (4%)
Query: 4 EVTQVLLNA-QSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
E Q+L N+ S D +R +E LK+ N F S L +++ ++ R LA L
Sbjct: 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALT 64
Query: 63 LKNALDAKEQHRKFELVQRWLS-LDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAG 121
LKN L +K+ + + QRW++ + K QIKT L L S + ++Q+IA +A
Sbjct: 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD 124
Query: 122 IELPQKQWPELIVSLLSNV-HQLPAHVKQATLETLGYLCEEVSPDVVEQDHV---NKILT 177
IELP WPEL+ ++ N + P +VK+A+L LGY+CE P Q V N IL
Sbjct: 125 IELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ--SQALVSSSNNILI 182
Query: 178 AVVQGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQ 237
A+VQG ++E + VRLAA AL ++L F + N + ER+Y+M+VVCEATQ+ +++++
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA 242
Query: 238 AAFECLVSISSTYYEKLAPYM-QDIYSITAKAVREDEEPVALQAIEFWSSICDEEIDILE 296
AAF CL I S YY + PYM Q +Y++T ++ + VA +EFWS+IC+EEIDI
Sbjct: 243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302
Query: 297 EYGSDFTGNSDIPCFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLV 356
E S + + F WN++M+ G CL L
Sbjct: 303 ELAQ--FPQSPLQSYNF--ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358
Query: 357 ARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLS 416
A+ G+ I+ V+ F+E+NI +WR REAA AFGSI++GP + + V+ AL +L+
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418
Query: 417 ALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEK 476
L D + VK+TTAW +GRI ++ I Q + ++ L ++D P VA
Sbjct: 419 -LMNDQSLQVKETTAWCIGRI-----ADSVAESIDPQQHLPGVVQACLIGLQDHPKVATN 472
Query: 477 ACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHREDAGESRLRTAAYETLNEVVRS 536
+ L + + P SP+ F+ +V L+ +R D E R +A+ L +V
Sbjct: 473 CSWTIINLVEQLAEATP-SPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTMVEY 530
Query: 537 STDETAPMVLQLVPVIMMELHKTL---EGQKLSSDEREKQGEXXXXXXXXXXVIIQKLGS 593
+TD A + +M +L +T+ E Q D + Q VI + S
Sbjct: 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590
Query: 594 SEPTKYVFMQYADQIMGLFLRVFACR-SATVHEEXXXXXXXXXXXXXXDFAKYMPDFYKY 652
EP AD +MGLF R+ + SA + ++ F KY+ F Y
Sbjct: 591 VEPV-------ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643
Query: 653 LEMGLQNFEEYQVCAVTVGVVGDICRALEEKILPYCDGIMTQLLKDLSSNQLHRSVKPPI 712
L L + V VG + DI +LEE Y D +M L + +S+ R +KP +
Sbjct: 644 LLKALNQVDS-PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAV 702
Query: 713 FSCFGDIALAIGENFEKYLMYAMPMLQSAADLSAHTANVDDDMTEYTNSLRNGILEAYSG 772
S FGDIA IG +F YL M + +A + + + +Y + +L+AY G
Sbjct: 703 LSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTL--EALDYQIKVLEAVLDAYVG 760
Query: 773 IFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDM--DELVMKTAIGLLGDLADTLGSNAG 830
I G + P+ L PY I QF+ + + + ++ + A+GL+GD+A +
Sbjct: 761 IVAGLHDKPEA--LFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818
Query: 831 SLIQQSLTSKDFLNECLSSK--DHMIKESAEWAR 862
D++ S + K++A WAR
Sbjct: 819 KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAR 852
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 197/495 (39%), Positives = 287/495 (57%), Gaps = 20/495 (4%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
+A DDIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAE 475
L KDP+ V+DT AWT+GRI E L + I + ++ L++ + P VA
Sbjct: 415 E-LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA-----PLLQCLIEGLSAEPRVAS 468
Query: 476 KACGALYFLAQ-GYE 489
C A LA+ YE
Sbjct: 469 NVCWAFSSLAEAAYE 483
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 270/452 (59%), Gaps = 14/452 (3%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
+A DDIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG 447
L KDP+ V+DT AWT+GRI E L + I
Sbjct: 415 E-LMKDPSVVVRDTAAWTVGRICELLPEAAIN 445
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/446 (41%), Positives = 269/446 (60%), Gaps = 14/446 (3%)
Query: 3 MEVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLI 62
ME+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL
Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60
Query: 63 LKNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI 122
+KN+L +K+ K + QRWL++DAN + ++K +L+TL T S++SQ +A +A
Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTL-GTETYRPSSASQCVAGIACA 119
Query: 123 ELPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVV 180
E+P QWPELI L++NV + H+K++TLE +GY+C+++ P+ + QD N+ILTA++
Sbjct: 120 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAII 178
Query: 181 QGMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAF 240
QGM E +N+V+LAAT AL N+L F +ANF + ER +IM+VVCEATQ + ++R AA
Sbjct: 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238
Query: 241 ECLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYG 299
+ LV I S YY+ + YM +++IT +A++ D + VALQ IEFWS++CDEE+D+ E
Sbjct: 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE-A 297
Query: 300 SDFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGL 355
S+ P FY WN A G CL L
Sbjct: 298 SEAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 356 VARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFML 415
+A DDIVP V+PFI+E+I PDWR R+AA AFG ILEGP P +L +V A+ ++
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 416 SALTKDPNNHVKDTTAWTLGRIFEFL 441
L KDP+ V+DT AWT+GRI E L
Sbjct: 415 E-LMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 312 bits (800), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 184/451 (40%), Positives = 264/451 (58%), Gaps = 14/451 (3%)
Query: 4 EVTQVLLNAQSIDGTVRKHAEESLKQFQEQNLPSFLLSLSGELANDDKPVDSRKLAGLIL 63
E+ +L S D + A++ L++ +NLP+FL+ LS LAN +R AGL +
Sbjct: 8 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 67
Query: 64 KNALDAKEQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIE 123
KN+L +K+ K + QRWL++DAN + ++K +L TL T S++SQ +A +A E
Sbjct: 68 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTL-GTETYRPSSASQCVAGIACAE 126
Query: 124 LPQKQWPELIVSLLSNVHQLPA--HVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQ 181
+P QWPELI L++NV + H K++TLE +GY+C+++ P+ + QD N+ILTA++Q
Sbjct: 127 IPVSQWPELIPQLVANVTNPNSTEHXKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 185
Query: 182 GMNASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFE 241
G E +N+V+LAAT AL N+L F +ANF + ER +I +VVCEATQ + ++R AA +
Sbjct: 186 GXRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIXQVVCEATQCPDTRVRVAALQ 245
Query: 242 CLVSISSTYYEKLAPYMQD-IYSITAKAVREDEEPVALQAIEFWSSICDEEIDILEEYGS 300
LV I S YY+ Y +++IT +A + D + VALQ IEFWS++CDEE D+ E S
Sbjct: 246 NLVKIXSLYYQYXETYXGPALFAITIEAXKSDIDEVALQGIEFWSNVCDEEXDLAIE-AS 304
Query: 301 DFTGNSDIP----CFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLV 356
+ P FY WN A G CL L+
Sbjct: 305 EAAEQGRPPEHTSKFY---AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLXLL 361
Query: 357 ARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLS 416
+ DDIVP V+PFI+E+I PDWR R+AA AFGSILEGP P++L +V A ++
Sbjct: 362 STCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQLKPLVIQAXPTLIE 421
Query: 417 ALTKDPNNHVKDTTAWTLGRIFEFLHGSTIG 447
L KDP+ V+DTTAWT+GRI E L + I
Sbjct: 422 -LXKDPSVVVRDTTAWTVGRICELLPEAAIN 451
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/524 (21%), Positives = 217/524 (41%), Gaps = 69/524 (13%)
Query: 12 AQSIDGTVRKHAEESLKQF-QEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + ++L+ + +L ++D+P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI-ELPQKQW 129
Q + V IK+ LN + + R+T +I +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGM------ 183
P+L+ L S + + + L +CE+ S ++++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 184 -------NASEMNNDVRLAATRALYNAL-SFAQANFSNDMERDYIMRVVCEATQSAELKI 235
+A N ++ T+AL + SF + F+ E ++
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA--------------LAGDEEPEV 231
Query: 236 RQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEI--D 293
R+ LV + ++L P+M +I + ++ +E VAL+A EFW ++ ++ I D
Sbjct: 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291
Query: 294 ILEEYGSDFT-------GNSDIPCFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIA 346
+L + SDI WN+
Sbjct: 292 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIGGSGGSGDTISDWNLR 351
Query: 347 MAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHI 406
L ++A D+++P ++P ++E + +W +E+ G+I EG + ++
Sbjct: 352 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 411
Query: 407 VNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQS 466
+ + ++ L+ D V+ T WTL R + H P + ++T LL+
Sbjct: 412 PEL-IPHLIQCLS-DKKALVRSITCWTLSR---YAHWVVSQPP---DTYLKPLMTELLKR 463
Query: 467 MKDT-PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509
+ D+ V E AC A L + + L P+ I+ +L+
Sbjct: 464 ILDSNKRVQEAACSAFATLEE-----EACTELVPYLAYILDTLV 502
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/516 (20%), Positives = 214/516 (41%), Gaps = 66/516 (12%)
Query: 12 AQSIDGTVRKHAEESLKQF-QEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + ++L+ + +L ++D+P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI-ELPQKQW 129
Q + V IK+ LN + + R+T +I +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGM------ 183
P+L+ L S + + + L +CE+ S ++++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 184 -------NASEMNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIR 236
+A N ++ T+AL + D + + E ++R
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALM-------------LHIDSFIENLFALAGDEEPEVR 232
Query: 237 QAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEI--DI 294
+ LV + ++L P+M +I + ++ +E VAL+A EFW ++ ++ I D+
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 295 LEEYGSDFTGNSDIPCFYFIXXXXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLG 354
L + IP WN+ L
Sbjct: 293 LVRHLPKL-----IPVLVN-GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346
Query: 355 LVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFM 414
++A D+++P ++P ++E + +W +E+ G+I EG + ++ + + +
Sbjct: 347 VLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL-IPHL 405
Query: 415 LSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDT-PNV 473
+ L+ D V+ T WTL R + H P + ++T LL+ + D+ V
Sbjct: 406 IQCLS-DKKALVRSITCWTLSR---YAHWVVSQPP---DTYLKPLMTELLKRILDSNKRV 458
Query: 474 AEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509
E AC A L + + L P+ I+ +L+
Sbjct: 459 QEAACSAFATLEE-----EACTELVPYLAYILDTLV 489
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 135/297 (45%), Gaps = 46/297 (15%)
Query: 12 AQSIDGTVRKHAEESLKQF-QEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + ++L+ + +L ++D+P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI-ELPQKQW 129
Q + V IK+ LN + + R+T +I +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGM------ 183
P+L+ L S + + + L +CE+ S ++++ D +++ L ++
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFFKH 185
Query: 184 -------NASEMNNDVRLAATRALYNAL-SFAQANFSNDMERDYIMRVVCEATQSAELKI 235
+A N ++ T+AL + SF + F+ E ++
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA--------------LAGDEEPEV 231
Query: 236 RQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEI 292
R+ LV + ++L P+M +I + ++ +E VAL+A EFW ++ ++ I
Sbjct: 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 343 WNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402
WN+ L ++A D+++P ++P ++E + +W +E+ G+I EG
Sbjct: 373 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 432
Query: 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462
+ ++ + + ++ L+ D V+ T WTL R + H P + ++T
Sbjct: 433 IPYLPEL-IPHLIQCLS-DKKALVRSITCWTLSR---YAHWVVSQPP---DTYLKPLMTE 484
Query: 463 LLQSMKDT-PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509
LL+ + D+ V E AC A L + + L P+ I+ +L+
Sbjct: 485 LLKRILDSNKRVQEAACSAFATLEE-----EACTELVPYLAYILDTLV 527
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 133/297 (44%), Gaps = 46/297 (15%)
Query: 12 AQSIDGTVRKHAEESLKQF-QEQNLPSFLLSLSGELANDDKPVDSRKLAGLILKNALDAK 70
+QS D T+++ ++ L+Q Q + ++L+ + +L ++D+P +R L+GLILKN + A
Sbjct: 22 SQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLILKNNVKAH 79
Query: 71 EQHRKFELVQRWLSLDANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGI-ELPQKQW 129
Q + V IK+ LN + + R+T +I +A EL + W
Sbjct: 80 FQ-----------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL--QNW 126
Query: 130 PELIVSLLSNVHQLPAHVKQATLETLGYLCEEVSPDVVEQDHVNKILTAVVQGM------ 183
P+L+ L S + + + L +CE+ S ++++ D +++ L +
Sbjct: 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIXIPKFLQFFKH 185
Query: 184 -------NASEMNNDVRLAATRALYNAL-SFAQANFSNDMERDYIMRVVCEATQSAELKI 235
+A N ++ T+AL + SF + F+ E ++
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALXLHIDSFTENLFA--------------LAGDEEPEV 231
Query: 236 RQAAFECLVSISSTYYEKLAPYMQDIYSITAKAVREDEEPVALQAIEFWSSICDEEI 292
R+ LV + ++L P+ +I + ++ +E VAL+A EFW ++ ++ I
Sbjct: 232 RKNVCRALVXLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPI 288
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 14/168 (8%)
Query: 343 WNIAMAGGTCLGLVARTVGDDIVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDK 402
WN+ L ++A D+++P ++P ++E + +W +E+ G+I EG
Sbjct: 373 WNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCXQGX 432
Query: 403 LLHIVNVALSFMLSALTKDPNNHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITV 462
+ ++ + + ++ L+ D V+ T WTL R ++ T + + + T
Sbjct: 433 IPYLPEL-IPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYL------KPLXTE 484
Query: 463 LLQSMKDT-PNVAEKACGALYFLAQGYEDVGPSSPLTPFFQEIVQSLL 509
LL+ + D+ V E AC A L + + L P+ I+ +L+
Sbjct: 485 LLKRILDSNKRVQEAACSAFATLEE-----EACTELVPYLAYILDTLV 527
>pdb|1VRQ|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96 In Complex With Folinic
Acid
pdb|1X31|B Chain B, Crystal Structure Of Heterotetrameric Sarcosine Oxidase
From Corynebacterium Sp. U-96
pdb|3AD7|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Methylthio Acetate
pdb|3AD8|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Pyrrole 2-Carboxylate
pdb|3AD9|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 Sarcosine-Reduced Form
Length = 404
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 86 DANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWP--ELIVSLLSNVH 141
D T +KT L VA A + S V+A++AG ELP + P L+ L VH
Sbjct: 202 DGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVH 259
>pdb|3ADA|B Chain B, Heterotetrameric Sarcosine Oxidase From Corynebacterium
Sp. U-96 In Complex With Sulfite
Length = 399
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 86 DANVKTQIKTCLLNTLTSTVADARSTSSQVIAKVAGIELPQKQWP--ELIVSLLSNVH 141
D T +KT L VA A + S V+A++AG ELP + P L+ L VH
Sbjct: 197 DGEKVTGVKTTRGTILAGKVALAGAGHSSVLAELAGFELPIQSHPLQALVSELFEPVH 254
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 85 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 140
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 141 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 193
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 194 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 229
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 87 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 142
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 143 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 195
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 196 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 231
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 101 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 156
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 157 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 209
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 210 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 245
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 101 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 156
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 157 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 209
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 210 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 245
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 101 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 156
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 157 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 209
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 210 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 245
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 77 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 132
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 133 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 185
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 186 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 221
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYE 252
RLA + AL + N + D I ++ E +++ + + +C+ +IS
Sbjct: 211 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 270
Query: 253 KLAPYMQDIYSITAKAVREDEEPV---ALQAIEFWSSICDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 271 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 313
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 46 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 101
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 102 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 154
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 155 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 190
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 50 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 105
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 106 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 158
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 159 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 194
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 46 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 101
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 102 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 154
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 155 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 190
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 57 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 112
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 113 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 165
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 166 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 201
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 51 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 106
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 107 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 159
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 160 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 195
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 50 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 105
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 106 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 158
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 159 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 194
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 51 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 106
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 107 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALL-----AVPDLSTLACGYLRN 159
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 160 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 195
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 193 RLAATRALYNALSFAQANFSNDMERDYIMRVVCEATQSAELKIRQAAFECLVSISSTYYE 252
RLA + AL + N + D I ++ E +++ + + +C+ +IS
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 253 KLAPYMQDIYSITAKAVREDEEPV---ALQAIEFWSSICDEEI 292
++ Y++ I + K D++ + +QA E + C +E+
Sbjct: 248 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 51 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 106
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 107 AHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 159
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 160 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 195
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ + P Q E+A +A +I G S + A+ +S L P+
Sbjct: 120 LIPKFVSFLGKTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPH 175
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 176 AHISEQAVWALGNIAG--AGSAFRDLVIKHGAIDPLLALLA-----VPDLSTLACGYLRN 228
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ PL ++I+ +L+ + H D
Sbjct: 229 LTWTLSNLCRNKNPAPPLDA-VEQILPTLVRLLHHND 264
>pdb|3MKP|A Chain A, Crystal Structure Of 1k1 Mutant Of Hepatocyte Growth
FactorSCATTER Factor Fragment Nk1 In Complex With
Heparin
pdb|3MKP|B Chain B, Crystal Structure Of 1k1 Mutant Of Hepatocyte Growth
FactorSCATTER Factor Fragment Nk1 In Complex With
Heparin
pdb|3MKP|C Chain C, Crystal Structure Of 1k1 Mutant Of Hepatocyte Growth
FactorSCATTER Factor Fragment Nk1 In Complex With
Heparin
pdb|3MKP|D Chain D, Crystal Structure Of 1k1 Mutant Of Hepatocyte Growth
FactorSCATTER Factor Fragment Nk1 In Complex With
Heparin
Length = 183
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 754 DMTEYTNSLRNGIL---EAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDE 808
D+ E + +RN I+ E+Y G K+ K Q PH FL S Y KD+ E
Sbjct: 90 DLYENKDYIRNCIIGEGESYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQE 147
>pdb|3HN4|A Chain A, Crystal Structure Of The Nk2 Fragment (28-289) Of Human
Hepatocyte Growth FactorSCATTER FACTOR
Length = 264
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 754 DMTEYTNSLRNGIL---EAYSGIFQGFKNSPKTQLLIPYAPHILQFLDSMYMEKDMDE 808
D+ E + +RN I+ E+Y G K+ K Q PH FL S Y KD+ E
Sbjct: 92 DLYENKDYIRNCIIGEGESYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQE 149
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 364 IVPLVIPFIEENIAKPDWRQREAATYAFGSILEGPSPDKLLHIVNVALSFMLSALTKDPN 423
++P + F+ P Q E+A +A +I G S + A+ +S L P+
Sbjct: 52 LIPKFVSFLGRTDCSP--IQFESA-WALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PH 107
Query: 424 NHVKDTTAWTLGRIFEFLHGSTIGTPIITQANCQQIITVLLQSMKDTPNVAEKACGAL-- 481
H+ + W LG I GS +I ++ +L P+++ ACG L
Sbjct: 108 AHISEQAVWALGNIAG--DGSVFRDLVIKYGAVDPLLALLA-----VPDMSSLACGYLRN 160
Query: 482 --YFLAQGYEDVGPSSPLTPFFQEIVQSLLTVTHRED 516
+ L+ + P+ P+ ++I+ +L+ + H +D
Sbjct: 161 LTWTLSNLCRNKNPAPPIDA-VEQILPTLVRLLHHDD 196
>pdb|3KW3|A Chain A, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
pdb|3KW3|B Chain B, Crystal Structure Of Alanine Racemase From Bartonella
Henselae With Covalently Bound Pyridoxal Phosphate
Length = 376
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 163 SPDVVEQDHVNKILTAVVQGMNASEMNNDVRLAATRALYNALSFAQANFSN 213
+P + E+ + IL+ + G +AS +N+ +LAA + + L + +F+N
Sbjct: 164 NPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFAN 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,103,680
Number of Sequences: 62578
Number of extensions: 818329
Number of successful extensions: 2310
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2147
Number of HSP's gapped (non-prelim): 95
length of query: 871
length of database: 14,973,337
effective HSP length: 107
effective length of query: 764
effective length of database: 8,277,491
effective search space: 6324003124
effective search space used: 6324003124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)